#!/usr/bin/env ruby #require 'xz' #require 'zlib' require 'open3' require 'fileutils' class UniProtTaxonomySplitter @@head = < HEAD @@tail = < TAIL @@rs = ' err @error_file.puts "Failed: #{Time.now} (#{err})" @error_file.puts block.inspect end rdf_entry = @@rs + block.sub(@@rs, '') end end # rdf_file.each(rs) end # Dir::glob.each(rs) end # Zlib::GzipReader end # def rdf2ttl def add_tails @@created_dirs.sort_by{|k,v| k[/\d+/].to_i}.each do |dir, value| $stderr.puts "Fixing files in #{dir} ..." Dir.glob("#{dir}/*").sort.each do |path| File.open(path, "a+") do |file| file.puts @@tail end end end end end # class UniProtTaxonomySplitter uniprot_rdf_dir = ARGV.shift output_dir = ARGV.shift UniProtTaxonomySplitter.new(uniprot_rdf_dir, output_dir)