578694
reactant: 578706
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of caffeate
type: Reaction

603044
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

584245
stoichiometry: 1.0
species: M UREA LBRACKET C RBRACKET
type: SpeciesReference

616582
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

600018
stoichiometry: 3.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

584197
stoichiometry: 1.0
species: M CAFFEATE LBRACKET C RBRACKET
type: SpeciesReference

R ACONITATEDEHYDR DASH RXN
reversible: true
product: 596923
type: Reaction
is: ACONTa
fast: false
product: 596911
is: ACONITATEDEHYDR-RXN
notes: GENE_ASSOCIATION: ACIAD2395 or ACIAD3090 or ACIAD2755
name: aconitase (citrate hydro-lyase)
reactant: 596899

M VAL LBRACKET C RBRACKET
initial concentration: NaN
has only substance units: false
initial amount: NaN
boundary condition: false
name: l-valine
type: Species
is: val-L
is: VAL
in compartment: 570138
constant: false
is: C00183

599994
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

584989
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET
type: SpeciesReference

614273
stoichiometry: 1.0
species: M SULFATE LBRACKET C RBRACKET
type: SpeciesReference

617007
stoichiometry: 1.0
species: M G3P LBRACKET C RBRACKET
type: SpeciesReference

597260
stoichiometry: 1.0
species: M DPG LBRACKET C RBRACKET
type: SpeciesReference

606942
stoichiometry: 1.0
species: M C18 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: SpeciesReference

R PHENYLALANINE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
product: 604524
is: PHETRS
notes: GENE_ASSOCIATION: ACIAD3041 and ACIAD3042
is: PHENYLALANINE--TRNA-LIGASE-RXN
reactant: 604512
reactant: 604500
product: 604548
fast: false
name: phenylalanine--trna ligase
reactant: 604488
reversible: false
product: 604536

579464
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

579741
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

613604
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

587589
stoichiometry: 1.0
species: M URIDINE LBRACKET C RBRACKET
type: SpeciesReference

M ARG LBRACKET C RBRACKET
is: ARG
has only substance units: false
boundary condition: false
type: Species
constant: false
in compartment: 570138
initial amount: NaN
is: C00062
name: l-arginine
is: arg-L
initial concentration: NaN

618731
stoichiometry: 1.0
species: M 2 DASH KETO DASH 3 DASH DEOXY DASH 6 DASH P DASH GLUCONATE LBRACKET C RBRACKET
type: SpeciesReference

598525
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET
type: SpeciesReference

R HISTIDPHOS DASH RXN
fast: false
notes: GENE_ASSOCIATION:
reactant: 583111
type: Reaction
reactant: 583123
product: 583147
is: HISTP
name: histidinol-phosphatase
reversible: false
is: HISTIDPHOS-RXN
product: 583135

571834
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH ETHANOL DASH AMINE
product: 582557
product: 582545
name: transport of ethanol-amine [extraorganism;cytosol](secondary symport)
fast: false
reactant: 582521
is: TRANS-RXNIM-5926
reactant: 582533
is: ETHAt2pp
notes: GENE_ASSOCIATION: ACIAD1458
reversible: false
type: Reaction

607724
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET
type: SpeciesReference

607519
stoichiometry: 0.07
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

601743
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

615524
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET
type: SpeciesReference

593608
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

588502
stoichiometry: 1.0
species: M UDP DASH AAGM DASH DIAMINOHEPTANEDIOATE LBRACKET C RBRACKET
type: SpeciesReference

570390
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans,cis-tetradec-2,4-enoyl-acp
type: Species

608013
stoichiometry: 1.0
species: M L DASH 1 DASH PHOSPHATIDYL DASH GLYCEROL LBRACKET C RBRACKET
type: SpeciesReference

612411
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

613543
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

611617
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

607664
stoichiometry: 1.0
species: M C6 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

R 4 PERIOD 2 PERIOD 1 PERIOD 41 DASH RXN
notes: GENE_ASSOCIATION: ACIAD0130
product: 618429
fast: false
product: 618405
is: 4.2.1.41-RXN
product: 618417
type: Reaction
name: 5-dehydro-4-deoxyglucarate dehydratase
reversible: false
reactant: 618393

606353
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

605801
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M C14 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
constant: false
initial concentration: NaN
name: trans-tetradec-2-enoyl-acp
in compartment: 570138
is: tmrs2eACP
has only substance units: false
initial amount: NaN
boundary condition: false
type: Species
is: C05760

R 1 PERIOD 14 PERIOD 12 PERIOD 1 DASH RXN
is: 1.14.12.1-RXN
reversible: false
product: 612086
product: 612110
product: 612074
product: 612098
reactant: 612062
reactant: 612038
type: Reaction
fast: false
notes: GENE_ASSOCIATION: ACIAD2669 and ACIAD2670 and ACIAD2671
reactant: 612050
name: anthranilate 1,2-dioxygenase (deaminating, decarboxylating)

573303
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

573279
stoichiometry: 1.0
species: M C14 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: SpeciesReference

M SUC DASH COA LBRACKET C RBRACKET
constant: false
initial amount: NaN
is: C00091
initial concentration: NaN
is: SUC-COA
is: succoa
has only substance units: false
name: succinyl-coa
type: Species
in compartment: 570138
boundary condition: false

585845
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

595853
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

598284
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R GLUTAMATE DASH N DASH ACETYLTRANSFERASE DASH RXN
name: glutamate n-acetyltransferase
fast: false
notes: GENE_ASSOCIATION: ACIAD0650
reactant: 584605
is: ACODA
type: Reaction
reactant: 584593
product: 584629
product: 584617
is: GLUTAMATE-N-ACETYLTRANSFERASE-RXN
reversible: false

577804
stoichiometry: 1.0
species: M 3 DASH KETOBUTYRATE LBRACKET C RBRACKET
type: SpeciesReference

615740
stoichiometry: 1.0
species: M C18 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

M AMMONIUM LBRACKET C RBRACKET
initial amount: NaN
is: AMMONIUM
in compartment: 570138
initial concentration: NaN
has only substance units: false
name: nh4+
constant: false
boundary condition: false
is: nh4
is: C01342
type: Species

574011
stoichiometry: 1.0
species: M UROCANATE LBRACKET C RBRACKET
type: SpeciesReference

608616
stoichiometry: 0.04
species: M ASN DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

590186
stoichiometry: 1.0
species: M AMINO DASH DIOXY DASH PHOSPHORIBITYLAMINO DASH PYR LBRACKET C RBRACKET
type: SpeciesReference

616935
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

570956
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: PYRIDOXAL_PHOSPHATE
type: Species

606798
stoichiometry: 1.0
species: M CPD DASH 650 LBRACKET C RBRACKET
type: SpeciesReference

599189
stoichiometry: 1.0
species: M C18 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: SpeciesReference

570727
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-hydroxyhexadec-7-enoyl-coa
type: Species

615200
stoichiometry: 1.0
species: M BENZYL DASH ALCOHOL LBRACKET E RBRACKET
type: SpeciesReference

570246
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans-7-carboxyhept-2-enoyl-coa
type: Species

581110
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

590536
stoichiometry: 1.0
species: M HS LBRACKET C RBRACKET
type: SpeciesReference

594503
stoichiometry: 1.0
species: M DCMP LBRACKET C RBRACKET
type: SpeciesReference

R UDP DASH NACMURALA DASH GLU DASH LIG DASH RXN
reactant: 603826
notes: GENE_ASSOCIATION: ACIAD0270
reversible: false
is: UDP-NACMURALA-GLU-LIG-RXN
type: Reaction
reactant: 603838
product: 603874
is: UAMAGS
product: 603886
name: udp-n-acetylmuramoylalanine--d-glutamate ligase
fast: false
reactant: 603850
product: 603862

618164
stoichiometry: 1.0
species: M DIHYDROXY DASH ACETONE DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

573061
stoichiometry: 1.0
species: M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET P RBRACKET
type: SpeciesReference

602852
stoichiometry: 1.0
species: M 4 DASH AMINO DASH BUTYRATE LBRACKET C RBRACKET
type: SpeciesReference

604054
stoichiometry: 1.0
species: M FORMATE LBRACKET E RBRACKET
type: SpeciesReference

R GLYC3PDEHYDROG DASH RXN
fast: false
product: 600187
name: glycerol-3-phosphate dehydrogenase
is: G3PD5
is: GLYC3PDEHYDROG-RXN
reactant: 600163
reactant: 600151
product: 600175
notes: GENE_ASSOCIATION: ACIAD2844
type: Reaction
reversible: false

588178
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

576611
stoichiometry: 1.0
species: M CPD DASH 104 LBRACKET P RBRACKET
type: SpeciesReference

587601
stoichiometry: 1.0
species: M RIBOSE LBRACKET C RBRACKET
type: SpeciesReference

598212
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

615428
stoichiometry: 1.0
species: M DGDP LBRACKET C RBRACKET
type: SpeciesReference

R C5 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
reactant: 587505
product: 587541
reactant: 587517
name: hydroxyacyl-coa dehydrogenase (c5:0)
product: 587529
is: OHACYL-COA-DEHYDROG-RXN
reversible: false
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
type: Reaction
fast: false

M D DASH ALA DASH D DASH ALA LBRACKET C RBRACKET
initial amount: NaN
has only substance units: false
initial concentration: NaN
is: alaala
in compartment: 570138
type: Species
boundary condition: false
name: d-alanyl-d-alanine
constant: false
is: D-ALA-D-ALA
is: C00993

612387
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

616875
stoichiometry: 1.0
species: M 4 DASH AMINO DASH BUTYRATE LBRACKET E RBRACKET
type: SpeciesReference

574083
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

590247
stoichiometry: 1.0
species: M 3 DASH CARBOXY DASH 3 DASH HYDROXY DASH ISOCAPROATE LBRACKET C RBRACKET
type: SpeciesReference

605667
stoichiometry: 1.0
species: 570883
type: SpeciesReference

613907
stoichiometry: 1.0
species: M CAFFEOYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

613278
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

577780
product: 577804
reactant: 577792
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of acetoacetate [extraorganism;cytosol](passive)
type: Reaction

600139
stoichiometry: 1.0
species: 570150
type: SpeciesReference

R C18 COLON 0 DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
product: 606954
name: 3hydroxyacyl-acp dehydratase (c18:0)
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
is: 3HAD180
fast: false
type: Reaction
product: 606966
notes: GENE_ASSOCIATION: ACIAD1381
reactant: 606942
reversible: false

585737
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M ACETYL DASH ACP LBRACKET C RBRACKET
type: Species
boundary condition: false
in compartment: 570138
initial concentration: NaN
is: ACETYL-ACP
constant: false
initial amount: NaN
has only substance units: false
name: acetyl-acp
is: acACP

603982
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

614431
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

603320
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

597537
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

M L DASH ASPARTATE LBRACKET E RBRACKET
in compartment: 570126
name: l-aspartate
is: C00049
initial concentration: NaN
boundary condition: false
is: L-ASPARTATE
is: asp-L
constant: false
type: Species
has only substance units: false
initial amount: NaN

578934
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

597489
stoichiometry: 1.0
species: M HCO3 LBRACKET C RBRACKET
type: SpeciesReference

M DIAMINONONANOATE LBRACKET C RBRACKET
initial concentration: NaN
is: C01037
is: dann
type: Species
has only substance units: false
boundary condition: false
constant: false
in compartment: 570138
name: 7,8-diaminononanoate
is: DIAMINONONANOATE
initial amount: NaN

R TRIOSEPISOMERIZATION DASH RXN
product: 618164
reactant: 618152
notes: GENE_ASSOCIATION: ACIAD0363
is: TRIOSEPISOMERIZATION-RXN
is: TPI
fast: false
reversible: true
name: triosephosphate isomerase
type: Reaction

584617
stoichiometry: 1.0
species: M ACETYL DASH GLU LBRACKET C RBRACKET
type: SpeciesReference

R RXN0 DASH 902
is: RXN0-902
product: 571906
name: hypoxanthine dehydrogenase
product: 571918
is: HXAND
fast: false
reactant: 571870
notes: GENE_ASSOCIATION: ACIAD2466 and ACIAD2467 and ACIAD2468
reactant: 571882
reactant: 571894
type: Reaction
reversible: true

593572
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R GUANIDINOBUTYRASE DASH RXN
product: 584257
is: GUANIDINOBUTYRASE-RXN
product: 584245
reversible: false
name: guanidinobutyrase
type: Reaction
reactant: 584233
reactant: 584221
fast: false
notes: GENE_ASSOCIATION: ACIAD1299

603694
stoichiometry: 1.0
species: M CHARGED DASH TYR DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

R DTDPGLUCOSEPP DASH RXN
is: DTDPGLUCOSEPP-RXN
product: 576442
product: 576430
is: G1PTT
notes: GENE_ASSOCIATION: ACIAD0079
name: glucose-1-phosphate thymidylyltransferase
reactant: 576406
reversible: true
fast: false
type: Reaction
reactant: 576418

583387
stoichiometry: 1.0
species: M SUC DASH COA LBRACKET C RBRACKET
type: SpeciesReference

R RIBOFLAVINKIN DASH RXN
notes: GENE_ASSOCIATION: ACIAD0023
reactant: 603898
fast: false
type: Reaction
reversible: true
reactant: 603910
is: RIBOFLAVINKIN-RXN
name: riboflavin kinase
product: 603934
product: 603922
is: RBFK

617682
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

M QUINATE LBRACKET E RBRACKET
is: QUINATE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: quinate
type: Species

603188
stoichiometry: 1.0
species: M HYDROXYMETHYLBILANE LBRACKET C RBRACKET
type: SpeciesReference

576767
stoichiometry: 1.0
species: 570198
type: SpeciesReference

572483
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

M D DASH CYSTEINE LBRACKET C RBRACKET
boundary condition: false
initial amount: NaN
is: D-CYSTEINE
in compartment: 570138
name: d-cysteine
initial concentration: NaN
type: Species
is: cys-D
constant: false
has only substance units: false
is: C00793

605777
stoichiometry: 1.0
species: M PRO LBRACKET C RBRACKET
type: SpeciesReference

615284
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R PREPHENATEDEHYDROG DASH RXN
notes: GENE_ASSOCIATION: ACIAD2222
reversible: false
product: 583739
fast: false
type: Reaction
reactant: 583714
reactant: 583726
is: PREPHENATEDEHYDROG-RXN
product: 583765
product: 583752
name: prephenate dehydrogenase
is: PPND

602226
stoichiometry: 1.0
species: M C8 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

592680
stoichiometry: 1.67
species: M TDP LBRACKET C RBRACKET
type: SpeciesReference

R UDPHYDROXYMYRGLUCOSAMNACETYLTRANS DASH RXN
reversible: true
is: UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-RXN
notes: GENE_ASSOCIATION: ACIAD1380
fast: false
product: 612472
product: 612484
reactant: 612448
reactant: 612460
type: Reaction
name: udp-3-o-[3-hydroxylauroyl] glucosamine n-acyltransferase
is: U23GAAT

606702
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

599105
stoichiometry: 1.0
species: M HIS LBRACKET C RBRACKET
type: SpeciesReference

581436
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

613871
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

580202
stoichiometry: 1.0
species: M CTP LBRACKET C RBRACKET
type: SpeciesReference

602804
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

596563
stoichiometry: 1.0
species: M XANTHINE LBRACKET C RBRACKET
type: SpeciesReference

M AMINO DASH HYDROXYMETHYL DASH METHYLPYRIMIDINE DASH PP LBRACKET C RBRACKET
is: 2mahmp
type: Species
is: AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP
name: 4-amino-5-hydroxymethyl-2-methylpyrimidine-pyrophosphate
initial amount: NaN
constant: false
boundary condition: false
initial concentration: NaN
in compartment: 570138
has only substance units: false
is: C04752

M C6 COLON 2 LPAREN C2 COMMA C4 RPAREN LBRACKET E RBRACKET
is: CPD-3624
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: sorbate
type: Species

M VANILLATE LBRACKET C RBRACKET
name: vanillate
boundary condition: false
constant: false
is: C06672
in compartment: 570138
initial amount: NaN
has only substance units: false
is: VANILLATE
type: Species
initial concentration: NaN

616366
stoichiometry: 1.0
species: M CPD DASH 110 LBRACKET C RBRACKET
type: SpeciesReference

596418
reactant: 596430
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-tryptophan
type: Reaction

588382
stoichiometry: 1.0
species: M CATECHOL LBRACKET C RBRACKET
type: SpeciesReference

579633
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

604836
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

605933
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

570523
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-hydroxypentanoyl-coa
type: Species

R PSERTRANSAMPYR DASH RXN
reactant: 580346
is: OHPBAT
notes: GENE_ASSOCIATION: ACIAD2647
is: PSERTRANSAMPYR-RXN
product: 580370
name: phosphohydroxythreonine transaminase
reactant: 580358
fast: false
reversible: true
product: 580382
type: Reaction

591235
stoichiometry: 1.0
species: M GMP LBRACKET C RBRACKET
type: SpeciesReference

M 2 COMMA 3 DASH DIHYDRODIPICOLINATE LBRACKET C RBRACKET
is: 2,3-dihydrodipicolinate
type: Species
constant: false
is: 23dhdp
initial concentration: NaN
initial amount: NaN
name: 2,3-dihydrodipicolinate
boundary condition: false
is: C03340
in compartment: 570138
has only substance units: false

594382
stoichiometry: 1.0
species: M LL DASH DIAMINOPIMELATE LBRACKET C RBRACKET
type: SpeciesReference

594624
stoichiometry: 1.0
species: M 3 DASH HYDROXYPIMELOYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

612977
stoichiometry: 1.0
species: M DEHYDROQUINATE LBRACKET C RBRACKET
type: SpeciesReference

571028
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: N-ACETYLGLUTAMATE_SEMIALDEHYDE
type: Species

583171
stoichiometry: 1.0
species: 570859
type: SpeciesReference

585037
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

576551
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

M CHARGED DASH ASP DASH TRNAS LBRACKET C RBRACKET
initial concentration: NaN
has only substance units: false
constant: false
is: C02984
boundary condition: false
in compartment: 570138
type: Species
is: asptrna
is: CHARGED-ASP-TRNAS
initial amount: NaN
name: charged aspartate trna

M SUC LBRACKET C RBRACKET
has only substance units: false
is: succ
initial amount: NaN
constant: false
initial concentration: NaN
type: Species
boundary condition: false
name: succinate
is: C00042
is: SUC
in compartment: 570138

597661
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

610666
stoichiometry: 1.0
species: 571220
type: SpeciesReference

572868
stoichiometry: 2.0
species: M GLUTATHIONE LBRACKET C RBRACKET
type: SpeciesReference

610593
stoichiometry: 1.0
species: M SHIKIMATE LBRACKET E RBRACKET
type: SpeciesReference

598996
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

585145
stoichiometry: 1.0
species: 570571
type: SpeciesReference

R GDPREDUCT DASH RXN
reactant: 618344
fast: false
product: 618368
product: 618356
product: 618381
name: gdp reductase
reactant: 618332
type: Reaction
is: GDPREDUCT-RXN
reversible: true
is: RNDR2
notes: GENE_ASSOCIATION: ACIAD0724 and ACIAD0722

598320
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

R C16 COLON 1 LPAREN C7 RPAREN DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
product: 618068
reactant: 618056
reactant: 618044
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
is: ENOYL-COA-HYDRAT-RXN
fast: false
reversible: false
name: enoyl-coa hydratase (c16:1(c7))
type: Reaction

580394
reactant: 580406
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of octanoate
type: Reaction

R RXN0 DASH 901
reactant: 616414
fast: false
type: Reaction
reactant: 616426
is: XAND
reversible: true
reactant: 616438
product: 616462
is: RXN0-901
product: 616450
notes: GENE_ASSOCIATION: ACIAD2466 and ACIAD2467 and ACIAD2468
name: xanthine dehydrogenase

599021
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

R GLUTRACE DASH RXN
product: 605463
reactant: 605451
notes: GENE_ASSOCIATION: ACIAD3257
is: GLUTRACE-RXN
is: GLUR
fast: false
reversible: true
name: glutamate racemase
type: Reaction

599310
stoichiometry: 1.0
species: M ANTHRANILATE LBRACKET C RBRACKET
type: SpeciesReference

M 3 DASH HYDROXYADIPYL DASH COA LBRACKET C RBRACKET
is: C14145
type: Species
has only substance units: false
in compartment: 570138
initial concentration: NaN
name: 3-hydroxyadipyl-coa
boundary condition: false
is: 3-HYDROXYADIPYL-COA
initial amount: NaN
constant: false

R TRANS DASH RXNIM DASH 5720
product: 615656
reactant: 615644
notes: GENE_ASSOCIATION: ACIAD2958 or ACIAD0245 or ACIAD2534
is: TRANS-RXN0-206
is: NH4tpp
fast: false
reversible: true
name: transport of nh4+ [extraorganism;cytosol](passive)
type: Reaction

593463
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

580310
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

581544
stoichiometry: 1.0
species: M CHORISMATE LBRACKET C RBRACKET
type: SpeciesReference

602009
stoichiometry: 1.0
species: M FRU1P LBRACKET C RBRACKET
type: SpeciesReference

586675
stoichiometry: 1.0
species: M CHORISMATE LBRACKET C RBRACKET
type: SpeciesReference

605885
stoichiometry: 1.0
species: 571184
type: SpeciesReference

610340
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

604620
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

592874
product: 592898
reactant: 592886
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of propionate [extraorganism;cytosol](passive)
type: Reaction

M L DASH LACTATE LBRACKET C RBRACKET
is: C00186
initial concentration: NaN
name: lactate
in compartment: 570138
is: lac-L
type: Species
is: L-LACTATE
boundary condition: false
has only substance units: false
constant: false
initial amount: NaN

615800
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

609147
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

572591
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

604788
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

603477
stoichiometry: 1.0
species: 570390
type: SpeciesReference

585629
stoichiometry: 0.149
species: M C18 COLON 1 LPAREN C9 RPAREN DASH COA LBRACKET C RBRACKET
type: SpeciesReference

615176
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

R ASPCARBTRANS DASH RXN
reactant: 590452
notes: GENE_ASSOCIATION: ACIAD1270 and ACIAD1271
reactant: 590440
product: 590464
is: ASPCT
type: Reaction
reversible: false
product: 590476
is: ASPCARBTRANS-RXN
fast: false
name: aspartate carbamoyltransferase

R PABASYN DASH RXN
product: 618032
name: 4-amino-4-deoxychorismate synthase
fast: false
reversible: true
notes: GENE_ASSOCIATION: ACIAD0665 and ACIAD2461
type: Reaction
reactant: 617996
product: 618020
is: PABASYN-RXN
is: ADCS
reactant: 618008

597428
stoichiometry: 1.0
species: M SO3 LBRACKET C RBRACKET
type: SpeciesReference

594176
stoichiometry: 1.0
species: M QUINATE LBRACKET P RBRACKET
type: SpeciesReference

601258
reactant: 601270
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-alanine
type: Reaction

606414
reactant: 606426
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of sebacate
type: Reaction

617574
stoichiometry: 1.0
species: M VANILLIN LBRACKET C RBRACKET
type: SpeciesReference

574433
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

584089
stoichiometry: 1.0
species: M URACIL LBRACKET C RBRACKET
type: SpeciesReference

580918
stoichiometry: 1.0
species: M C10 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

594732
stoichiometry: 1.0
species: M CPD DASH 618 LBRACKET C RBRACKET
type: SpeciesReference

586518
stoichiometry: 1.0
species: 571148
type: SpeciesReference

571136
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: WAX-ESTER_W
type: Species

588490
stoichiometry: 1.0
species: M D DASH ALA DASH D DASH ALA LBRACKET C RBRACKET
type: SpeciesReference

579525
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

597725
stoichiometry: 1.0
species: M C10 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

617344
stoichiometry: 1.0
species: 571100
type: SpeciesReference

618695
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

589752
stoichiometry: 1.0
species: M SULFATE LBRACKET C RBRACKET
type: SpeciesReference

610508
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

586230
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

572639
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH AMP LBRACKET C RBRACKET
type: SpeciesReference

582375
stoichiometry: 3.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

600247
stoichiometry: 1.0
species: M C12 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

R C14 COLON 0 DASH COA DASH DEHYDROGENASE DASH RXN
product: 598671
reactant: 598658
fast: false
is: ACOAD6f
reversible: false
is: ACYLCOADEHYDROG-RXN
product: 598683
type: Reaction
name: acyl-coa dehydrogenase (c14:0)
reactant: 598645
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566

594273
stoichiometry: 1.0
species: M DEOXYADENOSINE LBRACKET C RBRACKET
type: SpeciesReference

612014
stoichiometry: 1.0
species: M CPD DASH 1136 LBRACKET C RBRACKET
type: SpeciesReference

612868
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

580286
stoichiometry: 1.0
species: M DEOXYINOSINE LBRACKET C RBRACKET
type: SpeciesReference

599466
product: 599514
reactant: 599502
reactant: 599490
reactant: 599478
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: generic fatty acid of wax assembly
type: Reaction

607446
stoichiometry: 0.08
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET
type: SpeciesReference

M TYR LBRACKET C RBRACKET
type: Species
name: l-tyrosine
is: C00082
in compartment: 570138
is: tyr-L
boundary condition: false
initial concentration: NaN
constant: false
has only substance units: false
initial amount: NaN
is: TYR

614704
reactant: 614717
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of tricarballylate
type: Reaction

589860
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

598633
stoichiometry: 1.0
species: M CATECHOL LBRACKET C RBRACKET
type: SpeciesReference

586122
stoichiometry: 1.0
species: 571052
type: SpeciesReference

575046
stoichiometry: 1.0
species: M GLUTAMATE DASH 1 DASH SEMIALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

617199
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET
type: SpeciesReference

596382
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

573759
stoichiometry: 1.0
species: M CTP LBRACKET C RBRACKET
type: SpeciesReference

586194
stoichiometry: 2.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R 2 DASH OCTAPRENYL DASH 6 DASH METHOXYPHENOL DASH HYDROX DASH RXN
reactant: 599586
type: Reaction
is: 2-OCTAPRENYL-6-METHOXYPHENOL-HYDROX-RXN
reversible: false
fast: false
product: 599598
product: 599610
notes: GENE_ASSOCIATION: ACIAD1127
reactant: 599574
is: OMPHHX
name: 2-octaprenyl-6-methoxyphenol hydroxylase

613326
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: SpeciesReference

591343
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

592234
stoichiometry: 1.0
species: M CYS DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

582894
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

610232
stoichiometry: 1.0
species: M AMINO DASH HYDROXYMETHYL DASH METHYL DASH PYR DASH P LBRACKET C RBRACKET
type: SpeciesReference

571088
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-hydroxyhexadec-7-enoyl-acp
type: Species

578501
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

616005
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

610882
stoichiometry: 1.0
species: M LIPOYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

598887
stoichiometry: 1.0
species: M ALA DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

585254
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M 2 DASH ACETO DASH LACTATE LBRACKET C RBRACKET
type: Species
name: 2-aceto-lactate
boundary condition: false
has only substance units: false
is: alac-S
initial amount: NaN
is: C06010
constant: false
is: 2-ACETO-LACTATE
in compartment: 570138
initial concentration: NaN

587036
stoichiometry: 1.0
species: 571172
type: SpeciesReference

611966
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

M GLC LBRACKET P RBRACKET
type: Species
constant: false
is: GLC
initial concentration: NaN
boundary condition: false
in compartment: 570114
is: glc-D
has only substance units: false
name: beta-d-glucose
initial amount: NaN
is: C00031

R NICOTINATEPRIBOSYLTRANS DASH RXN
reversible: false
product: 605018
notes: GENE_ASSOCIATION: ACIAD3562
product: 605030
reactant: 605006
reactant: 604994
reactant: 604982
product: 605054
product: 605042
is: NICOTINATEPRIBOSYLTRANS-RXN
reactant: 604970
type: Reaction
name: nicotinate phosphoribosyltransferase
fast: false
is: NAMNPP

602912
stoichiometry: 1.0
species: M C18 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

584833
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

589968
stoichiometry: 1.0
species: M C18 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

602154
stoichiometry: 1.0
species: 570499
type: SpeciesReference

579573
stoichiometry: 1.0
species: M PRO LBRACKET E RBRACKET
type: SpeciesReference

M SHIKIMATE LBRACKET E RBRACKET
initial amount: NaN
in compartment: 570126
constant: false
is: skm
type: Species
is: C00493
boundary condition: false
is: SHIKIMATE
has only substance units: false
name: shikimate
initial concentration: NaN

571762
stoichiometry: 1.0
species: 570378
type: SpeciesReference

616089
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

573169
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

R FORMYLTHFDEFORMYL DASH RXN
reactant: 615608
type: Reaction
name: formyltetrahydrofolate deformylase
notes: GENE_ASSOCIATION: ACIAD2554 or ACIAD0505
is: FTHFD
product: 615632
product: 615620
is: FORMYLTHFDEFORMYL-RXN
fast: false
reversible: false
reactant: 615596

582798
stoichiometry: 1.0
species: M PYRUVATE LBRACKET E RBRACKET
type: SpeciesReference

616656
stoichiometry: 1.0
species: M DIHYDRO DASH NEO DASH PTERIN LBRACKET C RBRACKET
type: SpeciesReference

606137
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET
type: SpeciesReference

595961
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

603754
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

589271
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

618092
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

611725
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

R C4 COLON 0 DASH 3OXOACP DASH SYNTHASE DASH RXN
type: Reaction
reactant: 589187
product: 589211
name: 3oxoacyl-acp synthase (c4:0)
product: 589223
is: KAS14
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
fast: false
reversible: false
product: 589199
is: 3-OXOACYL-ACP-SYNTH-RXN
reactant: 589175

597151
stoichiometry: 1.0
species: M CPD DASH 371 LBRACKET C RBRACKET
type: SpeciesReference

587697
stoichiometry: 1.0
species: M DATP LBRACKET C RBRACKET
type: SpeciesReference

572519
stoichiometry: 1.0
species: M PRO LBRACKET C RBRACKET
type: SpeciesReference

615632
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET
type: SpeciesReference

604391
reactant: 604403
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of butanoate
type: Reaction

R THI DASH P DASH SYN DASH RXN
is: THI-P-SYN-RXN
name: thiamine-phosphate pyrophosphorylase
is: TMPPP
reactant: 595610
notes: GENE_ASSOCIATION: ACIAD1200
reversible: true
fast: false
product: 595622
reactant: 595598
type: Reaction
product: 595634

602744
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

596791
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

578585
stoichiometry: 1.0
species: M CONIFERYL DASH ALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

574373
stoichiometry: 1.0
species: M D DASH SEDOHEPTULOSE DASH 7 DASH P LBRACKET C RBRACKET
type: SpeciesReference

R HOMOSERKIN DASH RXN
type: Reaction
product: 609364
is: HSK
is: HOMOSERKIN-RXN
name: homoserine kinase
fast: false
reactant: 609340
reactant: 609328
product: 609352
notes: GENE_ASSOCIATION: ACIAD0834 or ACIAD1457 or ACIAD3403
reversible: true

571618
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

M UROPORPHYRINOGEN DASH III LBRACKET C RBRACKET
constant: false
type: Species
name: uroporphyrinogen-iii
is: UROPORPHYRINOGEN-III
boundary condition: false
initial concentration: NaN
in compartment: 570138
is: uppg3
initial amount: NaN
has only substance units: false
is: C01051

M DEOXYURIDINE LBRACKET C RBRACKET
is: C00526
initial amount: NaN
has only substance units: false
constant: false
is: duri
type: Species
is: DEOXYURIDINE
in compartment: 570138
initial concentration: NaN
boundary condition: false
name: deoxyuridine

570450
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: L-PHOSPHATIDATE_TAG
type: Species

574650
stoichiometry: 1.0
species: M DGTP LBRACKET C RBRACKET
type: SpeciesReference

570619
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: VITAMIN_K_{2}
type: Species

611014
stoichiometry: 0.002
species: 571112
type: SpeciesReference

M 6 DASH CARBOXYHEX DASH 2 DASH ENOYL DASH COA LBRACKET C RBRACKET
constant: false
has only substance units: false
boundary condition: false
in compartment: 570138
is: 6-CARBOXYHEX-2-ENOYL-COA
type: Species
name: 6-carboxyhex-2-enoyl-coa
initial concentration: NaN
is: C06723
initial amount: NaN

612520
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

607592
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1949107276#R_H2NEOPTERINP3PYROPHOSPHOHYDRO_DASH_RXN
reactant: 601126
type: Reaction
reversible: false
product: 601162
notes: GENE_ASSOCIATION:
name: dihydroneopterin triphosphate pyrophosphatase
product: 601150
fast: false
reactant: 601138
is: DNTPPA
is: H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN

591596
stoichiometry: 1.0
species: M GLC DASH D DASH LACTONE LBRACKET P RBRACKET
type: SpeciesReference

614912
stoichiometry: 1.0
species: M UTP LBRACKET C RBRACKET
type: SpeciesReference

617115
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

M SUBERATE LBRACKET C RBRACKET
is: C08278
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: suberate
type: Species

601634
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET E RBRACKET
type: SpeciesReference

M N DASH ACETYL DASH D DASH GLUCOSAMINE DASH 1 DASH P LBRACKET C RBRACKET
is: N-ACETYL-D-GLUCOSAMINE-1-P
boundary condition: false
type: Species
has only substance units: false
initial amount: NaN
name: n-acetyl-glucosamine-1-phosphate
initial concentration: NaN
in compartment: 570138
is: acgam1p
constant: false
is: C04256

614792
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

572928
stoichiometry: 1.0
species: M CPD DASH 78 LBRACKET C RBRACKET
type: SpeciesReference

612170
reversible: true
type: Reaction
reactant: 612194
product: 612230
reactant: 612182
notes: GENE_ASSOCIATION: ACIAD3383
product: 612218
name: fatty acyl-coa reductase (c18:1(c9))
fast: false
product: 612206

596647
stoichiometry: 1.0
species: M AMINO DASH HYDROXYMETHYL DASH METHYLPYRIMIDINE DASH PP LBRACKET C RBRACKET
type: SpeciesReference

617960
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M C6 COLON 0 DASH ACP LBRACKET C RBRACKET
constant: false
name: hexanoyl-acp
initial concentration: NaN
is: C05749
is: hexACP
in compartment: 570138
type: Species
has only substance units: false
initial amount: NaN
boundary condition: false

570306
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-dodec-3-enoyl-acp
type: Species

587973
stoichiometry: 1.0
species: 570414
type: SpeciesReference

605559
stoichiometry: 1.0
species: M CPD DASH 1301 LBRACKET C RBRACKET
type: SpeciesReference

589295
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

590825
stoichiometry: 1.0
species: M ASPARTYL DASH TRNAASN LBRACKET C RBRACKET
type: SpeciesReference

590077
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

R GLUC1PURIDYLTRANS DASH RXN
notes: GENE_ASSOCIATION: ACIAD0099
type: Reaction
name: utp--glucose-1-phosphate uridylyltransferase
is: GALUi
reactant: 588802
is: GLUC1PURIDYLTRANS-RXN
product: 588827
product: 588814
reversible: false
fast: false
reactant: 588790

M DGTP LBRACKET C RBRACKET
name: dgtp
is: C00286
has only substance units: false
initial amount: NaN
in compartment: 570138
initial concentration: NaN
is: dgtp
type: Species
constant: false
boundary condition: false
is: DGTP

596707
stoichiometry: 1.0
species: M L DASH GLUTAMATE DASH 5 DASH P LBRACKET C RBRACKET
type: SpeciesReference

M SUPER DASH OXIDE LBRACKET C RBRACKET
initial amount: NaN
boundary condition: false
name: o2-
is: o2s
is: C00704
has only substance units: false
type: Species
is: SUPER-OXIDE
in compartment: 570138
constant: false
initial concentration: NaN

581292
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

608121
stoichiometry: 1.0
species: M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET P RBRACKET
type: SpeciesReference

590138
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: SpeciesReference

583231
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

578296
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

576996
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

577551
reactant: 577563
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of ethylsalicylate
type: Reaction

M THF LBRACKET C RBRACKET
initial concentration: NaN
type: Species
is: C00101
boundary condition: false
name: thf
has only substance units: false
in compartment: 570138
initial amount: NaN
is: thf
is: THF
constant: false

587829
stoichiometry: 1.0
species: M KDO2 DASH LIPID DASH IVA LBRACKET C RBRACKET
type: SpeciesReference

584545
stoichiometry: 1.0
species: M FRUCTOSE DASH 16 DASH DIPHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

597946
stoichiometry: 1.0
species: M CIS DASH CIS DASH MUCONATE LBRACKET E RBRACKET
type: SpeciesReference

604162
stoichiometry: 1.0
species: 570643
type: SpeciesReference

M MET DASH TRNAS LBRACKET C RBRACKET
boundary condition: false
in compartment: 570138
is: trnamet
name: methionine trna
constant: false
type: Species
has only substance units: false
is: MET-TRNAS
is: C01647
initial concentration: NaN
initial amount: NaN

613049
type: Reaction
product: 613109
reactant: 613061
reversible: true
reactant: 613085
name: generic acyl acp of phospholipids assembly
fast: false
reactant: 613073
notes: GENE_ASSOCIATION:
reactant: 613097

615896
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

581002
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

M MALONATE LBRACKET C RBRACKET
initial concentration: NaN
boundary condition: false
type: Species
name: malonate
initial amount: NaN
is: MALONATE
has only substance units: false
is: C00383
in compartment: 570138
constant: false

612748
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

M DGMP LBRACKET C RBRACKET
has only substance units: false
constant: false
name: dgmp
in compartment: 570138
is: DGMP
type: Species
is: C00362
boundary condition: false
is: dgmp
initial amount: NaN
initial concentration: NaN

587985
stoichiometry: 1.0
species: M KDO2 DASH LIPID DASH A LBRACKET C RBRACKET
type: SpeciesReference

612496
stoichiometry: 1.0
species: M C4 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: SpeciesReference

