BIOMD0000000188
type: SBMLModel
units def: metaid_0000077
species: metaid_0000032
parameter: metaid_0000009
species: metaid_0000035
species: metaid_0000026
event: metaid_0000069
species: metaid_0000042
reaction: metaid_0000052
rule: metaid_0000046
occurs in: http://identifiers.org/taxonomy/9606
species: metaid_0000038
event: metaid_0000068
species: metaid_0000044
parameter: metaid_0000019
parameter: metaid_0000020
parameter: metaid_0000012
parameter: metaid_0000021
is version of: REACT 309
reaction: metaid_0000059
reaction: metaid_0000067
is version of: GO:0043516
parameter: metaid_0000006
species: metaid_0000031
parameter: metaid_0000007
reaction: metaid_0000051
reaction: metaid_0000062
reaction: metaid_0000063
compartment: metaid_0000024
is part of: REACT 85
units def: metaid_0000076
species: metaid_0000033
time units: metaid_0000054
species: metaid_0000040
species: metaid_0000028
curated: true
rule: metaid_0000047
notes: This model is automatically converted from the Model BIOMD0000000188 by using libsbml . According to the terms of use , this generated model is not related with Model BIOMD0000000188 any more.
species: metaid_0000036
species: metaid_0000027
species: metaid_0000043
species: metaid_0000039
reaction: metaid_0000066
reaction: metaid_0000055
volume units: metaid_0000004
units def: metaid_0000075
parameter: metaid_0000017
parameter: metaid_0000018
species: metaid_0000045
reaction: metaid_0000057
reaction: metaid_0000058
units def: metaid_0000072
parameter: metaid_0000004
parameter: metaid_0000005
reaction: metaid_0000061
reaction: metaid_0000060
reaction: metaid_0000050
area units: metaid_0000005
substance units: metaid_0000053
parameter: metaid_0000015
is described by: http://identifiers.org/pubmed/18706112
parameter: metaid_0000011
is: MODEL5836973167
is part of: hsa04115
parameter: metaid_0000023
species: metaid_0000025
species: metaid_0000041
species: metaid_0000029
species: metaid_0000037
parameter: metaid_0000008
reaction: metaid_0000064
reaction: metaid_0000053
reaction: metaid_0000054
reaction: metaid_0000048
reaction: metaid_0000065
reaction: metaid_0000049
parameter: metaid_0000016
reaction: metaid_0000056
units def: metaid_0000074
name: Proctor2008_p53_Mdm2_ATM

metaid_0000077
type: SBMLUnitsDef
unit: 254778
name: psec

254778
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND

metaid_0000032
type: Species
boundary condition: false
constant: false
is encoded by: ENSG00000141510
encodes: P04637
in compartment: metaid_0000024
initial amount: 0.0
initial concentration: NaN
is: SBO:0000252
has only substance units: true

metaid_0000024
type: Compartment
is: GO:0005623
constant: true
size: 1.0
spatial dimensions: 3.0

metaid_0000009
type: Parameter
constant: true
units: metaid_0000077
value: 1.155E-5

metaid_0000035
type: Species
is: SBO:0000405
initial amount: 0.0
boundary condition: false
initial concentration: NaN
is version of: GO:0006974
constant: false
is version of: CHEBI:16991
has only substance units: true
in compartment: metaid_0000024

metaid_0000026
type: Species
constant: false
has only substance units: true
initial amount: 5.0
in compartment: metaid_0000024
boundary condition: false
is: SBO:0000252
initial concentration: NaN
is: P04637
is encoded by: ENSG00000141510

metaid_0000069
type: Event
event assignment: 255783
trigger: 255771
use values from trigger time: true

metaid_0000034
type: Parameter
constant: false
units: metaid_0000074
value: 0.0

metaid_0000074
type: SBMLUnitsDef
unit: 254718
name: dGy

254718
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 10.0
kind: GRAY

255771
type: Trigger
persistant: true
initial value: true

metaid_0000042
type: Species
is version of: GO:0006402
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000024

metaid_0000052
type: Reaction
reversible: false
reactant: 254985
kinetic law: 255033
fast: false
is version of: GO:0003700
product: 255021
product: 254997
product: 255009

254985
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000032

255021
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000043

metaid_0000043
type: Species
is version of: GO:0003700
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000024

254997
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000032

255009
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000028

metaid_0000028
type: Species
in compartment: metaid_0000024
has only substance units: true
constant: false
is: SBO:0000250
boundary condition: false
is version of: CHEBI:33699
initial concentration: NaN
is version of: C00046
initial amount: 10.0

metaid_0000038
type: Species
is version of: GO:0043161
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000024

metaid_0000068
type: Event
event assignment: 255759
trigger: 255747
is version of: GO:0006950
use values from trigger time: true

