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notes: This a model from the article: Applications of metabolic modelling to plant metabolism. Poolman MG ,Assmus HE, Fell DA J. Exp. Bot. [2004 May; Volume: 55 (Issue: 400 )]: 1177-86 15073223 , Abstract: In this paper some of the general concepts underpinning the computer modelling of metabolic systems are introduced. The difference between kinetic and structural modelling is emphasized, and the more important techniques from both, along with the physiological implications, are described. These approaches are then illustrated by descriptions of other work, in which they have been applied to models of the Calvin cycle, sucrose metabolism in sugar cane, and starch metabolism in potatoes. This model describes the non oxidative Calvin cycle as depicted in Poolman et al; J Exp Bot (2004) 55:1177-1186, fig 2. Reaction E20: E4P + F6P ↔ S7P + GAP, is depicted in the figure, but not included in the model. The light reaction: ADP + P i → ATP, is included in the model, but only mentioned in the figure caption. The parameters and initial concentrations are the same as in Poolman, 1999, Computer Modelling Applied to the Calvin Cycle, PhD Thesis, Oxford Brookes University, Appendix A (available at at http://mudshark.brookes.ac.uk/index.php/Publications/Theses/Mark ) © Mark Poolman (mgpoolman@brookes.ac.uk) 1995-2002 Based on a description by Pettersson 1988, Eur. J. Biochem. 175, 661-672 Differences are: 1 - Reactions assumed by Pettersson to be in equilibrium have fast mass action kinetics. 2 - Introduction of the parameter PGAxpMult to modulate PGA export through TPT. 3 - Introduction of Starch phosphorylase reaction. This file may be freely copied or translated into other formats provided: 1 - This notice is reproduced in its entirety 2 - Published material making use of (information gained from) this model cites at least: (a) Poolman, 1999, Computer Modelling Applied to the Calvin Cycle, PhD Thesis, Oxford Brookes University (b) Poolman, Fell, and Thomas. 2000, Modelling Photosynt…
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metaid_0000043
type: Reaction
kinetic law: 613564
product: 613551
reactant: 613539
reactant: 613526
is version of: GO:0006176
fast: false
reversible: false

513877
type: LocalParameter
value: 0.3

513876
type: LocalParameter
value: 0.014

513875
type: LocalParameter
value: 3500.0

613551
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000007

613539
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000026

613526
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000011

metaid_0000047
type: Reaction
kinetic law: 613720
is version of: http://identifiers.org/ec-code/2.4.1.1
reversible: false
is: R02111
fast: false
reactant: 613684
product: 613708
reactant: 613696

513891
type: LocalParameter
value: 0.05

513890
type: LocalParameter
value: 0.1

513888
type: LocalParameter
value: 40.0

613684
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000030

613708
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000029

613696
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000011