BIOMD0000000042
type: SBMLModel
parameter: metaid_0000016
parameter: metaid_0000017
units def: metaid_0000069
species: metaid_0000031
parameter: metaid_0000023
parameter: metaid_0000024
parameter: metaid_0000006
parameter: metaid_0000010
parameter: metaid_0000011
reaction: metaid_0000046
reaction: metaid_0000045
species: metaid_0000036
is version of: GO:0006096
area units: area
reaction: metaid_0000052
is homolog to: REACT 1383
reaction: metaid_0000063
reaction: metaid_0000053
reaction: metaid_0000064
species: metaid_0000043
parameter: metaid_0000005
parameter: metaid_0000027
reaction: metaid_0000061
parameter: metaid_0000020
units def: metaid_0000070
parameter: metaid_0000014
parameter: metaid_0000015
parameter: metaid_0000022
time units: metaid_0000070
reaction: metaid_0000056
reaction: metaid_0000067
reaction: metaid_0000057
reaction: metaid_0000068
species: metaid_0000032
species: metaid_0000040
reaction: metaid_0000044
species: metaid_0000034
reaction: metaid_0000050
parameter: metaid_0000009
reaction: metaid_0000051
reaction: metaid_0000062
species: metaid_0000029
species: metaid_0000037
reaction: metaid_0000049
parameter: metaid_0000018
parameter: metaid_0000019
curated: true
parameter: metaid_0000003
parameter: metaid_0000004
parameter: metaid_0000026
reaction: metaid_0000060
length unit: length
occurs in: http://identifiers.org/taxonomy/4932
is described by: http://identifiers.org/pubmed/17029704
notes: This model was automatically converted from model BIOMD0000000042 by using libSBML . According to the BioModels Database terms of use , this generated model is not related with model BIOMD0000000042 any more.
substance units: metaid_0000069
reaction: metaid_0000054
reaction: metaid_0000055
reaction: metaid_0000066
is: sce00010
compartment: metaid_0000028
species: metaid_0000033
species: metaid_0000041
parameter: metaid_0000025
parameter: metaid_0000007
parameter: metaid_0000008
reaction: metaid_0000058
parameter: metaid_0000012
species: metaid_0000035
parameter: metaid_0000013
reaction: metaid_0000047
name: Nielsen1998_Glycolysis
reaction: metaid_0000048
reaction: metaid_0000059
species: metaid_0000038
species: metaid_0000042
reaction: metaid_0000065
is: MODEL6622455387
species: metaid_0000030

metaid_0000016
type: Parameter
constant: true
value: 0.5

metaid_0000017
type: Parameter
constant: true
value: 10.0

metaid_0000069
type: SBMLUnitsDef
unit: 748521
name: millimole

748521
type: SBMLUnit
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE

metaid_0000031
type: Species
is: C00020
is: CHEBI:16027
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.00261149
in compartment: metaid_0000028

metaid_0000028
type: Compartment
is version of: GO:0005737
constant: true
size: 1.0
spatial dimensions: 3.0

metaid_0000023
type: Parameter
constant: true
value: 1.43E-4

metaid_0000024
type: Parameter
constant: true
value: 10.0

metaid_0000006
type: Parameter
constant: true
value: 1.5

metaid_0000010
type: Parameter
constant: true
value: 1.0

metaid_0000011
type: Parameter
constant: true
value: 50.0

metaid_0000046
type: Reaction
kinetic law: 748605
product: 748593
is version of: GO:0006735
fast: false
reversible: true

748593
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000037

metaid_0000037
type: Species
is: C00004
is: CHEBI:16908
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.616118
in compartment: metaid_0000028

metaid_0000045
type: Reaction
kinetic law: 748581
product: 748569
is version of: GO:0006172
fast: false
reversible: true

748569
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000030

metaid_0000030
type: Species
is: C00008
is: CHEBI:16761
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.108367
in compartment: metaid_0000028

metaid_0000036
type: Species
is: C00003
is: CHEBI:15846
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 3.62057
in compartment: metaid_0000028

metaid_0000052
type: Reaction
kinetic law: 748749
reactant: 748737
fast: false
reversible: false