255747
type: Trigger
persistant: true
initial value: true

metaid_0000044
type: Species
is: SBO:0000252
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000024

metaid_0000019
type: Parameter
constant: true
units: metaid_0000072
value: 0.08

metaid_0000072
type: SBMLUnitsDef
unit: 254706
unit: 254693
unit: 254681
name: molepsecpdGy

254706
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 10.0
kind: GRAY

254693
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND

254681
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: MOLE

metaid_0000020
type: Parameter
constant: true
units: metaid_0000077
value: 2.0E-5

metaid_0000012
type: Parameter
constant: true
units: metaid_0000076
value: 1.0E-4

metaid_0000076
type: SBMLUnitsDef
unit: 254766
unit: 254754
name: pmolpsec

254766
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND

254754
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: MOLE

metaid_0000021
type: Parameter
constant: true
units: dimensionless
value: 1.0

metaid_0000059
type: Reaction
kinetic law: 255361
product: 255349
is version of: GO:0006974
fast: false
reversible: false

255349
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000035

metaid_0000067
type: Reaction
kinetic law: 255735
product: 255723
reactant: 255711
is version of: GO:0006470
fast: false
reversible: false

255723
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000031

metaid_0000031
type: Species
is: Q13315
is: SBO:0000252
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 200.0
in compartment: metaid_0000024

255711
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000030

metaid_0000030
type: Species
is: Q13315
is: SBO:0000252
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000024

metaid_0000006
type: Parameter
constant: true
units: metaid_0000077
value: 0.006

metaid_0000007
type: Parameter
constant: true
units: metaid_0000077
value: 8.25E-4

metaid_0000051
type: Reaction
is version of: GO:0003700
reversible: false
product: 254948
reactant: 254924
product: 254961
fast: false
product: 254936
kinetic law: 254973

254948
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000028

254924
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000026

254961
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000043

254936
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000026

metaid_0000062
type: Reaction
kinetic law: 255518
is version of: GO:0006468
reversible: false
reactant: 255470
product: 255506
product: 255494
fast: false
reactant: 255482

255470
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000026

255506
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000030

255494
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000032

255482
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000030

metaid_0000063
type: Reaction
kinetic law: 255555
product: 255543
reactant: 255531
is version of: GO:0006470
fast: false
reversible: false

255543
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000026

255531
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000032

metaid_0000033
type: Species
initial concentration: NaN
constant: false
has only substance units: true
encodes: Q00987
initial amount: 0.0
boundary condition: false
is: SBO:0000252
in compartment: metaid_0000024
is encoded by: ENSG00000135679

metaid_0000040
type: Species
is version of: GO:0043161
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000024

metaid_0000036
type: Species
is: SBO:0000291
constant: true
boundary condition: true
has only substance units: true
initial concentration: NaN
initial amount: 1.0
in compartment: metaid_0000024

metaid_0000027
type: Species
has part: Q00987
in compartment: metaid_0000024
initial amount: 95.0
is: SBO:0000297
initial concentration: NaN
constant: false
has only substance units: true
has part: P04637
boundary condition: false

metaid_0000039
type: Species
is version of: GO:0006412
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000024

metaid_0000066
type: Reaction
kinetic law: 255699
product: 255687
product: 255675
reactant: 255663
is version of: GO:0043161
fast: false
reversible: false

255687
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000040

255675
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000036

255663
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000033

metaid_0000055
type: Reaction
product: 255167
kinetic law: 255191
is version of: GO:0006412
product: 255179
reactant: 255142
reversible: false
product: 255154
fast: false

255167
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000029

metaid_0000029
type: Species
initial amount: 10.0
is version of: C00046
has only substance units: true
is: SBO:0000250
boundary condition: false
is version of: CHEBI:33699
initial concentration: NaN
constant: false
in compartment: metaid_0000024

255179
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000039

255142
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000029

255154
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000026

metaid_0000075
type: SBMLUnitsDef
unit: 254742
unit: 254730
name: molpsec

254742
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND

254730
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: MOLE

metaid_0000017
type: Parameter
constant: true
units: metaid_0000076
value: 2.0

metaid_0000018
type: Parameter
constant: true
units: metaid_0000077
value: 0.5

metaid_0000045
type: Species
is: SBO:0000252
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000024

metaid_0000057
type: Reaction
kinetic law: 255287
product: 255275
reactant: 255263
reactant: 255251
is version of: GO:0002039
fast: false
reversible: false