R PRTRANS DASH RXN
type: Reaction
product: 599322
reactant: 599310
is: PRTRANS-RXN
product: 599334
fast: false
reactant: 599298
reversible: true
name: anthranilate phosphoribosyltransferase
is: ANPRT
notes: GENE_ASSOCIATION: ACIAD2462

581930
stoichiometry: 2.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

614852
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

M MANNOSE DASH 6P LBRACKET C RBRACKET
constant: false
has only substance units: false
in compartment: 570138
is: MANNOSE-6P
name: mannose-6-phosphate
type: Species
initial concentration: NaN
initial amount: NaN
boundary condition: false
is: C00275
is: man6p

600584
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

584353
stoichiometry: 1.0
species: M PYRIDOXINE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

613121
reactant: 613158
notes: GENE_ASSOCIATION:
reversible: true
reactant: 613170
product: 613194
name: generic fatty acid of triacylglycerol assembly
reactant: 613145
reactant: 613133
fast: false
reactant: 613182
type: Reaction

598176
stoichiometry: 1.0
species: M CPD DASH 3571 LBRACKET E RBRACKET
type: SpeciesReference

M P3I LBRACKET C RBRACKET
name: pppi
is: C03279
constant: false
initial amount: NaN
has only substance units: false
type: Species
is: P3I
in compartment: 570138
is: pppi
boundary condition: false
initial concentration: NaN

598103
stoichiometry: 1.0
species: M 3 DASH DEOXY DASH D DASH ARABINO DASH HEPTULOSONATE DASH 7 DASH P LBRACKET C RBRACKET
type: SpeciesReference

M DADP LBRACKET C RBRACKET
initial concentration: NaN
boundary condition: false
type: Species
name: dadp
constant: false
is: DADP
initial amount: NaN
in compartment: 570138
has only substance units: false
is: C00206
is: dadp

613194
stoichiometry: 1.0
species: 570487
type: SpeciesReference

M C18 COLON 1 LPAREN C9 RPAREN DASH COA LBRACKET C RBRACKET
is: OLEOYL-COA
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-octadec-9-enoyl-coa
type: Species

587252
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

592934
stoichiometry: 1.0
species: M GUANOSINE LBRACKET C RBRACKET
type: SpeciesReference

610726
stoichiometry: 1.0
species: M C14 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

591139
stoichiometry: 1.0
species: 570883
type: SpeciesReference

611472
stoichiometry: 1.0
species: M CPDIM DASH 6116 LBRACKET C RBRACKET
type: SpeciesReference

M DIMETHYL DASH D DASH RIBITYL DASH LUMAZINE LBRACKET C RBRACKET
is: dmlz
is: C04332
in compartment: 570138
initial concentration: NaN
name: 6,7-dimethyl-8-(1-d-ribityl)lumazine
is: DIMETHYL-D-RIBITYL-LUMAZINE
type: Species
has only substance units: false
boundary condition: false
initial amount: NaN
constant: false

577020
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

600644
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

602370
stoichiometry: 1.0
species: M SO3 LBRACKET C RBRACKET
type: SpeciesReference

607302
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

587769
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M AMINO DASH RIBOSYLAMINO DASH 1H DASH 3H DASH PYR DASH DIONE DASH P LBRACKET C RBRACKET
name: 5-amino-6-(ribosylamino)-2,4-(1h,3h)-pyrimidinedione 5'-phosphate
initial concentration: NaN
is: AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE-P
has only substance units: false
type: Species
boundary condition: false
constant: false
initial amount: NaN
is: 5apru
is: C01268
in compartment: 570138

586458
stoichiometry: 1.0
species: M INOSINE LBRACKET E RBRACKET
type: SpeciesReference

M FERULOATE LBRACKET C RBRACKET
boundary condition: false
type: Species
initial amount: NaN
in compartment: 570138
is: C01494
has only substance units: false
is: FERULOATE
constant: false
name: ferulate
initial concentration: NaN

609364
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

614587
stoichiometry: 1.0
species: M C16 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

610016
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

590284
stoichiometry: 1.0
species: M FE PLUS 2 LBRACKET C RBRACKET
type: SpeciesReference

589331
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET
type: SpeciesReference

595261
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

582714
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

606450
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

594019
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: SpeciesReference

592668
stoichiometry: 0.67
species: M UDP LBRACKET C RBRACKET
type: SpeciesReference

576285
stoichiometry: 1.0
species: M CARBAMOYL DASH P LBRACKET C RBRACKET
type: SpeciesReference

609607
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

577238
stoichiometry: 1.0
species: M XYLULOSE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

R DUDPKIN DASH RXN
fast: false
reversible: true
product: 618116
is: DUDPKIN-RXN
name: dudp kinase
is: NDPK6
type: Reaction
reactant: 618092
product: 618104
reactant: 618080
notes: GENE_ASSOCIATION: ACIAD0556

585460
stoichiometry: 2.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

580066
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

572711
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH DEOXYADENOSINE
reactant: 579729
is: DADNt2pp
product: 579753
name: transport of deoxyadenosine [extraorganism;cytosol](secondary symport)
product: 579741
notes: GENE_ASSOCIATION: ACIAD2389
is: TRANS-RXN-108C
reversible: false
reactant: 579717
fast: false
type: Reaction

578332
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

574986
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

R ARGSUCCINSYN DASH RXN
type: Reaction
reactant: 574542
reactant: 574530
fast: false
name: argininosuccinate synthase
reversible: true
product: 574578
notes: GENE_ASSOCIATION: ACIAD1151
product: 574554
product: 574566
is: ARGSS
is: ARGSUCCINSYN-RXN
reactant: 574517

605390
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 6501 LBRACKET C RBRACKET
initial amount: NaN
initial concentration: NaN
name: benzylacetate
is: CPD-6501
type: Species
is: C15513
boundary condition: false
constant: false
in compartment: 570138
has only substance units: false

601477
stoichiometry: 1.0
species: M C6 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: SpeciesReference

M 4 DASH HYDROXY DASH ETCETERA DASH HYDROXYPROPIONYL DASH COA LBRACKET C RBRACKET
in compartment: 570138
has only substance units: false
is: 4-HYDROXY-ETCETERA-HYDROXYPROPIONYL-COA
constant: false
initial concentration: NaN
is: C07303
boundary condition: false
initial amount: NaN
type: Species
name: 4-hydroxy-3-methoxyphenyl-beta-hydroxypropionyl-coa

R 2TRANSKETO DASH RXN
name: transketolase (erythrose-4p)
reactant: 578104
is: TKT2
notes: GENE_ASSOCIATION: ACIAD2035
reactant: 578116
product: 578128
type: Reaction
reversible: true
is: 2TRANSKETO-RXN
product: 578140
fast: false

582002
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

611230
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

596863
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R RIBOFLAVIN DASH SYN DASH RXN
notes: GENE_ASSOCIATION: ACIAD0249
name: riboflavin synthase
type: Reaction
is: RIBOFLAVIN-SYN-RXN
reactant: 590909
product: 590933
product: 590921
is: RBFSb
fast: false
reversible: true

573975
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

R DAPASYN DASH RXN
fast: false
reactant: 587061
product: 587085
reactant: 587048
notes: GENE_ASSOCIATION: ACIAD0856
is: DAPASYN-RXN
product: 587073
is: AMAOTr
type: Reaction
reversible: true
name: adenosylmethionine--8-amino-7-oxononanoate aminotransferase

616150
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

582954
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

581761
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

614161
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R 3PGAREARR DASH RXN
product: 579055
reactant: 579042
notes: GENE_ASSOCIATION: ACIAD0256
is: 3PGAREARR-RXN
is: PGM
fast: false
reversible: true
name: phosphoglycerate mutase
type: Reaction

616210
stoichiometry: 1.0
species: M TMP LBRACKET C RBRACKET
type: SpeciesReference

M CIT LBRACKET E RBRACKET
constant: false
is: CIT
type: Species
is: cit
has only substance units: false
in compartment: 570126
name: citrate
initial concentration: NaN
boundary condition: false
is: C00158
initial amount: NaN

M ARG LBRACKET E RBRACKET
has only substance units: false
initial concentration: NaN
initial amount: NaN
constant: false
is: ARG
is: C00062
type: Species
is: arg-L
name: l-arginine
in compartment: 570126
boundary condition: false

601150
stoichiometry: 1.0
species: M DIHYDRONEOPTERIN DASH P LBRACKET C RBRACKET
type: SpeciesReference

R QUINOLINATE DASH SYNTHA DASH RXN
product: 596863
is: QULNS
reactant: 596815
reversible: false
product: 596839
fast: false
name: quinolinate synthetase a
reactant: 596827
type: Reaction
is: QUINOLINATE-SYNTHA-RXN
notes: GENE_ASSOCIATION: ACIAD0651
product: 596851

R C12 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
name: enoyl-coa hydratase (c12:0)
reactant: 593572
type: Reaction
is: ENOYL-COA-HYDRAT-RXN
is: ECOAH5
product: 593584
fast: false
reversible: false
reactant: 593560

R DCTP DASH PYROPHOSPHATASE DASH RXN
fast: false
type: Reaction
product: 595382
reversible: false
notes: GENE_ASSOCIATION: ACIAD3065
reactant: 595346
name: dctp pyrophosphatase
product: 595370
is: DCTP-PYROPHOSPHATASE-RXN
is: NTPP3
reactant: 595358

595321
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH C6 COLON 0
fast: false
reactant: 572747
name: transport of hexanoate [extraorganism;cytosol](secondary symport)
product: 572771
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
type: Reaction
reactant: 572759
product: 572783
is: TRANS-RXNIM-5726
reversible: true

588622
stoichiometry: 1.0
species: M 3 DASH OCTAPRENYL DASH 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET
type: SpeciesReference

602094
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

590320
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: SpeciesReference

R SULFATE DASH ADENYLYLTRANS DASH RXN
reactant: 589752
name: sulfate adenylyltransferase
product: 589788
product: 589776
reversible: true
fast: false
notes: GENE_ASSOCIATION: ACIAD1073 and ACIAD1072
reactant: 589764
type: Reaction
is: SULFATE-ADENYLYLTRANS-RXN

600500
stoichiometry: 1.0
species: M GLC DASH 6 DASH P LBRACKET C RBRACKET
type: SpeciesReference

575310
stoichiometry: 1.0
species: M CPD DASH 761 LBRACKET C RBRACKET
type: SpeciesReference

R C18 COLON 1 LPAREN C9 RPAREN DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
product: 596165
product: 596153
reactant: 596141
notes: GENE_ASSOCIATION: ACIAD1381
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
fast: false
reversible: false
name: 3hydroxyacyl-acp dehydratase (c18:1(c9))
type: Reaction

598091
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

605451
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

600464
stoichiometry: 1.0
species: 570330
type: SpeciesReference

R ACETYLHOMOSER DASH CYS DASH RXN
is: AHSERL2
name: o-acetylhomoserine sulfhydrolase
is: ACETYLHOMOSER-CYS-RXN
type: Reaction
product: 590572
reactant: 590548
product: 590560
fast: false
reactant: 590536
reversible: false
notes: GENE_ASSOCIATION: ACIAD3382 or ACIAD2314

591512
product: 591536
reactant: 591524
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of 2-aminobenzoate [extraorganism;cytosol](passive)
type: Reaction

608761
stoichiometry: 0.02
species: M TYR DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

587360
stoichiometry: 1.0
species: 570258
type: SpeciesReference

R ASPARTASE DASH RXN
fast: false
name: aspartate ammonia-lyase
is: ASPARTASE-RXN
reversible: false
notes: GENE_ASSOCIATION: ACIAD1744
product: 604692
product: 604704
is: ASPT
reactant: 604680
type: Reaction

594491
stoichiometry: 1.0
species: M AMMONIUM LBRACKET E RBRACKET
type: SpeciesReference

585953
stoichiometry: 2.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

611809
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH NMN
product: 585448
reactant: 585436
notes: GENE_ASSOCIATION: ACIAD1033
is: TRANS-RXN-9
is: NMNPtpp
fast: false
reversible: false
name: transport of nicotinamide nucleotide [extraorganism;cytosol](passive)
type: Reaction

572375
stoichiometry: 2.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

M PANTOTHENATE LBRACKET C RBRACKET
has only substance units: false
initial concentration: NaN
is: C00864
boundary condition: false
type: Species
name: pantothenate
in compartment: 570138
is: PANTOTHENATE
is: pnto-R
constant: false
initial amount: NaN

M LYS LBRACKET E RBRACKET
is: C00047
type: Species
boundary condition: false
in compartment: 570126
initial amount: NaN
has only substance units: false
constant: false
is: LYS
initial concentration: NaN
is: lys-L
name: l-lysine

601852
stoichiometry: 1.0
species: M CIT LBRACKET E RBRACKET
type: SpeciesReference

618356
stoichiometry: 1.0
species: M OX DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
type: SpeciesReference

616791
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

M C10 COLON 0 DASH ACP LBRACKET C RBRACKET
initial concentration: NaN
has only substance units: false
constant: false
is: dcaACP
name: decanoyl-acp
is: C05755
boundary condition: false
initial amount: NaN
type: Species
in compartment: 570138

595068
stoichiometry: 1.0
species: M C5 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

589127
stoichiometry: 1.0
species: M C6 LBRACKET C RBRACKET
type: SpeciesReference

618466
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

595478
stoichiometry: 1.0
species: M IMP LBRACKET C RBRACKET
type: SpeciesReference

602527
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

599670
stoichiometry: 1.0
species: M PROPIONYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH 27 DASH BIS
reactant: 608121
product: 608145
name: transport of 3-dehydro-shikimate [periplasm;cytosol](secondary symport)
type: Reaction
reactant: 608133
reversible: false
is: TRANS-RXN-27
fast: false
product: 608157
notes: GENE_ASSOCIATION: ACIAD0223

574156
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

617742
stoichiometry: 1.0
species: M CPDIM DASH 6115 LBRACKET E RBRACKET
type: SpeciesReference

608979
stoichiometry: 1.0
species: M DADP LBRACKET C RBRACKET
type: SpeciesReference

585400
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

600921
product: 600945
reactant: 600933
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of 2,3-butanediol [extraorganism;cytosol](passive)
type: Reaction

595744
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

591922
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

571558
stoichiometry: 1.0
species: M 2 DASH KETO DASH ISOVALERATE LBRACKET C RBRACKET
type: SpeciesReference

586880
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

606281
stoichiometry: 1.0
species: M DTDP DASH DEOH DASH DEOXY DASH MANNOSE LBRACKET C RBRACKET
type: SpeciesReference

580798
stoichiometry: 1.0
species: M 3 DASH OHLAUROYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

609485
stoichiometry: 1.0
species: M FRUCTOSE DASH 16 DASH DIPHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

603537
stoichiometry: 1.0
species: M MESO DASH DIAMINOPIMELATE LBRACKET C RBRACKET
type: SpeciesReference

584761
stoichiometry: 0.202
species: M DCTP LBRACKET C RBRACKET
type: SpeciesReference

578814
stoichiometry: 1.0
species: M METHYLENE DASH THF LBRACKET C RBRACKET
type: SpeciesReference

599898
stoichiometry: 1.0
species: M DUMP LBRACKET C RBRACKET
type: SpeciesReference

591403
stoichiometry: 0.445
species: M C18 COLON 1 LPAREN C9 RPAREN DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M DEOXYGUANOSINE LBRACKET E RBRACKET
constant: false
boundary condition: false
is: DEOXYGUANOSINE
type: Species
initial amount: NaN
has only substance units: false
is: dgsn
name: deoxyguanosine
initial concentration: NaN
in compartment: 570126
is: C00330

580858
stoichiometry: 1.0
species: M C6 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

583015
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

577069
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

582098
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

589632
stoichiometry: 1.0
species: M GLC DASH 6 DASH P LBRACKET C RBRACKET
type: SpeciesReference

598803
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

577346
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R UPPSYN DASH RXN
is: UPPSYN-RXN
reactant: 602455
reversible: false
fast: false
is: UDCPDPS
notes: GENE_ASSOCIATION: ACIAD1374
product: 602479
product: 602491
type: Reaction
name: undecaprenyl pyrophosphate synthetase
reactant: 602467

616438
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

576839
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

591849
stoichiometry: 1.0
species: M IMP LBRACKET C RBRACKET
type: SpeciesReference

593138
stoichiometry: 1.0
species: M B DASH ALANINE LBRACKET C RBRACKET
type: SpeciesReference

608470
stoichiometry: 0.04
species: M CHARGED DASH SER DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

607002
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

573387
stoichiometry: 1.0
species: M THR LBRACKET C RBRACKET
type: SpeciesReference

M ERYTHRONATE DASH 4P LBRACKET C RBRACKET
is: ERYTHRONATE-4P
initial concentration: NaN
in compartment: 570138
name: erythronate-4-phosphate
has only substance units: false
constant: false
is: C03393
type: Species
boundary condition: false
initial amount: NaN
is: 4per

M C10 COLON 0 DASH COA LBRACKET C RBRACKET
is: dcacoa
has only substance units: false
initial concentration: NaN
boundary condition: false
initial amount: NaN
type: Species
in compartment: 570138
is: C05274
constant: false
name: decanoyl-coa

576201
stoichiometry: 1.0
species: M HCO3 LBRACKET C RBRACKET
type: SpeciesReference

576394
stoichiometry: 1.0
species: M ETOH LBRACKET C RBRACKET
type: SpeciesReference

574216
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

590970
stoichiometry: 1.0
species: M UNDECAPRENYL DASH DIPHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

583688
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 654 LBRACKET C RBRACKET
constant: false
initial concentration: NaN
in compartment: 570138
name: 2,5-dioxopentanoate
is: C00433
type: Species
has only substance units: false
initial amount: NaN
is: CPD-654
boundary condition: false

588742
stoichiometry: 1.0
species: M AICAR LBRACKET C RBRACKET
type: SpeciesReference

596923
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

605066
stoichiometry: 1.0
species: M ILE DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

601065
stoichiometry: 1.0
species: M 3 DASH KETOBUTYRATE LBRACKET C RBRACKET
type: SpeciesReference

598429
stoichiometry: 1.0
species: M XANTHOSINE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

575757
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

601598
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R C16 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
fast: false
type: Reaction
is: ENOYL-COA-HYDRAT-RXN
name: enoyl-coa hydratase (c16:0)
reactant: 587469
reversible: false
is: ECOAH7
reactant: 587481
product: 587493

589067
stoichiometry: 1.0
species: M CAFFEATE LBRACKET P RBRACKET
type: SpeciesReference

614352
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

579933
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

581220
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

583843
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

604307
stoichiometry: 1.0
species: M UMP LBRACKET C RBRACKET
type: SpeciesReference

592186
stoichiometry: 1.0
species: M C12 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

571474
stoichiometry: 1.0
species: M FORMATE LBRACKET C RBRACKET
type: SpeciesReference

M WATER LBRACKET E RBRACKET
is: WATER
is: C00001
has only substance units: false
initial amount: NaN
boundary condition: false
is: h2o
constant: false
initial concentration: NaN
type: Species
name: h2o
in compartment: 570126

575949
stoichiometry: 1.0
species: M ACETOIN LBRACKET C RBRACKET
type: SpeciesReference

614051
reactant: 614063
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of ethane sulfonate
type: Reaction

580430
stoichiometry: 1.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET
type: SpeciesReference

618635
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH CPD DASH 335
product: 586771
reactant: 586759
notes: GENE_ASSOCIATION: ACIAD2510
is: TRANS-RXNIM-5925
fast: false
reversible: true
name: transport of (r)-3-hydroxybutanoate [extraorganism;cytosol](passive)
type: Reaction

593246
stoichiometry: 1.0
species: M THZ DASH P LBRACKET C RBRACKET
type: SpeciesReference

599922
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

576322
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

575721
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

575697
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

R NADH DASH DEHYDROG DASH A DASH RXN
reversible: false
reactant: 610304
name: nadh dehydrogenase (ubiquinone)
product: 610328
reactant: 610292
is: NADH-DEHYDROG-A-RXN
product: 610340
notes: GENE_ASSOCIATION: ACIAD0743 and ACIAD0742 and ACIAD0741 and ACIAD0740 and ACIAD0739 and ACIAD0738 and ACIAD0737 and ACIAD0736 and ACIAD0735 and ACIAD0734 and ACIAD0733 and ACIAD0731 and ACIAD0730
type: Reaction
fast: false
is: NADH6
product: 610352
reactant: 610316

588022
stoichiometry: 1.0
species: M ARABINOSE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

R C16 COLON 1 LPAREN C7 RPAREN DASH COA DASH THIOLASE DASH RXN
fast: false
type: Reaction
is: THIOESTER-RXN
reactant: 615068
product: 615092
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
reactant: 615080
name: acyl-coa thiolase (c16:1(c7))
product: 615104
reversible: false

R SUPEROX DASH DISMUT DASH RXN
reactant: 585472
fast: false
notes: GENE_ASSOCIATION: ACIAD1070 or ACIAD1346 or ACIAD2072
type: Reaction
is: SPODM
product: 585496
reversible: false
reactant: 585460
name: superoxide dismutase
is: SUPEROX-DISMUT-RXN
product: 585484

573411
stoichiometry: 1.0
species: M 2 DASH OXOBUTANOATE LBRACKET C RBRACKET
type: SpeciesReference

M THIAMINE DASH P LBRACKET C RBRACKET
is: C01081
type: Species
is: thmmp
has only substance units: false
in compartment: 570138
boundary condition: false
initial amount: NaN
name: thiamine-phosphate
is: THIAMINE-P
initial concentration: NaN
constant: false

581074
stoichiometry: 1.0
species: M OH DASH MYRISTOYL LBRACKET C RBRACKET
type: SpeciesReference

586735
stoichiometry: 1.0
species: M GLUTARYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

606822
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

607386
reactant: 607495
reactant: 607531
reversible: false
reactant: 607398
type: Reaction
notes: GENE_ASSOCIATION:
reactant: 607446
reactant: 607519
reactant: 607507
reactant: 607434
reactant: 607422
reactant: 607544
reactant: 607410
name: cofactor assembly
reactant: 607482
fast: false
reactant: 607458
reactant: 607470
product: 607556

611509
stoichiometry: 1.0
species: M CPDIM DASH 6118 LBRACKET C RBRACKET
type: SpeciesReference

579368
stoichiometry: 1.0
species: M 2 COMMA 3 DASH DIHYDRODIPICOLINATE LBRACKET C RBRACKET
type: SpeciesReference

M GLUTARYL DASH COA LBRACKET C RBRACKET
is: C00527
in compartment: 570138
boundary condition: false
is: GLUTARYL-COA
initial amount: NaN
constant: false
name: glutaryl-coa
type: Species
has only substance units: false
initial concentration: NaN
is: glutcoa

592114
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

572783
stoichiometry: 1.0
species: M C6 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

592006
stoichiometry: 1.0
species: M GLYCOLLATE LBRACKET C RBRACKET
type: SpeciesReference

608543
stoichiometry: 0.02
species: M CHARGED DASH CYS DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

607158
reactant: 607170
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of dodecanoate
type: Reaction

593692
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

586398
stoichiometry: 1.0
species: M N DASH ACETYL DASH GLUTAMYL DASH P LBRACKET C RBRACKET
type: SpeciesReference

617899
stoichiometry: 1.0
species: 570763
type: SpeciesReference

598911
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

575541
stoichiometry: 1.0
species: M METHYL DASH GLYOXAL LBRACKET C RBRACKET
type: SpeciesReference

M C5 LBRACKET C RBRACKET
is: C05897
name: n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminoheptane- d-alanyl-d-alanine-diphosphoundecaprenol
type: Species
is: C5
boundary condition: false
has only substance units: false
initial amount: NaN
is: uagmda
constant: false
initial concentration: NaN
in compartment: 570138

R GLUTATHIONE DASH SYN DASH RXN
reversible: false
reactant: 597308
name: glutathione synthase
product: 597356
notes: GENE_ASSOCIATION: ACIAD3518
product: 597344
type: Reaction
product: 597368
is: GTHS
is: GLUTATHIONE-SYN-RXN
reactant: 597332
fast: false
reactant: 597320

580638
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

571328
reactant: 571340
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 2-oxoglutarate
type: Reaction

580702
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

599814
stoichiometry: 1.0
species: M C12 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

593813
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

578706
stoichiometry: 1.0
species: M CAFFEATE LBRACKET E RBRACKET
type: SpeciesReference

R DIHYDROOROTOX DASH RXN
product: 596093
reactant: 596081
product: 596105
reversible: false
is: DHORD
fast: false
notes: GENE_ASSOCIATION: ACIAD1321
type: Reaction
reactant: 596069
name: dihydroorotate oxidase
is: DIHYDROOROTOX-RXN

609595
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

592078
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

595634
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

M CHOLINE LBRACKET E RBRACKET
is: C00114
has only substance units: false
initial amount: NaN
is: CHOLINE
boundary condition: false
is: chol
type: Species
in compartment: 570126
initial concentration: NaN
name: choline
constant: false

608821
stoichiometry: 4.2
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

570162
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 9-carboxynonanoyl-coa
type: Species

603826
stoichiometry: 1.0
species: M D DASH GLT LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 592 LBRACKET E RBRACKET
in compartment: 570126
has only substance units: false
is: CPD-592
name: 4-guanidinobutanoate
type: Species
initial amount: NaN
boundary condition: false
is: C01035
initial concentration: NaN
is: 4gudbutn
constant: false

R RXN0 DASH 277
name: 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1999
reactant: 573771
reactant: 573759
is: RXN0-277
product: 573795
product: 573783
fast: false
reversible: false

599562
stoichiometry: 1.0
species: M CYTOSINE LBRACKET C RBRACKET
type: SpeciesReference

588959
stoichiometry: 1.0
species: M 4 DASH HYDROXY DASH BENZYL DASH ALCOHOL LBRACKET E RBRACKET
type: SpeciesReference

602635
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

577455
stoichiometry: 1.0
species: M C18 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

577178
stoichiometry: 1.0
species: M BENZYL DASH ALCOHOL LBRACKET C RBRACKET
type: SpeciesReference

578609
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

596033
stoichiometry: 1.0
species: M C14 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: SpeciesReference

601960
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

600860
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

M THIAMINE DASH PYROPHOSPHATE LBRACKET C RBRACKET
in compartment: 570138
is: C00068
initial concentration: NaN
is: THIAMINE-PYROPHOSPHATE
type: Species
has only substance units: false
name: thiamine-pyrophosphate
constant: false
initial amount: NaN
is: thmpp
boundary condition: false

607230
product: 607254
reactant: 607242
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of ethylsalicylate [extraorganism;cytosol](passive)
type: Reaction

607098
stoichiometry: 1.0
species: M CPDIM DASH 6115 LBRACKET E RBRACKET
type: SpeciesReference

M BISOHMYR DASH GLC LBRACKET C RBRACKET
in compartment: 570138
has only substance units: false
name: lipid a disaccharide
is: lipidAds
is: C04932
constant: false
is: BISOHMYR-GLC
boundary condition: false
initial amount: NaN
type: Species
initial concentration: NaN

618526
stoichiometry: 1.0
species: 571016
type: SpeciesReference

573495
stoichiometry: 1.0
species: M CAFFEOYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

593971
stoichiometry: 1.0
species: M IMP LBRACKET C RBRACKET
type: SpeciesReference

593355
stoichiometry: 1.0
species: M CPD DASH 205 LBRACKET E RBRACKET
type: SpeciesReference

609027
stoichiometry: 4.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

M MESO DASH DIAMINOPIMELATE LBRACKET C RBRACKET
boundary condition: false
has only substance units: false
is: MESO-DIAMINOPIMELATE
in compartment: 570138
is: C00680
initial concentration: NaN
name: meso-diaminopimelate
constant: false
initial amount: NaN
type: Species
is: 26dap-M

578405
stoichiometry: 1.0
species: M CYTIDINE LBRACKET C RBRACKET
type: SpeciesReference

574878
stoichiometry: 1.0
species: M FORMATE LBRACKET C RBRACKET
type: SpeciesReference

M PROTON LBRACKET P RBRACKET
in compartment: 570114
is: http://bigg.ucsd.edu/#h
is: C00080
type: Species
initial amount: NaN
constant: false
name: h+
has only substance units: false
is: PROTON
initial concentration: NaN
boundary condition: false

604416
stoichiometry: 1.0
species: M LEU DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

616718
stoichiometry: 1.0
species: M PRO LBRACKET C RBRACKET
type: SpeciesReference

590693
reactant: 590705
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of vanillate
type: Reaction

592717
stoichiometry: 2.0
species: M 5 DASH AMINO DASH LEVULINATE LBRACKET C RBRACKET
type: SpeciesReference

600716
stoichiometry: 1.0
species: M CPDIM DASH 6098 LBRACKET C RBRACKET
type: SpeciesReference

595116
stoichiometry: 2.0
species: M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET
type: SpeciesReference

617091
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

578140
stoichiometry: 1.0
species: M FRUCTOSE DASH 6P LBRACKET C RBRACKET
type: SpeciesReference

588851
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

576430
stoichiometry: 1.0
species: M DTDP DASH D DASH GLUCOSE LBRACKET C RBRACKET
type: SpeciesReference

578080
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

581183
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

590765
stoichiometry: 1.0
species: M KDO LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 110 LBRACKET E RBRACKET
boundary condition: false
is: C00805
constant: false
has only substance units: false
initial concentration: NaN
in compartment: 570126
is: CPD-110
initial amount: NaN
name: salicylate
type: Species

615320
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

579259
stoichiometry: 0.149
species: M CARDIOLIPIN LBRACKET C RBRACKET
type: SpeciesReference

593765
reactant: 593777
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of pentanoate
type: Reaction

R C12 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
is: HACD5i
reactant: 591560
reversible: false
fast: false
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
product: 591584
reactant: 591548
name: 3oxoacyl-coa thiolase (c10:0)
product: 591572
type: Reaction
is: OHACYL-COA-DEHYDROG-RXN

572026
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

618839
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

606077
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

603104
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R RXNIM DASH 6188
fast: false
type: Reaction
reactant: 601731
reversible: true
name: protocatechualdehyde dehydrogenase
reactant: 601743
product: 601767
notes: GENE_ASSOCIATION: ACIAD1725
product: 601755
is: RXNIM-6188
reactant: 601718

R PMPOXI DASH RXN
product: 584977
reactant: 584953
reactant: 584941
name: pyridoxamine-phosphate oxidase
is: PYAM5PO
type: Reaction
reversible: false
product: 584989
reactant: 584929
product: 584965
fast: false
notes: GENE_ASSOCIATION: ACIAD3501
is: PMPOXI-RXN

589403
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

604560
stoichiometry: 1.0
species: M C6 COLON 2 LPAREN C2 COMMA C4 RPAREN LBRACKET C RBRACKET
type: SpeciesReference

617236
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

597055
stoichiometry: 1.0
species: 571004
type: SpeciesReference

583303
stoichiometry: 1.0
species: M CARBAMYUL DASH L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

584473
product: 584509
product: 584497
reactant: 584485
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: generic free polysaccharides synthesis
type: Reaction

R OPPSYN DASH RXN
reversible: false
name: octaprenyl pyrophosphate synthase
product: 610642
is: OPPSYN-RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2940
product: 610630
reactant: 610605
fast: false
reactant: 610618
is: OCTDPS

605174
stoichiometry: 1.0
species: M DIMETHYL DASH D DASH RIBITYL DASH LUMAZINE LBRACKET C RBRACKET
type: SpeciesReference

579030
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

613482
stoichiometry: 1.0
species: M ANTHRANILATE LBRACKET E RBRACKET
type: SpeciesReference

M 1 DASH KETO DASH 2 DASH METHYLVALERATE LBRACKET C RBRACKET
in compartment: 570138
constant: false
boundary condition: false
type: Species
is: 1-KETO-2-METHYLVALERATE
initial concentration: NaN
initial amount: NaN
has only substance units: false
is: C06007
is: 23dhmp
name: 2,3-dihydroxy-3-methylvalerate

609255
stoichiometry: 1.0
species: M DGMP LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH 242A DASH BIS
product: 605282
notes: GENE_ASSOCIATION: ACIAD0173
is: TRANS-RXN-242A
reactant: 605270
type: Reaction
reversible: false
fast: false
reactant: 605258
product: 605294
name: transport of homoserine lactone [cytosol;extraorganism](secondary antiport)

609920
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

599250
stoichiometry: 1.0
species: M C16 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M ASP DASH TRNAS LBRACKET C RBRACKET
is: trnaasp
has only substance units: false
constant: false
is: ASP-TRNAS
type: Species
is: C01638
in compartment: 570138
initial concentration: NaN
boundary condition: false
initial amount: NaN
name: aspartate trna

M GLY LBRACKET E RBRACKET
is: gly
is: GLY
initial concentration: NaN
in compartment: 570126
has only substance units: false
constant: false
type: Species
is: C00037
name: glycine
initial amount: NaN
boundary condition: false

M TOLUENE LBRACKET C RBRACKET
initial concentration: NaN
has only substance units: false
boundary condition: false
name: toluene
is: C01455
in compartment: 570138
initial amount: NaN
is: TOLUENE
constant: false
type: Species

596165
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

601366
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

589487
stoichiometry: 1.0
species: M L DASH LACTATE LBRACKET C RBRACKET
type: SpeciesReference

577924
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

R C14 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
type: Reaction
is: ENOYL-COA-HYDRAT-RXN
fast: false
product: 596057
reversible: false
is: ECOAH6
reactant: 596045
reactant: 596033
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
name: enoyl-coa hydratase (c14:0)

611581
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

R PGPPHOSPHA DASH RXN
reactant: 607976
product: 608013
name: phosphatidylglycerophosphatase
is: PGPPHOSPHA-RXN
type: Reaction
reactant: 607988
reversible: false
notes: GENE_ASSOCIATION: ACIAD3574 or ACIAD2942 or ACIAD0554
fast: false
product: 608000

M L DASH 1 DASH PHOSPHATIDYL DASH SERINE LBRACKET C RBRACKET
boundary condition: false
has only substance units: false
is: L-1-PHOSPHATIDYL-SERINE
name: generic l-1-phosphatidyl-serine
initial amount: NaN
initial concentration: NaN
constant: false
is: C02737
in compartment: 570138
type: Species

578489
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: SpeciesReference

571256
stoichiometry: 1.0
species: 570859
type: SpeciesReference

M DTDP DASH DEOH DASH DEOXY DASH GLUCOSE LBRACKET C RBRACKET
initial amount: NaN
boundary condition: false
is: dtdp4d6dg
constant: false
name: dtdp-4-dehydro-6-deoxy-d-glucose
has only substance units: false
is: DTDP-DEOH-DEOXY-GLUCOSE
initial concentration: NaN
is: C00687
in compartment: 570138
type: Species

581653
stoichiometry: 2.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

594840
stoichiometry: 1.0
species: M THREO DASH D LPAREN S RPAREN DASH ISO DASH CITRATE LBRACKET C RBRACKET
type: SpeciesReference

602443
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH 132
name: transport of uracil [extraorganism;cytosol](secondary symport)
is: URAt2pp
reactant: 587397
notes: GENE_ASSOCIATION: ACIAD3628 or ACIAD0031 or ACIAD0136 or ACIAD0702 or ACIAD0762 or ACIAD1243
product: 587421
type: Reaction
product: 587408
is: TRANS-RXN-132
fast: false
reversible: false
reactant: 587385

R SHIKIMATE DASH PQQ DASH RXN
fast: false
type: Reaction
reactant: 577719
reversible: true
product: 577743
notes: GENE_ASSOCIATION: ACIAD1716
reactant: 577707
product: 577731
name: shikimate dehydrogenase, pqq
is: SHIKIMATE-PQQ-RXN

608349
stoichiometry: 0.05
species: M CHARGED DASH LYS DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

R PHEAMINOTRANS DASH RXN
product: 579873
fast: false
type: Reaction
name: phenylalanine aminotransferase
reactant: 579837
is: PHETA1
reversible: true
notes: GENE_ASSOCIATION: ACIAD2574 or ACIAD0597 or ACIAD0112 or ACIAD0664
product: 579861
reactant: 579849
is: PHEAMINOTRANS-RXN

M RIBOFLAVIN LBRACKET C RBRACKET
is: ribflv
has only substance units: false
is: RIBOFLAVIN
constant: false
initial amount: NaN
type: Species
boundary condition: false
in compartment: 570138
initial concentration: NaN
is: C00255
name: riboflavin

585351
stoichiometry: 1.0
species: M FORMATE LBRACKET E RBRACKET
type: SpeciesReference

575469
stoichiometry: 1.0
species: M N2 DASH SUCCINYLGLUTAMIC DASH SEMIALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 421 LBRACKET C RBRACKET
is: CPD-421
initial concentration: NaN
in compartment: 570138
type: Species
boundary condition: false
has only substance units: false
is: C03296
is: sucarg
initial amount: NaN
constant: false
name: n2-succinyl-l-arginine

R CARBPSYN DASH RXN
notes: GENE_ASSOCIATION: ACIAD2861 and ACIAD2860
name: carbamoyl-phosphate synthase (glutamine-hydrolysing)
product: 576261
reversible: false
type: Reaction
fast: false
product: 576273
product: 576298
reactant: 576249
reactant: 576237
reactant: 576201
product: 576285
is: CARBPSYN-RXN
is: CBFS
reactant: 576225
reactant: 576213

R CYT DASH UBIQUINOL DASH OXID DASH O DASH RXN
reversible: false
notes: GENE_ASSOCIATION: ACIAD2428 and ACIAD2427 and ACIAD2426 and ACIAD2425
reactant: 572363
product: 572387
name: cytochrome oxidase bo
product: 572399
reactant: 572351
is: CYTBO3
fast: false
reactant: 572375
product: 572411
type: Reaction
is: RXN0-5268

582605
stoichiometry: 1.0
species: M ARG LBRACKET C RBRACKET
type: SpeciesReference

M N DASH LPAREN 5 DASH PHOSPHORIBOSYL RPAREN DASH ANTHRANILATE LBRACKET C RBRACKET
is: C04302
type: Species
is: N-(5-PHOSPHORIBOSYL)-ANTHRANILATE
has only substance units: false
name: n-(5'-phosphoribosyl)-anthranilate
boundary condition: false
in compartment: 570138
initial concentration: NaN
initial amount: NaN
constant: false
is: pran

