in taxon
type: ObjectProperty

checksum mapping
type: ObjectProperty
description: Checksums provided by some of our providers are used in lieu of sequence matching to indicate identity
sub property of: related

dependant mapping
type: ObjectProperty
description: Mapping dependent upon another mapping in Ensembl.
sub property of: related

direct mapping
type: ObjectProperty
description: A direct mapping between to an external database entry.
sub property of: related

inferred mapping from transcript
type: ObjectProperty
description: This is a mapping between an ensembl identifier and external identifiers that has been inferred via transcription. Typically this is a mapping from a gene to one of it's transcripts xrefs
sub property of: related

inferred mapping from translation
type: ObjectProperty
description: This is a mapping between an ensembl identifier and external identifiers that has been inferred via translation. Typically this is a mapping from a gene to one of it's translated products. A good example is the mapping of a Ensembl gene id to a UniProt protein id.
sub property of: related

inferred pair mapping
type: ObjectProperty
description: This is a low quality assertion based on a transcript mapping to RefSeq. We infer the association of the Refseq protein to our Ensembl protein.
sub property of: related

misc mapping
type: ObjectProperty
description: Uncategorised mapping
sub property of: related

projection mapping
type: ObjectProperty
description: A mapping taken from one species and applied to another, due to homology.
sub property of: related

sequence match mapping
type: ObjectProperty
description: Mapping based on an exact sequence match.
sub property of: related

located in
type: ObjectProperty

chromosome
type: Class

3prime_overlapping_ncrna
type: Class
subclass of: Ensembl genomic feature
description: Transcripts where ditag and/or published experimental data strongly supports the existence of short non-coding transcripts transcribed from the 3'UTR.

Cytogenetic band
type: Class
subclass of: Restriction
  on property: location
  some values from: Region
description: A cytogenetic band is a region of chromosome that can be seen using a microscope and special stains. The cytogenetic bands are labeled p1, p2, p3, q1, q2, q3, etc., counting from the centromere out toward the telomeres. At higher resolutions, sub-bands can be seen within the bands. The sub-bands are also numbered from the centromere out toward the telomere.

Ensembl genomic feature
type: Class
subclass of: Restriction
  on property: location
  some values from: Region
subclass of: Restriction
  on property: located in
  some values from: Cytogenetic band

IG_C_gene
type: Class
subclass of: Immunoglobulin (Ig) variable chain gene

IG_C_pseudogene
type: Class
subclass of: inactivated immunoglobulin gene

IG_D_gene
type: Class
subclass of: Immunoglobulin (Ig) variable chain gene

IG_J_gene
type: Class
subclass of: Immunoglobulin (Ig) variable chain gene

IG_J_pseudogene
type: Class
subclass of: inactivated immunoglobulin gene

IG_V_gene
type: Class
subclass of: Immunoglobulin (Ig) variable chain gene

IG_V_pseudogene
type: Class
subclass of: inactivated immunoglobulin gene

Immunoglobulin (Ig) variable chain gene
type: Class
subclass of: Ensembl genomic feature
description: Immunoglobulin (Ig) variable chain gene imported or annotated according to the IMGT

LRG_gene
type: Class
subclass of: Ensembl genomic feature
description: Gene in a "Locus Reference Genomic" region known to have disease-related sequence variations.

Mt_rRNA
type: Class
subclass of: Non-coding RNA

Mt_tRNA
type: Class
subclass of: Non-coding RNA

Mt_tRNA_pseudogene
type: Class
subclass of: Non-coding RNAs pseudogene

Non-coding RNA
type: Class
subclass of: Ensembl genomic feature
description: Non-coding RNA predicted using sequences from RFAM and miRBase

Non-coding RNAs pseudogene
type: Class
subclass of: Non-coding RNA
description: Non-coding RNAs predicted to be pseudogenes by the Ensembl pipeline

T-cell receptor (TcrR) gene
type: Class
subclass of: Ensembl genomic feature

TR_C_gene
type: Class
subclass of: T-cell receptor (TcrR) gene

TR_D_gene
type: Class
subclass of: T-cell receptor (TcrR) gene

TR_J_gene
type: Class
subclass of: T-cell receptor (TcrR) gene

TR_J_pseudogene
type: Class
subclass of: inactivated immunoglobulin gene

TR_V_gene
type: Class
subclass of: T-cell receptor (TcrR) gene

TR_V_pseudogene
type: Class
subclass of: inactivated immunoglobulin gene

ambiguous_orf
type: Class
subclass of: Ensembl genomic feature
description: Transcript believed to be protein coding, but with more than one possible open reading frame.

antisense
type: Class
subclass of: Ensembl genomic feature
description: Has transcripts that overlap the genomic span (i.e. exon or introns) of a protein-coding locus on the opposite strand.

artifact
type: Class
subclass of: Ensembl genomic feature
description: Used to tag mistakes in the public databases (Ensembl/SwissProt/Trembl)

disrupted_domain
type: Class
subclass of: Ensembl genomic feature
description: Otherwise viable coding region omitted from this alternatively spliced transcript because the splice variation affects a region coding for a protein domain.