748737
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000038

metaid_0000038
type: Species
is: C00236
is: CHEBI:16001
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.299109
in compartment: metaid_0000028

metaid_0000063
type: Reaction
has part: http://identifiers.org/ec-code/4.2.1.11
has part: R00658
reactant: 749147
has part: R01512
has part: http://identifiers.org/ec-code/2.7.2.3
fast: false
kinetic law: 749184
has part: REACT 1771
reversible: true
product: 749172
product: 749160
reactant: 749135
has part: http://identifiers.org/ec-code/5.4.2.1
has part: REACT 1400
has part: R01518

749147
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000030

749172
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000029

metaid_0000029
type: Species
is: C00002
is: CHEBI:15422
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 4.49064
in compartment: metaid_0000028

749160
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000039

metaid_0000039
type: Species
is: CHEBI:18021
is: C00074
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0021125
in compartment: metaid_0000028

749135
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000038

metaid_0000053
type: Reaction
kinetic law: 748773
reactant: 748761
fast: false
reversible: false

748761
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000039

metaid_0000064
type: Reaction
reversible: false
product: 749220
has version: R00200
product: 749232
reactant: 749196
has version: http://identifiers.org/ec-code/2.7.1.40
is homolog to: REACT 1911
reactant: 749208
kinetic law: 749245
fast: false

749220
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000040

metaid_0000040
type: Species
is: CHEBI:15361
is: C00022
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.00422702
in compartment: metaid_0000028

749232
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000029

749196
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000039

749208
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000030

metaid_0000043
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000028

metaid_0000005
type: Parameter
constant: true
value: 0.063

metaid_0000027
type: Parameter
constant: true
value: 0.011

metaid_0000061
type: Reaction
has part: R01070
product: 749051
has part: http://identifiers.org/ec-code/4.1.2.13
reactant: 749039
has part: http://identifiers.org/ec-code/5.3.1.1
kinetic law: 749063
fast: false
is homolog to: REACT 1693
reversible: true
has part: R01015

749051
type: SpeciesReference
stoichiometry: 2.0
species: metaid_0000035

metaid_0000035
type: Species
is: C00118
is: CHEBI:29052
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.00190919
in compartment: metaid_0000028

749039
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000034

metaid_0000034
type: Species
is: C05378
is: CHEBI:16905
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.00770135
in compartment: metaid_0000028

metaid_0000020
type: Parameter
constant: true
value: 2.0

metaid_0000070
type: SBMLUnitsDef
unit: 748533
name: minute

748533
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 60.0
kind: SECOND

metaid_0000014
type: Parameter
constant: true
value: 1.0

metaid_0000015
type: Parameter
constant: true
value: 1.0

metaid_0000022
type: Parameter
constant: true
value: 1.0

metaid_0000056
type: Reaction
kinetic law: 748846
reactant: 748834
is version of: GO:0006068
fast: false
reversible: false

748834
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000042

metaid_0000042
type: Species
is: C00469
is: CHEBI:16236
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.33981
in compartment: metaid_0000028

metaid_0000067
type: Reaction
fast: false
reactant: 749366
reactant: 749354
kinetic law: 749391
is version of: R00127
reversible: true
is version of: http://identifiers.org/ec-code/2.7.4.3
product: 749378

749366
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000029

749354
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000031

749378
type: SpeciesReference
stoichiometry: 2.0
species: metaid_0000030

metaid_0000057
type: Reaction
kinetic law: 748870
reactant: 748858
is version of: GO:0006196
fast: false
reversible: false

748858
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000031

metaid_0000068
type: Reaction
kinetic law: 749427
product: 749415
reactant: 749403
is homolog to: REACT 1571
is version of: GO:0006001
fast: false
reversible: false

749415
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000043

749403
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000033

metaid_0000033
type: Species
is: C05345
is: CHEBI:20935
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.65939
in compartment: metaid_0000028

metaid_0000032
type: Species
is: C00293
is: CHEBI:17234
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0112817
in compartment: metaid_0000028

metaid_0000044
type: Reaction
kinetic law: 748557
product: 748545
is version of: GO:0006754
fast: false
reversible: true

748545
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000029

metaid_0000050
type: Reaction
kinetic law: 748701
reactant: 748689
is version of: GO:0030388
fast: false
reversible: false