603609
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

574902
reactant: 574914
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of pimelate
type: Reaction

615956
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

586940
stoichiometry: 0.06
species: M C18 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

598007
stoichiometry: 1.0
species: M WATER LBRACKET E RBRACKET
type: SpeciesReference

591620
stoichiometry: 1.0
species: M GLUCONATE LBRACKET P RBRACKET
type: SpeciesReference

572267
stoichiometry: 1.0
species: M FMN LBRACKET C RBRACKET
type: SpeciesReference

592511
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M D DASH GALACTARATE LBRACKET E RBRACKET
initial concentration: NaN
boundary condition: false
is: galct-D
constant: false
is: C00879
is: D-GALACTARATE
name: d-galactarate
type: Species
has only substance units: false
in compartment: 570126
initial amount: NaN

M PHENYL DASH PYRUVATE LBRACKET C RBRACKET
initial concentration: NaN
initial amount: NaN
is: phpyr
in compartment: 570138
type: Species
is: C00166
has only substance units: false
name: phenylpyruvate
boundary condition: false
constant: false
is: PHENYL-PYRUVATE

586014
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

612242
product: 612266
reactant: 612254
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of salicylate [extraorganism;cytosol](passive)
type: Reaction

R ASPARTATE DASH SEMIALDEHYDE DASH DEHYDROGENASE DASH RXN
product: 615464
name: aspartate-semialdehyde dehydrogenase
product: 615476
reactant: 615440
is: ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN
is: ASAD
reversible: true
fast: false
product: 615488
type: Reaction
reactant: 615452
notes: GENE_ASSOCIATION: ACIAD0479

609715
stoichiometry: 1.0
species: M GLYCEROL DASH 3P LBRACKET C RBRACKET
type: SpeciesReference

610954
stoichiometry: 0.002
species: 570342
type: SpeciesReference

581701
stoichiometry: 1.0
species: M C10 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

576177
stoichiometry: 1.0
species: M BENZYL DASH ALCOHOL LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH C18 COLON 0
name: transport of octadenoate [extraorganism;cytosol](secondary symport)
reversible: true
product: 582906
type: Reaction
fast: false
reactant: 582870
product: 582894
reactant: 582882
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
is: TRANS-RXNIM-5726

R C16 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
product: 601114
product: 601102
reactant: 601077
fast: false
reactant: 601089
name: hydroxyacyl-coa dehydrogenase (c16:0)
is: OHACYL-COA-DEHYDROG-RXN
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
type: Reaction
is: HACD7i
reversible: false

590476
stoichiometry: 1.0
species: M CARBAMYUL DASH L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

610448
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

592450
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

610124
stoichiometry: 1.0
species: M CPD DASH 561 LBRACKET C RBRACKET
type: SpeciesReference

R UROPORIIIMETHYLTRANSA DASH RXN
product: 595116
is: UROPORIIIMETHYLTRANSA-RXN
name: uroporphyrinogen-iii c-methyltransferase
fast: false
reactant: 595104
notes: GENE_ASSOCIATION: ACIAD2934
reversible: false
is: UPP3MT
product: 595128
reactant: 595092
type: Reaction

M P DASH HYDROXY DASH PHENYLPYRUVATE LBRACKET C RBRACKET
is: C01179
type: Species
constant: false
initial concentration: NaN
is: P-HYDROXY-PHENYLPYRUVATE
boundary condition: false
has only substance units: false
name: p-hydroxyphenylpyruvate
in compartment: 570138
is: 34hpp
initial amount: NaN

591789
stoichiometry: 1.0
species: M PANTOTHENATE LBRACKET C RBRACKET
type: SpeciesReference

573867
stoichiometry: 1.0
species: M CPDIM DASH 6098 LBRACKET C RBRACKET
type: SpeciesReference

584905
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

586302
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

579404
stoichiometry: 1.0
species: M UDP DASH OHMYR DASH GLUCOSAMINE LBRACKET C RBRACKET
type: SpeciesReference

580177
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

571402
stoichiometry: 1.0
species: 570883
type: SpeciesReference

611122
stoichiometry: 1.0
species: M SHIKIMATE LBRACKET C RBRACKET
type: SpeciesReference

607952
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

605342
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

M CHARGED DASH TRP DASH TRNAS LBRACKET C RBRACKET
boundary condition: false
is: trptrna
constant: false
has only substance units: false
type: Species
initial concentration: NaN
name: charged tryptophan trna
is: CHARGED-TRP-TRNAS
in compartment: 570138
initial amount: NaN
is: C03512

582158
reactant: 582170
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of d-aspartate
type: Reaction

592306
stoichiometry: 1.0
species: M 5 DASH PHOSPHO DASH RIBOSYL DASH GLYCINEAMIDE LBRACKET C RBRACKET
type: SpeciesReference

586086
stoichiometry: 2.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

618248
reactant: 618260
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of deoxycytidine
type: Reaction

618574
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

600355
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

605282
stoichiometry: 1.0
species: M HOMOSERINE DASH LACTONE LBRACKET E RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH FORMATE
reactant: 604054
is: RXNIM-6216
reactant: 604042
product: 604078
name: transport of formate [extraorganism;cytosol](secondary symport)
product: 604066
fast: false
type: Reaction
reversible: true
is: FORt2pp
notes: GENE_ASSOCIATION: ACIAD2100

606209
stoichiometry: 2.0
species: M D DASH ALANINE LBRACKET C RBRACKET
type: SpeciesReference

587144
stoichiometry: 1.0
species: 571196
type: SpeciesReference

596345
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH CONIFERYL DASH ALDEHYDE
product: 583869
reversible: true
reactant: 583843
notes: GENE_ASSOCIATION: ACIAD1709
name: transport of coniferyl aldehyde [extraorganism;cytosol](secondary symport)
product: 583856
is: TRANS-RXNIM-5916
fast: false
reactant: 583830
type: Reaction

M LIPID DASH IV DASH A LBRACKET C RBRACKET
boundary condition: false
in compartment: 570138
type: Species
name: lipid iv(a)
has only substance units: false
is: LIPID-IV-A
constant: false
is: C04919
initial amount: NaN
is: lipidA
initial concentration: NaN

M CPD DASH 470 LBRACKET C RBRACKET
is: C03283
boundary condition: false
in compartment: 570138
is: CPD-470
name: l-2,4-diaminobutanoate
initial concentration: NaN
type: Species
constant: false
has only substance units: false
initial amount: NaN

608604
stoichiometry: 0.04
species: M GLT DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

598296
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R N DASH ACETYLTRANSFER DASH RXN
type: Reaction
product: 595273
name: amino-acid n-acetyltransferase
notes: GENE_ASSOCIATION: ACIAD0650 or ACIAD0039
product: 595285
is: ACGS
fast: false
reversible: true
reactant: 595248
is: N-ACETYLTRANSFER-RXN
reactant: 595261

M CARBAMOYL DASH P LBRACKET C RBRACKET
is: C00169
constant: false
has only substance units: false
type: Species
initial concentration: NaN
name: carbamoyl-phosphate
boundary condition: false
is: cbp
is: CARBAMOYL-P
in compartment: 570138
initial amount: NaN

617610
stoichiometry: 1.0
species: M VANILLATE LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXNIM DASH 5923
name: transport of tricarballylate [extraorganism;cytosol](secondary symport)
notes: GENE_ASSOCIATION: ACIAD1541
is: TRANS-RXNIM-5923
product: 598188
product: 598200
reversible: true
type: Reaction
reactant: 598176
reactant: 598164
fast: false

M COUMARYL DASH COA LBRACKET C RBRACKET
initial concentration: NaN
is: coucoa
is: COUMARYL-COA
has only substance units: false
name: coumaroyl-coa
is: C00223
boundary condition: false
in compartment: 570138
constant: false
initial amount: NaN
type: Species

R MALIC DASH NADP DASH RXN
name: malate dehydrogenase (oxaloacetate decarboxylating) (nadp+)
product: 589536
fast: false
notes: GENE_ASSOCIATION: ACIAD2287
product: 589548
product: 589524
type: Reaction
is: MALIC-NADP-RXN
is: ME2
reversible: false
reactant: 589512
reactant: 589500

M BENZYL DASH ALCOHOL LBRACKET E RBRACKET
is: C00556
initial amount: NaN
constant: false
boundary condition: false
type: Species
in compartment: 570126
has only substance units: false
name: benzyl alcohol
initial concentration: NaN
is: BENZYL-ALCOHOL

580590
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

615212
stoichiometry: 1.0
species: M PANTOTHENATE LBRACKET C RBRACKET
type: SpeciesReference

590548
stoichiometry: 1.0
species: M CPD DASH 667 LBRACKET C RBRACKET
type: SpeciesReference

R IGPSYN DASH RXN
product: 596803
notes: GENE_ASSOCIATION: ACIAD2463
name: indole-3-glycerol-phosphate synthase
type: Reaction
fast: false
is: IGPS
product: 596791
reversible: false
reactant: 596767
is: IGPSYN-RXN
product: 596779

570234
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ACYL-OH_WAX
type: Species

M 2 DASH C DASH METHYL DASH D DASH ERYTHRITOL DASH 4 DASH PHOSPHATE LBRACKET C RBRACKET
is: 2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE
is: 2me4p
name: 2-c-methyl-d-erythritol-4-phosphate
is: C11434
type: Species
initial concentration: NaN
boundary condition: false
has only substance units: false
initial amount: NaN
in compartment: 570138
constant: false

R PYRIMSYN3 DASH RXN
fast: false
name: phosphomethylpyrimidine kinase
product: 596635
notes: GENE_ASSOCIATION: ACIAD0875
product: 596647
is: PYRIMSYN3-RXN
reactant: 596611
type: Reaction
reversible: true
is: PMPK
reactant: 596623

R C16 COLON 1 LPAREN C7 RPAREN DASH COATRANSFERASE DASH RXN
fast: false
reversible: false
type: Reaction
reactant: 581159
reactant: 581183
is: ACYLCOASYN-RXN
product: 581220
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
product: 581195
reactant: 581171
name: acyl coa transferase (c16:1(c7))
product: 581207

594515
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M ACETYLSERINE LBRACKET C RBRACKET
is: ACETYLSERINE
in compartment: 570138
constant: false
initial concentration: NaN
initial amount: NaN
is: C00979
name: o-acetyl-l-serine
boundary condition: false
is: acser
has only substance units: false
type: Species

570715
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: ethane sulfonate
type: Species

571690
stoichiometry: 1.0
species: M 5 DASH KETO DASH 4 DASH DEOXY DASH D DASH GLUCARATE LBRACKET C RBRACKET
type: SpeciesReference

R TYRAMINOTRANS DASH RXN
type: Reaction
reactant: 584377
product: 584401
name: tyrosine aminotransferase
notes: GENE_ASSOCIATION: ACIAD0597 or ACIAD2574 or ACIAD0112
product: 584413
reversible: true
is: TYRTA
is: TYRAMINOTRANS-RXN
fast: false
reactant: 584389

618152
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET
type: SpeciesReference

616923
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R C14 COLON 1 LPAREN C5 RPAREN DASH COATRANSFERASE DASH RXN
is: ACYLCOASYN-RXN
reactant: 604186
reversible: false
reactant: 604162
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
type: Reaction
reactant: 604174
product: 604223
name: acyl coa transferase (c14:1(c5))
fast: false
product: 604198
product: 604211

590198
stoichiometry: 1.0
species: M GLYCERATE LBRACKET C RBRACKET
type: SpeciesReference

R ATP DASH PYROPHOSPHATASE DASH RXN
reversible: false
reactant: 580298
name: atp pyrophosphatase
product: 580322
is: NTPP6
notes: GENE_ASSOCIATION: ACIAD3065
fast: false
reactant: 580310
is: ATP-PYROPHOSPHATASE-RXN
type: Reaction
product: 580334

570968
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans,cis-octadec-2,9-enoyl-acp
type: Species

M TYR DASH TRNAS LBRACKET C RBRACKET
in compartment: 570138
is: C00787
boundary condition: false
name: tyrosine trna
has only substance units: false
is: TYR-TRNAS
constant: false
is: trnatyr
type: Species
initial concentration: NaN
initial amount: NaN

574770
stoichiometry: 1.0
species: M CIT LBRACKET E RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH 122
name: transport of l-glutamate [extraorganism;cytosol](secondary symport)
notes: GENE_ASSOCIATION: ACIAD0804
type: Reaction
product: 599886
is: TRANS-RXN-122
fast: false
is: GLUt4pp
product: 599874
reactant: 599850
reversible: false
reactant: 599862

599177
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

608000
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R ADPREDUCT DASH RXN
product: 614972
type: Reaction
product: 614984
is: RNDR1
is: ADPREDUCT-RXN
reactant: 614948
name: adp reductase
reactant: 614936
fast: false
notes: GENE_ASSOCIATION: ACIAD0724 and ACIAD0722
reversible: false
product: 614960

615416
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

609848
stoichiometry: 1.0
species: 570715
type: SpeciesReference

574095
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: SpeciesReference

M L DASH HISTIDINOL DASH P LBRACKET C RBRACKET
boundary condition: false
has only substance units: false
is: hisp
is: L-HISTIDINOL-P
is: C01100
in compartment: 570138
initial amount: NaN
initial concentration: NaN
type: Species
constant: false
name: l-histidinol-phosphate

R PROTOHEMEFERROCHELAT DASH RXN
notes: GENE_ASSOCIATION: ACIAD3255
is: PROTOHEMEFERROCHELAT-RXN
reactant: 582435
type: Reaction
product: 582459
fast: false
name: ferrochelatase
reversible: true
is: FCLT
product: 582447
reactant: 582423

R TRANS DASH RXN DASH C10 COLON 0
product: 584293
is: TRANS-RXNIM-5726
reactant: 584281
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
reversible: true
type: Reaction
product: 584305
name: transport of decanoate [extraorganism;cytosol](secondary symport)
fast: false
reactant: 584269

573073
stoichiometry: 1.0
species: M WATER LBRACKET P RBRACKET
type: SpeciesReference

603392
reactant: 603404
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of suberate
type: Reaction

604042
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

576623
stoichiometry: 1.0
species: M MALONATE LBRACKET C RBRACKET
type: SpeciesReference

598200
stoichiometry: 1.0
species: M CPD DASH 3571 LBRACKET C RBRACKET
type: SpeciesReference

M XANTHOSINE LBRACKET C RBRACKET
boundary condition: false
type: Species
constant: false
is: C01762
initial concentration: NaN
name: xanthosine
is: XANTHOSINE
initial amount: NaN
in compartment: 570138
is: xtsn
has only substance units: false

602864
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

605679
stoichiometry: 1.0
species: M PROPIONYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M L DASH BETA DASH ASPARTYL DASH P LBRACKET C RBRACKET
name: l-aspartyl-4-p
initial concentration: NaN
type: Species
is: L-BETA-ASPARTYL-P
initial amount: NaN
in compartment: 570138
has only substance units: false
is: C03082
constant: false
is: 4pasp
boundary condition: false

R TRANS DASH RXN DASH THYMIDINE
reactant: 599008
product: 599033
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2389
name: transport of thymidine [extraorganism;cytosol](secondary symport)
fast: false
is: THMDt2pp
reversible: false
reactant: 598996
product: 599021
is: TRANS-RXN-108H

M L DASH ORNITHINE LBRACKET C RBRACKET
constant: false
initial concentration: NaN
initial amount: NaN
is: orn
is: L-ORNITHINE
in compartment: 570138
has only substance units: false
is: C01602
boundary condition: false
type: Species
name: l-ornithine

M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET
boundary condition: false
has only substance units: false
is: C00027
name: h2o2
is: h2o2
is: HYDROGEN-PEROXIDE
constant: false
initial amount: NaN
type: Species
initial concentration: NaN
in compartment: 570138

613266
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

613919
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

M SULFATE LBRACKET E RBRACKET
is: C00059
in compartment: 570126
initial amount: NaN
name: so42-
is: SULFATE
initial concentration: NaN
constant: false
boundary condition: false
type: Species
is: so4
has only substance units: false

R TRANS DASH RXNIM DASH 5736
type: Reaction
fast: false
product: 599550
notes: GENE_ASSOCIATION: ACIAD2541
is: CSNt2pp
product: 599562
reactant: 599526
reactant: 599538
name: transport of cytosine [extraorganism;cytosol](secondary symport)
is: TRANS-RXNIM-5736
reversible: false

616863
reactant: 616875
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 4-aminobutyrate
type: Reaction

612375
stoichiometry: 1.0
species: M FMN LBRACKET C RBRACKET
type: SpeciesReference

590235
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

606606
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R ADENODEAMIN DASH RXN
type: Reaction
reversible: false
fast: false
product: 580090
reactant: 580066
is: ADENODEAMIN-RXN
reactant: 580054
product: 580078
is: ADA
notes: GENE_ASSOCIATION: ACIAD1245
name: adenosine deaminase

597272
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

584233
stoichiometry: 1.0
species: M CPD DASH 592 LBRACKET C RBRACKET
type: SpeciesReference

578682
stoichiometry: 1.0
species: M DIOH DASH ISOVALERATE LBRACKET C RBRACKET
type: SpeciesReference

R RXN0 DASH 280
product: 597440
is: RXN0-280
product: 597416
product: 597453
product: 597428
fast: false
reactant: 597380
reactant: 597404
type: Reaction
name: ethane sulfonate monooxygenase
notes: GENE_ASSOCIATION: ACIAD0036 or ACIAD1505 or ACIAD1518 or ACIAD1527 or ACIAD1535 or ACIAD3471
reactant: 597392
reversible: false

588598
stoichiometry: 1.0
species: M OCTAPRENYL DASH DIPHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

616570
stoichiometry: 1.0
species: M C14 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

597803
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

603056
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: SpeciesReference

606930
stoichiometry: 1.0
species: M GMP LBRACKET C RBRACKET
type: SpeciesReference

579476
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

598392
stoichiometry: 1.0
species: M XANTHINE LBRACKET C RBRACKET
type: SpeciesReference

M 2 DASH KETO DASH 3 DASH METHYL DASH VALERATE LBRACKET C RBRACKET
is: C00671
constant: false
initial concentration: NaN
is: 3mop
type: Species
in compartment: 570138
has only substance units: false
boundary condition: false
name: 2-keto-3-methyl-valerate
is: 2-KETO-3-METHYL-VALERATE
initial amount: NaN

M CPD DASH 78 LBRACKET C RBRACKET
is: CPD-78
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 4-diphosphocytidyl-2-c-methylerythritol 2-phosphate
type: Species

573266
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH CPD DASH 3623
type: Reaction
reactant: 604114
fast: false
reversible: true
product: 604150
is: TRANS-RXNIM-5922
reactant: 604126
product: 604138
notes: GENE_ASSOCIATION: ACIAD1694
name: transport of sebacate [extraorganism;cytosol](secondary symport)

617019
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

M ADP LBRACKET C RBRACKET
is: ADP
in compartment: 570138
initial concentration: NaN
boundary condition: false
is: adp
is: C00008
initial amount: NaN
constant: false
has only substance units: false
name: adp
type: Species

601755
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

615536
stoichiometry: 1.0
species: M KDO DASH LIPID DASH IVA LBRACKET C RBRACKET
type: SpeciesReference

R CO2 DASH DISS DASH RXN
reversible: true
product: 596695
reactant: 596671
is: HCO3E
reactant: 596659
product: 596683
fast: false
name: dissolution of carbon dioxide
notes: GENE_ASSOCIATION: SPONT SPONTANEOUS: TRUE
type: Reaction

597881
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

588514
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

599658
stoichiometry: 1.0
species: 571076
type: SpeciesReference

591861
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

581328
product: 581352
reactant: 581340
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: conversion to "mass" metabolite of triacylglycerol
type: Reaction

598537
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET
type: SpeciesReference

618743
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

618008
stoichiometry: 1.0
species: M CHORISMATE LBRACKET C RBRACKET
type: SpeciesReference

M PHOSPHORIBOSYL DASH CARBOXY DASH AMINOIMIDAZOLE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
constant: false
boundary condition: false
is: C04751
is: 5aizc
name: phosphoribosyl-carboxy-aminoimidazole
is: PHOSPHORIBOSYL-CARBOXY-AMINOIMIDAZOLE
in compartment: 570138
initial amount: NaN

607712
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

571846
stoichiometry: 1.0
species: M IMINOASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

M D DASH SERINE LBRACKET E RBRACKET
is: C00740
boundary condition: false
constant: false
has only substance units: false
name: d-serine
initial concentration: NaN
type: Species
is: D-SERINE
in compartment: 570126
is: ser-D
initial amount: NaN

595865
stoichiometry: 1.0
species: M 3 DASH KETO DASH ADIPATE LBRACKET C RBRACKET
type: SpeciesReference

573315
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

607676
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

606365
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M BENZOATE LBRACKET P RBRACKET
name: benzoate
is: C00180
initial concentration: NaN
constant: false
initial amount: NaN
has only substance units: false
in compartment: 570114
boundary condition: false
is: BENZOATE
type: Species
is: bz

582678
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

585833
stoichiometry: 1.0
species: M NITRATE LBRACKET E RBRACKET
type: SpeciesReference

M C8 COLON 0 DASH ACP LBRACKET C RBRACKET
is: C05752
type: Species
initial concentration: NaN
is: ocACP
initial amount: NaN
has only substance units: false
in compartment: 570138
constant: false
boundary condition: false
is: OCTANOYL-ACP
name: octanoyl-acp

612423
reactant: 612436
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of acetoacetate
type: Reaction

614260
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

611629
stoichiometry: 1.0
species: 570162
type: SpeciesReference

613555
stoichiometry: 1.0
species: M DEOXYCYTIDINE LBRACKET C RBRACKET
type: SpeciesReference

606558
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

591693
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

616354
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

587578
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

596575
stoichiometry: 1.0
species: M ADENYLOSUCC LBRACKET C RBRACKET
type: SpeciesReference

R RXN DASH 3641
name: beta-ketoadipyl coa thiolase
reactant: 578272
product: 578296
type: Reaction
reactant: 578260
notes: GENE_ASSOCIATION: ACIAD1450 or ACIAD1689 or ACIAD1706
is: RXN-3641
product: 578284
reversible: false
fast: false

583195
reactant: 583207
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: exchange flux of o2
type: Reaction

604994
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

604848
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

591247
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

594370
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

594612
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

571016
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-hydroxyoctadec-9-enoyl-coa
type: Species

R TRANS DASH RXNIM DASH 5731
product: 591476
reactant: 591463
notes: GENE_ASSOCIATION: ACIAD0118 or ACIAD2662
is: TRANS-RXNIM-5731
fast: false
reversible: false
name: transport of d-serine [extraorganism;cytosol](passive)
type: Reaction

608097
stoichiometry: 1.0
species: M UDP DASH OHMYR DASH ACETYLGLUCOSAMINE LBRACKET C RBRACKET
type: SpeciesReference

612965
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

M DGDP LBRACKET C RBRACKET
has only substance units: false
is: DGDP
is: dgdp
name: dgdp
initial amount: NaN
boundary condition: false
in compartment: 570138
type: Species
initial concentration: NaN
constant: false
is: C00361

605921
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

579621
stoichiometry: 1.0
species: M C12 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

588370
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

570535
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ACYL-COA_WAX
type: Species

585133
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

576418
stoichiometry: 1.0
species: M TTP LBRACKET C RBRACKET
type: SpeciesReference

604211
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

M GLYCEROL DASH 3P LBRACKET C RBRACKET
in compartment: 570138
is: GLYCEROL-3P
initial amount: NaN
is: glyc3p
name: glycerol-3-phosphate
type: Species
constant: false
is: C00093
initial concentration: NaN
has only substance units: false
boundary condition: false

585025
stoichiometry: 1.0
species: M 2K DASH 4CH3 DASH PENTANOATE LBRACKET C RBRACKET
type: SpeciesReference

M NITRATE LBRACKET E RBRACKET
is: NITRATE
type: Species
initial amount: NaN
boundary condition: false
in compartment: 570126
is: no3
name: no3-
is: C00244
initial concentration: NaN
has only substance units: false
constant: false

M L DASH 1 DASH PHOSPHATIDYL DASH GLYCEROL LBRACKET C RBRACKET
initial amount: NaN
constant: false
initial concentration: NaN
is: C00344
name: generic l-1-phosphatidyl-glycerol
type: Species
boundary condition: false
is: L-1-PHOSPHATIDYL-GLYCEROL
in compartment: 570138
has only substance units: false

583183
stoichiometry: 0.5013
species: 571136
type: SpeciesReference

611821
stoichiometry: 1.0
species: M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET
type: SpeciesReference

609509
stoichiometry: 0.56
species: M 3 DASH OHLAUROYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

576563
stoichiometry: 1.0
species: M DEOXYGUANOSINE LBRACKET C RBRACKET
type: SpeciesReference

610654
product: 610702
product: 610690
reactant: 610678
reactant: 610666
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: long chain aldehyde reductase (c18:1(c9))
type: Reaction

597673
stoichiometry: 1.0
species: M 3 DASH OXOPIMELOYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

598984
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

603898
stoichiometry: 1.0
species: M RIBOFLAVIN LBRACKET C RBRACKET
type: SpeciesReference

M HYDROXYMETHYLBILANE LBRACKET C RBRACKET
type: Species
boundary condition: false
is: HYDROXYMETHYLBILANE
is: hmbil
is: C01024
in compartment: 570138
initial concentration: NaN
name: hydroxymethylbilane
initial amount: NaN
has only substance units: false
constant: false

610581
reactant: 610593
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of shikimate
type: Reaction

572855
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET
type: SpeciesReference

578068
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

599322
stoichiometry: 1.0
species: M N DASH LPAREN 5 DASH PHOSPHORIBOSYL RPAREN DASH ANTHRANILATE LBRACKET C RBRACKET
type: SpeciesReference

R C8 COLON 0 DASH 2ENOYLACP DASH REDUCTASE DASH RXN
name: 2enoyl-acp reductase (c8:0)
is: EAR80x
is: ENOYL-ACP-REDUCT-NADH-RXN
type: Reaction
reversible: false
product: 598320
reactant: 598308
product: 598332
fast: false
notes: GENE_ASSOCIATION: ACIAD3116
reactant: 598296

579849
stoichiometry: 1.0
species: M PHENYL DASH PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

580382
stoichiometry: 1.0
species: M PHOSPHO DASH HYDROXY DASH THREONINE LBRACKET C RBRACKET
type: SpeciesReference

594478
reactant: 594491
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: exchange flux of nh4+
type: Reaction

599033
stoichiometry: 1.0
species: M THYMIDINE LBRACKET C RBRACKET
type: SpeciesReference

585725
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

603994
stoichiometry: 1.0
species: M ADENOSINE LBRACKET C RBRACKET
type: SpeciesReference

597525
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

618791
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

578922
stoichiometry: 1.0
species: M URACIL LBRACKET C RBRACKET
type: SpeciesReference

592090
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET
type: SpeciesReference

581448
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

588106
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

600127
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R BADH DASH RXN
is: BADH-RXN
reactant: 585193
is: BETALDHx
reactant: 585169
reversible: true
type: Reaction
name: betaine-aldehyde dehydrogenase
fast: false
product: 585217
product: 585205
notes: GENE_ASSOCIATION: ACIAD1009
reactant: 585181

R TRANS DASH RXNIM DASH 5733
product: 591500
reactant: 591488
notes: GENE_ASSOCIATION: ACIAD0118 or ACIAD2662
is: TRANS-RXNIM-5733
fast: false
reversible: false
name: transport of d-alanine [extraorganism;cytosol](passive)
type: Reaction

597380
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

R C10 COLON 0 DASH COA DASH THIOLASE DASH RXN
is: FACOAE100
is: THIOESTER-RXN
reactant: 579681
fast: false
product: 579705
product: 579693
type: Reaction
reversible: false
reactant: 579669
name: acyl-coa thiolase (c10:0)
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023

R H2PTERIDINEPYROPHOSPHOKIN DASH RXN
reversible: true
product: 611448
type: Reaction
fast: false
notes: GENE_ASSOCIATION: ACIAD3062
reactant: 611436
product: 611460
name: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
reactant: 611424
is: H2PTERIDINEPYROPHOSPHOKIN-RXN
is: HPPK2

M CPD DASH 1301 LBRACKET C RBRACKET
boundary condition: false
is: CPD-1301
initial concentration: NaN
type: Species
name: tetrahydropteroyltri-l-glutamate
constant: false
in compartment: 570138
initial amount: NaN
is: C04144
is: hpglu
has only substance units: false

584629
stoichiometry: 1.0
species: M L DASH ORNITHINE LBRACKET C RBRACKET
type: SpeciesReference

586530
stoichiometry: 1.0
species: 570559
type: SpeciesReference

578790
stoichiometry: 1.0
species: M UDP LBRACKET C RBRACKET
type: SpeciesReference

593560
stoichiometry: 1.0
species: M C12 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: SpeciesReference

577888
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

583399
stoichiometry: 1.0
species: M 3 DASH KETO DASH ADIPATE LBRACKET C RBRACKET
type: SpeciesReference

M DELTA LBRACE 1 RBRACE DASH PIPERIDEINE DASH 2 DASH 6 DASH DICARBOXYLATE LBRACKET C RBRACKET
type: Species
is: DELTA{1}-PIPERIDEINE-2-6-DICARBOXYLATE
constant: false
boundary condition: false
has only substance units: false
initial amount: NaN
is: C03972
name: tetrahydrodipicolinate
in compartment: 570138
is: thdp
initial concentration: NaN

617694
stoichiometry: 1.0
species: M DIHYDROSIROHYDROCHLORIN LBRACKET C RBRACKET
type: SpeciesReference

603176
stoichiometry: 4.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

R HOMOSERINE DASH O DASH ACETYLTRANSFERASE DASH RXN
is: HOMOSERINE-O-ACETYLTRANSFERASE-RXN
is: HSERTA
type: Reaction
fast: false
product: 614124
reactant: 614112
reactant: 614099
product: 614137
name: homoserine o-acetyltransferase
notes: GENE_ASSOCIATION: ACIAD0529
reversible: true

576779
stoichiometry: 1.0
species: 570450
type: SpeciesReference

584401
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

573639
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

M P DASH AMINO DASH BENZOATE LBRACKET C RBRACKET
name: p-aminobenzoate
initial concentration: NaN
boundary condition: false
is: 4abz
is: C00568
constant: false
has only substance units: false
initial amount: NaN
is: P-AMINO-BENZOATE
in compartment: 570138
type: Species

603682
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

577671
stoichiometry: 1.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET
type: SpeciesReference

M D DASH GALACTARATE LBRACKET C RBRACKET
is: C00879
is: D-GALACTARATE
constant: false
type: Species
boundary condition: false
is: galct-D
initial amount: NaN
in compartment: 570138
initial concentration: NaN
name: d-galactarate
has only substance units: false

606714
stoichiometry: 1.0
species: M N DASH LPAREN 5 DASH PHOSPHORIBOSYL RPAREN DASH ANTHRANILATE LBRACKET C RBRACKET
type: SpeciesReference

602214
stoichiometry: 1.0
species: M DPG LBRACKET C RBRACKET
type: SpeciesReference

613883
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

605789
stoichiometry: 1.0
species: M PRO DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

586470
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

M DEOXYADENOSINE LBRACKET E RBRACKET
is: DEOXYADENOSINE
initial amount: NaN
in compartment: 570126
is: dad-2
type: Species
name: deoxyadenosine
boundary condition: false
is: C00559
has only substance units: false
constant: false
initial concentration: NaN

572471
stoichiometry: 1.0
species: M UDP DASH AAGM DASH DIAMINOHEPTANEDIOATE LBRACKET C RBRACKET
type: SpeciesReference

615296
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

R PROPKIN DASH RXN
notes: GENE_ASSOCIATION: ACIAD0541
reactant: 599694
is: PPAKr
reactant: 599706
reversible: true
name: propionate kinase
fast: false
product: 599730
is: PROPKIN-RXN
product: 599718
type: Reaction

607170
stoichiometry: 1.0
species: M C12 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

R DTDPKIN DASH RXN
notes: GENE_ASSOCIATION: ACIAD0556
is: NDPK4
product: 600692
type: Reaction
reactant: 600680
fast: false
name: dtdp kinase
product: 600704
is: DTDPKIN-RXN
reversible: true
reactant: 600668

599478
stoichiometry: 0.24
species: M C16 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

612856
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

580274
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

612026
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

575058
stoichiometry: 1.0
species: M 5 DASH AMINO DASH LEVULINATE LBRACKET C RBRACKET
type: SpeciesReference

596370
stoichiometry: 1.0
species: M SUBERATE LBRACKET E RBRACKET
type: SpeciesReference

586110
stoichiometry: 1.0
species: M N2 DASH SUCCINYLORNITHINE LBRACKET C RBRACKET
type: SpeciesReference

R C14 COLON 1 LPAREN C5 RPAREN DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
product: 603489
product: 603477
reactant: 603465
notes: GENE_ASSOCIATION: ACIAD1381
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
fast: false
reversible: false
name: 3hydroxyacyl-acp dehydratase (c14:1(c5))
type: Reaction

R GUANYL DASH KIN DASH RXN
notes: GENE_ASSOCIATION: ACIAD3324
product: 595805
reactant: 595768
type: Reaction
fast: false
is: GUANYL-KIN-RXN
name: gmp kinase
is: GK1
reactant: 595781
product: 595793
reversible: true

589872
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

M TAURINE LBRACKET E RBRACKET
initial concentration: NaN
is: taur
initial amount: NaN
is: TAURINE
boundary condition: false
name: taurine
is: C00245
constant: false
in compartment: 570126
type: Species
has only substance units: false

607458
stoichiometry: 0.08
species: M THIAMINE DASH PYROPHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

R GTP DASH CYCLOHYDRO DASH II DASH RXN
product: 615704
notes: GENE_ASSOCIATION: ACIAD3249
product: 615692
reactant: 615668
fast: false
name: gtp cyclohydrolase ii
is: GTPCII2
type: Reaction
reversible: true
is: GTP-CYCLOHYDRO-II-RXN
reactant: 615680
product: 615716

598645
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

M CHLOROGENATE LBRACKET E RBRACKET
boundary condition: false
type: Species
is: C00852
is: CHLOROGENATE
initial amount: NaN
initial concentration: NaN
constant: false
name: chlorogenate
has only substance units: false
in compartment: 570126

594587
stoichiometry: 1.0
species: M RED DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
type: SpeciesReference

610244
stoichiometry: 1.0
species: M LYS LBRACKET C RBRACKET
type: SpeciesReference

R AICARSYN DASH RXN
reactant: 602936
is: AICARSYN-RXN
reversible: true
product: 602948
name: adenylosuccinate lyase
type: Reaction
fast: false
is: ADSL2r
product: 602960
notes: GENE_ASSOCIATION: ACIAD1219

R TRANS DASH RXN DASH MALONATE
name: transport of malonate [extraorganism;cytosol](secondary symport)
reactant: 591681
reactant: 591693
type: Reaction
product: 591717
product: 591705
notes: GENE_ASSOCIATION: ACIAD0710 or ACIAD2956
is: RXNIM-6218
fast: false
reversible: true

613338
stoichiometry: 1.0
species: M C10 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

592246
stoichiometry: 1.0
species: M CYS LBRACKET C RBRACKET
type: SpeciesReference

591355
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

594260
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M 3 DASH OCTAPRENYL DASH 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET
has only substance units: false
is: 3ophb
initial amount: NaN
in compartment: 570138
is: C05809
boundary condition: false
is: 3-OCTAPRENYL-4-HYDROXYBENZOATE
type: Species
name: 3-octaprenyl-4-hydroxybenzoate
initial concentration: NaN
constant: false

584845
stoichiometry: 1.37
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

602166
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R PRPPAMIDOTRANS DASH RXN
name: amidophosphoribosyltransferase
reactant: 594948
type: Reaction
is: GLUPRT
product: 594996
product: 595008
reactant: 594972
fast: false
product: 594984
reactant: 594960
is: PRPPAMIDOTRANS-RXN
reversible: false
notes: GENE_ASSOCIATION: ACIAD1323

598875
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

610870
stoichiometry: 2.0
species: M CH33ADO LBRACKET C RBRACKET
type: SpeciesReference

616017
stoichiometry: 1.0
species: M CARBAMOYL DASH P LBRACKET C RBRACKET
type: SpeciesReference

R C16 COLON 0 DASH ACP DASH HYDROLASE DASH RXN
fast: false
reactant: 617091
is: FA160ACPHi
reactant: 617079
product: 617103
reversible: false
product: 617115
type: Reaction
name: acyl-acp hydrolase (c16:0)
notes: GENE_ASSOCIATION:

585242
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

610196
stoichiometry: 1.0
species: M 5 DASH PHOSPHORIBOSYL DASH 5 DASH AMINOIMIDAZOLE LBRACKET C RBRACKET
type: SpeciesReference

604102
stoichiometry: 1.0
species: M FRU LBRACKET E RBRACKET
type: SpeciesReference

611978
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

M C12 COLON 1 LPAREN C3 RPAREN DASH COA LBRACKET C RBRACKET
is: C02944
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-dodec-3-enoyl-coa
type: Species

602900
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

610352
stoichiometry: 4.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

605897
stoichiometry: 1.0
species: M CPD DASH 218 LBRACKET E RBRACKET
type: SpeciesReference

R PTAALT DASH RXN
reversible: true
reactant: 585400
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0540
fast: false
name: phosphate acetyltransferase
reactant: 585387
product: 585424
is: PTAALT-RXN
product: 585412
is: PTA2

592886
stoichiometry: 1.0
species: M PROPIONATE LBRACKET E RBRACKET
type: SpeciesReference

R BENZOATE DASH DIOXYGENASE DASH NON DASH DECARBOX DASH RXN
product: 615932
reversible: false
notes: GENE_ASSOCIATION: ACIAD1436 and ACIAD1437 and ACIAD1438
name: benzoate 1,2-dioxygenase
reactant: 615884
type: Reaction
reactant: 615896
fast: false
reactant: 615908
product: 615920
is: BENZOATE-DIOXYGENASE-NON-DECARBOX-RXN