exon
type: Class
subclass of: Ensembl genomic feature
description: An exon is a nucleotide sequence encoded by a gene that remains present within the final mature RNA product of that gene after introns have been removed by RNA splicing.
equivalent to: SIO_010445

inactivated immunoglobulin gene
type: Class
subclass of: Ensembl genomic feature

lincRNA
type: Class
subclass of: Ensembl genomic feature
description: Long, intervening noncoding (linc) RNAs, that can be found in evolutionarily conserved, intergenic regions.

miRNA
type: Class
subclass of: Non-coding RNA

miRNA_pseudogene
type: Class
subclass of: Non-coding RNAs pseudogene

misc_RNA
type: Class
subclass of: Non-coding RNA

misc_RNA_pseudogene
type: Class
subclass of: Non-coding RNAs pseudogene

non_coding
type: Class
subclass of: Ensembl genomic feature
description: Transcript which is known from the literature to not be protein coding.

non_stop_decay
type: Class
subclass of: Ensembl genomic feature
description: Transcripts that have polyA features (including signal) without a prior stop codon in the CDS, i.e. a non-genomic polyA tail attached directly to the CDS without 3' UTR. These transcripts are subject to degradation.

nonsense mediated decay
type: Class
subclass of: Ensembl genomic feature
description: If the coding sequence (following the appropriate reference) of a transcript finishes >50bp from a downstream splice site then it is tagged as NMD. If the variant does not cover the full reference coding sequence then it is annotated as NMD if NMD is unavoidable i.e. no matter what the exon structure of the missing portion is the transcript will be subject to NMD.

polymorphic_pseudogene
type: Class
subclass of: pseudogene
description: Pseudogene owing to a SNP/DIP but in other individuals/haplotypes/strains the gene is translated.

processed_pseudogene
type: Class
subclass of: pseudogene
description: Pseudogene that lack introns and is thought to arise from reverse transcription of mRNA followed by reinsertion of DNA into the genome.

processed_transcript
type: Class
subclass of: Ensembl genomic feature
description: Doesn't contain an ORF.

protein
type: Class
subclass of: Ensembl genomic feature
description: A protein is an organic polymer that is composed of one or more linear polymers of amino acids.

protein_coding
type: Class
subclass of: Ensembl genomic feature
description: Contains an open reading frame (ORF).
equivalent to: SIO_000985

pseudogene
type: Class
subclass of: Ensembl genomic feature
description: Have homology to proteins but generally suffer from a disrupted coding sequence and an active homologous gene can be found at another locus. Sometimes these entries have an intact coding sequence or an open but truncated ORF, in which case there is other evidence used (for example genomic polyA stretches at the 3' end) to classify them as a pseudogene. Can be further classified as one of the following.

rRNA
type: Class
subclass of: Non-coding RNA

rRNA_pseudogene
type: Class
subclass of: Non-coding RNAs pseudogene

retained intron
type: Class
subclass of: Ensembl genomic feature
description: Alternatively spliced transcript believed to contain intronic sequence relative to other, coding, variants.

retrotransposed
type: Class
subclass of: Ensembl genomic feature
description: Pseudogene owing to a reverse transcribed and re-inserted sequence.

scRNA_pseudogene
type: Class
subclass of: Non-coding RNAs pseudogene

sense_intronic
type: Class
subclass of: Ensembl genomic feature
description: Long non-coding transcript in introns of a coding gene that does not overlap any exons.

sense_overlapping
type: Class
subclass of: Ensembl genomic feature
description: Long non-coding transcript that contains a coding gene in its intron on the same strand.

snRNA
type: Class
subclass of: Non-coding RNA

snRNA_pseudogene
type: Class
subclass of: Non-coding RNAs pseudogene

snoRNA
type: Class
subclass of: Non-coding RNA

snoRNA_pseudogene
type: Class
subclass of: Non-coding RNAs pseudogene

tRNA_pseudogene
type: Class
subclass of: Non-coding RNAs pseudogene

transcribed_processed_pseudogene
type: Class
subclass of: pseudogene
description: Pseudogene where protein homology or genomic structure indicates a pseudogene, but the presence of locus-specific transcripts indicates expression.

transcribed_unprocessed_pseudogene
type: Class
subclass of: pseudogene
description: Pseudogene where protein homology or genomic structure indicates a pseudogene, but the presence of locus-specific transcripts indicates expression.

transcript
type: Class
subclass of: Ensembl genomic feature
description: An RNA transcript is an RNA molecule that is produced from transcription of a nucleic acid template.
equivalent to: SIO_010450

unitary_pseudogene
type: Class
subclass of: pseudogene
description: A species specific unprocessed pseudogene without a parent gene, as it has an active orthologue in another species.

unprocessed_pseudogene
type: Class
subclass of: pseudogene
description: Pseudogene that can contain introns since produced by gene duplication.