BIOMD0000000202
type: SBMLModel
units def: metaid_0000077
species: metaid_0000048
units def: metaid_0000072
species: metaid_0000044
parameter: metaid_0000014
parameter: metaid_0000017
compartment: metaid_0000041
parameter: metaid_0000033
is version of: GO:0051209
reaction: metaid_0000064
reaction: metaid_0000067
species: metaid_0000047
parameter: metaid_0000036
is version of: GO:0032237
species: metaid_0000052
species: metaid_0000050
reaction: metaid_0000054
reaction: metaid_0000057
reaction: metaid_0000058
parameter: metaid_0000018
parameter: metaid_0000022
parameter: metaid_0000081
parameter: metaid_0000025
species: metaid_0000080
parameter: metaid_0000004
parameter: metaid_0000008
is version of: GO:0051928
parameter: metaid_0000012
parameter: metaid_0000071
parameter: metaid_0000015
parameter: metaid_0000028
parameter: metaid_0000031
time units: metaid_0000003
reaction: metaid_0000062
reaction: metaid_0000065
notes: The model reproduces the plots in Figures 1 and 2. Note that the units of the time scale "A" are not right in the paper, it was corrected by the curator. Model successfully tested on MathSBML.
species: metaid_0000051
parameter: metaid_0000034
name: ChenXF2008_CICR
parameter: metaid_0000037
parameter: metaid_0000078
reaction: metaid_0000055
reaction: metaid_0000068
parameter: metaid_0000019
parameter: metaid_0000020
length unit: length
parameter: metaid_0000023
parameter: metaid_0000005
reaction: metaid_0000061
parameter: metaid_0000006
species: metaid_0000049
parameter: metaid_0000009
units def: metaid_0000074
parameter: metaid_0000010
parameter: metaid_0000013
parameter: metaid_0000026
parameter: metaid_0000029
units def: metaid_0000075
rule: metaid_0000073
reaction: metaid_0000063
parameter: metaid_0000016
compartment: metaid_0000040
substance units: metaid_0000072
volume units: metaid_0000005
parameter: metaid_0000032
parameter: metaid_0000035
reaction: metaid_0000053
is described by: http://identifiers.org/pubmed/18538916
rule: metaid_0000070
reaction: metaid_0000066
reaction: metaid_0000069
compartment: metaid_0000039
area units: metaid_0000005
parameter: metaid_0000021
is: MODEL7519277765
parameter: metaid_0000003
parameter: metaid_0000038
rule: metaid_0000079
reaction: metaid_0000056

metaid_0000077
type: SBMLUnitsDef
unit: 460093
unit: 460081
unit: 460069
name: uM_1_s_1

460093
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND

460081
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: LITRE

460069
type: SBMLUnit
exponent: -1.0
scale: -6
multipler: 1.0
kind: MOLE

metaid_0000048
type: Species
is version of: Q13586
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.54
initial amount: NaN
in compartment: metaid_0000040

metaid_0000040
type: Compartment
constant: true
size: 0.185
spatial dimensions: 3.0

metaid_0000072
type: SBMLUnitsDef
unit: 459985
name: micromole

459985
type: SBMLUnit
exponent: 1.0
scale: -6
multipler: 1.0
kind: MOLE

metaid_0000044
type: Species
is: C01245
is: CHEBI:16595
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: metaid_0000039

metaid_0000039
type: Compartment
constant: true
size: 1.0
spatial dimensions: 3.0

metaid_0000014
type: Parameter
constant: true
units: metaid_0000076
value: 1.0

metaid_0000076
type: SBMLUnitsDef
unit: 460057
unit: 460045
unit: 460033
name: uM_s_1

460057
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND

460045
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: LITRE

460033
type: SBMLUnit
exponent: 1.0
scale: -6
multipler: 1.0
kind: MOLE

metaid_0000017
type: Parameter
constant: true
units: metaid_0000076
value: 0.5

metaid_0000041
type: Compartment
constant: true
size: 1.0
spatial dimensions: 3.0

metaid_0000033
type: Parameter
constant: true
units: metaid_0000075
value: 0.5

metaid_0000075
type: SBMLUnitsDef
unit: 460021
name: s_1

460021
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND

metaid_0000064
type: Reaction
kinetic law: 460432
reactant: 460420
fast: false
reversible: false

460420
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000050

metaid_0000050
type: Species
is version of: Q13586
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: metaid_0000040

metaid_0000067
type: Reaction
kinetic law: 460540
modifier: 460528
product: 460516
reactant: 460504
fast: false
reversible: false

metaid_0000049
type: Species
is version of: Q13586
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.06
initial amount: NaN
in compartment: metaid_0000040

460516
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000052

metaid_0000052
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: metaid_0000041

460504
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000051

metaid_0000051
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: metaid_0000041

metaid_0000047
type: Species
is: C00076
is: CHEBI:29108
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: metaid_0000040

metaid_0000036
type: Parameter
constant: true
units: metaid_0000074
value: 0.2

metaid_0000074
type: SBMLUnitsDef
unit: 460009
unit: 459997
name: uM

460009
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: LITRE

459997
type: SBMLUnit
exponent: 1.0
scale: -6
multipler: 1.0
kind: MOLE

metaid_0000054
type: Reaction
kinetic law: 460178
product: 460166
reactant: 460153
is version of: GO:0005388
fast: false
reversible: false