609159
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET
type: SpeciesReference

604632
stoichiometry: 1.0
species: 570595
type: SpeciesReference

604776
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

603465
stoichiometry: 1.0
species: 570222
type: SpeciesReference

593451
stoichiometry: 1.0
species: M DIHYDROFOLATE LBRACKET C RBRACKET
type: SpeciesReference

615188
reactant: 615200
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of benzyl alcohol
type: Reaction

585617
stoichiometry: 0.06
species: M C18 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

581556
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

587998
stoichiometry: 3.005
species: 570583
type: SpeciesReference

586687
stoichiometry: 1.0
species: M GLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

591608
stoichiometry: 1.0
species: M WATER LBRACKET P RBRACKET
type: SpeciesReference

613991
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M CYTIDINE LBRACKET E RBRACKET
boundary condition: false
type: Species
is: C00475
has only substance units: false
in compartment: 570126
initial concentration: NaN
is: CYTIDINE
name: cytidine
initial amount: NaN
is: cytd
constant: false

574445
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

575395
stoichiometry: 1.0
species: M MANNOSE DASH 1P LBRACKET C RBRACKET
type: SpeciesReference

597738
product: 597764
reactant: 597751
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of caffeate [extraorganism;periplasm](passive)
type: Reaction

575106
stoichiometry: 1.0
species: M SULFATE LBRACKET E RBRACKET
type: SpeciesReference

R ASPARTATEKIN DASH RXN
is: ASPARTATEKIN-RXN
product: 600860
reactant: 600824
reactant: 600836
name: aspartate kinase
is: ASPK
notes: GENE_ASSOCIATION: ACIAD1252
product: 600848
type: Reaction
reversible: false
fast: false

R TRANS DASH RXNIM DASH 5899
product: 604848
reactant: 604836
is: ASPabcpp
reactant: 604812
type: Reaction
reactant: 604824
product: 604860
notes: GENE_ASSOCIATION: ACIAD2056 and ACIAD2058 and ACIAD2059 and ACIAD2061
fast: false
name: transport of l-aspartate [extraorganism;cytosol](primary active atp)
reversible: false
product: 604872
is: TRANS-RXNIM-5899

597416
stoichiometry: 1.0
species: M FMN LBRACKET C RBRACKET
type: SpeciesReference

594188
stoichiometry: 1.0
species: M DEHYDROQUINATE LBRACKET P RBRACKET
type: SpeciesReference

617586
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

R PHOSGLUCOSAMINEMUT DASH RXN
product: 616899
reactant: 616887
notes: GENE_ASSOCIATION: ACIAD3502
is: PHOSGLUCOSAMINEMUT-RXN
is: PGAMT
fast: false
reversible: true
name: phosphoglucosamine mutase
type: Reaction

M CARNITINE LBRACKET C RBRACKET
has only substance units: false
is: C00318
is: crn
is: CARNITINE
name: l-carnitine
initial amount: NaN
type: Species
in compartment: 570138
constant: false
initial concentration: NaN
boundary condition: false

R R11 DASH RXN
reactant: 592958
is: BUTCT
is: R11-RXN
product: 592994
reversible: true
notes: GENE_ASSOCIATION: ACIAD2514 and ACIAD2513
name: acetate coa-transferase
reactant: 592970
type: Reaction
product: 592982
fast: false

606401
stoichiometry: 1.0
species: M N2 DASH SUCCINYLGLUTAMATE LBRACKET C RBRACKET
type: SpeciesReference

579513
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

M TRIACYLGLYCEROL LBRACKET C RBRACKET
is: C00422
in compartment: 570138
boundary condition: false
constant: false
name: triacylglycerol
type: Species
is: TRIACYLGLYCEROL
has only substance units: false
initial amount: NaN
initial concentration: NaN

586506
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

594696
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

594720
stoichiometry: 1.0
species: M 3 DASH OXOPIMELOYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M C8 COLON 0 DASH COA LBRACKET C RBRACKET
constant: false
is: occoa
initial concentration: NaN
has only substance units: false
in compartment: 570138
is: C01944
initial amount: NaN
name: octanoyl-coa
type: Species
is: CPD-196
boundary condition: false

571124
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: COPROPORPHYRINOGEN_III
type: Species

573747
stoichiometry: 1.0
species: M L DASH CYSTATHIONINE LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH COUMARATE
type: Reaction
product: 598767
fast: false
product: 598779
reactant: 598743
name: transport of 4-coumarate [extraorganism;cytosol](secondary symport)
is: TRANS-RXNIM-5917
reversible: true
reactant: 598755
notes: GENE_ASSOCIATION: ACIAD1709

M PHOSPHORIBOSYL DASH AMP LBRACKET C RBRACKET
initial amount: NaN
has only substance units: false
in compartment: 570138
is: PHOSPHORIBOSYL-AMP
is: C02741
boundary condition: false
type: Species
is: prbamp
initial concentration: NaN
constant: false
name: phosphoribosyl-amp

R PYRIMSYN1 DASH RXN
reactant: 610208
name: 4-amino-2-methyl-5-phosphomethylpyrimidine synthetase
is: PYRIMSYN1-RXN
product: 610220
reversible: true
fast: false
notes: GENE_ASSOCIATION: ACIAD0276
type: Reaction
is: AMPMS2
reactant: 610196
product: 610232

575250
stoichiometry: 1.0
species: M 4 DASH HYDROXYBENZALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

M KDO2 DASH LIPID DASH IVA LBRACKET C RBRACKET
is: KDO2-LIPID-IVA
constant: false
name: kdo2-lipid iva
initial amount: NaN
is: kdo2lipid4
boundary condition: false
is: C06025
type: Species
in compartment: 570138
has only substance units: false
initial concentration: NaN

600235
stoichiometry: 1.0
species: M GLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

R C16 COLON 1 LPAREN C7 RPAREN DASH 3OXOCOA DASH THIOLASE DASH RXN
fast: false
name: 3oxoacyl-coa thiolase (c16:1(c7))
product: 593512
type: Reaction
is: KETOACYLCOATHIOL-RXN
product: 593499
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
reversible: true
reactant: 593487
reactant: 593475

M ALLANTOATE LBRACKET C RBRACKET
initial concentration: NaN
is: C00499
boundary condition: false
constant: false
is: ALLANTOATE
name: allantoate
type: Species
is: alltt
has only substance units: false
initial amount: NaN
in compartment: 570138

617332
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

576069
stoichiometry: 1.0
species: M DEOXYINOSINE LBRACKET E RBRACKET
type: SpeciesReference

601402
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

595490
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M DIHYDROSIROHYDROCHLORIN LBRACKET C RBRACKET
boundary condition: false
is: DIHYDROSIROHYDROCHLORIN
is: C02463
type: Species
initial amount: NaN
initial concentration: NaN
in compartment: 570138
has only substance units: false
constant: false
name: dihydrosirohydrochlorin
is: dscl

582363
stoichiometry: 5.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

595550
stoichiometry: 1.0
species: 570450
type: SpeciesReference

618683
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

609908
stoichiometry: 1.0
species: 570270
type: SpeciesReference

R HISTPRATPHYD DASH RXN
reversible: false
reactant: 572603
product: 572639
is: HISTPRATPHYD-RXN
name: phosphoribosyl-atp pyrophosphatase
is: PRATPP
type: Reaction
fast: false
reactant: 572615
notes: GENE_ASSOCIATION: ACIAD0380
product: 572627

589764
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

590837
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET
type: SpeciesReference

590089
stoichiometry: 1.0
species: M HISTIDINAL LBRACKET C RBRACKET
type: SpeciesReference

596719
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

604548
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

R ISOLEUCINE DASH DASH TRNA DASH LIGASE DASH RXN
reversible: false
is: ISOLEUCINE--TRNA-LIGASE-RXN
reactant: 605090
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0022
name: isoleucine--trna ligase
reactant: 605066
product: 605126
product: 605102
fast: false
reactant: 605078
product: 605114
is: ILETRS

587961
product: 588010
product: 587998
reactant: 587985
reactant: 587973
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: generic lps assembly
type: Reaction

M L DASH PANTOATE LBRACKET C RBRACKET
constant: false
is: L-PANTOATE
has only substance units: false
initial concentration: NaN
boundary condition: false
is: pant-R
in compartment: 570138
initial amount: NaN
name: l-pantoate
is: C00522
type: Species

M DEHYDROQUINATE LBRACKET C RBRACKET
is: DEHYDROQUINATE
has only substance units: false
initial amount: NaN
boundary condition: false
initial concentration: NaN
is: C00944
constant: false
in compartment: 570138
type: Species
is: 3dhq
name: 3-dehydroquinate

573205
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

611400
stoichiometry: 1.0
species: M 4 DASH HYDROXYBENZALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

589283
stoichiometry: 2.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET
type: SpeciesReference

597959
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

617501
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

R INORGPYROPHOSPHAT DASH RXN
name: inorganic pyrophosphatase
reactant: 586170
product: 586194
is: INORGPYROPHOSPHAT-RXN
notes: GENE_ASSOCIATION: ACIAD0239
fast: false
is: PPA
reversible: false
reactant: 586182
type: Reaction

607868
stoichiometry: 1.0
species: M RIBOSE LBRACKET C RBRACKET
type: SpeciesReference

604150
stoichiometry: 1.0
species: M CPD DASH 3623 LBRACKET C RBRACKET
type: SpeciesReference

576984
stoichiometry: 1.0
species: M UREA LBRACKET C RBRACKET
type: SpeciesReference

608809
stoichiometry: 0.04
species: M SER DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

618851
stoichiometry: 1.0
species: M C10 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

584557
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

578284
stoichiometry: 1.0
species: M SUC DASH COA LBRACKET C RBRACKET
type: SpeciesReference

R DARAB5PISOM DASH RXN
product: 588034
reactant: 588022
notes: GENE_ASSOCIATION: ACIAD1482
is: DARAB5PISOM-RXN
is: A5PISO
fast: false
reversible: true
name: arabinose-5-phosphate isomerase
type: Reaction

R 2 DASH DEHYDROPANTOATE DASH REDUCT DASH RXN
name: 2-dehydropantoate 2-reductase
reactant: 578549
is: 2-DEHYDROPANTOATE-REDUCT-RXN
product: 578573
reactant: 578537
fast: false
product: 578561
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3102
reversible: true
is: DPR

583243
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

615308
stoichiometry: 1.0
species: M CHARGED DASH HIS DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

577563
stoichiometry: 1.0
species: M CPDIM DASH 6112 LBRACKET E RBRACKET
type: SpeciesReference

587817
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET
type: SpeciesReference

R ACETYL DASH COA DASH ACETYLTRANSFER DASH RXN
is: ACACT1r
reversible: true
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2516 or ACIAD0694
reactant: 575781
is: ACETYL-COA-ACETYLTRANSFER-RXN
fast: false
product: 575793
reactant: 575769
name: acetyl-coa c-acetyltransferase

599394
reactant: 599406
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of glycolate
type: Reaction

611893
stoichiometry: 1.0
species: M ADENOSYL DASH P4 LBRACKET C RBRACKET
type: SpeciesReference

581894
stoichiometry: 1.0
species: M PI LBRACKET E RBRACKET
type: SpeciesReference

590126
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

614864
stoichiometry: 1.0
species: M GLYCEROL LBRACKET C RBRACKET
type: SpeciesReference

581942
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

615884
stoichiometry: 1.0
species: M BENZOATE LBRACKET C RBRACKET
type: SpeciesReference

R PROLINE DASH DASH TRNA DASH LIGASE DASH RXN
reactant: 605777
fast: false
type: Reaction
is: PROTRS
product: 605813
reversible: false
is: PROLINE--TRNA-LIGASE-RXN
notes: GENE_ASSOCIATION: ACIAD0782
product: 605837
name: proline--trna ligase
reactant: 605789
product: 605825
reactant: 605801

M THZ LBRACKET C RBRACKET
is: C04294
initial concentration: NaN
constant: false
boundary condition: false
in compartment: 570138
initial amount: NaN
type: Species
is: THZ
name: 4-methyl-5-(beta-hydroxyethyl)thiazole
has only substance units: false
is: 4mhetz

585508
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

598188
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

586808
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

R S DASH ADENMETSYN DASH RXN
product: 581846
fast: false
is: S-ADENMETSYN-RXN
is: METAT
product: 581858
reversible: false
reactant: 581821
notes: GENE_ASSOCIATION: ACIAD2037
product: 581833
reactant: 581797
type: Reaction
name: methionine adenosyltransferase
reactant: 581809

615104
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

588839
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH CARBOXY DASH AMINOIMIDAZOLE LBRACKET C RBRACKET
type: SpeciesReference

M PROTOHEME LBRACKET C RBRACKET
in compartment: 570138
is: pheme
type: Species
is: C00032
name: protoheme
has only substance units: false
constant: false
initial concentration: NaN
is: PROTOHEME
initial amount: NaN
boundary condition: false

M PORPHOBILINOGEN LBRACKET C RBRACKET
is: ppbng
constant: false
name: porphobilinogen
is: PORPHOBILINOGEN
has only substance units: false
initial concentration: NaN
is: C00931
boundary condition: false
in compartment: 570138
initial amount: NaN
type: Species

600596
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

612484
stoichiometry: 1.0
species: M OH DASH MYRISTOYL LBRACKET C RBRACKET
type: SpeciesReference

584341
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

603742
stoichiometry: 1.0
species: M P DASH AMINO DASH BENZOATE LBRACKET C RBRACKET
type: SpeciesReference

611737
stoichiometry: 1.0
species: M 2 DASH C DASH METHYL DASH D DASH ERYTHRITOL DASH 4 DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

R C14 COLON 1 LPAREN C5 RPAREN DASH COA DASH DEHYDROGENASE DASH RXN
reactant: 617886
product: 617899
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566
reactant: 617874
product: 617911
fast: false
is: ACYLCOADEHYDROG-RXN
name: acyl-coa dehydrogenase (c14:1(c5))

579585
stoichiometry: 1.0
species: M PRO LBRACKET C RBRACKET
type: SpeciesReference

571774
stoichiometry: 1.0
species: M C12 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

577190
stoichiometry: 1.0
species: M C12 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 148 LBRACKET E RBRACKET
initial amount: NaN
initial concentration: NaN
name: octane
is: C01387
boundary condition: false
in compartment: 570126
constant: false
is: CPD-148
has only substance units: false
type: Species

595973
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

570463
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans-3-oxohex-4-enoyl-coa
type: Species

616644
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

613749
stoichiometry: 1.0
species: M 8 DASH AMINO DASH 7 DASH OXONONANOATE LBRACKET C RBRACKET
type: SpeciesReference

R 2 DASH METHYLCITRATE DASH SYNTHASE DASH RXN
product: 605703
name: 2-methylcitrate synthase
is: MCITS
reactant: 605679
reactant: 605667
reactant: 605691
product: 605716
notes: GENE_ASSOCIATION: ACIAD2756
type: Reaction
reversible: false
fast: false
is: 2-METHYLCITRATE-SYNTHASE-RXN

573157
stoichiometry: 2.0
species: M 2 DASH OCTAPRENYL DASH 6 DASH HYDROXYPHENOL LBRACKET C RBRACKET
type: SpeciesReference

M WATER LBRACKET C RBRACKET
in compartment: 570138
initial amount: NaN
boundary condition: false
type: Species
has only substance units: false
constant: false
initial concentration: NaN
is: C00001
name: h2o
is: h2o
is: WATER

582786
product: 582810
reactant: 582798
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of pyruvate [extraorganism;cytosol](passive)
type: Reaction

606149
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

578573
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

602756
stoichiometry: 1.0
species: M L DASH ORNITHINE LBRACKET E RBRACKET
type: SpeciesReference

574385
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET
type: SpeciesReference

587025
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R UROGENIIISYN DASH RXN
name: uroporphyrinogen-iii synthase
reversible: true
reactant: 588562
fast: false
notes: GENE_ASSOCIATION: ACIAD0287
type: Reaction
product: 588586
product: 588574
is: UROGENIIISYN-RXN
is: UPP3S

R TRANS DASH RXNIM DASH 5812
product: 582605
name: transport of l-arginine [extraorganism;cytosol](secondary symport)
type: Reaction
product: 582593
reactant: 582569
fast: false
notes: GENE_ASSOCIATION: ACIAD1417
reactant: 582581
is: TRANS-RXNIM-5812
is: ARGt3pp
reversible: false

R 1 PERIOD 2 PERIOD 1 PERIOD 67 DASH RXN
notes: GENE_ASSOCIATION: ACIAD1725
product: 617622
reactant: 617598
is: 1.2.1.67-RXN
type: Reaction
name: vanillin dehydrogenase
fast: false
reactant: 617574
product: 617610
reactant: 617586
reversible: true

M CPD DASH 205 LBRACKET E RBRACKET
in compartment: 570126
initial amount: NaN
initial concentration: NaN
has only substance units: false
constant: false
is: C02656
name: pimelate
type: Species
is: pime
is: CPD-205
boundary condition: false

597163
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

M D DASH ALANINE LBRACKET C RBRACKET
initial concentration: NaN
is: D-ALANINE
is: ala-D
name: d-alanine
has only substance units: false
constant: false
initial amount: NaN
boundary condition: false
in compartment: 570138
type: Species
is: C00133

M HS LBRACKET C RBRACKET
is: h2s
has only substance units: false
initial amount: NaN
name: h2s
constant: false
type: Species
boundary condition: false
is: C00283
initial concentration: NaN
is: HS
in compartment: 570138

R HEMEOSYN DASH RXN
reactant: 593801
name: protoheme ix farnesyltransferase
reactant: 593813
product: 593825
fast: false
product: 593837
notes: GENE_ASSOCIATION: ACIAD2429
type: Reaction
is: HEMEOS
reactant: 593789
reversible: true
is: HEMEOSYN-RXN

593959
stoichiometry: 1.0
species: M BETAINE LBRACKET E RBRACKET
type: SpeciesReference

572507
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXNIM DASH 5895
notes: GENE_ASSOCIATION: ACIAD3241 and ACIAD3242 and ACIAD3243 and ACIAD3244
product: 593042
fast: false
reversible: false
reactant: 593006
type: Reaction
name: transport of toluene [extraorganism;cytosol](primary active atp)
reactant: 593018
reactant: 593030
product: 593054
product: 593066
is: TRANS-RXNIM-5895

583459
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET
type: SpeciesReference

615644
stoichiometry: 1.0
species: M AMMONIUM LBRACKET E RBRACKET
type: SpeciesReference

587685
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

570607
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-tetradec-4-enoyl-coa
type: Species

R CHORISMATE DASH SYNTHASE DASH RXN
reactant: 586651
product: 586663
product: 586675
is: CHORS
name: chorismate synthase
type: Reaction
reversible: false
fast: false
notes: GENE_ASSOCIATION: ACIAD2028
is: CHORISMATE-SYNTHASE-RXN

574662
stoichiometry: 1.0
species: M P3I LBRACKET C RBRACKET
type: SpeciesReference

591584
stoichiometry: 1.0
species: M C12 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: SpeciesReference

611026
stoichiometry: 40.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

612532
stoichiometry: 1.0
species: M N2 DASH SUCCINYLGLUTAMATE LBRACKET C RBRACKET
type: SpeciesReference

617127
stoichiometry: 1.0
species: M SHIKIMATE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

614900
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

608688
stoichiometry: 0.01
species: M HIS DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

609691
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R RXN0 DASH 882
reactant: 589668
reversible: true
is: RXN0-882
product: 589680
product: 589692
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0561
name: 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase
reactant: 589656
fast: false

587781
stoichiometry: 1.0
species: M DI DASH CH3 DASH ALLYL DASH PPI LBRACKET C RBRACKET
type: SpeciesReference

R UDPNACETYLGLUCOSAMENOLPYRTRANS DASH RXN
is: UAGCVT
name: udp-n-acetylglucosamine 1-carboxyvinyltransferase
product: 578886
is: UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN
reactant: 578874
type: Reaction
reactant: 578862
reversible: false
notes: GENE_ASSOCIATION: ACIAD0660
fast: false
product: 578898

570318
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-octadec-9-enol
type: Species

R DLACTDEHYDROGFAD DASH RXN
reactant: 573939
is: DLACTDEHYDROGFAD-RXN
fast: false
product: 573963
reversible: false
reactant: 573951
product: 573975
type: Reaction
is: LDH D2
notes: GENE_ASSOCIATION: ACIAD0109
name: d-lactate dehydrogenase, fad

M UNDECAPRENYL DASH P LBRACKET C RBRACKET
is: udcpp
initial amount: NaN
boundary condition: false
has only substance units: false
is: C00348
in compartment: 570138
initial concentration: NaN
constant: false
type: Species
name: undecaprenyl phosphate
is: UNDECAPRENYL-P

594406
stoichiometry: 1.0
species: M DIAMINONONANOATE LBRACKET C RBRACKET
type: SpeciesReference

601646
stoichiometry: 1.0
species: M NA PLUS LBRACKET E RBRACKET
type: SpeciesReference

M TOLUENE LBRACKET E RBRACKET
is: TOLUENE
boundary condition: false
name: toluene
initial concentration: NaN
has only substance units: false
initial amount: NaN
in compartment: 570126
type: Species
is: C01455
constant: false

575529
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

612182
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN DASH COA LBRACKET C RBRACKET
type: SpeciesReference

596635
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

572916
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

596201
stoichiometry: 1.0
species: M UDP DASH N DASH ACETYL DASH D DASH GLUCOSAMINE LBRACKET C RBRACKET
type: SpeciesReference

595334
stoichiometry: 1.0
species: M THR LBRACKET C RBRACKET
type: SpeciesReference

583752
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

576298
stoichiometry: 2.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

596851
stoichiometry: 1.0
species: M QUINOLINATE LBRACKET C RBRACKET
type: SpeciesReference

574806
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET
type: SpeciesReference

601489
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
boundary condition: false
type: Species
in compartment: 570138
constant: false
initial amount: NaN
is: C00026
is: 2-KETOGLUTARATE
is: akg
initial concentration: NaN
name: 2-oxoglutarate
has only substance units: false

M BENZOATE LBRACKET C RBRACKET
initial concentration: NaN
in compartment: 570138
is: BENZOATE
type: Species
constant: false
has only substance units: false
is: C00180
initial amount: NaN
is: bz
boundary condition: false
name: benzoate

579308
stoichiometry: 1.0
species: M FUM LBRACKET C RBRACKET
type: SpeciesReference

616162
reactant: 616174
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of homoserine
type: Reaction

601162
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

613109
stoichiometry: 1.0
species: 570631
type: SpeciesReference

592656
stoichiometry: 1.66
species: M GDP LBRACKET C RBRACKET
type: SpeciesReference

M L DASH ALPHA DASH ALANINE LBRACKET E RBRACKET
has only substance units: false
type: Species
is: L-ALPHA-ALANINE
is: C00041
constant: false
initial concentration: NaN
in compartment: 570126
initial amount: NaN
is: ala-L
boundary condition: false
name: l-alanine

581773
stoichiometry: 1.0
species: M C14 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

611242
stoichiometry: 1.0
species: M ADIPATE LBRACKET C RBRACKET
type: SpeciesReference

582942
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R ABC DASH 70 DASH RXN
reactant: 602082
reversible: false
product: 602118
product: 602106
product: 602130
reactant: 602069
name: transport of so42- [extraorganism;cytosol](primary active atp)
fast: false
reactant: 602094
is: SULabcpp
type: Reaction
is: ABC-70-RXN
notes: GENE_ASSOCIATION: ( ACIAD3369 or ACIAD2591 ) and ACIAD2594 and ACIAD2595 and ACIAD2596

573963
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

575322
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

600512
stoichiometry: 1.0
species: 571172
type: SpeciesReference

M DELTA LPAREN 3 RPAREN DASH ISOPENTENYL DASH PP LBRACKET C RBRACKET
constant: false
has only substance units: false
initial concentration: NaN
is: C00129
initial amount: NaN
name: delta3-isopentenyl-pp
type: Species
boundary condition: false
is: ipdp
in compartment: 570138
is: delta(3)-isopentenyl-pp

595406
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

600452
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

588634
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

590332
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

602082
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

587241
stoichiometry: 1.0
species: M GLUCONATE LBRACKET C RBRACKET
type: SpeciesReference

587469
stoichiometry: 1.0
species: M C16 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: SpeciesReference

585941
stoichiometry: 2.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

590909
stoichiometry: 2.0
species: M DIMETHYL DASH D DASH RIBITYL DASH LUMAZINE LBRACKET C RBRACKET
type: SpeciesReference

572363
stoichiometry: 8.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

591127
stoichiometry: 0.2556
species: 571112
type: SpeciesReference

591500
stoichiometry: 1.0
species: M D DASH ALANINE LBRACKET C RBRACKET
type: SpeciesReference

M CPDIM DASH 6112 LBRACKET E RBRACKET
is: CPDIM-6112
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: ethylsalicylate
type: Species

609992
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET E RBRACKET
type: SpeciesReference

575178
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

602382
stoichiometry: 1.0
species: M SO3 LBRACKET E RBRACKET
type: SpeciesReference

600632
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

583947
stoichiometry: 1.0
species: M DIACYLGLYCEROL LBRACKET C RBRACKET
type: SpeciesReference

592946
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

610738
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

611484
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

617802
stoichiometry: 1.0
species: M ASN DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

M C18 COLON 0 DASH ACP LBRACKET C RBRACKET
initial amount: NaN
is: STEAROYL-ACYL-CARRIER-PROTEIN
in compartment: 570138
has only substance units: false
constant: false
boundary condition: false
initial concentration: NaN
name: octadenoyl-acp
type: Species
is: ocdcaACP

609376
stoichiometry: 1.0
species: M PROPIONALDOXIME LBRACKET C RBRACKET
type: SpeciesReference

603248
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

610028
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET
type: SpeciesReference

614418
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

577032
stoichiometry: 1.0
species: M CPD DASH 659 LBRACKET C RBRACKET
type: SpeciesReference

M 4 DASH P DASH PANTOTHENATE LBRACKET C RBRACKET
initial concentration: NaN
in compartment: 570138
has only substance units: false
name: 4'-phosphopantothenate
constant: false
type: Species
is: 4ppan
initial amount: NaN
boundary condition: false
is: 4-P-PANTOTHENATE
is: C03492

581954
stoichiometry: 1.0
species: M SUC DASH COA LBRACKET C RBRACKET
type: SpeciesReference

R XMPXAN DASH RXN
is: NTD10
product: 603368
type: Reaction
fast: false
reversible: false
product: 603380
reactant: 603344
name: xmp nucleotidase
reactant: 603356
is: XMPXAN-RXN
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227

609619
product: 609643
reactant: 609631
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of 4-guanidinobutanoate [extraorganism;cytosol](passive)
type: Reaction

585472
stoichiometry: 2.0
species: M SUPER DASH OXIDE LBRACKET C RBRACKET
type: SpeciesReference

590272
stoichiometry: 1.0
species: M FE PLUS 2 LBRACKET E RBRACKET
type: SpeciesReference

589343
stoichiometry: 1.0
species: 571064
type: SpeciesReference

577226
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

595273
stoichiometry: 1.0
species: M ACETYL DASH GLU LBRACKET C RBRACKET
type: SpeciesReference

582702
stoichiometry: 1.0
species: M 2 DASH KETO DASH ISOVALERATE LBRACKET C RBRACKET
type: SpeciesReference

M DEMETHYLMENAQUINONE LBRACKET C RBRACKET
initial amount: NaN
boundary condition: false
name: demethylmenaquinone
initial concentration: NaN
is: DEMETHYLMENAQUINONE
constant: false
has only substance units: false
type: Species
is: C05818
in compartment: 570138
is: 2dmmq8

R C16 COLON 0 DASH 2ENOYLACP DASH REDUCTASE DASH RXN
is: EAR160x
notes: GENE_ASSOCIATION: ACIAD3116
name: 2enoyl-acp reductase (c16:0)
product: 603453
fast: false
reversible: false
type: Reaction
is: ENOYL-ACP-REDUCT-NADH-RXN
reactant: 603416
product: 603440
reactant: 603428

574998
stoichiometry: 1.0
species: M C14 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: SpeciesReference

617947
stoichiometry: 1.0
species: M DIAMINO DASH OH DASH PHOSPHORIBOSYLAMINO DASH PYR LBRACKET C RBRACKET
type: SpeciesReference

580054
stoichiometry: 1.0
species: M ADENOSINE LBRACKET C RBRACKET
type: SpeciesReference

582218
stoichiometry: 1.0
species: M GLUCONATE LBRACKET P RBRACKET
type: SpeciesReference

578344
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

570691
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-oxohexadec-7-enoyl-coa
type: Species

R C10 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
is: OHACYL-COA-DEHYDROG-RXN
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
type: Reaction
reactant: 603032
product: 603056
reactant: 603020
product: 603044
reversible: false
name: hydroxyacyl-coa dehydrogenase (c10:0)
is: HACD4i
fast: false

579945
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

590982
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

588730
stoichiometry: 1.0
species: M PHE LBRACKET C RBRACKET
type: SpeciesReference

M DATP LBRACKET C RBRACKET
name: datp
type: Species
constant: false
initial amount: NaN
is: datp
boundary condition: false
is: C00131
in compartment: 570138
is: DATP
has only substance units: false
initial concentration: NaN

596935
stoichiometry: 1.0
species: M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET P RBRACKET
type: SpeciesReference

576213
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

575745
stoichiometry: 1.0
species: M TMP LBRACKET C RBRACKET
type: SpeciesReference

601586
stoichiometry: 1.0
species: 570390
type: SpeciesReference

605078
stoichiometry: 1.0
species: M ILE LBRACKET C RBRACKET
type: SpeciesReference

589079
stoichiometry: 1.0
species: M QUINATE LBRACKET P RBRACKET
type: SpeciesReference

598417
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

583676
stoichiometry: 0.319
species: 570847
type: SpeciesReference

601077
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: SpeciesReference

574228
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

M C18 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
is: toctd2eACP
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans-octadec-2-enoyl-acp
type: Species

608229
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

R PSEUDOURIDYLATE DASH SYNTHASE DASH RXN
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: ACIAD0474 or ACIAD0715 or ACIAD2897 or ACIAD3307 or ACIAD0861 or ACIAD1189 or ACIAD1203 or ACIAD2377 or ACIAD2380 or ACIAD0442
fast: false
is: PSEUDOURIDYLATE-SYNTHASE-RXN
reactant: 600331
reactant: 600319
product: 600355
name: pseudouridylate synthase
product: 600343

571486
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R CITSYN DASH RXN
notes: GENE_ASSOCIATION: ACIAD2886
product: 588310
reversible: false
type: Reaction
reactant: 588274
is: CITSYN-RXN
product: 588298
reactant: 588262
reactant: 588286
name: citrate (si)-synthase
is: CS
fast: false

592198
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

580442
stoichiometry: 1.0
species: M OCTAPRENYL DASH METHYL DASH METHOXY DASH BENZQ LBRACKET C RBRACKET
type: SpeciesReference

R DIHYDROPICRED DASH RXN
reactant: 589704
reactant: 589716
name: dihydrodipicolinate reductase
type: Reaction
is: DHDPRy
is: DIHYDROPICRED-RXN
product: 589740
fast: false
reversible: false
notes: GENE_ASSOCIATION: ACIAD3619
product: 589728

618623
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

R GLYCERALDEHYDE DASH DEHYDRO DASH RXN
fast: false
reactant: 602611
type: Reaction
product: 602659
reversible: true
reactant: 602635
reactant: 602623
notes: GENE_ASSOCIATION: ACIAD2018 or ACIAD2542
is: GLYCERALDEHYDE-DEHYDRO-RXN
product: 602647
name: aldehyde dehydrogenase (nad+)

583604
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

593234
stoichiometry: 1.0
species: M 4 DASH HYDROXY DASH BENZYL DASH ALCOHOL LBRACKET C RBRACKET
type: SpeciesReference

604319
stoichiometry: 1.0
species: M C5 LBRACKET C RBRACKET
type: SpeciesReference

575685
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

R UROGENDECARBOX DASH RXN
reactant: 609003
is: UROGENDECARBOX-RXN
is: UPPDC1
reversible: false
product: 609015
name: uroporphyrinogen decarboxylase
fast: false
product: 609027
notes: GENE_ASSOCIATION: ACIAD2474
type: Reaction

R ASPDECARBOX DASH RXN
notes: GENE_ASSOCIATION: ACIAD2911
is: ASP1DC
name: aspartate 1-decarboxylase
is: ASPDECARBOX-RXN
reversible: false
fast: false
product: 593138
product: 593150
type: Reaction
reactant: 593126

614574
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

588034
stoichiometry: 1.0
species: M RIBULOSE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET
constant: false
is: C00021
is: ADENOSYL-HOMO-CYS
initial amount: NaN
type: Species
has only substance units: false
boundary condition: false
name: s-adenosyl-homocysteine
is: ahcys
in compartment: 570138
initial concentration: NaN

583531
reactant: 583543
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-glutamate
type: Reaction

599934
stoichiometry: 1.0
species: M DEOXYURIDINE LBRACKET C RBRACKET
type: SpeciesReference

575733
stoichiometry: 1.0
species: M TTP LBRACKET C RBRACKET
type: SpeciesReference

M 3 DASH HYDROXYPIMELOYL DASH COA LBRACKET C RBRACKET
name: 3-hydroxypimeloyl-coa
is: C06714
initial amount: NaN
has only substance units: false
is: 3-HYDROXYPIMELOYL-COA
in compartment: 570138
type: Species
initial concentration: NaN
constant: false
boundary condition: false

576310
stoichiometry: 1.0
species: M CPD DASH 173 LBRACKET C RBRACKET
type: SpeciesReference

592102
stoichiometry: 1.0
species: M DEOXYXYLULOSE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

607374
stoichiometry: 1.0
species: M PQQ LBRACKET P RBRACKET
type: SpeciesReference

593620
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M CPDIM DASH 6116 LBRACKET C RBRACKET
is: CPDIM-6116
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3,4-dihydroxyphenylpropionate
type: Species

609099
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

606834
stoichiometry: 1.0
species: M ACETOACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

581086
stoichiometry: 1.0
species: M BISOHMYR DASH GLUCOSAMINYL DASH 1P LBRACKET C RBRACKET
type: SpeciesReference

579356
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

586723
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

615728
product: 615776
product: 615764
reactant: 615752
reactant: 615740
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: acyl-acp hydrolase (c18:0)
type: Reaction

M CHARGED DASH THR DASH TRNAS LBRACKET C RBRACKET
name: charged threonine trna
in compartment: 570138
initial amount: NaN
initial concentration: NaN
boundary condition: false
is: thrtrna
type: Species
constant: false
has only substance units: false
is: C02992
is: CHARGED-THR-TRNAS

573423
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

R DTDPDEHYRHAMREDUCT DASH RXN
type: Reaction
reversible: true
reactant: 574590
product: 574626
name: dtdp-4-dehydrorhamnose reductase
fast: false
is: TDPDRR
is: DTDPDEHYRHAMREDUCT-RXN
reactant: 574602
product: 574614
notes: GENE_ASSOCIATION: ACIAD0078

M METHYLENE DASH THF LBRACKET C RBRACKET
is: C00143
initial concentration: NaN
type: Species
constant: false
has only substance units: false
in compartment: 570138
is: METHYLENE-THF
is: mlthf
name: 5,10-methylene-thf
initial amount: NaN
boundary condition: false

M C16 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: Species
in compartment: 570138
name: trans-hexadec-2-enoyl-coa
is: hdd2coa
initial concentration: NaN
boundary condition: false
has only substance units: false
initial amount: NaN
constant: false
is: C05272

617730
reactant: 617742
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 4-hydroxybenzylacetate
type: Reaction

574168
stoichiometry: 1.0
species: M METHYLENE DASH THF LBRACKET C RBRACKET
type: SpeciesReference

M PRO LBRACKET C RBRACKET
is: PRO
constant: false
initial amount: NaN
initial concentration: NaN
in compartment: 570138
type: Species
is: C00148
boundary condition: false
is: pro-L
name: l-proline
has only substance units: false

600933
stoichiometry: 1.0
species: M BUTANEDIOL LBRACKET E RBRACKET
type: SpeciesReference

601864
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

618368
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

618478
stoichiometry: 2.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

602539
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

M PSEUDOURIDINE DASH 5 DASH P LBRACKET C RBRACKET
boundary condition: false
initial concentration: NaN
type: Species
constant: false
name: pseudouridine 5'-phosphate
in compartment: 570138
has only substance units: false
initial amount: NaN
is: C01168
is: PSEUDOURIDINE-5-P

589115
product: 589163
product: 589151
product: 589139
reactant: 589127
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: peptidoglycan synthesis
type: Reaction

571546
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

580786
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

615392
stoichiometry: 1.0
species: M DGMP LBRACKET C RBRACKET
type: SpeciesReference

603525
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

R RXN DASH 7913
is: CYTK2
type: Reaction
product: 594539
fast: false
reversible: false
name: dcmp kinase
is: RXN-7913
reactant: 594503
notes: GENE_ASSOCIATION: ACIAD2348
reactant: 594515
product: 594527

M CHARGED DASH SER DASH TRNAS LBRACKET C RBRACKET
is: CHARGED-SER-TRNAS
name: charged serine trna
constant: false
type: Species
is: sertrna
in compartment: 570138
has only substance units: false
is: C02553
initial amount: NaN
initial concentration: NaN
boundary condition: false

606293
stoichiometry: 0.5
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

595756
stoichiometry: 1.0
species: M UMP LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH C14 COLON 0
fast: false
reversible: true
reactant: 616570
is: TRANS-RXNIM-5726
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
type: Reaction
product: 616607
name: transport of tetradecanoate [extraorganism;cytosol](secondary symport)
product: 616594
reactant: 616582

609473
stoichiometry: 1.0
species: M FRU1P LBRACKET C RBRACKET
type: SpeciesReference

591910
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

614717
stoichiometry: 1.0
species: M CPD DASH 3571 LBRACKET E RBRACKET
type: SpeciesReference

M CTP LBRACKET C RBRACKET
has only substance units: false
is: ctp
is: CTP
in compartment: 570138
name: ctp
boundary condition: false
constant: false
initial amount: NaN
is: C00063
type: Species
initial concentration: NaN