748689
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000034

metaid_0000009
type: Parameter
constant: true
value: 0.01

metaid_0000051
type: Reaction
kinetic law: 748725
reactant: 748713
is version of: GO:0019683
fast: false
reversible: false

748713
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000035

metaid_0000062
type: Reaction
is homolog to: REACT 587
is version of: R01061
reactant: 749087
kinetic law: 749123
fast: false
reversible: false
product: 749111
reactant: 749075
is version of: http://identifiers.org/ec-code/1.2.1.12
product: 749099

749087
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000036

749111
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000037

749075
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000035

749099
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000038

metaid_0000049
type: Reaction
kinetic law: 748677
reactant: 748665
is version of: GO:0006002
fast: false
reversible: false

748665
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000033

metaid_0000018
type: Parameter
constant: true
value: 0.2

metaid_0000019
type: Parameter
constant: true
value: 0.3

metaid_0000003
type: Parameter
constant: true
value: 0.5

metaid_0000004
type: Parameter
constant: true
value: 0.1

metaid_0000026
type: Parameter
constant: true
value: 0.05

metaid_0000060
type: Reaction
is homolog to: REACT 1840
is version of: R00756
reversible: false
modifier: 749015
product: 748991
reactant: 748966
fast: false
reactant: 748978
is version of: http://identifiers.org/ec-code/2.7.1.11
kinetic law: 749027
product: 749003

748991
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000034

748966
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000033

748978
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000029

749003
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000030

metaid_0000054
type: Reaction
kinetic law: 748797
reactant: 748785
is version of: GO:0042867
fast: false
reversible: false

748785
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000040

metaid_0000055
type: Reaction
kinetic law: 748822
reactant: 748809
is version of: GO:0046187
fast: false
reversible: false

748809
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000041

metaid_0000041
type: Species
is: C00084
is: CHEBI:15343
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0738334
in compartment: metaid_0000028

metaid_0000066
type: Reaction
reactant: 749305
kinetic law: 749342
product: 749329
reactant: 749293
is version of: R00754
reversible: true
product: 749317
fast: false
is version of: http://identifiers.org/ec-code/1.1.1.71
is homolog to: REACT 799

749305
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000037

749329
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000036

749293
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000041

749317
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000042

metaid_0000025
type: Parameter
constant: true
value: 10.0

metaid_0000007
type: Parameter
constant: true
value: 0.0016

metaid_0000008
type: Parameter
constant: true
value: 0.017

metaid_0000058
type: Reaction
kinetic law: 748894
reactant: 748882
fast: false
reversible: false

748882
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000043

metaid_0000012
type: Parameter
constant: true
value: 10.0

metaid_0000013
type: Parameter
constant: true
value: 1.0

metaid_0000047
type: Reaction
kinetic law: 748629
product: 748617
is version of: GO:0009435
fast: false
reversible: true

748617
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000036

metaid_0000048
type: Reaction
kinetic law: 748653
product: 748641
is version of: GO:0046323
fast: false
reversible: true

748641
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000032

metaid_0000059
type: Reaction
reactant: 748918
fast: false
has part: R00299
product: 748942
is homolog to: REACT 1164
has part: http://identifiers.org/ec-code/5.3.1.9
reversible: false
has part: http://identifiers.org/ec-code/2.7.1.2
has part: R00771
reactant: 748906
kinetic law: 748954
product: 748930

748918
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000029

748942
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000030

748906
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000032

748930
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000033

metaid_0000065
type: Reaction
kinetic law: 749281
product: 749269
reactant: 749257
is version of: R00224
is version of: http://identifiers.org/ec-code/4.1.1.1
fast: false
reversible: false

749269
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000041

749257
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000040

metaid_0000021
type: Parameter
constant: true
value: 0.3

W3 CDTF: Thu Jun 30 15:08:28 BST 2005

ORG:
  orgname: EMBL-EBI
n:
  given: Nicolas
  family: Le Novère

W3 CDTF: Thu Jun 06 12:35:59 BST 2013

ORG:
  orgname: Institute of Theoretical Chemistry, University of Vienna
n:
  given: Lukas
  family: Endler

ORG:
  orgname: Institute of Theoretical Chemistry, University of Vienna
n:
  given: Christoph
  family: Flamm