460166
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000047

460153
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000043

metaid_0000043
type: Species
is: C00076
is: CHEBI:29108
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: metaid_0000039

metaid_0000057
type: Reaction
kinetic law: 460275
modifier: 460263
product: 460251
is version of: GO:0050429
fast: false
reversible: false

460251
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000044

metaid_0000058
type: Reaction
kinetic law: 460312
modifier: 460300
reactant: 460288
fast: false
reversible: false

460288
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000044

metaid_0000018
type: Parameter
constant: true
units: metaid_0000074
value: 0.12

metaid_0000022
type: Parameter
constant: true
units: metaid_0000074
value: 0.4

metaid_0000081
type: Parameter
constant: true
units: metaid_0000074
value: 0.001

metaid_0000025
type: Parameter
constant: true
units: metaid_0000075
value: 4.0

metaid_0000080
type: Species
is version of: Q96D31
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000041

metaid_0000004
type: Parameter
constant: true
units: metaid_0000075
value: 66.6

metaid_0000008
type: Parameter
constant: true
units: metaid_0000076
value: 1.0

metaid_0000012
type: Parameter
constant: true
units: metaid_0000075
value: 5.0E-7

metaid_0000071
type: Parameter
constant: true
units: dimensionless
value: 4.0

metaid_0000015
type: Parameter
constant: true
units: dimensionless
value: 2.0

metaid_0000028
type: Parameter
constant: true
units: metaid_0000075
value: 0.8

metaid_0000031
type: Parameter
constant: true
units: dimensionless
value: 3.0

metaid_0000062
type: Reaction
kinetic law: 460372
reactant: 460360
fast: false
reversible: false

460360
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000049

metaid_0000065
type: Reaction
kinetic law: 460468
modifier: 460456
product: 460444
fast: false
reversible: false

460444
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000051

metaid_0000034
type: Parameter
constant: true
units: metaid_0000075
value: 0.5

metaid_0000037
type: Parameter
constant: true
units: metaid_0000075
value: 1.0

metaid_0000078
type: Parameter
constant: false
units: dimensionless
value: 0.0

metaid_0000055
type: Reaction
kinetic law: 460215
modifier: 460202
product: 460190
is version of: GO:0051928
fast: false
reversible: false

460190
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000043

metaid_0000068
type: Reaction
kinetic law: 460576
product: 460564
reactant: 460552
fast: false
reversible: false

460564
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000051

460552
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000052

metaid_0000019
type: Parameter
constant: true
units: metaid_0000075
value: 0.5

metaid_0000020
type: Parameter
constant: true
units: metaid_0000074
value: 0.1

metaid_0000023
type: Parameter
constant: true
units: metaid_0000074
value: 5.0

metaid_0000005
type: Parameter
constant: true
units: metaid_0000074
value: 1.0

metaid_0000061
type: Reaction
kinetic law: 460348
modifier: 460336
product: 460324
is version of: GO:0032237
fast: false
reversible: false

460324
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000049

metaid_0000006
type: Parameter
constant: true
units: metaid_0000075
value: 6.0

metaid_0000009
type: Parameter
constant: true
units: dimensionless
value: 2.0

metaid_0000010
type: Parameter
constant: true
units: metaid_0000074
value: 0.15

metaid_0000013
type: Parameter
constant: true
units: metaid_0000074
value: 1500.0

metaid_0000026
type: Parameter
constant: true
units: metaid_0000076
value: 0.25

metaid_0000029
type: Parameter
constant: true
units: metaid_0000076
value: 1.8E-4

metaid_0000063
type: Reaction
kinetic law: 460408
modifier: 460396
product: 460384
fast: false
reversible: false

460384
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000050

metaid_0000016
type: Parameter
constant: true
units: metaid_0000074
value: 0.45

metaid_0000032
type: Parameter
constant: true
units: metaid_0000074
value: 2.0E-5

metaid_0000035
type: Parameter
constant: true
units: dimensionless
value: 1.0

metaid_0000053
type: Reaction
kinetic law: 460141
modifier: 460129
product: 460117
reactant: 460105
is version of: GO:0048763
fast: false
reversible: false

460117
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000043

460105
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000047

metaid_0000066
type: Reaction
kinetic law: 460492
reactant: 460480
fast: false
reversible: false

460480
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000051

metaid_0000069
type: Reaction
kinetic law: 460600
reactant: 460588
fast: false
reversible: false

460588
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000052

metaid_0000021
type: Parameter
constant: true
units: metaid_0000077
value: 0.5

metaid_0000003
type: Parameter
constant: true
units: metaid_0000075
value: 9.3E-4

metaid_0000038
type: Parameter
constant: true
units: metaid_0000075
value: 0.6

metaid_0000056
type: Reaction
kinetic law: 460239
reactant: 460227
is version of: GO:0005388
fast: false
reversible: false

460227
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000043

metaid_0000007
type: Parameter
constant: true
units: metaid_0000074
value: 0.4

metaid_0000011
type: Parameter
constant: true
units: metaid_0000077
value: 2.3

metaid_0000024
type: Parameter
constant: true
units: metaid_0000074
value: 0.6

metaid_0000027
type: Parameter
constant: true
units: metaid_0000074
value: 0.14

W3 CDTF: Fri Apr 20 23:26:30 BST 2012

ORG:
  orgname: California Institute of Technology
n:
  given: Harish
  family: Dharuri

W3 CDTF: Mon Nov 24 07:12:39 GMT 2008