582569
stoichiometry: 1.0
species: M ARG LBRACKET E RBRACKET
type: SpeciesReference

582086
stoichiometry: 1.0
species: M UDP DASH N DASH ACETYLMURAMATE LBRACKET C RBRACKET
type: SpeciesReference

583027
stoichiometry: 1.0
species: M C16 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

M FE PLUS 2 LBRACKET E RBRACKET
in compartment: 570126
initial concentration: NaN
has only substance units: false
constant: false
type: Species
initial amount: NaN
boundary condition: false
is: FE+2
is: C00023
name: fe+2
is: fe2

589620
stoichiometry: 1.0
species: 570775
type: SpeciesReference

599886
stoichiometry: 1.0
species: M NA PLUS LBRACKET C RBRACKET
type: SpeciesReference

577334
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M FUM LBRACKET E RBRACKET
has only substance units: false
is: fum
constant: false
initial amount: NaN
in compartment: 570126
is: FUM
name: fumarate
is: C00122
initial concentration: NaN
type: Species
boundary condition: false

584773
stoichiometry: 1.37
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R FUMARYLACETOACETASE DASH RXN
is: FUMARYLACETOACETASE-RXN
name: fumarylacetoacetase
reversible: true
notes: GENE_ASSOCIATION: ACIAD1809
is: FUMAC
reactant: 601041
fast: false
reactant: 601029
type: Reaction
product: 601053
product: 601065

580846
reactant: 580858
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of hexanoate
type: Reaction

M 2 DASH 3 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET
boundary condition: false
constant: false
name: 2,3-dihydroxybenzoate
initial concentration: NaN
is: 2-3-DIHYDROXYBENZOATE
is: C00196
type: Species
initial amount: NaN
is: 23dhb
has only substance units: false
in compartment: 570138

578826
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M ISOCHORISMATE LBRACKET C RBRACKET
is: C00885
is: ichor
initial amount: NaN
in compartment: 570138
has only substance units: false
boundary condition: false
constant: false
type: Species
is: ISOCHORISMATE
initial concentration: NaN
name: isochorismate

588406
stoichiometry: 1.0
species: M CIT LBRACKET E RBRACKET
type: SpeciesReference

573375
stoichiometry: 1.0
species: M L DASH 1 DASH PHOSPHATIDYL DASH GLYCEROL DASH P LBRACKET C RBRACKET
type: SpeciesReference

586891
stoichiometry: 1.0
species: M PROPIONYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

590608
stoichiometry: 1.0
species: M 4 DASH HYDROXY DASH ETCETERA DASH HYDROXYPROPIONYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

607014
stoichiometry: 1.0
species: M BENZALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

579729
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

583830
stoichiometry: 1.0
species: M CONIFERYL DASH ALDEHYDE LBRACKET E RBRACKET
type: SpeciesReference

616426
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

592390
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

593126
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

578417
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

573531
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

M 2 DASH KETO DASH ISOVALERATE LBRACKET C RBRACKET
boundary condition: false
type: Species
in compartment: 570138
is: C00141
initial concentration: NaN
initial amount: NaN
name: 2-keto-isovalerate
is: 3mob
is: 2-KETO-ISOVALERATE
has only substance units: false
constant: false

609039
stoichiometry: 1.0
species: M S DASH LACTOYL DASH GLUTATHIONE LBRACKET C RBRACKET
type: SpeciesReference

593018
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

604428
stoichiometry: 1.0
species: M LEU LBRACKET C RBRACKET
type: SpeciesReference

588250
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

618514
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

573483
stoichiometry: 1.0
species: M CARDIOLIPIN LBRACKET C RBRACKET
type: SpeciesReference

598308
stoichiometry: 1.0
species: M C8 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

R ACETALD DASH DEHYDROG DASH RXN
product: 603248
notes: GENE_ASSOCIATION: ACIAD2018
fast: false
is: ACETALD-DEHYDROG-RXN
type: Reaction
reactant: 603224
reactant: 603200
reactant: 603212
name: acetaldehyde dehydrogenase (acetylating)
is: ACALD
product: 603236
reversible: true

592729
stoichiometry: 1.0
species: M PORPHOBILINOGEN LBRACKET C RBRACKET
type: SpeciesReference

R OROTPDECARB DASH RXN
reversible: false
product: 604343
name: orotidine-5'-phosphate decarboxylase
fast: false
product: 604355
is: OMPDC
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2341
is: OROTPDECARB-RXN
reactant: 604331

600704
stoichiometry: 1.0
species: M TTP LBRACKET C RBRACKET
type: SpeciesReference

M GTP LBRACKET C RBRACKET
initial concentration: NaN
has only substance units: false
type: Species
is: gtp
is: GTP
is: C00044
name: gtp
boundary condition: false
initial amount: NaN
constant: false
in compartment: 570138

595104
stoichiometry: 2.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET
type: SpeciesReference

606065
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

572014
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

589560
reactant: 589572
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of d-lactate
type: Reaction

581195
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

R 1 PERIOD 2 PERIOD 1 PERIOD 65 DASH RXN
fast: false
reactant: 616354
reactant: 616342
type: Reaction
name: salicylaldehyde dehydrogenase
is: 1.2.1.65-RXN
reactant: 616330
product: 616378
notes: GENE_ASSOCIATION: ACIAD1430 or ACIAD1725
product: 616366
reversible: true

616705
stoichiometry: 1.0
species: M PRO LBRACKET E RBRACKET
type: SpeciesReference

579139
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

579247
stoichiometry: 0.116
species: M L DASH 1 DASH PHOSPHATIDYL DASH GLYCEROL LBRACKET C RBRACKET
type: SpeciesReference

593777
stoichiometry: 1.0
species: M C5 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

R DIHYDRONEOPTERIN DASH MONO DASH P DASH DEPHOS DASH RXN
type: Reaction
is: DNMPPA
name: dihydroneopterin monophosphate dephosphorylase
reactant: 614626
product: 614665
product: 614652
notes: GENE_ASSOCIATION:
fast: false
is: DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN
reversible: false
reactant: 614639

R TRANS DASH RXN DASH ADENOSINE
type: Reaction
reactant: 574421
product: 574445
product: 574457
fast: false
is: ADNt2rpp
reactant: 574433
notes: GENE_ASSOCIATION: ACIAD2389
reversible: true
is: TRANS-RXN-108A
name: transport of adenosine [extraorganism;cytosol](secondary symport)

594948
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET
type: SpeciesReference

605186
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M QUINATE LBRACKET P RBRACKET
is: QUINATE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570114
name: quinate
type: Species

584485
stoichiometry: 1.0
species: 570414
type: SpeciesReference

613494
reactant: 613506
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of d-glucarate
type: Reaction

589415
stoichiometry: 1.0
species: M URIDINE LBRACKET C RBRACKET
type: SpeciesReference

597043
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

617224
stoichiometry: 1.0
species: M C4 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

583315
stoichiometry: 1.0
species: M MANNOSE DASH 6P LBRACKET C RBRACKET
type: SpeciesReference

M 5 DASH KETO DASH 4 DASH DEOXY DASH D DASH GLUCARATE LBRACKET C RBRACKET
initial amount: NaN
name: 5-keto-4-deoxy-d-glucarate
boundary condition: false
constant: false
in compartment: 570138
type: Species
is: C00679
has only substance units: false
is: 5-KETO-4-DEOXY-D-GLUCARATE
initial concentration: NaN
is: 5dh4dglc

614366
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

595647
reactant: 595659
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of sorbate
type: Reaction

R RXNIM DASH 6173
product: 600740
product: 600728
reactant: 600716
notes: GENE_ASSOCIATION: ACIAD1726
is: RXNIM-6173
fast: false
reversible: true
name: 4-hydroxyphenyl-beta-hydroxypropionyl-coa lyase
type: Reaction

591705
stoichiometry: 1.0
species: M MALONATE LBRACKET C RBRACKET
type: SpeciesReference

572795
stoichiometry: 1.0
species: M C6 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

608531
stoichiometry: 0.04
species: M CHARGED DASH ASN DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH TRP
reversible: true
name: transport of l-tryptophan [extraorganism;cytosol](secondary symport)
fast: false
reactant: 591343
reactant: 591331
product: 591367
is: TRANS-RXNIM-5920
notes: GENE_ASSOCIATION: ACIAD1343 or ACIAD2969
product: 591355
type: Reaction
is: TRPt2rpp

M TRP LBRACKET E RBRACKET
constant: false
type: Species
in compartment: 570126
boundary condition: false
name: l-tryptophan
is: C00078
is: TRP
is: trp-L
has only substance units: false
initial concentration: NaN
initial amount: NaN

M D DASH GLT LBRACKET C RBRACKET
constant: false
type: Species
boundary condition: false
initial concentration: NaN
has only substance units: false
is: glu-D
initial amount: NaN
is: C00217
name: d-glutamate
in compartment: 570138
is: D-GLT

571990
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

614639
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

590753
stoichiometry: 1.0
species: M CTP LBRACKET C RBRACKET
type: SpeciesReference

599826
stoichiometry: 1.0
species: M C12 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: SpeciesReference

M IMIDAZOLE DASH ACETOL DASH P LBRACKET C RBRACKET
is: C01267
initial concentration: NaN
initial amount: NaN
type: Species
name: imidazole acetol-phosphate
has only substance units: false
is: IMIDAZOLE-ACETOL-P
boundary condition: false
is: imacp
in compartment: 570138
constant: false

593801
stoichiometry: 1.0
species: M FARNESYL DASH PP LBRACKET C RBRACKET
type: SpeciesReference

618587
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

578718
stoichiometry: 1.0
species: M L DASH ARGININO DASH SUCCINATE LBRACKET C RBRACKET
type: SpeciesReference

M DIHYDROPTERIN DASH CH2OH DASH PP LBRACKET C RBRACKET
boundary condition: false
initial amount: NaN
type: Species
initial concentration: NaN
constant: false
name: 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate
in compartment: 570138
has only substance units: false
is: DIHYDROPTERIN-CH2OH-PP
is: 2ahhmd
is: C04807

580626
stoichiometry: 1.0
species: M TMP LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH ADIPATE
type: Reaction
name: transport of adipate [extraorganism;cytosol](secondary symport)
fast: false
product: 611230
reactant: 611218
reactant: 611206
notes: GENE_ASSOCIATION: ACIAD1694
is: TRANS-RXNIM-5909
product: 611242
reversible: true

599778
stoichiometry: 1.0
species: M GLY LBRACKET C RBRACKET
type: SpeciesReference

R DIAMINOPIMEPIM DASH RXN
product: 571316
reactant: 571304
notes: GENE_ASSOCIATION: ACIAD2659
is: DIAMINOPIMEPIM-RXN
is: DAPE
fast: false
reversible: true
name: diaminopimelate epimerase
type: Reaction

R MALIC DASH NAD DASH RXN
type: Reaction
is: MALIC-NAD-RXN
fast: false
name: malate dehydrogenase (oxaloacetate decarboxylating)
reversible: false
product: 583255
notes: GENE_ASSOCIATION: ACIAD0166
product: 583243
reactant: 583231
reactant: 583219
is: ME1
product: 583267

570174
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: phenyl sulfate
type: Species

609583
stoichiometry: 2.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

R METHYLENETHFREDUCT DASH RXN
reversible: true
name: 5,10-methylenetetrahydrofolate reductase (fadh)
is: MTHFR2
is: METHYLENETHFREDUCT-RXN
reactant: 574144
fast: false
notes: GENE_ASSOCIATION: ACIAD2283
product: 574168
type: Reaction
product: 574156
reactant: 574132

603814
stoichiometry: 1.0
species: M C14 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

582459
stoichiometry: 2.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

M CARBOXYPHENYLAMINO DASH DEOXYRIBULOSE DASH P LBRACKET C RBRACKET
is: C01302
type: Species
has only substance units: false
initial concentration: NaN
initial amount: NaN
boundary condition: false
is: 2cpr5p
name: 1-(o-carboxyphenylamino)-1'-deoxyribulose-5'-phosphate
constant: false
is: CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P
in compartment: 570138

617886
stoichiometry: 1.0
species: 570607
type: SpeciesReference

R 2 PERIOD 8 PERIOD 1 PERIOD 6 DASH RXN
reactant: 574818
reversible: true
notes: GENE_ASSOCIATION: ACIAD2045
reactant: 574830
product: 574854
name: biotin synthase
product: 574842
fast: false
is: 2.8.1.6-RXN
is: BTS4
type: Reaction

603308
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M D DASH 4 DASH HYDROXY DASH 2 DASH KETO DASH GLUTARATE LBRACKET C RBRACKET
is: D-4-HYDROXY-2-KETO-GLUTARATE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: d-4-hydroxy-2-keto-glutarate
type: Species

612640
stoichiometry: 2.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

575805
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: SpeciesReference

R DLACTDEHYDROGNAD DASH RXN
is: LDH D
type: Reaction
product: 580602
reactant: 580590
reversible: false
product: 580614
notes: GENE_ASSOCIATION: ACIAD0109
is: DLACTDEHYDROGNAD-RXN
fast: false
name: d-lactate dehydrogenase, nad
reactant: 580578

R TRANS DASH RXN DASH C18 COLON 1 LPAREN C9 RPAREN
type: Reaction
reactant: 610004
name: transport of cis-octadec-9-enoate [extraorganism;cytosol](secondary symport)
product: 610016
reversible: true
product: 610028
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
is: TRANS-RXNIM-5726
fast: false
reactant: 609992

601694
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

612592
stoichiometry: 1.0
species: M RED DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
type: SpeciesReference

R C18 COLON 0 DASH COATRANSFERASE DASH RXN
is: ACYLCOASYN-RXN
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
product: 590029
reactant: 589993
product: 590005
fast: false
name: acyl coa transferase (c18:0)
product: 590017
reversible: false
reactant: 589981
type: Reaction
is: FACOAL180t2pp
reactant: 589968

601972
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

M TYR LBRACKET E RBRACKET
name: l-tyrosine
is: TYR
boundary condition: false
is: tyr-L
constant: false
type: Species
has only substance units: false
is: C00082
in compartment: 570126
initial concentration: NaN
initial amount: NaN

596021
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH FORMAMIDO DASH CARBOXAMIDE LBRACKET C RBRACKET
type: SpeciesReference

M GDP LBRACKET C RBRACKET
is: C00035
boundary condition: false
initial concentration: NaN
in compartment: 570138
name: gdp
initial amount: NaN
type: Species
constant: false
has only substance units: false
is: GDP
is: gdp

588947
reactant: 588959
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 4-hydroxybenzyl alcohol
type: Reaction

602647
stoichiometry: 1.0
species: M GLYCERATE LBRACKET C RBRACKET
type: SpeciesReference

M CDP LBRACKET C RBRACKET
name: cdp
type: Species
has only substance units: false
is: C00112
initial amount: NaN
constant: false
is: CDP
is: cdp
in compartment: 570138
boundary condition: false
initial concentration: NaN

576105
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

581809
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

599550
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

608833
stoichiometry: 0.13
species: M ALA DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

577443
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R GLUTARATE DASH DASH COA DASH LIGASE DASH RXN
product: 586723
product: 586735
type: Reaction
reactant: 586699
product: 586747
fast: false
is: GLUTARATE--COA-LIGASE-RXN
name: glutarate--coa ligase
reversible: false
notes: GENE_ASSOCIATION: ACIAD1695 and ACIAD1696
reactant: 586711
reactant: 586687

M ADENYLOSUCC LBRACKET C RBRACKET
is: dcamp
has only substance units: false
is: C03794
initial concentration: NaN
initial amount: NaN
is: ADENYLOSUCC
boundary condition: false
in compartment: 570138
type: Species
name: adenylo-succinate
constant: false

M 6 DASH P DASH GLUCONATE LBRACKET C RBRACKET
boundary condition: false
is: 6-P-GLUCONATE
constant: false
in compartment: 570138
has only substance units: false
type: Species
is: C00345
name: 6-phospho-gluconate
initial amount: NaN
is: 6pgc
initial concentration: NaN

572255
stoichiometry: 1.0
species: M FMNH2 LBRACKET C RBRACKET
type: SpeciesReference

R 3 DASH DEHYDROQUINATE DASH DEHYDRATASE DASH CATABOLIC DASH RXN
product: 577515
product: 577503
reactant: 577491
notes: GENE_ASSOCIATION: ACIAD1713
is: 3-DEHYDROQUINATE-DEHYDRATASE-RXN
fast: false
reversible: true
name: 3-dehydroquinate dehydratase
type: Reaction

R C8 COLON 0 DASH COA DASH THIOLASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
fast: false
reactant: 594636
type: Reaction
product: 594660
product: 594672
reversible: false
reactant: 594648
is: THIOESTER-RXN
is: FACOAE80
name: acyl-coa thiolase (c8:0)

592463
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

612254
stoichiometry: 1.0
species: M CPD DASH 110 LBRACKET E RBRACKET
type: SpeciesReference

R GLYCOLALD DASH DEHYDROG DASH RXN
type: Reaction
product: 578188
fast: false
product: 578200
reactant: 578164
is: GLYCOLALD-DEHYDROG-RXN
is: GCALDD
notes: GENE_ASSOCIATION: ACIAD2018 or ACIAD2542
reversible: true
reactant: 578152
name: glycolaldehyde dehydrogenase
reactant: 578176

M DIHYDRONEOPTERIN DASH P3 LBRACKET C RBRACKET
is: C04895
in compartment: 570138
name: dihydroneopterin triphosphate
type: Species
constant: false
boundary condition: false
is: ahdt
initial concentration: NaN
initial amount: NaN
has only substance units: false
is: DIHYDRONEOPTERIN-P3

R RXN0 DASH 299
type: Reaction
name: taurine dioxygenase
fast: false
is: RXN0-299
notes: GENE_ASSOCIATION: ACIAD1592 or ACIAD1600
product: 580030
is: TAUDO
reactant: 579982
product: 580018
reactant: 579994
product: 580006
reversible: false
reactant: 579969
product: 580042

598019
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R ACETOLACTREDUCTOISOM DASH RXN
is: KARA1
is: ACETOLACTREDUCTOISOM-RXN
reactant: 578646
reactant: 578658
reversible: true
product: 578670
type: Reaction
fast: false
name: ketol-acid reductoisomerase
notes: GENE_ASSOCIATION: ACIAD3102
product: 578682

615944
stoichiometry: 1.0
species: M ADIPATE LBRACKET C RBRACKET
type: SpeciesReference

586952
stoichiometry: 0.149
species: M C18 COLON 1 LPAREN C9 RPAREN DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

590488
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN DASH COA LBRACKET C RBRACKET
type: SpeciesReference

610436
stoichiometry: 1.0
species: 570463
type: SpeciesReference

R TRANS DASH RXN DASH MAL
is: TRANS-RXN-121A
reversible: false
reactant: 588214
fast: false
product: 588250
is: MALt2 2pp
product: 588238
notes: GENE_ASSOCIATION: ACIAD0024
type: Reaction
name: transport of malate [extraorganism;cytosol](secondary symport) TDT family
reactant: 588226

M CPD DASH 377 LBRACKET C RBRACKET
initial concentration: NaN
type: Species
is: CPD-377
has only substance units: false
is: 2dhglcn
boundary condition: false
constant: false
name: 2-dehydro-d-gluconate
in compartment: 570138
initial amount: NaN
is: C00629

596358
stoichiometry: 4.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

600404
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

576189
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET
type: SpeciesReference

M UDP DASH GLACTOSE LBRACKET C RBRACKET
initial concentration: NaN
initial amount: NaN
name: udp-galactose
is: udpgal
type: Species
has only substance units: false
constant: false
is: UDP-GLACTOSE
boundary condition: false
is: C00052
in compartment: 570138

586002
stoichiometry: 2.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

M GLT DASH TRNAS LBRACKET C RBRACKET
name: glutamate trna
is: C01641
constant: false
type: Species
is: GLT-TRNAS
boundary condition: false
has only substance units: false
initial concentration: NaN
is: trnaglu
initial amount: NaN
in compartment: 570138

610942
stoichiometry: 0.032
species: 571160
type: SpeciesReference

M APS LBRACKET C RBRACKET
initial amount: NaN
constant: false
name: aps
initial concentration: NaN
is: aps
type: Species
is: C00224
in compartment: 570138
is: APS
boundary condition: false
has only substance units: false

R PHOSPHAGLYPSYN DASH RXN
type: Reaction
name: cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
product: 573363
fast: false
notes: GENE_ASSOCIATION: ACIAD0342
reactant: 573339
reversible: false
product: 573375
reactant: 573351
is: PHOSPHAGLYPSYN-RXN

586314
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

573855
stoichiometry: 1.0
species: M COUMARYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M SER LBRACKET C RBRACKET
is: SER
boundary condition: false
has only substance units: false
type: Species
is: C00065
initial amount: NaN
initial concentration: NaN
constant: false
is: ser-L
in compartment: 570138
name: l-serine

611134
stoichiometry: 1.0
species: M ARG LBRACKET C RBRACKET
type: SpeciesReference

584917
stoichiometry: 1.0
species: M UDP DASH ACETYLMURAMOYL DASH ALA LBRACKET C RBRACKET
type: SpeciesReference

580165
stoichiometry: 1.0
species: M UTP LBRACKET C RBRACKET
type: SpeciesReference

607964
stoichiometry: 1.0
species: M DIACETYL LBRACKET C RBRACKET
type: SpeciesReference

604909
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

579416
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET
type: SpeciesReference

610136
stoichiometry: 1.0
species: M C12 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

R MANNPGUANYLTRANGDP DASH RXN
reversible: false
name: mannose-1-phosphate guanylyltransferase (gdp)
is: MAN1PT2
is: MANNPGUANYLTRANGDP-RXN
product: 575420
reactant: 575407
product: 575432
notes: GENE_ASSOCIATION: ACIAD0086
fast: false
reactant: 575395
type: Reaction

574914
stoichiometry: 1.0
species: M CPD DASH 205 LBRACKET E RBRACKET
type: SpeciesReference

591019
stoichiometry: 1.0
species: M FE PLUS 2 LBRACKET E RBRACKET
type: SpeciesReference

M DIHYDROFOLATE LBRACKET C RBRACKET
name: 7,8-dihydrofolate
constant: false
is: dhf
type: Species
is: C00415
initial concentration: NaN
has only substance units: false
initial amount: NaN
boundary condition: false
in compartment: 570138
is: DIHYDROFOLATE

589981
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

R 1 PERIOD 2 PERIOD 1 PERIOD 9 DASH RXN
fast: false
is: GAPD
reactant: 616983
reversible: false
notes: GENE_ASSOCIATION: ACIAD0546
reactant: 616971
is: PGK
type: Reaction
name: glyceraldehyde-3-phosphate dehydrogenase (nadp+)
product: 617019
is: 1.2.1.9-RXN
product: 617007
reactant: 616995

587132
stoichiometry: 1.0
species: M PRO LBRACKET C RBRACKET
type: SpeciesReference

592318
stoichiometry: 1.0
species: 570186
type: SpeciesReference

582146
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

M GLC DASH D DASH LACTONE LBRACKET P RBRACKET
is: GLC-D-LACTONE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570114
name: glucono-delta-lactone
type: Species

M L DASH ARGININO DASH SUCCINATE LBRACKET C RBRACKET
boundary condition: false
is: L-ARGININO-SUCCINATE
is: C03406
has only substance units: false
initial amount: NaN
type: Species
is: argsuc
constant: false
initial concentration: NaN
in compartment: 570138
name: l-arginino-succinate

605330
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

586098
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

600343
stoichiometry: 1.0
species: M PSEUDOURIDINE DASH 5 DASH P LBRACKET C RBRACKET
type: SpeciesReference

605294
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET
name: protocatechuate
is: 3,4-DIHYDROXYBENZOATE
in compartment: 570138
boundary condition: false
has only substance units: false
constant: false
type: Species
initial concentration: NaN
is: C00230
initial amount: NaN

R RXN DASH 2881
name: formaldehyde thf binding
notes: GENE_ASSOCIATION: SPONT SPONTANEOUS: TRUE
reactant: 609800
type: Reaction
reactant: 609812
reversible: false
fast: false
is: RXN-2881
product: 609824
product: 609836

R GLUTAMINESYN DASH RXN
product: 573579
is: GLUTAMINESYN-RXN
reactant: 573543
reactant: 573555
is: GLNS
name: glutamate--ammonia ligase
reactant: 573531
notes: GENE_ASSOCIATION: ACIAD2458 or ACIAD2528
type: Reaction
fast: false
reversible: false
product: 573567
product: 573591

R URIDINE DASH NUCLEOSIDASE DASH RXN
fast: false
is: URIDINE-NUCLEOSIDASE-RXN
reactant: 587589
product: 587613
notes: GENE_ASSOCIATION: ACIAD2386
name: uridine nucleosidase
reactant: 587578
reversible: false
type: Reaction
product: 587601
is: URIH

R ADOMET DASH DMK DASH METHYLTRANSFER DASH RXN
reversible: false
type: Reaction
reactant: 579801
product: 579825
is: ADOMET-DMK-METHYLTRANSFER-RXN
notes: GENE_ASSOCIATION: ACIAD2118 or ACIAD0384 or ACIAD1391
product: 579813
is: AMMQLT8
name: s-adenosylmethione:2-demethylmenaquinol methyltransferase
fast: false
reactant: 579789

R GLUTAMIN DASH RXN
product: 603970
reactant: 603958
is: GLUN
product: 603982
name: glutaminase
reversible: false
is: GLUTAMIN-RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1040 or ACIAD2088
fast: false
reactant: 603946

R UMPKI DASH RXN
type: Reaction
reversible: true
product: 596285
is: UMPKI-RXN
product: 596273
is: UMPK
reactant: 596249
fast: false
notes: GENE_ASSOCIATION: ACIAD1372
name: ump kinase
reactant: 596261

609267
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

586218
stoichiometry: 1.0
species: M FUM LBRACKET E RBRACKET
type: SpeciesReference

601378
reactant: 601390
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of deoxyguanosine
type: Reaction

M C4 COLON 0 DASH ACP LBRACKET C RBRACKET
initial amount: NaN
in compartment: 570138
is: BUTYRYL-ACP
has only substance units: false
is: butACP
boundary condition: false
type: Species
constant: false
name: butanoyl-acp
is: C05745
initial concentration: NaN

577936
stoichiometry: 2.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

611593
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

R BUTYRYL DASH COA DASH DEHYDROGENASE DASH RXN
product: 586254
is: ACOAD1f
is: BUTYRYL-COA-DEHYDROGENASE-RXN
reactant: 586242
name: butyryl-coa dehydrogenase
fast: false
reversible: false
product: 586266
type: Reaction
reactant: 586230
notes: GENE_ASSOCIATION: ACIAD1412

596153
stoichiometry: 1.0
species: 570968
type: SpeciesReference

605102
stoichiometry: 1.0
species: M CHARGED DASH ILE DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

577118
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH NA DASH CPA1
type: Reaction
reversible: true
notes: GENE_ASSOCIATION: ACIAD2867
fast: false
is: NAt3pp
product: 589908
product: 589896
reactant: 589884
is: TRANS-RXN-101
name: transport of na+ [extraorganism;cytosol](secondary antiport)
reactant: 589872

571268
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

593342
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET P RBRACKET
constant: false
has only substance units: false
name: protocatechuate
initial concentration: NaN
is: 3,4-DIHYDROXYBENZOATE
initial amount: NaN
in compartment: 570114
type: Species
is: C00230
boundary condition: false

581665
stoichiometry: 1.0
species: M SIROHEME LBRACKET C RBRACKET
type: SpeciesReference

608337
stoichiometry: 0.05
species: M CHARGED DASH ILE DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

602431
stoichiometry: 1.0
species: M 2 DASH DEHYDROPANTOATE LBRACKET C RBRACKET
type: SpeciesReference

610088
stoichiometry: 1.0
species: M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET
type: SpeciesReference

600030
stoichiometry: 1.0
species: M HS LBRACKET C RBRACKET
type: SpeciesReference

601270
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET E RBRACKET
type: SpeciesReference

584012
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

585363
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET
type: SpeciesReference

609728
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXNIM DASH 5812 DASH BIS
reactant: 602756
notes: GENE_ASSOCIATION: ACIAD1417
is: TRANS-RXNIM-5812
name: transport of l-ornithine [extraorganism;cytosol](secondary antiport)
product: 602768
reversible: true
type: Reaction
reactant: 602744
fast: false
product: 602780

600788
stoichiometry: 1.0
species: M ACETYL DASH P LBRACKET C RBRACKET
type: SpeciesReference

M GLY DASH TRNAS LBRACKET C RBRACKET
is: C01642
boundary condition: false
in compartment: 570138
is: GLY-TRNAS
has only substance units: false
initial amount: NaN
type: Species
is: trnagly
constant: false
name: glycine trna
initial concentration: NaN

586542
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

612616
stoichiometry: 1.0
species: M DUDP LBRACKET C RBRACKET
type: SpeciesReference

592741
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

603344
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R DHSHIKIMATE DASH DEHYDRO DASH RXN
product: 573085
product: 573073
reactant: 573061
notes: GENE_ASSOCIATION: ACIAD1714
is: DHSHIKIMATE-DEHYDRO-RXN
fast: false
reversible: true
name: 3-dehydroshikimate dehydratase
type: Reaction

591091
stoichiometry: 0.574
species: 570775
type: SpeciesReference

593596
stoichiometry: 1.0
species: M GLT DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

R C14 COLON 1 LPAREN C5 RPAREN DASH COA DASH THIOLASE DASH RXN
type: Reaction
reactant: 618755
fast: false
product: 618779
name: acyl-coa thiolase (c14:1(c5))
product: 618791
is: THIOESTER-RXN
reactant: 618767
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
reversible: false

588118
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

M ASN LBRACKET E RBRACKET
in compartment: 570126
is: C00152
constant: false
is: ASN
is: asn-L
boundary condition: false
name: l-asparagine
has only substance units: false
initial amount: NaN
initial concentration: NaN
type: Species

602286
stoichiometry: 1.0
species: M C8 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

576683
stoichiometry: 1.0
species: M 4 DASH HYDROXY DASH BENZYL DASH ALCOHOL LBRACKET C RBRACKET
type: SpeciesReference

600115
stoichiometry: 1.0
species: 570751
type: SpeciesReference

574300
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

578910
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET
type: SpeciesReference

599129
stoichiometry: 1.0
species: M 2 DASH D DASH THREO DASH HYDROXY DASH 3 DASH CARBOXY DASH ISOCAPROATE LBRACKET C RBRACKET
type: SpeciesReference

576093
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

605753
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

587841
reactant: 587853
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of p-hydroxybenzoate
type: Reaction

R ACETYLORNDEACET DASH RXN
type: Reaction
reactant: 573675
is: ACODA
product: 573699
is: ACETYLORNDEACET-RXN
fast: false
name: acetylornithine deacetylase
product: 573687
notes: GENE_ASSOCIATION: ACIAD3489
reactant: 573663
reversible: false

R NITRITREDUCT DASH RXN
reactant: 582363
is: NTRIR2x
notes: GENE_ASSOCIATION: ACIAD1909 and ACIAD1910
reactant: 582375
fast: false
product: 582411
product: 582399
name: nitrite reductase (nad(p)h)
reversible: false
is: NITRITREDUCT-RXN
type: Reaction
product: 582387
reactant: 582350

595309
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M CIS DASH CIS DASH MUCONATE LBRACKET C RBRACKET
is: C02480
in compartment: 570138
constant: false
is: CIS-CIS-MUCONATE
name: cis,cis-muconate
initial concentration: NaN
boundary condition: false
has only substance units: false
type: Species
initial amount: NaN

M CPD DASH 6501 LBRACKET E RBRACKET
initial concentration: NaN
is: C15513
type: Species
in compartment: 570126
constant: false
initial amount: NaN
name: benzylacetate
is: CPD-6501
has only substance units: false
boundary condition: false

609195
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

581412
stoichiometry: 1.0
species: M SUBERATE LBRACKET C RBRACKET
type: SpeciesReference

602202
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

578994
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

573627
stoichiometry: 1.0
species: M CROTONYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

603670
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R THI DASH P DASH KIN DASH RXN
reactant: 614286
notes: GENE_ASSOCIATION: ACIAD3573
type: Reaction
reversible: true
product: 614325
is: THI-P-KIN-RXN
product: 614312
name: thiamine-phosphate kinase
is: TMPK
reactant: 614299
fast: false

577683
stoichiometry: 1.0
species: M 2 DASH OCTAPRENYL DASH 6 DASH METHOXYPHENOL LBRACKET C RBRACKET
type: SpeciesReference

M C16 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
is: C04633
is: 3hpalmACP
initial concentration: NaN
boundary condition: false
initial amount: NaN
in compartment: 570138
has only substance units: false
constant: false
name: 3-hydroxyhexadecanoyl-acp
type: Species

583363
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

617211
stoichiometry: 1.0
species: M OROTATE LBRACKET C RBRACKET
type: SpeciesReference

575226
reactant: 575238
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: unbalance flux of h+
type: Reaction

582242
stoichiometry: 1.0
species: M GLUCONATE LBRACKET C RBRACKET
type: SpeciesReference

M SULFATE LBRACKET C RBRACKET
initial concentration: NaN
in compartment: 570138
is: so4
is: C00059
boundary condition: false
has only substance units: false
is: SULFATE
initial amount: NaN
type: Species
constant: false
name: so42-

584413
stoichiometry: 1.0
species: M TYR LBRACKET C RBRACKET
type: SpeciesReference

M CHOLINE LBRACKET C RBRACKET
is: C00114
is: chol
initial concentration: NaN
boundary condition: false
in compartment: 570138
initial amount: NaN
name: choline
has only substance units: false
constant: false
type: Species
is: CHOLINE

579657
stoichiometry: 1.0
species: M GLN LBRACKET E RBRACKET
type: SpeciesReference

611677
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

608085
stoichiometry: 1.0
species: M UDP DASH N DASH ACETYL DASH D DASH GLUCOSAMINE LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH 1 DASH BIS
product: 587565
reactant: 587553
notes: GENE_ASSOCIATION: ACIAD1800 or ACIAD3593
is: TRANS-RXN-1
fast: false
reversible: true
name: transport of no2- [cytosol;extraorganism](passive)
type: Reaction

604812
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET E RBRACKET
type: SpeciesReference

605957
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

R PHOSACETYLTRANS DASH RXN
reversible: true
reactant: 600776
product: 600812
reactant: 600788
fast: false
is: PTAr
notes: GENE_ASSOCIATION: ACIAD2287 or ACIAD0540
is: PHOSACETYLTRANS-RXN
type: Reaction
name: phosphate acetyltransferase
product: 600800

M FRUCTOSE DASH 6P LBRACKET C RBRACKET
is: f6p
is: FRUCTOSE-6P
is: C00085
in compartment: 570138
name: fructose-6-phosphate
has only substance units: false
type: Species
initial amount: NaN
initial concentration: NaN
constant: false
boundary condition: false

571004
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: C16:0-ALDEHYDE
type: Species

R GLYCEROL DASH 3 DASH P DASH ACYLTRANSFER DASH TAG DASH RXN
reactant: 587336
notes: GENE_ASSOCIATION: ACIAD3232
reactant: 587348
product: 587360
type: Reaction
product: 587373
name: glycerol-3-phosphate acyltransferase
reversible: false
fast: false
is: GLYCEROL-3-P-ACYLTRANSFER-RXN

613458
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

572050
stoichiometry: 1.0
species: M 3 DASH KETOBUTYRATE LBRACKET C RBRACKET
type: SpeciesReference

594600
stoichiometry: 1.0
species: M 6 DASH CARBOXYHEX DASH 2 DASH ENOYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M PROPANENITRILE LBRACKET C RBRACKET
is: CPDIM-6120
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: propane nitrile
type: Species

591211
stoichiometry: 1.0
species: M 7 COMMA 8 DASH DIHYDROPTEROATE LBRACKET C RBRACKET
type: SpeciesReference

M 2 DASH D DASH THREO DASH HYDROXY DASH 3 DASH CARBOXY DASH ISOCAPROATE LBRACKET C RBRACKET
constant: false
name: 2-d-threo-hydroxy-3-carboxy-isocaproate
is: 3c2hmp
initial amount: NaN
boundary condition: false
in compartment: 570138
has only substance units: false
is: 2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE
type: Species
is: C04411
initial concentration: NaN

R FUMHYDR DASH RXN
reversible: true
product: 603284
reactant: 603260
type: Reaction
fast: false
is: FUM
notes: GENE_ASSOCIATION: ACIAD1890 or ACIAD0538
name: fumarate hydratase
is: FUMHYDR-RXN
reactant: 603272

M PHENOL LBRACKET C RBRACKET
has only substance units: false
name: phenol
constant: false
initial concentration: NaN
boundary condition: false
in compartment: 570138
initial amount: NaN
type: Species
is: C15584
is: PHENOL

R ADENOSINE DASH NUCLEOSIDASE DASH RXN
is: ADNUC
notes: GENE_ASSOCIATION: ACIAD2386
fast: false
reactant: 604006
type: Reaction
is: ADENOSINE-NUCLEOSIDASE-RXN
reactant: 603994
product: 604018
product: 604030
name: adenosine nucleosidase
reversible: false

M C14 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
constant: false
name: 3-hydroxytetradecanoyl-coa
is: C05260
initial amount: NaN
is: 3htdcoa
boundary condition: false
in compartment: 570138

R 1 PERIOD 1 PERIOD 1 PERIOD 259 DASH RXN
reversible: false
product: 594720
type: Reaction
reactant: 594696
product: 594708
notes: GENE_ASSOCIATION: ACIAD1690
is: 1.1.1.259-RXN
fast: false
reactant: 594684
name: 3-hydroxypimeloyl-coa dehydrogenase

R WAX DASH ESTER DASH SYNTHASE DASH RXN
is: 2.3.1.75-RXN
reactant: 605583
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: ACIAD0832
product: 605595
reactant: 605571
name: wax ester synthase
product: 605607
fast: false

