BIOMD0000000076
type: SBMLModel
time units: metaid_0000010
is part of: sce00561
species: metaid_0000006
units def: metaid_0000009
reaction: metaid_0000008
name: Cronwright2002_Glycerol_Synthesis
is described by: http://identifiers.org/pubmed/12200299
created:
  W3 CDTF: Mon Nov 06 02:32:33 GMT 2006
species: metaid_0000004
reaction: metaid_0000007
modified:
  W3 CDTF: Wed May 16 11:18:47 BST 2012
curated: true
creator:
  ORG:
    orgname: California Institute of Technology
  n:
    given: Harish
    family: Dharuri
length unit: length
units def: metaid_0000010
area units: metaid_0000005
occurs in: http://identifiers.org/taxonomy/4932
substance units: metaid_0000009
units def: metaid_0000012
creator:
  ORG:
    orgname: Stellenbosh University
  n:
    given: Jacky L
    family: Snoep
is: MODEL6624139162
species: metaid_0000005
compartment: metaid_0000003
notes: . . . SBML level 2 code generated for the JWS Online project by Jacky Snoep using PySCeS Run this model online at http://jjj.biochem.sun.ac.za To cite JWS Online please refer to: Olivier, B.G. and Snoep, J.L. (2004) Web-based modelling using JWS Online , Bioinformatics, 20:2143-2144 . . . . . . Biomodels Curation The model reproduces the flux value of "Gpp p" (rate of Glycerol synthesis) as depicted in Fig 3 of the paper. The model reproduces the flux for early exponential phase , however it can be used to reproduce the values for other phases by plugging in appropriate values for maximal rates as given in Table 1 and metabolite concentrations as given in Table 2 of the paper. The model was succesfully reproduced using Jarnac.
is: GO:0006114
volume units: metaid_0000004
units def: metaid_0000011

metaid_0000010
type: SBMLUnitsDef
unit: 974463
name: minute

974463
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 60.0
kind: SECOND

metaid_0000006
type: Species
has only substance units: false
in compartment: metaid_0000003
constant: false
initial concentration: 0.59
boundary condition: true
initial amount: NaN
name: DHAP
is: C00111
is: CHEBI:16108

metaid_0000003
type: Compartment
is: GO:0005737
constant: true
size: 1.0
spatial dimensions: 3.0
name: Cytoplasm

metaid_0000009
type: SBMLUnitsDef
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name: millimole

974451
type: SBMLUnit
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE

metaid_0000008
type: Reaction
kinetic law: 974765
product: 974753
reactant: 974741
is: R00841
is: http://identifiers.org/ec-code/3.1.3.21
fast: false
reversible: true
name: Glycerol 3-phosphatase

974813
type: LocalParameter
units: metaid_0000012
value: 1.0

metaid_0000012
type: SBMLUnitsDef
unit: 974524
unit: 974512
name: mM

974524
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: LITRE

974512
type: SBMLUnit
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE

974801
type: LocalParameter
units: metaid_0000012
value: 1.0

974789
type: LocalParameter
units: metaid_0000012
value: 3.5

974777
type: LocalParameter
units: metaid_0000011
value: 53.0

metaid_0000011
type: SBMLUnitsDef
unit: 974500
unit: 974488
unit: 974476
name: mM_per_minute

974500
type: SBMLUnit
exponent: -1.0
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multipler: 60.0
kind: SECOND

974488
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974476
type: SBMLUnit
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kind: MOLE

974753
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000005

metaid_0000005
type: Species
initial concentration: 15.1
in compartment: metaid_0000003
is: C00116
has only substance units: false
name: Glycerol
is: CHEBI:17754
constant: false
boundary condition: true
initial amount: NaN

974741
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000004

metaid_0000004
type: Species
has only substance units: false
boundary condition: false
is: C00093
in compartment: metaid_0000003
name: Glycerol 3-phosphate
constant: false
initial amount: NaN
initial concentration: 0.0
is: CHEBI:15978

metaid_0000007
type: Reaction
kinetic law: 974561
product: 974548
reactant: 974536
is: R00842
is: http://identifiers.org/ec-code/1.1.1.94
fast: false
reversible: true
name: Glycerol 3-phosphate dehydrogenase

974645
type: LocalParameter
units: metaid_0000012
value: 6.01

974669
type: LocalParameter
units: metaid_0000012
value: 2.37

974597
type: LocalParameter
units: metaid_0000012
value: 0.54

974681
type: LocalParameter
units: metaid_0000012
value: 0.73

974573
type: LocalParameter
units: metaid_0000011
value: 47.0

974633
type: LocalParameter
units: dimensionless
value: 10000.0

974585
type: LocalParameter
units: metaid_0000012
value: 0.023

974729
type: LocalParameter
units: metaid_0000012
value: 1.2

974705
type: LocalParameter
units: metaid_0000012
value: 2.0

974657
type: LocalParameter
units: metaid_0000012
value: 4.8

974693
type: LocalParameter
units: metaid_0000012
value: 2.17

974609
type: LocalParameter
units: metaid_0000012
value: 1.87

974621
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units: metaid_0000012
value: 1.45

974717
type: LocalParameter
units: metaid_0000012
value: 0.93

974548
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species: metaid_0000004

974536
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000006