BIOMD0000000054
type: SBMLModel
parameter: metaid_0000022
parameter: metaid_0000023
length unit: length
has part: GO:0006167
parameter: metaid_0000019
modified:
  W3 CDTF: Thu Jul 05 15:43:25 BST 2012
species: metaid_0000006
parameter: metaid_0000020
creator:
  ORG:
    orgname: California Institute of Technology
  n:
    given: Harish
    family: Dharuri
volume units: metaid_0000323
species: metaid_0000007
units def: metaid_0000003
parameter: metaid_0000021
parameter: metaid_0000017
parameter: metaid_0000018
reaction: metaid_0000009
compartment: metaid_0000005
reaction: metaid_0000011
has part: GO:0002028
substance units: metaid_0000003
parameter: metaid_0000016
name: Ataullahkhanov1996_Adenylate
is: MODEL4770526315
parameter: metaid_0000025
species: metaid_0000008
rule: 495826
rule: 495809
is described by: http://identifiers.org/pubmed/8733433
reaction: metaid_0000010
occurs in: http://identifiers.org/taxonomy/9606
has part: GO:0006110
parameter: metaid_0000024
area units: area
time units: metaid_0000004
reaction: metaid_0000013
reaction: metaid_0000014
created:
  W3 CDTF: Wed Apr 12 23:04:58 BST 2006
units def: metaid_0000004
curated: true
notes: The model reproduces ion and adenylate pool concentration corresponding to line 2 of Fig 3 of the publication. This model was tested successfully on Jarnac To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information. In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not. To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.

metaid_0000022
type: Parameter
constant: true
value: 0.02
name: de novo AMP synthesis

metaid_0000023
type: Parameter
constant: true
value: 0.01
name: AMP degradation

metaid_0000019
type: Parameter
constant: true
value: 100.0
name: Extracellular ion concentration

metaid_0000006
type: Species
is: C01330
constant: false
boundary condition: false
initial amount: NaN
in compartment: metaid_0000005
initial concentration: 10.0
name: Ions
is: CHEBI:29101
has only substance units: false

metaid_0000005
type: Compartment
is: GO:0005623
constant: true
size: 1.0
spatial dimensions: 3.0
name: Erythrocyte

metaid_0000020
type: Parameter
constant: true
value: 0.2
name: Ion pump activity

metaid_0000007
type: Species
in compartment: metaid_0000005
initial concentration: 2.1
boundary condition: false
has version: CHEBI:15422
has version: C00002
constant: false
initial amount: NaN
name: Energy pool
has version: CHEBI:16761
has only substance units: false
has version: C00008

metaid_0000003
type: SBMLUnitsDef
unit: 798206
name: millimole (default)

798206
type: SBMLUnit
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE

metaid_0000021
type: Parameter
constant: true
value: 13.48
name: Glycolytic activity

metaid_0000017
type: Parameter
constant: false
value: 0.01
name: AMP

metaid_0000018
type: Parameter
constant: true
value: 0.121
name: Membrane permeability

metaid_0000009
type: Reaction
kinetic law: 798245
product: 798232
is version of: GO:0006814
fast: false
reversible: false
name: Passive ion influx

798232
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000006

metaid_0000011
type: Reaction
kinetic law: 798310
product: 798297
is version of: GO:0006754
fast: false
reversible: false
name: ATP from glycolysis

798297
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000007

metaid_0000016
type: Parameter
constant: false
value: 1.0
name: ATP

metaid_0000025
type: Parameter
constant: true
value: -1.0
name: Dependence of AMP degradation on AMP

metaid_0000008
type: Species
has version: CHEBI:16761
initial concentration: 1.11
in compartment: metaid_0000005
constant: false
name: Adenylate pool
initial amount: NaN
has only substance units: false
has version: C00020
has version: C00008
boundary condition: false
has version: CHEBI:15422
has version: CHEBI:16027
has version: C00002

metaid_0000010
type: Reaction
kinetic law: 798285
reactant: 798271
reactant: 798258
has part: GO:0006814
has part: GO:0042623
fast: false
reversible: false
name: ATP consumption by ion pump

798271
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000007

798258
type: SpeciesReference
stoichiometry: 3.0
species: metaid_0000006

metaid_0000024
type: Parameter
constant: true
value: 1.2
name: Dependence of AMP degradation on ATP

metaid_0000004
type: SBMLUnitsDef
unit: 798219
name: hour (default)

798219
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 3600.0
kind: SECOND

metaid_0000013
type: Reaction
kinetic law: 798335
reactant: 798323
has part: http://identifiers.org/ec-code/2.7.1.20
has part: GO:0003999
reversible: false
fast: false
has part: http://identifiers.org/ec-code/2.4.2.7
name: AMP synthesis de novo
has part: GO:0004001

798323
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000007

metaid_0000014
type: Reaction
has part: http://identifiers.org/ec-code/2.4.2.7
reversible: false
has part: http://identifiers.org/ec-code/2.7.1.20
product: 798347
has part: GO:0003999
name: Adenylate pool
has part: GO:0004001
kinetic law: 798359
fast: false
has part: http://identifiers.org/ec-code/3.5.4.6
has part: GO:0003876

798347
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000008