616522
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

594466
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

608592
stoichiometry: 0.2
species: M GLY DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

599334
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

603886
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

617067
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

R GAPOXNPHOSPHN DASH RXN
name: glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)
type: Reaction
fast: false
reactant: 602178
reversible: true
product: 602214
is: GAPD
reactant: 602166
notes: GENE_ASSOCIATION: ACIAD2565
is: GAPOXNPHOSPHN-RXN
product: 602202
reactant: 602190

614149
stoichiometry: 1.0
species: M D DASH ERYTHRO DASH IMIDAZOLE DASH GLYCEROL DASH P LBRACKET C RBRACKET
type: SpeciesReference

576575
stoichiometry: 1.0
species: M PQQ LBRACKET P RBRACKET
type: SpeciesReference

R ENOYL DASH COA DASH DELTA DASH ISOM DASH RXN
product: 575973
reactant: 575961
notes: GENE_ASSOCIATION: ACIAD0335
is: ENOYL-COA-DELTA-ISOM-RXN
is: HDCOAI
fast: false
reversible: true
name: dodecenoyl-coa delta-isomerase
type: Reaction

R SUCCINYLDIAMINOPIMTRANS DASH RXN
product: 584461
notes: GENE_ASSOCIATION: ACIAD1231 or ACIAD1284
reactant: 584437
fast: false
product: 584449
reactant: 584425
name: succinyldiaminopimelate aminotransferase
is: SDPTA
reversible: true
type: Reaction
is: SUCCINYLDIAMINOPIMTRANS-RXN

R ADENYLYLSULFATE DASH REDUCTASE DASH RXN
name: adenylylsulfate reductase
product: 602334
product: 602346
is: ADENYLYLSULFATE-REDUCTASE-RXN
reactant: 602298
fast: false
reversible: false
product: 602322
reactant: 602310
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0833

616138
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

578634
stoichiometry: 1.0
species: M FERULOATE LBRACKET C RBRACKET
type: SpeciesReference

601126
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

585121
stoichiometry: 1.0
species: 570547
type: SpeciesReference

M 5 DASH P DASH RIBOSYL DASH N DASH FORMYLGLYCINEAMIDE LBRACKET C RBRACKET
has only substance units: false
initial amount: NaN
type: Species
is: 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE
in compartment: 570138
initial concentration: NaN
name: 5'-phosphoribosyl-n-formylglycineamide
is: C04376
constant: false
is: fgam
boundary condition: false

588226
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

611833
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

604223
stoichiometry: 1.0
species: 570607
type: SpeciesReference

R CHLOROGENATE DASH HYDROLASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD1720
type: Reaction
product: 589067
product: 589079
fast: false
reactant: 589055
name: chlorogenate hydrolase
reversible: true
is: CHLOROGENATE-HYDROLASE-RXN
reactant: 589043

597816
stoichiometry: 1.0
species: 570282
type: SpeciesReference

613628
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

598380
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

R RXN0 DASH 366
name: guanosine hydrolase
notes: GENE_ASSOCIATION: ACIAD2386
reactant: 607832
product: 607868
type: Reaction
is: RXN0-366
reversible: false
reactant: 607844
fast: false
product: 607856

588586
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R C5 COLON 0 DASH COATRANSFERASE DASH RXN
reactant: 595044
name: acyl coa transferase (c5:0)
fast: false
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
reactant: 595020
product: 595080
is: ACYLCOASYN-RXN
reactant: 595032
reversible: false
product: 595056
product: 595068
type: Reaction

597139
stoichiometry: 1.0
species: M CPD DASH 1828 LBRACKET C RBRACKET
type: SpeciesReference

583483
stoichiometry: 1.0
species: M L DASH ASPARTATE DASH SEMIALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

579440
stoichiometry: 1.0
species: M 6 DASH CARBOXYHEXANOYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

603068
stoichiometry: 1.0
species: M 5 DASH PHOSPHORIBOSYL DASH 5 DASH AMINOIMIDAZOLE LBRACKET C RBRACKET
type: SpeciesReference

597284
stoichiometry: 1.0
species: M G3P LBRACKET C RBRACKET
type: SpeciesReference

584221
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

599970
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: SpeciesReference

596779
stoichiometry: 1.0
species: M INDOLE DASH 3 DASH GLYCEROL DASH P LBRACKET C RBRACKET
type: SpeciesReference

584965
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

R C18 COLON 0 DASH COA DASH DEHYDROGENASE DASH RXN
type: Reaction
reversible: false
reactant: 581123
reactant: 581110
product: 581147
is: ACYLCOADEHYDROG-RXN
name: acyl-coa dehydrogenase (c18:0)
is: ACOAD8f
product: 581135
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566
fast: false

584173
stoichiometry: 1.0
species: M CAFFEATE LBRACKET P RBRACKET
type: SpeciesReference

R SUCCDIAMINOPIMDESUCC DASH RXN
fast: false
reversible: true
reactant: 594358
notes: GENE_ASSOCIATION: ACIAD0791
product: 594382
reactant: 594370
type: Reaction
name: succinyl-diaminopimelate desuccinylase
is: SDPDS
product: 594394
is: SUCCDIAMINOPIMDESUCC-RXN

613567
stoichiometry: 1.0
species: M D DASH LACTATE LBRACKET E RBRACKET
type: SpeciesReference

582593
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

585821
stoichiometry: 1.0
species: M DEPHOSPHO DASH COA LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH DEOXYGUANOSINE
name: transport of deoxyguanosine [extraorganism;cytosol](secondary symport)
notes: GENE_ASSOCIATION: ACIAD2389
is: RXNIM-6215
reversible: false
fast: false
product: 602057
type: Reaction
reactant: 602021
reactant: 602033
is: DGSNt2pp
product: 602045

R PEPCARBOX DASH RXN
name: phosphoenolpyruvate carboxylase
fast: false
reversible: false
reactant: 613001
product: 613025
product: 613037
reactant: 613013
is: PEPCARBOX-RXN
notes: GENE_ASSOCIATION: ACIAD3627
is: PPC
reactant: 612989
type: Reaction

607688
stoichiometry: 1.0
species: M C6 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

574638
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

573327
stoichiometry: 1.0
species: M LIPID DASH IV DASH A LBRACKET C RBRACKET
type: SpeciesReference

582666
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

605825
stoichiometry: 1.0
species: M CHARGED DASH PRO DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

570583
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: LPS_W
type: Species

607748
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

598501
stoichiometry: 1.0
species: M THREO DASH D LPAREN S RPAREN DASH ISO DASH CITRATE LBRACKET C RBRACKET
type: SpeciesReference

585326
stoichiometry: 1.0
species: M NA PLUS LBRACKET C RBRACKET
type: SpeciesReference

R FGAMSYN DASH RXN
type: Reaction
product: 594140
notes: GENE_ASSOCIATION: ACIAD2612
product: 594152
reactant: 594104
is: FGAMSYN-RXN
reactant: 594092
name: phosphoribosylformylglycinamidine synthase
reversible: false
reactant: 594080
product: 594128
is: PRFGS
fast: false
reactant: 594068
product: 594116

M ATP LBRACKET C RBRACKET
type: Species
constant: false
boundary condition: false
is: C00002
name: atp
is: atp
initial concentration: NaN
is: ATP
in compartment: 570138
has only substance units: false
initial amount: NaN

571858
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET
type: SpeciesReference

594527
stoichiometry: 1.0
species: M DCDP LBRACKET C RBRACKET
type: SpeciesReference

601767
stoichiometry: 1.0
species: M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET
type: SpeciesReference

M OCTAPRENYL DASH METHYL DASH METHOXY DASH BENZQ LBRACKET C RBRACKET
name: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone
type: Species
initial concentration: NaN
has only substance units: false
is: C05814
is: OCTAPRENYL-METHYL-METHOXY-BENZQ
initial amount: NaN
is: 2ommb
boundary condition: false
in compartment: 570138
constant: false

615500
stoichiometry: 1.0
species: M CMP DASH KDO LBRACKET C RBRACKET
type: SpeciesReference

587565
stoichiometry: 1.0
species: M NITRITE LBRACKET E RBRACKET
type: SpeciesReference

618140
stoichiometry: 1.0
species: M C16 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

M L DASH CYSTATHIONINE LBRACKET C RBRACKET
in compartment: 570138
boundary condition: false
is: cyst-L
is: L-CYSTATHIONINE
constant: false
is: C00542
initial amount: NaN
has only substance units: false
initial concentration: NaN
type: Species
name: cystathionine

574782
product: 574806
reactant: 574794
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of l-glutamine [extraorganism;cytosol](passive)
type: Reaction

614299
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

604933
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

607928
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

M FUM LBRACKET C RBRACKET
has only substance units: false
initial concentration: NaN
boundary condition: false
name: fumarate
is: C00122
initial amount: NaN
in compartment: 570138
is: fum
is: FUM
type: Species
constant: false

615764
stoichiometry: 1.0
species: M C18 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

611521
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

616959
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

617622
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

577828
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET
is: OLEATE-CPD
has only substance units: false
initial concentration: NaN
constant: false
is: C00712
type: Species
in compartment: 570138
boundary condition: false
name: cis-octadec-9-enoate
initial amount: NaN

615224
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

606774
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

570931
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: POLYSACCH_FREE_W
type: Species

R BRANCHED DASH CHAINAMINOTRANSFERVAL DASH RXN
fast: false
reactant: 582690
product: 582714
notes: GENE_ASSOCIATION: ACIAD0597
type: Reaction
product: 582726
is: VALTA
name: valine aminotransferase
reversible: true
reactant: 582702
is: BRANCHED-CHAINAMINOTRANSFERVAL-RXN

597894
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

579392
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

583507
stoichiometry: 1.0
species: M HOMO DASH SER LBRACKET C RBRACKET
type: SpeciesReference

606618
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

M ETHANOL DASH AMINE LBRACKET C RBRACKET
boundary condition: false
constant: false
is: etha
initial concentration: NaN
initial amount: NaN
name: ethanol-amine
in compartment: 570138
is: C00189
is: ETHANOL-AMINE
has only substance units: false
type: Species

R PHOSPHASERDECARB DASH RXN
product: 603525
product: 603513
reactant: 603501
notes: GENE_ASSOCIATION: ACIAD3560
is: PHOSPHASERDECARB-RXN
fast: false
reversible: false
name: phosphatidylserine decarboxylase
type: Reaction

606005
stoichiometry: 1.0
species: M WATER LBRACKET E RBRACKET
type: SpeciesReference

581135
stoichiometry: 1.0
species: M C18 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: SpeciesReference

M INDOLE DASH 3 DASH GLYCEROL DASH P LBRACKET C RBRACKET
is: 3ig3p
name: indole-3-glycerol-phosphate
has only substance units: false
constant: false
is: C03506
in compartment: 570138
boundary condition: false
type: Species
initial concentration: NaN
is: INDOLE-3-GLYCEROL-P
initial amount: NaN

M NA PLUS LBRACKET E RBRACKET
boundary condition: false
has only substance units: false
name: na+
initial amount: NaN
is: NA+
is: na1
in compartment: 570126
type: Species
initial concentration: NaN
is: C01330
constant: false

571630
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

580930
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

604030
stoichiometry: 1.0
species: M RIBOSE LBRACKET C RBRACKET
type: SpeciesReference

613254
stoichiometry: 1.0
species: M C16 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: SpeciesReference

586929
stoichiometry: 0.052
species: 570559
type: SpeciesReference

R C18 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
product: 571966
type: Reaction
product: 571954
reactant: 571942
name: 3oxoacyl-acp reductase (c18:0)
notes: GENE_ASSOCIATION: ACIAD0871
fast: false
is: 3OAR180
reactant: 571930
is: 3-OXOACYL-ACP-REDUCT-RXN
reversible: false

587625
stoichiometry: 1.0
species: M CPD DASH 188 LBRACKET C RBRACKET
type: SpeciesReference

598236
stoichiometry: 1.0
species: M SER LBRACKET C RBRACKET
type: SpeciesReference

575781
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

602876
stoichiometry: 1.0
species: M SUCC DASH S DASH ALD LBRACKET C RBRACKET
type: SpeciesReference

588718
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

585302
stoichiometry: 1.0
species: M MALONATE LBRACKET E RBRACKET
type: SpeciesReference

M CPD DASH 659 LBRACKET C RBRACKET
is: CPD-659
constant: false
boundary condition: false
initial amount: NaN
is: C00826
has only substance units: false
in compartment: 570138
type: Species
name: l-arogenate
initial concentration: NaN

612363
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

616851
stoichiometry: 1.0
species: M ETHANOL DASH AMINE LBRACKET E RBRACKET
type: SpeciesReference

599538
stoichiometry: 1.0
species: M CYTOSINE LBRACKET E RBRACKET
type: SpeciesReference

615656
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

578561
stoichiometry: 1.0
species: M 2 DASH DEHYDROPANTOATE LBRACKET C RBRACKET
type: SpeciesReference

574397
stoichiometry: 1.0
species: M ERYTHROSE DASH 4P LBRACKET C RBRACKET
type: SpeciesReference

R HISTALDEHYD DASH RXN
reactant: 599093
is: HISTALDEHYD-RXN
type: Reaction
product: 599105
is: HISTD
reactant: 599081
reactant: 599069
reversible: false
product: 599117
fast: false
notes: GENE_ASSOCIATION: ACIAD0663
name: histidinol dehydrogenase

585689
stoichiometry: 1.0
species: M C6 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

571966
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

602720
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

583592
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

579597
stoichiometry: 1.0
species: M C12 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

607796
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

577250
stoichiometry: 1.0
species: M RIBOSE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

606113
stoichiometry: 1.0
species: M GLY LBRACKET C RBRACKET
type: SpeciesReference

595985
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

613737
stoichiometry: 1.0
species: M 6 DASH CARBOXYHEXANOYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

570475
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ACYL-SN-GLYCEROL-3P_PL
type: Species

R 3 DASH OXOADIPATE DASH ENOL DASH LACTONASE DASH RXN
product: 595865
reactant: 595853
reactant: 595841
notes: GENE_ASSOCIATION: ACIAD1708 or ACIAD1451
is: 3-OXOADIPATE-ENOL-LACTONASE-RXN
fast: false
reversible: true
name: 3-oxoadipate enol-lactonase
type: Reaction

573145
stoichiometry: 2.0
species: M 2 DASH OCTAPRENYLPHENOL LBRACKET C RBRACKET
type: SpeciesReference

606438
stoichiometry: 1.0
species: M MET LBRACKET E RBRACKET
type: SpeciesReference

611749
stoichiometry: 1.0
species: M DEOXYXYLULOSE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

603778
stoichiometry: 1.0
species: M 3 DASH KETO DASH ADIPYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

601791
stoichiometry: 1.0
species: M CHLOROGENATE LBRACKET E RBRACKET
type: SpeciesReference

572904
stoichiometry: 1.0
species: M CPD DASH 77 LBRACKET C RBRACKET
type: SpeciesReference

601610
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

573291
stoichiometry: 1.0
species: M BISOHMYR DASH GLC LBRACKET C RBRACKET
type: SpeciesReference

612194
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

M S DASH ADENOSYL DASH 4 DASH METHYLTHIO DASH 2 DASH OXOBUTANOATE LBRACKET C RBRACKET
is: amob
type: Species
boundary condition: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: s-adenosyl-4-methylthio-2-oxobutanoate
constant: false
is: S-ADENOSYL-4-METHYLTHIO-2-OXOBUTANOATE
has only substance units: false
is: C04425

573903
stoichiometry: 1.0
species: M ASN LBRACKET C RBRACKET
type: SpeciesReference

581207
stoichiometry: 1.0
species: 570294
type: SpeciesReference

598658
stoichiometry: 1.0
species: M C14 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

617984
stoichiometry: 1.0
species: M AMINO DASH RIBOSYLAMINO DASH 1H DASH 3H DASH PYR DASH DIONE DASH P LBRACKET C RBRACKET
type: SpeciesReference

618032
stoichiometry: 1.0
species: M 4 DASH AMINO DASH 4 DASH DEOXYCHORISMATE LBRACKET C RBRACKET
type: SpeciesReference

577008
stoichiometry: 2.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

587793
stoichiometry: 1.0
species: M CMP DASH KDO LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH FE DASH NRAMP
fast: false
product: 591043
product: 591055
is: RXN0-2421
reactant: 591031
is: FE2t2pp
reversible: false
name: transport of fe+2 [extraorganism;cytosol](secondary symport)
type: Reaction
reactant: 591019
notes: GENE_ASSOCIATION: ACIAD2521

585978
stoichiometry: 2.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

570378
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-hexadec-7-enol
type: Species

R RXN0 DASH 363
product: 596550
notes: GENE_ASSOCIATION: ACIAD2386
product: 596563
name: xanthosine hydrolase
is: XTSNH
reactant: 596538
reactant: 596526
type: Reaction
fast: false
reversible: false
is: RXN0-363

612544
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R 1 PERIOD 1 PERIOD 1 PERIOD 215 DASH RXN
reactant: 594900
reversible: true
notes: GENE_ASSOCIATION: ACIAD1327
fast: false
type: Reaction
is: 2DGLCNRy
is: 1.1.1.215-RXN
name: gluconate 2-dehydrogenase
product: 594924
reactant: 594912
product: 594936

575709
stoichiometry: 1.0
species: M 3 DASH P DASH SERINE LBRACKET C RBRACKET
type: SpeciesReference

611038
stoichiometry: 0.021
species: 570931
type: SpeciesReference

R ALKANE DASH 1 DASH MONOOXYGENASE DASH RXN
name: octane-1 monooxygenase
is: ALKANE-1-MONOOXYGENASE-RXN
fast: false
reactant: 592450
reactant: 592438
notes: GENE_ASSOCIATION: ACIAD1411 and ACIAD1065
is: |RUBREDOXIN--NAD(+)-REDUCTASE-RXN|
type: Reaction
product: 592475
reversible: false
product: 592487
reactant: 592426
product: 592463

617139
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

572315
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

613676
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

591572
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

598597
stoichiometry: 1.0
species: M 1 DASH 2 DASH CIS DASH DI DASH OH DASH BENZOATE LBRACKET C RBRACKET
type: SpeciesReference

M COUMARATE LBRACKET E RBRACKET
constant: false
initial concentration: NaN
type: Species
in compartment: 570126
initial amount: NaN
name: 4-coumarate
has only substance units: false
is: C00811
is: COUMARATE
boundary condition: false

608749
stoichiometry: 0.02
species: M PHE DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

M CAFFEATE LBRACKET C RBRACKET
initial amount: NaN
type: Species
constant: false
initial concentration: NaN
is: CAFFEATE
name: caffeate
in compartment: 570138
is: C01481
boundary condition: false
has only substance units: false

604186
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M CHARGED DASH PRO DASH TRNAS LBRACKET C RBRACKET
type: Species
boundary condition: false
has only substance units: false
constant: false
initial concentration: NaN
in compartment: 570138
is: protrna
name: charged proline trna
initial amount: NaN
is: CHARGED-PRO-TRNAS
is: C02702

607856
stoichiometry: 1.0
species: M GUANINE LBRACKET C RBRACKET
type: SpeciesReference

584521
reactant: 584533
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of lactate
type: Reaction

618863
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

583255
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

R PQQ DASH OXID DASH RXN
product: 607374
reactant: 607362
notes: GENE_ASSOCIATION:
is: GLCDpp
fast: false
reversible: false
name: pyrroloquinoline-quinone oxidation
type: Reaction

605535
stoichiometry: 1.0
species: M HOMO DASH CYS LBRACKET C RBRACKET
type: SpeciesReference

593294
stoichiometry: 1.0
species: M C6 COLON 2 LPAREN C2 COMMA C4 RPAREN LBRACKET E RBRACKET
type: SpeciesReference

590669
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

590053
stoichiometry: 1.0
species: M TOLUENE LBRACKET E RBRACKET
type: SpeciesReference

591151
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

R MALATE DASH DEHYDROGENASE DASH LPAREN ACCEPTOR RPAREN DASH RXN
is: |MALATE-DEHYDROGENASE-(ACCEPTOR)-RXN|
type: Reaction
is: MDH2
product: 603008
reactant: 602984
reversible: false
product: 602996
notes: GENE_ASSOCIATION: ACIAD1007
reactant: 602972
name: malate dehydrogenase (acceptor)
fast: false

590113
stoichiometry: 1.0
species: M C8 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: SpeciesReference

608145
stoichiometry: 1.0
species: M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET C RBRACKET
type: SpeciesReference

590801
reactant: 590813
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of co2
type: Reaction

M SARCOSINE LBRACKET C RBRACKET
name: sarcosine
boundary condition: false
in compartment: 570138
constant: false
is: C00213
initial concentration: NaN
is: SARCOSINE
initial amount: NaN
has only substance units: false
type: Species
is: sarcs

M HCO3 LBRACKET C RBRACKET
is: HCO3
type: Species
boundary condition: false
constant: false
initial concentration: NaN
initial amount: NaN
is: hco3
is: C00288
has only substance units: false
in compartment: 570138
name: hco3-

R TRANS DASH RXN DASH PI
type: Reaction
product: 604788
product: 604800
is: TRANS-RXN-114
reversible: false
reactant: 604764
name: transport of phosphate [extraorganism;cytosol](secondary symport)
fast: false
notes: GENE_ASSOCIATION: ACIAD3641
reactant: 604776
is: PIt2rpp

597790
stoichiometry: 1.0
species: M PANTETHEINE DASH P LBRACKET C RBRACKET
type: SpeciesReference

573049
stoichiometry: 1.0
species: M ACETYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

M CARDIOLIPIN LBRACKET C RBRACKET
is: C05980
initial concentration: NaN
type: Species
is: CARDIOLIPIN
initial amount: NaN
in compartment: 570138
boundary condition: false
is: clpn140
name: cardiolipin
has only substance units: false
constant: false

R TRANS DASH RXNIM DASH 5803
reactant: 600969
notes: GENE_ASSOCIATION: ACIAD1440 or ACIAD1982
product: 600981
reversible: false
reactant: 600957
product: 600993
type: Reaction
fast: false
is: TRANS-RXNIM-5803
name: transport of benzoate [periplasm;cytosol](secondary symport) irreversible

604440
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

584377
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

598152
stoichiometry: 1.0
species: M C8 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: SpeciesReference

615872
stoichiometry: 1.0
species: M SUC LBRACKET E RBRACKET
type: SpeciesReference

M CHARGED DASH MET DASH TRNAS LBRACKET C RBRACKET
type: Species
is: mettrna
is: C02430
name: charged methionine trna
has only substance units: false
is: CHARGED-MET-TRNAS
boundary condition: false
initial amount: NaN
constant: false
initial concentration: NaN
in compartment: 570138

613025
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

588190
reactant: 588202
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 2,3-butanediol
type: Reaction

613145
stoichiometry: 0.06
species: M C18 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

R BENZALDEHYDE DASH DEHYDROGENASE DASH LPAREN NAD PLUS RPAREN DASH RXN
reversible: true
notes: GENE_ASSOCIATION: ACIAD1430 or ACIAD1725
is: |BENZALDEHYDE-DEHYDROGENASE-(NAD+)-RXN|
type: Reaction
name: benzaldehyde dehydrogenase (nad+)
product: 580750
fast: false
reactant: 580714
product: 580738
reactant: 580726
reactant: 580702

616742
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

578128
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET
type: SpeciesReference

R DCDPKIN DASH RXN
reactant: 583075
reactant: 583063
product: 583099
fast: false
reversible: true
product: 583087
name: dcdp kinase
type: Reaction
is: DCDPKIN-RXN
notes: GENE_ASSOCIATION: ACIAD0556
is: NDPK7

575118
stoichiometry: 1.0
species: M CPD DASH 78 LBRACKET C RBRACKET
type: SpeciesReference

M GLC DASH 6 DASH P LBRACKET C RBRACKET
constant: false
type: Species
name: glucose-6-phosphate
is: C01172
is: GLC-6-P
is: g6p-B
boundary condition: false
initial concentration: NaN
in compartment: 570138
initial amount: NaN
has only substance units: false

617550
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

577768
stoichiometry: 1.0
species: M CYTIDINE LBRACKET E RBRACKET
type: SpeciesReference

603453
stoichiometry: 1.0
species: M C16 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

582350
stoichiometry: 1.0
species: M NITRITE LBRACKET C RBRACKET
type: SpeciesReference

R SHIKIMATE DASH KINASE DASH RXN
product: 610786
notes: GENE_ASSOCIATION: ACIAD3354
fast: false
reversible: false
product: 610774
type: Reaction
reactant: 610762
reactant: 610750
name: shikimate-kinase
is: SHKK
is: SHIKIMATE-KINASE-RXN

597404
stoichiometry: 1.0
species: 570270
type: SpeciesReference

615981
stoichiometry: 1.0
species: M C6 COLON 0 DASH CARBOXYCOA LBRACKET C RBRACKET
type: SpeciesReference

594152
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

M C14 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
boundary condition: false
name: 3-oxotetradecanoyl-coa
has only substance units: false
initial concentration: NaN
is: C05261
in compartment: 570138
constant: false
type: Species
initial amount: NaN
is: 3otdcoa

580514
product: 580566
reactant: 580554
reactant: 580542
reactant: 580529
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: generic acyl-alcohol of wax assembly
type: Reaction

597356
stoichiometry: 1.0
species: M GLUTATHIONE LBRACKET C RBRACKET
type: SpeciesReference

610798
product: 610822
reactant: 610810
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of salicylacetate [extraorganism;cytosol](passive)
type: Reaction

R BENZYL DASH ALC DASH DEHYDROGENASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD1429 or ACIAD1578
fast: false
product: 607014
reactant: 606990
product: 607002
name: benzyl alcohol dehydrogenase
reactant: 606978
type: Reaction
is: BENZYL-ALC-DEHYDROGENASE-RXN
reversible: true

589608
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

580334
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

581568
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

615152
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

R TRANS DASH RXNIM DASH 5805
name: transport of benzoate [periplasm;cytosol](secondary symport) reversible
reversible: true
reactant: 604716
product: 604752
fast: false
reactant: 604728
product: 604740
is: TRANS-RXNIM-5805
notes: GENE_ASSOCIATION: ACIAD1434 or ACIAD1815
type: Reaction

586651
stoichiometry: 1.0
species: M 3 DASH ENOLPYRUVYL DASH SHIKIMATE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

608373
stoichiometry: 0.02
species: M CHARGED DASH MET DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

610364
stoichiometry: 1.0
species: M HS LBRACKET C RBRACKET
type: SpeciesReference

592850
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

617405
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

571280
stoichiometry: 1.0
species: 570907
type: SpeciesReference

571906
stoichiometry: 1.0
species: M XANTHINE LBRACKET C RBRACKET
type: SpeciesReference

601414
stoichiometry: 1.0
species: M PREPHENATE LBRACKET C RBRACKET
type: SpeciesReference

617368
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

618671
stoichiometry: 1.0
species: M GTP LBRACKET C RBRACKET
type: SpeciesReference

603561
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

586254
stoichiometry: 1.0
species: M CROTONYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M CPDIM DASH 6114 LBRACKET C RBRACKET
is: CPDIM-6114
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: salicylacetate
type: Species

594756
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET
type: SpeciesReference

M DIHYDROXY DASH ACETONE DASH PHOSPHATE LBRACKET C RBRACKET
is: dhap
is: C00111
initial amount: NaN
in compartment: 570138
is: DIHYDROXY-ACETONE-PHOSPHATE
boundary condition: false
constant: false
has only substance units: false
name: dihydroxy-acetone-phosphate
type: Species
initial concentration: NaN

594684
stoichiometry: 1.0
species: M 3 DASH HYDROXYPIMELOYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M THR LBRACKET E RBRACKET
is: C00188
name: l-threonine
type: Species
has only substance units: false
is: THR
in compartment: 570126
boundary condition: false
initial amount: NaN
constant: false
initial concentration: NaN
is: thr-L

604704
stoichiometry: 1.0
species: M FUM LBRACKET C RBRACKET
type: SpeciesReference

584749
stoichiometry: 0.298
species: M DATP LBRACKET C RBRACKET
type: SpeciesReference

R PREPHENATE DASH TRANSAMINE DASH RXN
reactant: 601402
product: 601439
reversible: true
name: l-arogenate aminotransferase
is: PREPHENATE-TRANSAMINE-RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD0112
reactant: 601414
product: 601427
type: Reaction

R SULFITE DASH REDUCT DASH RXN
product: 600054
product: 600030
reactant: 600018
reversible: true
fast: false
reactant: 600006
is: SULFITE-REDUCT-RXN
product: 600042
name: sulfite reductase (nadph)
is: SULRi
notes: GENE_ASSOCIATION: ACIAD2982 and ACIAD2981
type: Reaction

599238
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

R GLURS DASH RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD3371
product: 593644
reversible: true
reactant: 593620
is: GLUTRS
type: Reaction
name: glutamate--trna ligase
reactant: 593596
product: 593656
product: 593632
reactant: 593608
is: GLURS-RXN

591295
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

589884
stoichiometry: 1.0
species: M NA PLUS LBRACKET E RBRACKET
type: SpeciesReference

M CAFFEATE LBRACKET P RBRACKET
has only substance units: false
in compartment: 570114
type: Species
is: C01481
is: CAFFEATE
name: caffeate
initial concentration: NaN
initial amount: NaN
constant: false
boundary condition: false

M C16 COLON 0 LBRACKET E RBRACKET
is: hdca
is: C00249
name: hexadecanoate
boundary condition: false
has only substance units: false
is: PALMITATE
initial amount: NaN
initial concentration: NaN
type: Species
constant: false
in compartment: 570126

596430
stoichiometry: 1.0
species: M TRP LBRACKET E RBRACKET
type: SpeciesReference

581628
stoichiometry: 1.0
species: M SIROHYDROCHLORIN LBRACKET C RBRACKET
type: SpeciesReference

599442
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1949107276#R_C5_COLON_0_DASH_CARBOXY3HYDROXYCOA_DASH_DEHYDROGENASE_DASH_RXN
product: 586146
is: RXNIM-6202
fast: false
product: 586158
name: dicarboxylate hydroxyacyl-coa dehydrogenase (c5:0)
reactant: 586134
reversible: false
notes: GENE_ASSOCIATION: ACIAD1690
reactant: 586122
type: Reaction

581496
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

611315
stoichiometry: 1.0
species: M CHARGED DASH THR DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

R RXN DASH 7609
reactant: 591247
name: dgmp nucleotidase
fast: false
product: 591271
reactant: 591235
is: NTD9
reversible: false
is: RXN-7609
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227
type: Reaction
product: 591259

580262
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

M C6 COLON 0 DASH CARBOXYCOA LBRACKET C RBRACKET
is: C14143
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 5-carboxypentanoyl-coa
type: Species

612844
stoichiometry: 1.0
species: M 5 DASH PHOSPHORIBOSYL DASH N DASH FORMYLGLYCINEAMIDINE LBRACKET C RBRACKET
type: SpeciesReference

606221
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

579500
stoichiometry: 1.0
species: M CPD DASH 205 LBRACKET C RBRACKET
type: SpeciesReference

585278
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

598453
stoichiometry: 1.0
species: M 2 DASH KETO DASH ISOVALERATE LBRACKET C RBRACKET
type: SpeciesReference

610184
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

616498
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

616029
stoichiometry: 1.0
species: M L DASH ORNITHINE LBRACKET C RBRACKET
type: SpeciesReference

616631
stoichiometry: 1.0
species: M C6 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

R 3 DASH OXOADIPATE DASH COA DASH TRANSFERASE DASH RXN
reactant: 583387
product: 583423
notes: GENE_ASSOCIATION: ACIAD1695 and ACIAD1696 or ACIAD1448 and ACIAD1449 or ACIAD1704 and ACIAD1705
type: Reaction
is: 3-OXOADIPATE-COA-TRANSFERASE-RXN
product: 583411
fast: false
name: 3-oxoadipate coa-transferase
reactant: 583399
reversible: true

600307
stoichiometry: 1.0
species: M C12 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

615008
stoichiometry: 1.0
species: 570294
type: SpeciesReference

585605
stoichiometry: 0.052
species: 570294
type: SpeciesReference

584857
stoichiometry: 1.0
species: M UDP DASH N DASH ACETYLMURAMATE LBRACKET C RBRACKET
type: SpeciesReference

612098
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

589944
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

602936
stoichiometry: 1.0
species: M P DASH RIBOSYL DASH 4 DASH SUCCCARB DASH AMINOIMIDAZOLE LBRACKET C RBRACKET
type: SpeciesReference

611942
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

581616
stoichiometry: 1.0
species: M CPD DASH 245 LBRACKET C RBRACKET
type: SpeciesReference

M GLYCERATE LBRACKET C RBRACKET
is: glyc-R
is: C00258
initial concentration: NaN
initial amount: NaN
boundary condition: false
constant: false
in compartment: 570138
is: GLYCERATE
name: glycerate
has only substance units: false
type: Species

598863
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET
type: SpeciesReference

M FRU LBRACKET E RBRACKET
boundary condition: false
has only substance units: false
name: fructose
initial concentration: NaN
is: fru
is: C00095
in compartment: 570126
type: Species
initial amount: NaN
is: FRU
constant: false

602178
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET
type: SpeciesReference

589091
reactant: 589103
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of quinate
type: Reaction

610460
stoichiometry: 1.0
species: M CROTONYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

586170
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

593512
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

591367
stoichiometry: 1.0
species: M TRP LBRACKET C RBRACKET
type: SpeciesReference

592258
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

582870
stoichiometry: 1.0
species: M C18 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

M CHARGED DASH HIS DASH TRNAS LBRACKET C RBRACKET
boundary condition: false
name: charged histidine trna
is: C02988
constant: false
type: Species
has only substance units: false
initial amount: NaN
is: CHARGED-HIS-TRNAS
in compartment: 570138
is: histrna
initial concentration: NaN

612218
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 3623 LBRACKET E RBRACKET
initial concentration: NaN
type: Species
initial amount: NaN
name: sebacate
constant: false
is: CPD-3623
has only substance units: false
is: C08277
boundary condition: false
in compartment: 570126

579873
stoichiometry: 1.0
species: M PHE LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXNIM DASH 5808
product: 595829
reactant: 595817
notes: GENE_ASSOCIATION: ACIAD1433
is: TRANS-RXNIM-5808
fast: false
reversible: true
name: transport of benzoate [extraorganism;periplasm](passive)
type: Reaction

608483
stoichiometry: 0.13
species: M CHARGED DASH ALA DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

R RXN0 DASH 361
notes: GENE_ASSOCIATION: ACIAD2386
product: 607808
fast: false
reversible: false
is: CYTDH
type: Reaction
is: RXN0-361
product: 607820
reactant: 607796
reactant: 607784
name: cytidine hydrolase

R MUCONATE DASH CYCLOISOMERASE DASH RXN
product: 599958
reactant: 599946
notes: GENE_ASSOCIATION: ACIAD1446
is: MUCONATE-CYCLOISOMERASE-RXN
fast: false
reversible: true
name: muconate cycloisomerase
type: Reaction

591946
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

589680
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

595768
stoichiometry: 1.0
species: M GMP LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXNIM DASH 5747 DASH BIS
product: 579585
reactant: 579573
notes: GENE_ASSOCIATION: ACIAD2280 or ACIAD1036
is: TRANS-RXNIM-5747
fast: false
reversible: true
name: transport of l-proline [extraorganism;cytosol](passive)
type: Reaction

615380
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

609461
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

617766
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

618707
stoichiometry: 1.0
species: M GMP LBRACKET C RBRACKET
type: SpeciesReference

600271
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

608410
stoichiometry: 0.08
species: M CHARGED DASH VAL DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

571534
stoichiometry: 1.0
species: M DIOH DASH ISOVALERATE LBRACKET C RBRACKET
type: SpeciesReference

M OCTAPRENYL DASH METHOXY DASH BENZOQUINONE LBRACKET C RBRACKET
name: 2-octaprenyl-6-methoxy-1,4-benzoquinone
constant: false
in compartment: 570138
is: C05813
is: OCTAPRENYL-METHOXY-BENZOQUINONE
is: 2ombz
has only substance units: false
initial amount: NaN
initial concentration: NaN
type: Species
boundary condition: false

589728
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

570751
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans-9-carboxynon-2-enoyl-coa
type: Species

R R9 DASH RXN
product: 575601
reactant: 575589
reactant: 575577
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD1608 or ACIAD1701
is: R9-RXN
fast: false
reversible: true
name: crotonyl-coa hydratase
type: Reaction

595044
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R P DASH PANTOCYSDECARB DASH RXN
product: 597803
is: PPCDC
fast: false
is: P-PANTOCYSDECARB-RXN
reactant: 597777
product: 597790
notes: GENE_ASSOCIATION: ACIAD3125
reversible: false
name: phosphopantothenoylcysteine decarboxylase
type: Reaction

602503
stoichiometry: 1.0
species: M OXIDIZED DASH GLUTATHIONE LBRACKET C RBRACKET
type: SpeciesReference

599694
stoichiometry: 1.0
species: M PROPIONATE LBRACKET C RBRACKET
type: SpeciesReference

576815
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

577044
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

608955
stoichiometry: 1.0
species: M DAMP LBRACKET C RBRACKET
type: SpeciesReference

R CDPREDUCT DASH RXN
is: CDPREDUCT-RXN
notes: GENE_ASSOCIATION: ACIAD0724 and ACIAD0722
product: 592150
fast: false
name: cdp reductase
reversible: true
type: Reaction
product: 592174
reactant: 592126
reactant: 592138
is: RNDR3
product: 592162

R RXN DASH 7607
product: 594007
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227
is: NTD11
product: 593995
is: RXN-7607
fast: false
reactant: 593983
reversible: false
type: Reaction
name: imp nucleotidase
reactant: 593971

M BENZALDEHYDE LBRACKET C RBRACKET
name: benzaldehyde
initial amount: NaN
initial concentration: NaN
in compartment: 570138
type: Species
constant: false
boundary condition: false
has only substance units: false
is: BENZALDEHYDE
is: C00261

M FE PLUS 2 LBRACKET C RBRACKET
initial concentration: NaN
constant: false
is: FE+2
initial amount: NaN
is: C00023
type: Species
in compartment: 570138
has only substance units: false
boundary condition: false
name: fe+2
is: fe2

