BIOMD0000000025
type: SBMLModel
rule: 509008
reaction: metaid_0000012
compartment: metaid_0000005
parameter: 509025
created:
  W3 CDTF: Wed Jun 29 12:01:49 BST 2005
units def: 999738
area units: area
species: metaid_0000007
parameter: 509022
volume units: metaid_0000323
reaction: metaid_0000013
parameter: 509016
modified:
  W3 CDTF: Tue May 15 22:41:34 BST 2012
reaction: metaid_0000014
is: dme04710
parameter: 509013
notes: This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2010 The BioModels Team. For more information see the terms of use . To cite BioModels Database, please use Le Novère N., Bornstein B., Broicher A., Courtot M., Donizelli M., Dharuri H., Li L., Sauro H., Schilstra M., Shapiro B., Snoep J.L., Hucka M. (2006) BioModels Database: A Free, Centralized Database of Curated, Published, Quantitative Kinetic Models of Biochemical and Cellular Systems Nucleic Acids Res., 34: D689-D691.
species: metaid_0000010
creator:
  ORG:
    orgname: EMBL-EBI
  n:
    given: Nicolas
    family: Le Novère
rule: 509010
substance units: metaid_0000018
parameter: 509020
units def: 999702
parameter: 509017
time units: metaid_0000017
occurs in: http://identifiers.org/taxonomy/7227
is: MODEL6618294363
length unit: length
name: Smolen2002_CircClock
is version of: GO:0007623
rule: 509011
species: metaid_0000009
parameter: 509014
parameter: 509024
species: metaid_0000008
units def: 999786
units def: metaid_0000017
units def: metaid_0000018
curated: true
parameter: 509021
reaction: metaid_0000011
parameter: 509018
is described by: http://identifiers.org/pubmed/12414672

metaid_0000012
type: Reaction
kinetic law: 999894
modifier: 999882
product: 999870
reactant: 999858
is version of: GO:0006412
fast: false
reversible: false
name: dClk production

metaid_0000010
type: Species
is: O61735
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: metaid_0000005
name: free dClk

metaid_0000005
type: Compartment
is: GO:0005623
constant: true
size: 1.0E-15
spatial dimensions: 3.0

999870
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000009

metaid_0000009
type: Species
has part: O61735
has part: P07663
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.0E-16
initial amount: NaN
in compartment: metaid_0000005

999858
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000007

metaid_0000007
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: metaid_0000005

509025
type: Parameter
constant: true
units: 999786
value: 0.5
name: kdp

999786
type: SBMLUnitsDef
unit: 999798
name: per_hr

999798
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 3600.0
kind: SECOND

999738
type: SBMLUnitsDef
unit: 999774
unit: 999762
unit: 999750
name: nM_per_hr

999774
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 3600.0
kind: SECOND

999762
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: LITRE

999750
type: SBMLUnit
exponent: 1.0
scale: -9
multipler: 1.0
kind: MOLE

509022
type: Parameter
constant: true
units: 999702
value: 0.1
name: K2

999702
type: SBMLUnitsDef
unit: 999726
unit: 999714
name: nM

999726
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: LITRE

999714
type: SBMLUnit
exponent: 1.0
scale: -9
multipler: 1.0
kind: MOLE

metaid_0000013
type: Reaction
kinetic law: 999930
product: 999918
reactant: 999906
is version of: GO:0030163
fast: false
reversible: false
name: Per degradation

999918
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000007

999906
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000008

metaid_0000008
type: Species
is: P07663
constant: false
boundary condition: false
has only substance units: false
initial concentration: 5.0E-16
initial amount: NaN
in compartment: metaid_0000005

509016
type: Parameter
constant: true
units: metaid_0000017
value: 10.0
name: tau1

metaid_0000017
type: SBMLUnitsDef
unit: 999678
name: hour (new default)

999678
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 3600.0
kind: SECOND

metaid_0000014
type: Reaction
kinetic law: 999966
product: 999954
reactant: 999942
is version of: GO:0030163
fast: false
reversible: false
name: dClk degradation

999954
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000007

999942
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000009

509013
type: Parameter
notes: free dClk at time t-tau1
constant: false
units: 999702
value: NaN
name: dClkF_tau1

metaid_0000018
type: SBMLUnitsDef
unit: 999690
name: nanomole (new default)

999690
type: SBMLUnit
exponent: 1.0
scale: -9
multipler: 1.0
kind: MOLE

509020
type: Parameter
constant: true
units: 999702
value: 0.3
name: K1

509017
type: Parameter
constant: true
units: metaid_0000017
value: 10.0
name: tau2

509014
type: Parameter
notes: free dClk at time t-tau2
constant: false
units: 999702
value: NaN
name: dClkF_tau2

509024
type: Parameter
constant: true
units: 999786
value: 0.5
name: kdc

509021
type: Parameter
constant: true
units: 999738
value: 0.25
name: Vsc

metaid_0000011
type: Reaction
kinetic law: 999846
modifier: 999834
product: 999822
reactant: 999810
is version of: GO:0006412
fast: false
reversible: false
name: Per production

999822
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000008

999810
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000007

509018
type: Parameter
constant: true
units: 999738
value: 0.5
name: Vsp