255275
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000027

255263
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000025

metaid_0000025
type: Species
has only substance units: true
in compartment: metaid_0000024
is encoded by: ENSG00000135679
is: Q00987
boundary condition: false
constant: false
initial amount: 5.0
initial concentration: NaN
is: SBO:0000252

255251
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000026

metaid_0000058
type: Reaction
kinetic law: 255337
product: 255324
product: 255312
reactant: 255299
is version of: GO:0043624
fast: false
reversible: false

255324
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000025

255312
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000026

255299
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000027

metaid_0000004
type: Parameter
constant: true
units: metaid_0000077
value: 4.95E-4

metaid_0000005
type: Parameter
constant: true
units: metaid_0000077
value: 4.33E-4

metaid_0000061
type: Reaction
reactant: 255409
reversible: false
reactant: 255421
is version of: GO:0006468
fast: false
product: 255446
product: 255434
kinetic law: 255458

255409
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000035

255421
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000031

255446
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000030

255434
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000035

metaid_0000060
type: Reaction
kinetic law: 255397
product: 255385
reactant: 255373
is version of: GO:0006281
fast: false
reversible: false

255385
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000036

255373
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000035

metaid_0000050
type: Reaction
product: 254887
reactant: 254863
fast: false
kinetic law: 254912
is version of: GO:0006412
product: 254875
reversible: false
product: 254900

254887
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000025

254863
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000028

254875
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000028

254900
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000041

metaid_0000041
type: Species
is version of: GO:0006412
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000024

metaid_0000015
type: Parameter
constant: true
units: metaid_0000076
value: 5.0E-4

metaid_0000011
type: Parameter
constant: true
units: metaid_0000077
value: 1.0E-4

metaid_0000023
type: Parameter
constant: true
units: metaid_0000077
value: 1.0E-4

metaid_0000037
type: Species
is: SBO:0000291
constant: true
boundary condition: true
has only substance units: true
initial concentration: NaN
initial amount: 1.0
in compartment: metaid_0000024

metaid_0000008
type: Parameter
constant: true
units: metaid_0000076
value: 0.001155

metaid_0000064
type: Reaction
reversible: false
product: 255591
fast: false
reactant: 255567
kinetic law: 255615
reactant: 255579
is version of: GO:0006468
product: 255603

255591
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000033

255567
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000025

255579
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000030

255603
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000030

metaid_0000053
type: Reaction
kinetic law: 255081
product: 255069
product: 255057
reactant: 255045
is version of: GO:0006402
fast: false
reversible: false

255069
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000042

255057
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000036

255045
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000028

metaid_0000054
type: Reaction
kinetic law: 255130
product: 255118
product: 255105
reactant: 255093
is version of: GO:0043161
fast: false
reversible: false

255118
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000040

255105
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000036

255093
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000025

metaid_0000048
type: Reaction
kinetic law: 254815
product: 254803
reactant: 254790
is version of: GO:0003700
fast: false
reversible: false

254803
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000029

254790
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000037

metaid_0000065
type: Reaction
kinetic law: 255651
product: 255639
reactant: 255627
is version of: GO:0006470
fast: false
reversible: false

255639
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000025

255627
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000033

metaid_0000049
type: Reaction
kinetic law: 254851
product: 254839
reactant: 254827
is version of: GO:0006402
fast: false
reversible: false

254839
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000036

254827
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000029

metaid_0000016
type: Parameter
constant: true
units: metaid_0000077
value: 0.5

metaid_0000056
type: Reaction
kinetic law: 255239
product: 255227
product: 255215
reactant: 255203
is version of: GO:0043161
fast: false
reversible: false

255227
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000038

255215
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000025

255203
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000027

metaid_0000013
type: Parameter
constant: true
units: metaid_0000077
value: 4.0E-4

metaid_0000022
type: Parameter
constant: true
units: metaid_0000077
value: 0.001

metaid_0000014
type: Parameter
constant: true
units: metaid_0000077
value: 5.0E-4

metaid_0000010
type: Parameter
constant: true
units: metaid_0000077
value: 1.0E-4

ORG:
  orgname: EMBL-EBI
n:
  given: Vijayalakshmi
  family: Chelliah

ORG:
  orgname: Ottawa Health Research Institute, Ottawa.
n:
  given: Douglas A
  family: Gray

ORG:
  orgname: University of Newcastle
n:
  given: Carole
  family: Proctor

W3 CDTF: Mon Sep 01 12:45:30 BST 2008

W3 CDTF: Tue Feb 02 13:34:40 GMT 2010