M UDP DASH N DASH ACETYLMURAMATE LBRACKET C RBRACKET
type: Species
is: uamr
has only substance units: false
is: UDP-N-ACETYLMURAMATE
constant: false
name: udp-n-acetylmuramate
is: C01050
initial amount: NaN
in compartment: 570138
initial concentration: NaN
boundary condition: false

591825
stoichiometry: 1.0
species: M GTP LBRACKET C RBRACKET
type: SpeciesReference

616414
stoichiometry: 1.0
species: M XANTHINE LBRACKET C RBRACKET
type: SpeciesReference

573363
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET
type: SpeciesReference

572651
stoichiometry: 1.0
species: 570330
type: SpeciesReference

R GLUTRNAREDUCT DASH RXN
is: GLUTRNAREDUCT-RXN
name: glutamyl trna reductase
fast: false
product: 575889
reversible: true
reactant: 575853
reactant: 575865
is: GLUTRR
product: 575901
product: 575877
notes: GENE_ASSOCIATION: ACIAD2900
type: Reaction

607026
stoichiometry: 2.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

R PSERPHOSPHA DASH RXN
type: Reaction
is: PSP L
fast: false
reactant: 588658
product: 588682
notes: GENE_ASSOCIATION: ACIAD3567
reactant: 588646
reversible: false
name: phosphoserine phosphatase
product: 588670
is: PSERPHOSPHA-RXN

606918
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

M URACIL LBRACKET E RBRACKET
is: URACIL
initial amount: NaN
is: C00106
is: ura
constant: false
boundary condition: false
initial concentration: NaN
name: uracil
in compartment: 570126
has only substance units: false
type: Species

579717
stoichiometry: 1.0
species: M DEOXYADENOSINE LBRACKET E RBRACKET
type: SpeciesReference

580834
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET
type: SpeciesReference

588418
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

575889
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

610822
stoichiometry: 1.0
species: M CPDIM DASH 6114 LBRACKET C RBRACKET
type: SpeciesReference

575925
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

591427
stoichiometry: 1.0
species: 570535
type: SpeciesReference

M URATE LBRACKET C RBRACKET
initial concentration: NaN
type: Species
constant: false
name: urate
in compartment: 570138
boundary condition: false
is: URATE
initial amount: NaN
is: urate
is: C00366
has only substance units: false

600993
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

578838
stoichiometry: 1.0
species: M SER LBRACKET C RBRACKET
type: SpeciesReference

R C14 COLON 0 DASH COATRANSFERASE DASH RXN
reactant: 614522
type: Reaction
name: acyl coa transferase (c14:0)
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
reversible: false
product: 614535
reactant: 614496
product: 614548
product: 614561
is: ACYLCOASYN-RXN
reactant: 614509
fast: false
is: FACOAL140t2pp

577322
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

583039
reactant: 583051
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-arginine
type: Reaction

M IMINOASPARTATE LBRACKET C RBRACKET
name: iminoaspartate
is: C05840
boundary condition: false
is: IMINOASPARTATE
initial amount: NaN
initial concentration: NaN
type: Species
constant: false
in compartment: 570138
has only substance units: false
is: iasp

590897
stoichiometry: 1.0
species: M CHARGED DASH ASN DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

614075
reactant: 614087
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: exchange flux of h2o
type: Reaction

594972
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M CHARGED DASH LYS DASH TRNAS LBRACKET C RBRACKET
initial amount: NaN
type: Species
in compartment: 570138
name: charged lysine trna
is: lystrna
boundary condition: false
constant: false
has only substance units: false
initial concentration: NaN
is: C01931
is: CHARGED-LYS-TRNAS

571498
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

M GLUCOSAMINE DASH 1P LBRACKET C RBRACKET
boundary condition: false
initial amount: NaN
in compartment: 570138
is: GLUCOSAMINE-1P
is: C06156
name: glucosamine-1p
has only substance units: false
is: gam1p
initial concentration: NaN
type: Species
constant: false

593222
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET
type: SpeciesReference

580454
stoichiometry: 1.0
species: M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET
type: SpeciesReference

M GLYCOLALDEHYDE LBRACKET C RBRACKET
has only substance units: false
constant: false
type: Species
initial concentration: NaN
boundary condition: false
in compartment: 570138
is: C00266
is: gcald
is: GLYCOLALDEHYDE
name: glycolaldehyde
initial amount: NaN

615452
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

572531
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

618659
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

576370
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

583616
stoichiometry: 0.299
species: M CTP LBRACKET C RBRACKET
type: SpeciesReference

605042
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

576225
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET
type: SpeciesReference

590994
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

594828
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

601041
stoichiometry: 1.0
species: M 4 DASH FUMARYL DASH ACETOACETATE LBRACKET C RBRACKET
type: SpeciesReference

613350
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

608217
stoichiometry: 1.0
species: M ERYTHROSE DASH 4P LBRACKET C RBRACKET
type: SpeciesReference

601574
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET
type: SpeciesReference

590560
stoichiometry: 1.0
species: M HOMO DASH CYS LBRACKET C RBRACKET
type: SpeciesReference

579957
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

607362
stoichiometry: 1.0
species: M CPD DASH 104 LBRACKET P RBRACKET
type: SpeciesReference

579018
stoichiometry: 1.0
species: M L DASH GLUTAMATE DASH 5 DASH P LBRACKET C RBRACKET
type: SpeciesReference

R C16 COLON 1 LPAREN C7 RPAREN DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
product: 587925
product: 587913
reactant: 587901
notes: GENE_ASSOCIATION: ACIAD1381
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
fast: false
reversible: false
name: 3hydroxyacyl-acp dehydratase (c16:1(c7))
type: Reaction

606846
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET
type: SpeciesReference

592138
stoichiometry: 1.0
species: M RED DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
type: SpeciesReference

581050
stoichiometry: 1.0
species: M 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET
type: SpeciesReference

580566
stoichiometry: 1.0
species: 570234
type: SpeciesReference

593632
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

586711
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

579163
stoichiometry: 1.0
species: M HOMO DASH SER LBRACKET E RBRACKET
type: SpeciesReference

599946
stoichiometry: 1.0
species: M CPD DASH 741 LBRACKET C RBRACKET
type: SpeciesReference

575673
stoichiometry: 1.0
species: M 3 DASH P DASH HYDROXYPYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

R C8 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
reactant: 578489
fast: false
reactant: 578501
product: 578513
product: 578525
is: 3OAR80
is: 3-OXOACYL-ACP-REDUCT-RXN
notes: GENE_ASSOCIATION: ACIAD0871
reversible: false
name: 3oxoacyl-acp reductase (c8:0)
type: Reaction

M DIHYDROXY DASH BUTANONE DASH P LBRACKET C RBRACKET
in compartment: 570138
boundary condition: false
has only substance units: false
initial amount: NaN
is: DIHYDROXY-BUTANONE-P
name: 3,4-dihydroxy-2-butanone-4-p
type: Species
initial concentration: NaN
constant: false
is: db4p

M C4 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: Species
boundary condition: false
is: C04618
in compartment: 570138
constant: false
has only substance units: false
initial concentration: NaN
is: 3haACP
initial amount: NaN
name: 3-hydroxybutanoyl-acp

595418
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

586434
stoichiometry: 1.0
species: 571028
type: SpeciesReference

M ETOH LBRACKET E RBRACKET
initial amount: NaN
constant: false
is: etoh
boundary condition: false
is: ETOH
name: ethanol
initial concentration: NaN
in compartment: 570126
is: C00469
type: Species
has only substance units: false

M KDO LBRACKET C RBRACKET
constant: false
boundary condition: false
is: kdo
type: Species
is: KDO
is: C01187
name: 3-deoxy-d-manno-octulosonate
in compartment: 570138
initial amount: NaN
has only substance units: false
initial concentration: NaN

613859
stoichiometry: 1.0
species: M CAFFEATE LBRACKET C RBRACKET
type: SpeciesReference

M 4 DASH AMINO DASH BUTYRATE LBRACKET C RBRACKET
type: Species
is: 4abut
constant: false
is: C00334
initial concentration: NaN
has only substance units: false
in compartment: 570138
boundary condition: false
is: 4-AMINO-BUTYRATE
initial amount: NaN
name: 4-aminobutyrate

603236
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

609388
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

587276
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

600668
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

592958
stoichiometry: 1.0
species: M BUTYRYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

610702
stoichiometry: 1.0
species: 570318
type: SpeciesReference

604692
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

576791
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

602394
stoichiometry: 1.0
species: M METHYLENE DASH THF LBRACKET C RBRACKET
type: SpeciesReference

R PREPHENATEDEHYDRAT DASH RXN
product: 597894
notes: GENE_ASSOCIATION: ACIAD2223
reactant: 597868
is: PREPHENATEDEHYDRAT-RXN
name: prephenate dehydratase
type: Reaction
reversible: false
is: PPNDH
fast: false
product: 597907
product: 597881

571389
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

578356
stoichiometry: 1.0
species: M ACETOACETYL DASH S DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

602310
stoichiometry: 1.0
species: M APS LBRACKET C RBRACKET
type: SpeciesReference

604379
stoichiometry: 1.0
species: M S DASH ADENOSYL DASH 4 DASH METHYLTHIO DASH 2 DASH OXOBUTANOATE LBRACKET C RBRACKET
type: SpeciesReference

580042
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

M CHARGED DASH ALA DASH TRNAS LBRACKET C RBRACKET
is: alatrna
is: CHARGED-ALA-TRNAS
name: charged alanine trna
has only substance units: false
is: C00886
in compartment: 570138
initial amount: NaN
boundary condition: false
initial concentration: NaN
constant: false
type: Species

589355
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

595285
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

597920
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET E RBRACKET
type: SpeciesReference

605499
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET
type: SpeciesReference

582738
stoichiometry: 1.0
species: M VANILLATE LBRACKET E RBRACKET
type: SpeciesReference

581966
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

585484
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

597561
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

593090
stoichiometry: 1.0
species: M GLUTARYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

R RXN DASH 1126
name: caffeate coa ligase
reversible: false
product: 613895
product: 613907
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1724
is: RXN-1126
reactant: 613871
reactant: 613859
fast: false
reactant: 613883
product: 613919

573999
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

M ANTHRANILATE LBRACKET C RBRACKET
in compartment: 570138
constant: false
is: ANTHRANILATE
has only substance units: false
initial concentration: NaN
is: C00108
type: Species
initial amount: NaN
is: anth
boundary condition: false
name: 2-aminobenzoate

581785
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

592644
stoichiometry: 1.0
species: 570414
type: SpeciesReference

R GUANINE DASH DEAMINASE DASH RXN
product: 592524
notes: GENE_ASSOCIATION: ACIAD3668
is: GUAD
is: GUANINE-DEAMINASE-RXN
reversible: false
name: guanine deaminase
reactant: 592511
type: Reaction
fast: false
product: 592536
reactant: 592499

611254
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

592584
stoichiometry: 2.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

582930
stoichiometry: 1.0
species: M ARG DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

R RXN0 DASH 884
is: DMPPS
product: 587781
product: 587757
product: 587769
reactant: 587733
reactant: 587745
notes: GENE_ASSOCIATION: ACIAD3322
reactant: 587721
fast: false
name: 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate reductase (dmpp)
type: Reaction
reversible: true
is: RXN0-884

R C8 COLON 0 DASH CARBOXY DASH COATRANSFERASE DASH RXN
is: RXNIM-6198
type: Reaction
reversible: false
product: 581460
reactant: 581412
product: 581472
notes: GENE_ASSOCIATION: ACIAD1695 and ACIAD1696
name: dicarboxylate acyl coa transferase (c8:0)
product: 581448
reactant: 581436
fast: false
reactant: 581424

595901
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M CHARGED DASH ILE DASH TRNAS LBRACKET C RBRACKET
in compartment: 570138
constant: false
type: Species
is: CHARGED-ILE-TRNAS
is: iletrna
has only substance units: false
is: C03127
initial concentration: NaN
initial amount: NaN
boundary condition: false
name: charged isoleucine trna

598719
stoichiometry: 1.0
species: M ETOH LBRACKET C RBRACKET
type: SpeciesReference

R NITRILE DASH HYDRATASE DASH RXN
product: 593548
reactant: 593536
reactant: 593524
notes: GENE_ASSOCIATION: ACIAD1615 and ACIAD1616
is: NITRILE-HYDRATASE-RXN
fast: false
reversible: false
name: propane nitrile hydratase
type: Reaction

596213
stoichiometry: 1.0
species: M C5 LBRACKET C RBRACKET
type: SpeciesReference

582026
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

596887
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET E RBRACKET
type: SpeciesReference

R C6 COLON 0 DASH 2ENOYLACP DASH REDUCTASE DASH RXN
fast: false
is: EAR60x
reactant: 585665
reactant: 585677
name: 2enoyl-acp reductase (c6:0)
notes: GENE_ASSOCIATION: ACIAD3116
is: ENOYL-ACP-REDUCT-NADH-RXN
type: Reaction
product: 585689
reversible: false
product: 585701

M HOMOSERINE DASH LACTONE LBRACKET E RBRACKET
is: HOMOSERINE-LACTONE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: homoserine lactone
type: Species

599008
stoichiometry: 1.0
species: M THYMIDINE LBRACKET E RBRACKET
type: SpeciesReference

580114
stoichiometry: 1.0
species: M GLC LBRACKET P RBRACKET
type: SpeciesReference

M UBIQUINOL DASH 8 LBRACKET C RBRACKET
initial amount: NaN
is: C00390
constant: false
is: q8h2
in compartment: 570138
boundary condition: false
has only substance units: false
initial concentration: NaN
type: Species
name: ubiquinol(40)
is: UBIQUINOL-8

M C10 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: Species
is: dc2coa
constant: false
initial amount: NaN
in compartment: 570138
initial concentration: NaN
name: trans-dec-2-enoyl-coa
is: C05275
has only substance units: false
boundary condition: false

572399
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M C6 COLON 0 LBRACKET E RBRACKET
is: C01585
has only substance units: false
in compartment: 570126
name: hexanoate
initial amount: NaN
is: hxa
is: HEXANOATE
constant: false
boundary condition: false
initial concentration: NaN
type: Species

609980
stoichiometry: 1.0
species: M CH3 DASH MALONATE DASH S DASH ALD LBRACKET C RBRACKET
type: SpeciesReference

R C5 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
product: 613688
reactant: 613676
reactant: 613664
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
is: ENOYL-COA-HYDRAT-RXN
fast: false
reversible: false
name: enoyl-coa hydratase (c5:0)
type: Reaction

R TRANS DASH RXN DASH 99
notes: GENE_ASSOCIATION: ACIAD1011 or ACIAD1012 or ACIAD3460
product: 617550
fast: false
product: 617562
reactant: 617538
reactant: 617525
is: TRANS-RXN-99
reversible: false
type: Reaction
is: CHLt2pp
name: transport of choline [extraorganism;cytosol](secondary symport)

590344
stoichiometry: 1.0
species: 570968
type: SpeciesReference

R C12 COLON 0 DASH ACP DASH HYDROLASE DASH RXN
reactant: 571786
name: acyl-acp hydrolase (c12:0)
type: Reaction
notes: GENE_ASSOCIATION:
product: 571810
is: FA120ACPHi
reversible: false
fast: false
reactant: 571774
product: 571798

602599
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET
type: SpeciesReference

600488
stoichiometry: 1.0
species: M GLC DASH 1 DASH P LBRACKET C RBRACKET
type: SpeciesReference

575334
stoichiometry: 1.0
species: M 3 DASH OXOADIPATE DASH ENOL DASH LACTONE LBRACKET C RBRACKET
type: SpeciesReference

612110
stoichiometry: 1.0
species: M CATECHOL LBRACKET C RBRACKET
type: SpeciesReference

600524
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

605475
stoichiometry: 1.0
species: M SER LBRACKET C RBRACKET
type: SpeciesReference

618441
stoichiometry: 1.0
species: M UDP DASH GLUCOSE LBRACKET C RBRACKET
type: SpeciesReference

588646
stoichiometry: 1.0
species: M 3 DASH P DASH SERINE LBRACKET C RBRACKET
type: SpeciesReference

M PROPIONATE LBRACKET C RBRACKET
is: ppa
in compartment: 570138
is: C00163
name: propionate
type: Species
boundary condition: false
initial amount: NaN
is: PROPIONATE
has only substance units: false
initial concentration: NaN
constant: false

R MALSYN DASH RXN
reactant: 585242
is: MALSYN-RXN
reactant: 585254
product: 585266
name: malate synthase
reactant: 585229
reversible: false
is: MALS
fast: false
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2335
product: 585278

595526
stoichiometry: 1.0
species: M DIACYLGLYCEROL LBRACKET C RBRACKET
type: SpeciesReference

606582
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M THR DASH TRNAS LBRACKET C RBRACKET
boundary condition: false
type: Species
initial amount: NaN
is: trnathr
initial concentration: NaN
constant: false
in compartment: 570138
name: threonine trna
has only substance units: false
is: THR-TRNAS
is: C01651

605114
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

596189
stoichiometry: 1.0
species: M CPDIM DASH 6114 LBRACKET E RBRACKET
type: SpeciesReference

575444
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

577106
stoichiometry: 1.0
species: 570559
type: SpeciesReference

589463
product: 589487
reactant: 589475
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of lactate [extraorganism;cytosol](passive)
type: Reaction

577948
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

601342
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

617296
stoichiometry: 1.0
species: M D DASH ALANINE LBRACKET E RBRACKET
type: SpeciesReference

571160
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: DNA_W
type: Species

573771
stoichiometry: 1.0
species: M 2 DASH C DASH METHYL DASH D DASH ERYTHRITOL DASH 4 DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

604018
stoichiometry: 1.0
species: M ADENINE LBRACKET C RBRACKET
type: SpeciesReference

609231
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M O DASH PHOSPHO DASH L DASH HOMOSERINE LBRACKET C RBRACKET
initial concentration: NaN
type: Species
initial amount: NaN
constant: false
boundary condition: false
name: o-phospho-l-homoserine
in compartment: 570138
is: O-PHOSPHO-L-HOMOSERINE
is: phom
has only substance units: false
is: C01102

577611
reactant: 577623
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of uracil
type: Reaction

600776
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

595394
stoichiometry: 1.0
species: M ASP DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

600042
stoichiometry: 3.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

601282
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M ERYTHROSE DASH 4P LBRACKET C RBRACKET
is: ERYTHROSE-4P
is: e4p
initial amount: NaN
initial concentration: NaN
type: Species
constant: false
has only substance units: false
is: C00279
boundary condition: false
name: erythrose-4-phosphate
in compartment: 570138

612904
stoichiometry: 1.0
species: 570811
type: SpeciesReference

578465
stoichiometry: 1.0
species: M C12 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET
initial concentration: NaN
has only substance units: false
type: Species
boundary condition: false
in compartment: 570138
is: L-ALPHA-ALANINE
is: C00041
initial amount: NaN
name: l-alanine
is: ala-L
constant: false

M FAD LBRACKET C RBRACKET
boundary condition: false
name: fad
is: FAD
initial amount: NaN
initial concentration: NaN
is: fad
in compartment: 570138
is: C00016
has only substance units: false
type: Species
constant: false

591645
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

592536
stoichiometry: 1.0
species: M XANTHINE LBRACKET C RBRACKET
type: SpeciesReference

597200
stoichiometry: 1.0
species: M C8 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

576153
stoichiometry: 1.0
species: M CPD DASH 6501 LBRACKET C RBRACKET
type: SpeciesReference

601900
stoichiometry: 1.0
species: M CTP LBRACKET C RBRACKET
type: SpeciesReference

610930
stoichiometry: 0.028
species: 570366
type: SpeciesReference

590452
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

R ACETOLACTSYN DASH RXN
is: ACETOLACTSYN-RXN
notes: GENE_ASSOCIATION: ( ACIAD0999 or ACIAD3104 ) and ACIAD3103
is: ACLS
fast: false
product: 612665
name: acetolactate synthase
type: Reaction
reversible: false
product: 612653
reactant: 612640

586038
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

M C8 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
constant: false
is: C05266
name: 3-hydroxyoctanoyl-coa
has only substance units: false
type: Species
in compartment: 570138
is: 3hocoa
initial amount: NaN
initial concentration: NaN
boundary condition: false

R UDPREDUCT DASH RXN
product: 612628
fast: false
is: UDPREDUCT-RXN
reactant: 612592
product: 612604
reactant: 612580
product: 612616
type: Reaction
reversible: true
notes: GENE_ASSOCIATION: ACIAD0724 and ACIAD0722
is: RNDR4
name: udp reductase

594248
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

572243
stoichiometry: 1.0
species: M CPD DASH 371 LBRACKET C RBRACKET
type: SpeciesReference

609872
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R C12 COLON 0 DASH COA DASH DEHYDROGENASE DASH RXN
reactant: 599814
name: acyl-coa dehydrogenase (c12:0)
reactant: 599802
type: Reaction
is: ACOAD5f
is: ACYLCOADEHYDROG-RXN
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566
product: 599838
fast: false
reversible: false
product: 599826

592475
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

582134
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

596321
stoichiometry: 2.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

596297
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

R PRAISOM DASH RXN
product: 606726
reactant: 606714
notes: GENE_ASSOCIATION: ACIAD0635
is: PRAISOM-RXN
is: PRAIi
fast: false
reversible: false
name: phosphoribosylanthranilate isomerase
type: Reaction

587493
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: SpeciesReference

596995
product: 597031
type: Reaction
reactant: 597019
reversible: true
product: 597055
notes: GENE_ASSOCIATION: ACIAD3383
product: 597043
name: fatty acyl-coa reductase (c16:0)
reactant: 597007
fast: false

618224
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

607892
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

600331
stoichiometry: 1.0
species: M URACIL LBRACKET C RBRACKET
type: SpeciesReference

R C14 COLON 1 LPAREN C5 RPAREN DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
product: 585157
fast: false
type: Reaction
name: hydroxyacyl-coa dehydrogenase (c14:1(c5))
product: 585145
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
reversible: false
reactant: 585121
reactant: 585133
is: OHACYL-COA-DEHYDROG-RXN

R SUCCORNTRANSAM DASH RXN
reversible: true
product: 575469
fast: false
name: succinylornithine transaminase
reactant: 575457
notes: GENE_ASSOCIATION: ACIAD1284
product: 575481
is: SUCCORNTRANSAM-RXN
reactant: 575444
type: Reaction
is: SOTA

574926
stoichiometry: 1.0
species: M MET LBRACKET C RBRACKET
type: SpeciesReference

591007
stoichiometry: 1.0
species: M UNDECAPRENYL DASH P LBRACKET C RBRACKET
type: SpeciesReference

587120
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

587348
stoichiometry: 1.0
species: M GLYCEROL DASH 3P LBRACKET C RBRACKET
type: SpeciesReference

572194
stoichiometry: 1.0
species: M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET
type: SpeciesReference

610148
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

614405
stoichiometry: 1.0
species: M PROPIONATE LBRACKET E RBRACKET
type: SpeciesReference

579428
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

R DTDPGLUCDEHYDRAT DASH RXN
is: TDPGDH
product: 593935
reactant: 593910
reversible: false
product: 593923
is: DTDPGLUCDEHYDRAT-RXN
fast: false
name: dtdp-glucose 4,6-dehydratase
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0076

583973
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

R UDPKIN DASH RXN
notes: GENE_ASSOCIATION: ACIAD0556
fast: false
is: NDPK2
reactant: 614888
reactant: 614900
is: UDPKIN-RXN
product: 614924
product: 614912
name: udp kinase
reversible: true
type: Reaction

586326
stoichiometry: 1.0
species: M CHARGED DASH GLN DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

M OROTATE LBRACKET C RBRACKET
initial amount: NaN
in compartment: 570138
constant: false
initial concentration: NaN
is: OROTATE
has only substance units: false
type: Species
name: orotate
is: C00295
is: orot
boundary condition: false

598079
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

573843
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

571426
stoichiometry: 1.0
species: M GDP LBRACKET C RBRACKET
type: SpeciesReference

614483
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

594309
stoichiometry: 1.0
species: M DUTP LBRACKET C RBRACKET
type: SpeciesReference

575565
stoichiometry: 1.0
species: M S DASH LACTOYL DASH GLUTATHIONE LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 244 LBRACKET C RBRACKET
in compartment: 570138
name: 2-nitropropane
type: Species
is: C02116
boundary condition: false
constant: false
initial amount: NaN
has only substance units: false
initial concentration: NaN
is: CPD-244

580726
stoichiometry: 1.0
species: M BENZALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

618599
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

611194
stoichiometry: 1.0
species: M XYLULOSE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

599766
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

580614
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

R 6 DASH CARBOXYHEXANOATE DASH DASH COA DASH LIGASE DASH RXN
type: Reaction
reactant: 579476
reactant: 579488
is: CHCOAL
reactant: 579500
product: 579537
name: 6-carboxyhexanoate--coa ligase
fast: false
product: 579525
is: 6-CARBOXYHEXANOATE--COA-LIGASE-RXN
product: 579513
reversible: true
notes: GENE_ASSOCIATION: ACIAD1826

M 1 DASH AMINO DASH PROPAN DASH 2 DASH ONE DASH 3 DASH PHOSPHATE LBRACKET C RBRACKET
is: 1-AMINO-PROPAN-2-ONE-3-PHOSPHATE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 1-amino-propan-2-one-3-phosphate
type: Species

607134
stoichiometry: 1.0
species: M CPDIM DASH 6116 LBRACKET E RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH PHE
notes: GENE_ASSOCIATION: ACIAD1343 or ACIAD2969
fast: false
type: Reaction
reactant: 588706
reversible: true
is: PHEt2rpp
is: TRANS-RXNIM-5919
product: 588718
name: transport of l-phenylalanine [extraorganism;cytosol](secondary symport)
product: 588730
reactant: 588694

593740
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

609679
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH 151
name: transport of so42- [extraorganism;cytosol](secondary symport)
type: Reaction
product: 614260
is: TRANS-RXN-151
fast: false
notes: GENE_ASSOCIATION: ACIAD3384 or ACIAD1241
reactant: 614248
reactant: 614236
product: 614273
reversible: false

576707
stoichiometry: 1.0
species: M CPDIM DASH 6114 LBRACKET C RBRACKET
type: SpeciesReference

616306
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

591717
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

617874
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

574288
stoichiometry: 1.0
species: M PUTRESCINE LBRACKET C RBRACKET
type: SpeciesReference

R TRYPTOPHAN DASH DASH TRNA DASH LIGASE DASH RXN
reactant: 595901
type: Reaction
reactant: 595889
is: TRPTRS
name: tryptophan--trna ligase
reversible: false
product: 595913
reactant: 595877
product: 595937
product: 595925
is: TRYPTOPHAN--TRNA-LIGASE-RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD2871

588935
stoichiometry: 1.0
species: M CPD DASH 618 LBRACKET C RBRACKET
type: SpeciesReference

608845
stoichiometry: 0.05
species: M THR DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

599081
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

577479
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

M XANTHINE LBRACKET C RBRACKET
in compartment: 570138
type: Species
boundary condition: false
is: C00385
is: xan
has only substance units: false
constant: false
initial amount: NaN
initial concentration: NaN
is: XANTHINE
name: xanthine

585532
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

598936
product: 598984
product: 598972
reactant: 598960
reactant: 598948
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: acyl-acp hydrolase (c18:1(c9))
type: Reaction

612580
stoichiometry: 1.0
species: M UDP LBRACKET C RBRACKET
type: SpeciesReference

589199
stoichiometry: 1.0
species: M ACETOACETYL DASH S DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

596057
stoichiometry: 1.0
species: M C14 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: SpeciesReference

601984
stoichiometry: 1.0
species: M FRU LBRACKET E RBRACKET
type: SpeciesReference

602659
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

589259
stoichiometry: 1.0
species: M TYR LBRACKET C RBRACKET
type: SpeciesReference

603802
reactant: 603814
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of tetradecanoate
type: Reaction

593150
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

M ASN DASH TRNAS LBRACKET C RBRACKET
boundary condition: false
has only substance units: false
is: trnaasn
is: C01637
in compartment: 570138
is: ASN-TRNAS
initial concentration: NaN
initial amount: NaN
constant: false
type: Species
name: asparagine trna

575817
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

592366
stoichiometry: 1.0
species: M GLY LBRACKET C RBRACKET
type: SpeciesReference

571304
stoichiometry: 1.0
species: M LL DASH DIAMINOPIMELATE LBRACKET C RBRACKET
type: SpeciesReference

M UREA LBRACKET E RBRACKET
constant: false
type: Species
has only substance units: false
initial concentration: NaN
is: UREA
is: urea
name: urea
boundary condition: false
initial amount: NaN
in compartment: 570126
is: C00086

572880
stoichiometry: 1.0
species: M OXIDIZED DASH GLUTATHIONE LBRACKET C RBRACKET
type: SpeciesReference

592054
stoichiometry: 1.0
species: M GTP LBRACKET C RBRACKET
type: SpeciesReference

614626
stoichiometry: 1.0
species: M DIHYDRONEOPTERIN DASH P LBRACKET C RBRACKET
type: SpeciesReference

595610
stoichiometry: 1.0
species: M AMINO DASH HYDROXYMETHYL DASH METHYLPYRIMIDINE DASH PP LBRACKET C RBRACKET
type: SpeciesReference

582447
stoichiometry: 1.0
species: M PROTOHEME LBRACKET C RBRACKET
type: SpeciesReference

M MAL LBRACKET E RBRACKET
initial amount: NaN
is: C00149
is: MAL
has only substance units: false
type: Species
is: mal-L
constant: false
name: malate
boundary condition: false
initial concentration: NaN
in compartment: 570126

589500
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET
type: SpeciesReference

594032
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

583147
stoichiometry: 1.0
species: M HISTIDINOL LBRACKET C RBRACKET
type: SpeciesReference

588875
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

M C14 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
name: trans-tetradec-2-enoyl-coa
type: Species
is: td2coa
in compartment: 570138
is: C05273
constant: false
initial concentration: NaN
has only substance units: false
initial amount: NaN
boundary condition: false

576454
type: Reaction
notes: GENE_ASSOCIATION:
reactant: 576502
reactant: 576490
fast: false
reactant: 576478
name: generic acyl acp of lps assembly
reversible: true
reactant: 576466
product: 576514

600885
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M GLT LBRACKET E RBRACKET
type: Species
boundary condition: false
initial concentration: NaN
has only substance units: false
is: GLT
name: l-glutamate
is: glu-L
is: C00025
constant: false
initial amount: NaN
in compartment: 570126

593379
stoichiometry: 1.0
species: M CPD DASH 205 LBRACKET C RBRACKET
type: SpeciesReference

607254
stoichiometry: 1.0
species: M CPDIM DASH 6112 LBRACKET C RBRACKET
type: SpeciesReference

593995
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

612760
stoichiometry: 1.0
species: M KDO LBRACKET C RBRACKET
type: SpeciesReference

618502
stoichiometry: 1.0
species: 570210
type: SpeciesReference

M 3 DASH HYDROXY DASH ISOBUTYRATE LBRACKET C RBRACKET
is: 3-HYDROXY-ISOBUTYRATE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-hydroxy-isobutyrate
type: Species

593006
stoichiometry: 1.0
species: M TOLUENE LBRACKET E RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH CYTIDINE
product: 616306
name: transport of cytidine [extraorganism;cytosol](secondary symport)
reversible: false
notes: GENE_ASSOCIATION: ACIAD2389
product: 616318
reactant: 616294
reactant: 616282
type: Reaction
is: TRANS-RXN-108B
fast: false
is: CYTDt2pp

573543
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

574854
stoichiometry: 1.0
species: M BIOTIN LBRACKET C RBRACKET
type: SpeciesReference

609003
stoichiometry: 1.0
species: M UROPORPHYRINOGEN DASH III LBRACKET C RBRACKET
type: SpeciesReference

R METHYLENETHFDEHYDROG DASH NADP DASH RXN
reversible: true
product: 595176
fast: false
is: MTHFD
is: METHYLENETHFDEHYDROG-NADP-RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2553 or ACIAD2847 or ACIAD1783
name: methylenetetrahydrofolate dehydrogenase (nadp+)
reactant: 595152
product: 595164
reactant: 595140

579091
stoichiometry: 1.0
species: M CPD DASH 470 LBRACKET C RBRACKET
type: SpeciesReference

587408
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

589572
stoichiometry: 1.0
species: M D DASH LACTATE LBRACKET E RBRACKET
type: SpeciesReference

604584
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

597079
stoichiometry: 1.0
species: M CPD DASH 148 LBRACKET E RBRACKET
type: SpeciesReference

R 3 DASH HYDROXYBUTYRATE DASH DEHYDROGENASE DASH RXN
product: 612820
name: 3-hydroxybutyrate dehydrogenase
reactant: 612808
type: Reaction
fast: false
reversible: true
reactant: 612796
product: 612832
is: 3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN
notes: GENE_ASSOCIATION: ACIAD2509

577527
reactant: 577539
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 4-guanidinobutanoate
type: Reaction

605198
product: 605222
reactant: 605210
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of octane [extraorganism;cytosol](passive)
type: Reaction

584497
stoichiometry: 1.0
species: M UDP LBRACKET C RBRACKET
type: SpeciesReference

590789
stoichiometry: 1.0
species: M CMP DASH KDO LBRACKET C RBRACKET
type: SpeciesReference

579235
stoichiometry: 0.735
species: M L DASH 1 DASH PHOSPHATIDYL DASH ETHANOLAMINE LBRACKET C RBRACKET
type: SpeciesReference

583726
stoichiometry: 1.0
species: M PREPHENATE LBRACKET C RBRACKET
type: SpeciesReference

586602
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R C12 COLON 0 DASH 2ENOYLACP DASH ISOMERASE DASH RXN
product: 612784
reactant: 612773
notes: GENE_ASSOCIATION:
is: TRANS-2-DECENOYL-ACP-ISOM-RXN
fast: false
reversible: true
name: 2enoyl-acp isomerase (c12:0)
type: Reaction

R H2NEOPTERINALDOL DASH RXN
is: H2NEOPTERINALDOL-RXN
product: 616680
is: DHNPA2
fast: false
reversible: false
name: dihydroneopterin aldolase
reactant: 616656
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2408
product: 616668

581352
stoichiometry: 0.8205
species: 570342
type: SpeciesReference

603128
stoichiometry: 1.0
species: M CPD0 DASH 181 LBRACKET C RBRACKET
type: SpeciesReference

614379
stoichiometry: 1.0
species: M TRANS DASH 23 DASH DEHYDROADIPYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

R HISTIDINE DASH AMMONIA DASH LYASE DASH RXN
name: histidine ammonia-lyase
notes: GENE_ASSOCIATION: ACIAD0574
product: 573999
is: HISTIDINE-AMMONIA-LYASE-RXN
fast: false
reversible: false
is: HISD
reactant: 573987
type: Reaction
product: 574011

599225
stoichiometry: 1.0
species: M C18 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: SpeciesReference

591223
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

607470
stoichiometry: 0.08
species: 570956
type: SpeciesReference

585893
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

594394
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET
type: SpeciesReference

M CPDIM DASH 6112 LBRACKET C RBRACKET
is: CPDIM-6112
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ethylsalicylate
type: Species

612989
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

579645
reactant: 579657
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-glutamine
type: Reaction

608073
stoichiometry: 1.0
species: 570823
type: SpeciesReference

611689
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

605945
stoichiometry: 1.0
species: M CPD DASH 218 LBRACKET C RBRACKET
type: SpeciesReference

604824
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

570511
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: BETAINE_ALDEHYDE
type: Species

R C6 COLON 1 LPAREN C4 RPAREN DASH 3OXOCOA DASH THIOLASE DASH RXN
type: Reaction
product: 610460
fast: false
is: KETOACYLCOATHIOL-RXN
name: 3oxoacyl-coa thiolase (c6:1(c4))
reactant: 610448
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
product: 610472
reversible: true
reactant: 610436

616378
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R PROTOPORGENOXI DASH RXN
is: PROTOPORGENOXI-RXN
notes: GENE_ASSOCIATION:
is: PPPGO
reactant: 616522
reactant: 616534
name: protoporphyrinogen oxidase
product: 616558
type: Reaction
reversible: false
product: 616546
fast: false

R GLY3KIN DASH RXN
product: 590222
type: Reaction
reactant: 590210
notes: GENE_ASSOCIATION: ACIAD2850
name: glycerate kinase
reactant: 590198
product: 590235
fast: false
is: GLYCK
reversible: false
is: GLY3KIN-RXN

R UGD DASH RXN
product: 618478
fast: false
product: 618490
notes: GENE_ASSOCIATION: ACIAD0100 or ACIAD0087 or ACIAD0072
reactant: 618466
is: UGD-RXN
reactant: 618453
reversible: true
type: Reaction
is: UDPGD
reactant: 618441
name: udp-glucose 6-dehydrogenase

603874
stoichiometry: 1.0
species: M UDP DASH AA DASH GLUTAMATE LBRACKET C RBRACKET
type: SpeciesReference

599346
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: SpeciesReference

594454
stoichiometry: 1.0
species: M DETHIOBIOTIN LBRACKET C RBRACKET
type: SpeciesReference

R DETHIOBIOTIN DASH SYN DASH RXN
fast: false
reactant: 594406
name: dethiobiotin synthase
notes: GENE_ASSOCIATION: ACIAD0859
product: 594454
type: Reaction
reactant: 594418
product: 594442
is: DBTS
is: DETHIOBIOTIN-SYN-RXN
reversible: false
product: 594466
reactant: 594430

604235
stoichiometry: 1.0
species: M ADENINE LBRACKET C RBRACKET
type: SpeciesReference

597829
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

610678
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

601138
stoichiometry: 1.0
species: M DIHYDRONEOPTERIN DASH P3 LBRACKET C RBRACKET
type: SpeciesReference

616510
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET
type: SpeciesReference

611845
stoichiometry: 1.0
species: M ACETYL DASH GLU LBRACKET C RBRACKET
type: SpeciesReference

614137
stoichiometry: 1.0
species: M CPD DASH 667 LBRACKET C RBRACKET
type: SpeciesReference

576587
stoichiometry: 1.0
species: M GLC LBRACKET P RBRACKET
type: SpeciesReference

R C10 COLON 0 DASH 3OXOCOA DASH THIOLASE DASH RXN
product: 594056
reactant: 594019
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
product: 594044
reversible: true
is: KAT4
is: KETOACYLCOATHIOL-RXN
name: 3oxoacyl-coa thiolase (c10:0)
type: Reaction
fast: false
reactant: 594032

585049
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

588238
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET
type: SpeciesReference

617079
stoichiometry: 1.0
species: M C16 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

M 4 DASH AMINO DASH 4 DASH DEOXYCHORISMATE LBRACKET C RBRACKET
is: C11355
initial amount: NaN
has only substance units: false
in compartment: 570138
name: 4-amino-4-deoxychorismate
constant: false
initial concentration: NaN
is: 4adcho
is: 4-AMINO-4-DEOXYCHORISMATE
type: Species
boundary condition: false

R 3 DASH HYDROXYISOBUTYRATE DASH DEHYDROGENASE DASH RXN
reactant: 609956
product: 609968
fast: false
notes: GENE_ASSOCIATION: ACIAD0032 or ACIAD2316 or ACIAD1605 or ACIAD3074
type: Reaction
product: 609980
is: 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN
name: 3-hydroxyisobutyrate dehydrogenase
reversible: true
reactant: 609944

593584
stoichiometry: 1.0
species: M C12 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: SpeciesReference

573615
stoichiometry: 1.0
species: M GLUTARYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

609171
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

612628
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

586554
reactant: 586566
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of cis-octadec-9-enoate
type: Reaction

592753
reactant: 592765
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-phenylalanine
type: Reaction

603970
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

593078
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

603332
stoichiometry: 1.0
species: M GLYCOLLATE LBRACKET C RBRACKET
type: SpeciesReference

597549
stoichiometry: 1.0
species: M MALONYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

578621
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

580942
stoichiometry: 1.0
species: M C12 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: SpeciesReference

M GLY LBRACKET C RBRACKET
has only substance units: false
initial amount: NaN
is: C00037
boundary condition: false
type: Species
is: gly
in compartment: 570138
is: GLY
constant: false
initial concentration: NaN
name: glycine

602298
stoichiometry: 1.0
species: M RED DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
type: SpeciesReference

600103
stoichiometry: 1.0
species: M NIACINE LBRACKET C RBRACKET
type: SpeciesReference

576695
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET
type: SpeciesReference

575190
stoichiometry: 1.0
species: M DEOXYADENOSINE LBRACKET C RBRACKET
type: SpeciesReference

609183
stoichiometry: 1.0
species: M DATP LBRACKET C RBRACKET
type: SpeciesReference

592692
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET E RBRACKET
type: SpeciesReference

581424
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

M ADENOSINE LBRACKET C RBRACKET
is: adn
constant: false
initial amount: NaN
boundary condition: false
in compartment: 570138
has only substance units: false
type: Species
initial concentration: NaN
is: ADENOSINE
is: C00212
name: adenosine

R ACETOOHBUTSYN DASH RXN
reactant: 602804
fast: false
is: ACETOOHBUTSYN-RXN
product: 602816
type: Reaction
product: 602828
name: acetolactate synthase
notes: GENE_ASSOCIATION: ( ACIAD0999 or ACIAD3104 ) and ACIAD3103
reversible: false
is: ACHBS
reactant: 602792

605765
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH GLUTARATE
reversible: true
fast: false
notes: GENE_ASSOCIATION: ACIAD1694
product: 600223
product: 600235
reactant: 600211
is: TRANS-RXNIM-5911
reactant: 600199
name: transport of glutarate [extraorganism;cytosol](secondary symport)
type: Reaction

M PRPP LBRACKET C RBRACKET
initial amount: NaN
in compartment: 570138
type: Species
has only substance units: false
name: prpp
is: prpp
boundary condition: false
constant: false
initial concentration: NaN
is: C00119
is: PRPP

599117
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R ACETATE DASH DASH COA DASH LIGASE DASH RXN
product: 607760
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1606 or ACIAD1611 or ACIAD3475
product: 607772
name: acetate--coa ligase
reactant: 607736
product: 607748
is: ACS
reversible: false
reactant: 607724
reactant: 607712
is: ACETATE--COA-LIGASE-RXN
fast: false

576081
stoichiometry: 1.0
species: M C6 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

585749
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

584425
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

575238
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

582230
stoichiometry: 1.0
species: M PQQ LBRACKET P RBRACKET
type: SpeciesReference

M 1 DASH 2 DASH CIS DASH DI DASH OH DASH BENZOATE LBRACKET C RBRACKET
is: 1-2-CIS-DI-OH-BENZOATE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-1,2-dihydroxybenzoate
type: Species

M CPD DASH 335 LBRACKET C RBRACKET
initial amount: NaN
initial concentration: NaN
is: bhb
boundary condition: false
is: CPD-335
constant: false
in compartment: 570138
type: Species
name: (r)-3-hydroxybutanoate
has only substance units: false
is: C01089

608519
stoichiometry: 4.2
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

577695
stoichiometry: 1.0
species: M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET
type: SpeciesReference

596550
stoichiometry: 1.0
species: M RIBOSE LBRACKET C RBRACKET
type: SpeciesReference

583375
stoichiometry: 1.0
species: M GLY LBRACKET C RBRACKET
type: SpeciesReference

570258
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ACYL-SN-GLYCEROL-3P_TAG
type: Species

615752
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

611533
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

617634
stoichiometry: 1.0
species: M CTP LBRACKET C RBRACKET
type: SpeciesReference

610918
stoichiometry: 0.2
species: 570847
type: SpeciesReference

R C18 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
name: enoyl-coa hydratase (c18:0)
is: ENOYL-COA-HYDRAT-RXN
type: Reaction
fast: false
reversible: false
reactant: 599201
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
product: 599213
is: ECOAH8
reactant: 599189

616947
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

R UDPACYLGLCNACDEACETYL DASH RXN
type: Reaction
reversible: false
is: UHGADA
reactant: 579392
product: 579416
product: 579404
fast: false
reactant: 579380
is: UDPACYLGLCNACDEACETYL-RXN
notes: GENE_ASSOCIATION: ACIAD3510
name: udp-3-o-acyl-n-acetylglucosamine deacetylase

570739
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: BUTYRIC_ACID
type: Species

570944
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: L-GLUTAMATE_GAMMA-SEMIALDEHYDE
type: Species

574794
stoichiometry: 1.0
species: M GLN LBRACKET E RBRACKET
type: SpeciesReference

604921
stoichiometry: 1.0
species: M SUCC DASH S DASH ALD LBRACKET C RBRACKET
type: SpeciesReference

590259
stoichiometry: 1.0
species: M 2 DASH D DASH THREO DASH HYDROXY DASH 3 DASH CARBOXY DASH ISOCAPROATE LBRACKET C RBRACKET
type: SpeciesReference

M PURINE LBRACKET C RBRACKET
has only substance units: false
initial amount: NaN
is: C15587
boundary condition: false
type: Species
in compartment: 570138
name: purine
initial concentration: NaN
constant: false
is: PURINE

608628
stoichiometry: 0.02
species: M CYS DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

606786
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

570895
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 4-carboxy-3-oxobutanoyl-coa
type: Species

R 4 DASH CARBOXYMUCONOLACTONE DASH DECARBOXYLASE DASH RXN
product: 575334
product: 575322
reactant: 575310
notes: GENE_ASSOCIATION: ACIAD1710
is: 4-CARBOXYMUCONOLACTONE-DECARBOXYLASE-RXN
fast: false
reversible: false
name: 4-carboxymuconolactone decarboxylase
type: Reaction

579380
stoichiometry: 1.0
species: M UDP DASH OHMYR DASH ACETYLGLUCOSAMINE LBRACKET C RBRACKET
type: SpeciesReference

577816
stoichiometry: 1.0
species: M CDP LBRACKET C RBRACKET
type: SpeciesReference

615236
stoichiometry: 1.0
species: M 4 DASH P DASH PANTOTHENATE LBRACKET C RBRACKET
type: SpeciesReference

581123
stoichiometry: 1.0
species: M C18 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

571642
stoichiometry: 1.0
species: M DGDP LBRACKET C RBRACKET
type: SpeciesReference

M GMP LBRACKET C RBRACKET
is: C00144
name: gmp
is: GMP
boundary condition: false
type: Species
initial concentration: NaN
in compartment: 570138
is: gmp
constant: false
initial amount: NaN
has only substance units: false

590705
stoichiometry: 1.0
species: M VANILLATE LBRACKET E RBRACKET
type: SpeciesReference

574071
stoichiometry: 1.0
species: M C8 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

614286
stoichiometry: 1.0
species: M THIAMINE DASH P LBRACKET C RBRACKET
type: SpeciesReference

583519
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

M C12 COLON 0 DASH COA LBRACKET C RBRACKET
initial amount: NaN
constant: false
initial concentration: NaN
name: dodecanoyl-coa
is: C01832
has only substance units: false
boundary condition: false
is: ddcacoa
type: Species
is: LAUROYLCOA-CPD
in compartment: 570138

573699
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET
type: SpeciesReference

R MALATE DASH DEH DASH RXN
reversible: true
type: Reaction
is: MALATE-DEH-RXN
notes: GENE_ASSOCIATION: ACIAD3155
reactant: 598537
reactant: 598549
name: malate dehydrogenase
product: 598561
product: 598573
fast: false
is: MDH

574313
stoichiometry: 1.0
species: M C16 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

612351
stoichiometry: 1.0
species: M D DASH GLUCOSAMINE DASH 6 DASH P LBRACKET C RBRACKET
type: SpeciesReference

587949
stoichiometry: 1.0
species: M TAURINE LBRACKET E RBRACKET
type: SpeciesReference

585314
stoichiometry: 1.0
species: M MALONATE LBRACKET C RBRACKET
type: SpeciesReference

613242
stoichiometry: 1.0
species: M C16 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

R C16 COLON 0 DASH COA DASH DEHYDROGENASE DASH RXN
name: acyl-coa dehydrogenase (c16:0)
reactant: 613242
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566
reactant: 613231
fast: false
product: 613266
product: 613254
type: Reaction
is: ACOAD7f
reversible: false
is: ACYLCOADEHYDROG-RXN

M PRO LBRACKET E RBRACKET
initial amount: NaN
constant: false
boundary condition: false
initial concentration: NaN
is: PRO
in compartment: 570126
name: l-proline
type: Species
has only substance units: false
is: pro-L
is: C00148

598224
stoichiometry: 1.0
species: M CPD DASH 1301 LBRACKET C RBRACKET
type: SpeciesReference

587613
stoichiometry: 1.0
species: M URACIL LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 622 LBRACKET C RBRACKET
type: Species
boundary condition: false
name: 2-methylcitrate
initial concentration: NaN
constant: false
is: 2mcit
initial amount: NaN
has only substance units: false
in compartment: 570138
is: C02225
is: CPD-622

602888
stoichiometry: 1.0
species: M C18 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

588706
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

584025
stoichiometry: 1.0
species: M 5 COMMA 10 DASH METHENYL DASH THF LBRACKET C RBRACKET
type: SpeciesReference

606017
stoichiometry: 1.0
species: M WATER LBRACKET P RBRACKET
type: SpeciesReference

579452
stoichiometry: 1.0
species: M 6 DASH CARBOXYHEX DASH 2 DASH ENOYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M C12 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
has only substance units: false
boundary condition: false
is: C05262
name: 3-hydroxydodecanoyl-coa
constant: false
is: 3hddcoa
initial concentration: NaN
type: Species
in compartment: 570138
initial amount: NaN

R TRANS DASH RXN DASH TAURINE
product: 606630
reactant: 606594
type: Reaction
is: 3.6.3.36-RXN
name: transport of taurine [extraorganism;cytosol](primary active atp)
reversible: false
reactant: 606582
product: 606606
reactant: 606570
fast: false
is: TAURabcpp
product: 606618
notes: GENE_ASSOCIATION: ACIAD1914 and ACIAD1463 and ACIAD1465 and ACIAD1464 or ACIAD1523 and ACIAD1524 and ACIAD1525 and ACIAD1526 or ACIAD1586 and ACIAD1587 and ACIAD1593 and ACIAD1601

613616
stoichiometry: 1.0
species: M SER LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 205 LBRACKET C RBRACKET
name: pimelate
has only substance units: false
type: Species
constant: false
is: C02656
is: pime
in compartment: 570138
is: CPD-205
initial concentration: NaN
initial amount: NaN
boundary condition: false

585193
stoichiometry: 1.0
species: 570511
type: SpeciesReference

578008
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET
type: SpeciesReference

614730
reactant: 614743
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of adipate
type: Reaction

615596
stoichiometry: 1.0
species: 570186
type: SpeciesReference

609740
stoichiometry: 1.0
species: 570475
type: SpeciesReference

R R221 DASH RXN
fast: false
product: 579211
is: R221-RXN
reactant: 579175
product: 579199
reversible: true
reactant: 579187
type: Reaction
notes: GENE_ASSOCIATION:
name: octanol dehydrogenase

M PROPIONYL DASH COA LBRACKET C RBRACKET
initial amount: NaN
boundary condition: false
constant: false
name: propionyl-coa
has only substance units: false
is: ppcoa
type: Species
initial concentration: NaN
in compartment: 570138
is: PROPIONYL-COA
is: C00100

R DALADEHYDROG DASH RXN
type: Reaction
product: 573217
reactant: 573193
reversible: true
product: 573205
is: DALADEHYDROG-RXN
reactant: 573169
notes: GENE_ASSOCIATION: ACIAD1998 or ACIAD0922 or ACIAD0115
is: DAAD
reactant: 573181
name: d-alanine dehydrogenase
product: 573230
fast: false

597296
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

599982
stoichiometry: 1.0
species: M C8 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

596767
stoichiometry: 1.0
species: M CARBOXYPHENYLAMINO DASH DEOXYRIBULOSE DASH P LBRACKET C RBRACKET
type: SpeciesReference

584977
stoichiometry: 1.0
species: 570956
type: SpeciesReference

584185
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

R PHOSGLYPHOS DASH RXN
reactant: 597260
reversible: true
name: phosphoglycerate kinase
fast: false
product: 597296
product: 597284
reactant: 597272
is: PHOSGLYPHOS-RXN
type: Reaction
is: PGK
notes: GENE_ASSOCIATION: ACIAD1927

588430
stoichiometry: 1.0
species: M CIT LBRACKET C RBRACKET
type: SpeciesReference

M SER DASH TRNAS LBRACKET C RBRACKET
is: C01650
is: trnaser
boundary condition: false
in compartment: 570138
constant: false
has only substance units: false
initial concentration: NaN
is: SER-TRNAS
initial amount: NaN
name: serine trna
type: Species

616594
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

583471
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

588574
stoichiometry: 1.0
species: M UROPORPHYRINOGEN DASH III LBRACKET C RBRACKET
type: SpeciesReference

573339
stoichiometry: 1.0
species: M GLYCEROL DASH 3P LBRACKET C RBRACKET
type: SpeciesReference

R C6 COLON 1 LPAREN C4 RPAREN DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
product: 587036
reactant: 587025
reactant: 587013
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
is: ENOYL-COA-HYDRAT-RXN
fast: false
reversible: false
name: enoyl-coa hydratase (c6:1(c4))
type: Reaction

582654
stoichiometry: 1.0
species: M CHARGED DASH LYS DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

574180
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET
type: SpeciesReference

605813
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

606341
stoichiometry: 1.0
species: M N2 DASH SUCCINYLGLUTAMIC DASH SEMIALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

570595
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-oxooctadec-9-enoyl-acp
type: Species

595841
stoichiometry: 1.0
species: M 3 DASH OXOADIPATE DASH ENOL DASH LACTONE LBRACKET C RBRACKET
type: SpeciesReference

611605
stoichiometry: 1.0
species: M CPD DASH 3623 LBRACKET C RBRACKET
type: SpeciesReference

582581
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

M PROPIONALDOXIME LBRACKET C RBRACKET
is: CPDIM-6123
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: propane aldoxime
type: Species

M SUCC DASH S DASH ALD LBRACKET C RBRACKET
is: SUCC-S-ALD
initial amount: NaN
in compartment: 570138
constant: false
boundary condition: false
is: C00232
name: succinate semialdehyde
is: sucsal
has only substance units: false
initial concentration: NaN
type: Species

R C12 COLON 0 DASH 2ENOYLACP DASH REDUCTASE DASH RXN
fast: false
product: 594792
notes: GENE_ASSOCIATION: ACIAD3116
name: 2enoyl-acp reductase (c12:0)
type: Reaction
reversible: false
product: 594804
reactant: 594768
is: ENOYL-ACP-REDUCT-NADH-RXN
is: EAR120x
reactant: 594780

609449
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

587553
stoichiometry: 1.0
species: M NITRITE LBRACKET C RBRACKET
type: SpeciesReference

615512
stoichiometry: 1.0
species: M LIPID DASH IV DASH A LBRACKET C RBRACKET
type: SpeciesReference

598513
stoichiometry: 1.0
species: M GLYOX LBRACKET C RBRACKET
type: SpeciesReference

607507
stoichiometry: 0.08
species: M SIROHEME LBRACKET C RBRACKET
type: SpeciesReference

585338
stoichiometry: 1.0
species: M FORMATE LBRACKET C RBRACKET
type: SpeciesReference

601779
reactant: 601791
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of chlorogenate
type: Reaction

607736
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

594539
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

R C12 COLON 0 DASH COA DASH THIOLASE DASH RXN
reversible: false
fast: false
product: 579621
name: acyl-coa thiolase (c12:0)
is: FACOAE120
is: THIOESTER-RXN
reactant: 579597
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
reactant: 579609
product: 579633
type: Reaction

R DIAMINOPIMDECARB DASH RXN
product: 603561
fast: false
notes: GENE_ASSOCIATION: ACIAD2660
name: diaminopimelate decarboxylase
reversible: false
reactant: 603537
type: Reaction
product: 603549
is: DAPDC
is: DIAMINOPIMDECARB-RXN

584533
stoichiometry: 1.0
species: M L DASH LACTATE LBRACKET E RBRACKET
type: SpeciesReference

604174
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

R GTP DASH PYROPHOSPHATASE DASH RXN
product: 618695
type: Reaction
is: RXNIM-6224
notes: GENE_ASSOCIATION: ACIAD3065
reactant: 618683
name: gtp pyrophosphorylase
product: 618707
is: NTPP2
reactant: 618671
fast: false
reversible: false

607844
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R PROTOCATECHUATE DASH 3 COMMA 4 DASH DIOXYGENASE DASH RXN
product: 581616
reactant: 581604
reactant: 581592
notes: GENE_ASSOCIATION: ACIAD1711 and ACIAD1712
is: |PROTOCATECHUATE-3,4-DIOXYGENASE-RXN|
fast: false
reversible: false
name: protocatechuate 3,4-dioxygenase
type: Reaction

R PDXJ DASH RXN
reversible: true
reactant: 584329
notes: GENE_ASSOCIATION: ACIAD2577
is: PDXJ-RXN
product: 584341
fast: false
is: PDX5PS
product: 584365
product: 584353
reactant: 584317
name: pyridoxine 5'-phosphate synthase
type: Reaction

618875
stoichiometry: 1.0
species: M UREA LBRACKET E RBRACKET
type: SpeciesReference

R CYTDEAM DASH RXN
product: 584077
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0137
is: CSND
fast: false
name: cytosine deaminase
reactant: 584064
reactant: 584051
reversible: false
product: 584089
is: CYTDEAM-RXN

583267
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

576009
reactant: 576021
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of urea
type: Reaction

R GLUTAMIDOTRANS DASH RXN
reversible: false
type: Reaction
is: IG3PS
reactant: 577394
product: 577431
product: 577418
is: GLUTAMIDOTRANS-RXN
notes: GENE_ASSOCIATION: ACIAD3404 and ACIAD3396
name: imidazole glycerol phosphate synthase
product: 577406
reactant: 577382
fast: false

R 1 PERIOD 2 PERIOD 1 PERIOD 27 DASH RXN
reversible: false
type: Reaction
reactant: 602695
name: methylmalonate-semialdehyde dehydrogenase (acylating)
reactant: 602683
is: 1.2.1.27-RXN
product: 602708
reactant: 602671
notes: GENE_ASSOCIATION: ACIAD1604
fast: false
product: 602732
product: 602720

601427
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

590813
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET E RBRACKET
type: SpeciesReference

590065
stoichiometry: 1.0
species: M HISTIDINOL LBRACKET C RBRACKET
type: SpeciesReference

590921
stoichiometry: 1.0
species: M AMINO DASH RIBOSYLAMINO DASH 1H DASH 3H DASH PYR DASH DIONE LBRACKET C RBRACKET
type: SpeciesReference

R 2 DASH NITROPROPANE DASH DIOXYGENASE DASH RXN
type: Reaction
fast: false
product: 606329
name: 2-nitropropane dioxygenase
reactant: 606293
reversible: false
product: 606317
reactant: 606305
notes: GENE_ASSOCIATION: ACIAD1570
is: 2-NITROPROPANE-DIOXYGENASE-RXN

R H2PTEROATESYNTH DASH RXN
product: 591211
notes: GENE_ASSOCIATION: ACIAD2852
type: Reaction
fast: false
reversible: false
is: H2PTEROATESYNTH-RXN
reactant: 591199
name: dihydropteroate synthase
is: DHPS2
product: 591223
reactant: 591187

M 7 COMMA 8 DASH DIHYDROPTEROATE LBRACKET C RBRACKET
constant: false
is: C00921
name: 7,8-dihydropteroate
is: 7,8-dihydropteroate
is: dhpt
type: Species
initial concentration: NaN
initial amount: NaN
has only substance units: false
boundary condition: false
in compartment: 570138

590101
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

608133
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

R TRANSALDOL DASH RXN
product: 574409
reactant: 574385
reactant: 574373
type: Reaction
fast: false
is: TRANSALDOL-RXN
is: TALA
product: 574397
name: transaldolase
reversible: true
notes: GENE_ASSOCIATION: ACIAD1980

581280
stoichiometry: 1.0
species: M C18 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

605547
stoichiometry: 1.0
species: M MET LBRACKET C RBRACKET
type: SpeciesReference

R LPAREN DEOXY RPAREN ADENYLATE DASH KINASE DASH RXN
fast: false
is: |(DEOXY)ADENYLATE-KINASE-RXN|
name: (deoxy)adenylate kinase
reactant: 608967
reactant: 608955
is: DADK
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1105
reversible: true
product: 608991
product: 608979

613133
stoichiometry: 0.717
species: M C16 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

597933
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

598164
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH DEOXYINOSINE
reversible: false
name: transport of deoxyinosine [extraorganism;cytosol](secondary symport)
is: TRANS-RXN-108E
notes: GENE_ASSOCIATION: ACIAD2389
fast: false
reactant: 580250
product: 580274
reactant: 580262
product: 580286
is: DINSt2pp
type: Reaction

604452
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

M DEAMIDO DASH NAD LBRACKET C RBRACKET
name: deamido-nad
in compartment: 570138
initial amount: NaN
has only substance units: false
constant: false
is: DEAMIDO-NAD
is: dnad
is: C00857
initial concentration: NaN
type: Species
boundary condition: false

615860
reactant: 615872
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: exchange flux of succinate
type: Reaction

M C10 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
is: 3hdcoa
in compartment: 570138
name: 3-hydroxydecanoyl-coa
is: C05264
initial amount: NaN
constant: false
initial concentration: NaN
boundary condition: false
has only substance units: false
type: Species

M BETAINE LBRACKET E RBRACKET
is: C00719
constant: false
in compartment: 570126
has only substance units: false
is: glyb
name: betaine
initial concentration: NaN
boundary condition: false
initial amount: NaN
is: BETAINE
type: Species

M CPD DASH 218 LBRACKET C RBRACKET
is: C00855
initial amount: NaN
is: CPD-218
type: Species
is: met-D
in compartment: 570138
constant: false
has only substance units: false
initial concentration: NaN
name: d-methionine
boundary condition: false

R C18 COLON 0 DASH COA DASH THIOLASE DASH RXN
product: 602924
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
reactant: 602888
fast: false
reactant: 602900
is: FACOAE180
is: THIOESTER-RXN
reversible: false
name: acyl-coa thiolase (c18:0)
product: 602912

584365
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

608736
stoichiometry: 0.02
species: M MET DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

616730
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

M XANTHINE LBRACKET E RBRACKET
in compartment: 570126
has only substance units: false
constant: false
type: Species
initial amount: NaN
is: xan
name: xanthine
is: C00385
is: XANTHINE
boundary condition: false
initial concentration: NaN

614840
stoichiometry: 1.0
species: M SUC DASH COA LBRACKET C RBRACKET
type: SpeciesReference

613931
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET E RBRACKET
type: SpeciesReference

578116
stoichiometry: 1.0
species: M XYLULOSE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

613037
stoichiometry: 1.0
species: 570883
type: SpeciesReference

602069
stoichiometry: 1.0
species: M SULFATE LBRACKET E RBRACKET
type: SpeciesReference

R GABATRANSAM DASH RXN
reversible: true
reactant: 602852
type: Reaction
product: 602876
fast: false
is: ABTA
is: GABATRANSAM-RXN
name: 4-aminobutyrate aminotransferase
reactant: 602840
product: 602864
notes: GENE_ASSOCIATION: ACIAD3446

M N2 DASH SUCCINYLGLUTAMATE LBRACKET C RBRACKET
in compartment: 570138
is: C05931
constant: false
initial concentration: NaN
has only substance units: false
initial amount: NaN
type: Species
boundary condition: false
name: n2-succinylglutamate
is: sucglu
is: N2-SUCCINYLGLUTAMATE

583580
stoichiometry: 1.0
species: 570426
type: SpeciesReference

602732
stoichiometry: 1.0
species: M PROPIONYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

585677
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

571978
stoichiometry: 1.0
species: M C16 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

R TREHALOSEPHOSPHA DASH RXN
product: 611363
reactant: 611327
notes: GENE_ASSOCIATION: ACIAD1775
fast: false
name: trehalose-phosphatase
reversible: false
reactant: 611339
type: Reaction
is: TRE6PP
product: 611351
is: TREHALOSEPHOSPHA-RXN

615668
stoichiometry: 1.0
species: M GTP LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH C12 COLON 0
reactant: 592186
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
product: 592210
is: TRANS-RXNIM-5726
name: transport of dodecanoate [extraorganism;cytosol](secondary symport)
fast: false
product: 592222
type: Reaction
reversible: true
reactant: 592198

M GLUCONATE LBRACKET P RBRACKET
is: glcn
boundary condition: false
is: C00257
initial amount: NaN
initial concentration: NaN
constant: false
name: gluconate
in compartment: 570114
is: GLUCONATE
type: Species
has only substance units: false

M N2 DASH SUCCINYLGLUTAMIC DASH SEMIALDEHYDE LBRACKET C RBRACKET
is: N2-SUCCINYLGLUTAMIC-SEMIALDEHYDE
in compartment: 570138
is: sucgsa
initial concentration: NaN
type: Species
constant: false
initial amount: NaN
boundary condition: false
name: n2-succinylglutamic-semialdehyde
is: C05932
has only substance units: false

M GLUTATHIONE LBRACKET C RBRACKET
has only substance units: false
type: Species
name: reduced glutathione
is: GLUTATHIONE
boundary condition: false
constant: false
is: C00051
in compartment: 570138
initial amount: NaN
initial concentration: NaN
is: gthrd

599526
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

581833
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R GLUCARDEHYDRA DASH RXN
is: GLCRD
fast: false
product: 573109
name: glucarate dehydratase
type: Reaction
reactant: 573097
reversible: false
is: GLUCARDEHYDRA-RXN
product: 573121
notes: GENE_ASSOCIATION: ACIAD0128

584869
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET
type: SpeciesReference

573133
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

606426
stoichiometry: 1.0
species: M CPD DASH 3623 LBRACKET E RBRACKET
type: SpeciesReference

612568
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET
type: SpeciesReference

605607
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

603766
stoichiometry: 1.0
species: M 3 DASH HYDROXYADIPYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

571750
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

592970
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET
type: SpeciesReference

M C16 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
in compartment: 570138
is: tpalm2eACP
constant: false
type: Species
is: C05763
initial concentration: NaN
has only substance units: false
boundary condition: false
initial amount: NaN
name: trans-hexadec-2-enoyl-acp

R TRANS DASH RXN DASH URIDINE
is: TRANS-RXN-108I
notes: GENE_ASSOCIATION: ACIAD2389
reactant: 572699
product: 572735
product: 572723
fast: false
is: URIt2pp
type: Reaction
reactant: 572711
name: transport of uridine [extraorganism;cytosol](secondary symport)
reversible: false

595997
stoichiometry: 1.0
species: M IMP LBRACKET C RBRACKET
type: SpeciesReference

R ACYLACYLTRAN DASH RXN
reversible: false
fast: false
product: 614210
is: EDTXS1
type: Reaction
reactant: 614198
product: 614223
is: EDTXS2
is: LAUROYLACYLTRAN-RXN
reactant: 614186
notes: GENE_ASSOCIATION: ACIAD2638 or ACIAD0484
name: acyl acyltransferase
is: MYRISTOYLACYLTRAN-RXN

M HISTIDINAL LBRACKET C RBRACKET
is: HISTIDINAL
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: histidinal
type: Species

606125
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET
type: SpeciesReference

570487
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: AFATTYACID_TAG
type: Species

602671
stoichiometry: 1.0
species: M CH3 DASH MALONATE DASH S DASH ALD LBRACKET C RBRACKET
type: SpeciesReference

617972
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

589800
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH FORMIMINO DASH AICAR DASH P LBRACKET C RBRACKET
type: SpeciesReference

601622
stoichiometry: 1.0
species: 570667
type: SpeciesReference

596659
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

M C12 COLON 0 DASH ACP LBRACKET C RBRACKET
has only substance units: false
boundary condition: false
type: Species
is: ddcaACP
constant: false
is: LAUROYL-ACP
initial amount: NaN
name: dodecanoyl-acp
initial concentration: NaN
is: C05223
in compartment: 570138

M DETHIOBIOTIN LBRACKET C RBRACKET
type: Species
has only substance units: false
is: DETHIOBIOTIN
initial amount: NaN
in compartment: 570138
boundary condition: false
is: dtbt
name: dethiobiotin
initial concentration: NaN
constant: false
is: C01909

573915
reactant: 573927
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-asparagine
type: Reaction

M OX DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
constant: false
type: Species
boundary condition: false
has only substance units: false
name: oxidized thioredoxin
initial concentration: NaN
is: OX-THIOREDOXIN-MONOMER
is: trdox
is: C00343
initial amount: NaN
in compartment: 570138

613688
stoichiometry: 1.0
species: 570523
type: SpeciesReference

R PYRUVDEH DASH RXN
is: PDH
reactant: 614418
is: PYRUVDEH-RXN
notes: GENE_ASSOCIATION: ACIAD3507 and ACIAD3506 and ACIAD2874
name: pyruvate dehydrogenase
reversible: false
product: 614457
fast: false
reactant: 614444
product: 614470
reactant: 614431
product: 614483
type: Reaction

612556
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

607580
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

574590
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

591560
stoichiometry: 1.0
species: M C12 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: SpeciesReference

572303
stoichiometry: 1.0
species: M INOSINE LBRACKET C RBRACKET
type: SpeciesReference

618020
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

570366
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: PEPTIDO_W
type: Species

R TRANS DASH RXN DASH 27
notes: GENE_ASSOCIATION: ACIAD0223
type: Reaction
reactant: 611098
product: 611110
reactant: 611086
fast: false
is: SKMt2pp
reversible: false
name: transport of shikimate [periplasm;cytosol](secondary symport)
product: 611122
is: TRANS-RXN-27

R ALCOHOL DASH DEHYDROG DASH RXN
fast: false
reversible: true
reactant: 598695
reactant: 598707
is: ALCOHOL-DEHYDROG-RXN
type: Reaction
product: 598731
product: 598719
is: ALCD2x
name: ethanol dehydroganase
notes: GENE_ASSOCIATION: ACIAD3616 or ACIAD2929 or ACIAD2015 or ACIAD3339 or ACIAD1950

585966
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET
type: SpeciesReference

596442
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1949107276#R_C10_COLON_0_DASH_CARBOXY2ENOYLCOA_DASH_HYDRATASE_DASH_RXN
product: 600139
reactant: 600127
reactant: 600115
notes: GENE_ASSOCIATION: ACIAD1692
is: RXNIM-6201
fast: false
reversible: false
name: dicarboxylate enoyl-coa hydratase (c10:0)
type: Reaction

M DUTP LBRACKET C RBRACKET
initial amount: NaN
has only substance units: false
is: C00460
in compartment: 570138
type: Species
initial concentration: NaN
is: DUTP
boundary condition: false
constant: false
is: dutp
name: dutp

596394
stoichiometry: 1.0
species: M SUBERATE LBRACKET C RBRACKET
type: SpeciesReference

R C12 COLON 0 DASH COATRANSFERASE DASH RXN
name: acyl coa transferase (c12:0)
is: ACYLCOASYN-RXN
reactant: 600247
product: 600295
product: 600283
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
reactant: 600271
fast: false
is: FACOAL120t2pp
reactant: 600259
product: 600307

597712
reactant: 597725
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of decanoate
type: Reaction

589896
stoichiometry: 1.0
species: M NA PLUS LBRACKET C RBRACKET
type: SpeciesReference

610160
stoichiometry: 1.0
species: M C14 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: SpeciesReference

M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET
initial concentration: NaN
in compartment: 570138
is: S-ADENOSYLMETHIONINE
has only substance units: false
constant: false
is: amet
name: s-adenosyl-l-methionine
initial amount: NaN
boundary condition: false
is: C00019
type: Species

R PANTEPADENYLYLTRAN DASH RXN
product: 585821
type: Reaction
reactant: 585785
fast: false
is: PTPATi
product: 585809
reversible: true
notes: GENE_ASSOCIATION: ACIAD2893
reactant: 585797
name: pantetheine-phosphate adenylyltransferase
is: PANTEPADENYLYLTRAN-RXN

612832
stoichiometry: 1.0
species: M 3 DASH KETOBUTYRATE LBRACKET C RBRACKET
type: SpeciesReference

580250
stoichiometry: 1.0
species: M DEOXYINOSINE LBRACKET E RBRACKET
type: SpeciesReference

R C6 COLON 0 DASH COATRANSFERASE DASH RXN
product: 576141
reactant: 576105
product: 576117
is: FACOAL60t2pp
fast: false
type: Reaction
product: 576129
reversible: false
is: ACYLCOASYN-RXN
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
reactant: 576081
name: acyl coa transferase (c6:0)
reactant: 576093

606233
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R 3 DASH OCTAPRENYL DASH 4 DASH OHBENZOATE DASH DECARBOX DASH RXN
fast: false
name: octaprenyl-hydroxybenzoate decarboxylase
product: 578970
reactant: 578958
is: OPHBDC
product: 578982
is: 3-OCTAPRENYL-4-OHBENZOATE-DECARBOX-RXN
reversible: false
type: Reaction
notes: GENE_ASSOCIATION:

570402
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: NICOTINAMIDE_NUCLEOTIDE
type: Species

570679
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 7-carboxy-3-hydroxyheptanoyl-coa
type: Species

R TRANS DASH RXN DASH PI DASH ABC
product: 581942
reversible: false
notes: GENE_ASSOCIATION: ACIAD1212 and ACIAD1213 and ACIAD1214 and ACIAD1215
name: transport of phosphate [extraorganism;cytosol](secondary antiport)
reactant: 581918
is: PIuabcpp
fast: false
reactant: 581906
is: 3.6.3.27-RXN
product: 581930
type: Reaction
reactant: 581894

R RXN DASH 1241
product: 578634
reactant: 578597
notes: GENE_ASSOCIATION: ACIAD0503
reactant: 578585
fast: false
is: RXN-1241
product: 578621
reactant: 578609
reversible: true
name: coniferyl-aldehyde dehydrogenase
type: Reaction

612002
stoichiometry: 1.0
species: M CPD DASH 622 LBRACKET C RBRACKET
type: SpeciesReference

599454
stoichiometry: 1.0
species: M 2 DASH 3 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET
type: SpeciesReference

611303
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

602924
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

R C8 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
reversible: false
name: hydroxyacyl-coa dehydrogenase (c8:0)
is: OHACYL-COA-DEHYDROG-RXN
is: HACD3i
reactant: 609655
product: 609679
reactant: 609667
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
product: 609691
type: Reaction
fast: false

M OCTANOL LBRACKET C RBRACKET
type: Species
name: octanol
in compartment: 570138
initial concentration: NaN
initial amount: NaN
has only substance units: false
is: OCTANOL
constant: false
boundary condition: false
is: C00756

589956
stoichiometry: 1.0
species: M C5 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

612086
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

600199
stoichiometry: 1.0
species: M GLUTARATE LBRACKET E RBRACKET
type: SpeciesReference

581604
stoichiometry: 1.0
species: M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET
type: SpeciesReference

R SARCOX DASH RXN
is: SARCOX
type: Reaction
reactant: 606077
is: SARCOX-RXN
reactant: 606089
fast: false
notes: GENE_ASSOCIATION: ACIAD2549 and ACIAD2550 and ACIAD2551 and ACIAD2552
reversible: false
reactant: 606065
product: 606113
name: sarcosine oxidase
product: 606101
product: 606125

598851
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

587048
stoichiometry: 1.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET
type: SpeciesReference

616486
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

585266
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET
type: SpeciesReference

610172
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

600319
stoichiometry: 1.0
species: M RIBOSE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

611954
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M LEU LBRACKET C RBRACKET
is: C00123
type: Species
in compartment: 570138
boundary condition: false
constant: false
is: LEU
initial amount: NaN
initial concentration: NaN
name: l-leucine
has only substance units: false
is: leu-L

598441
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

610894
fast: false
product: 611062
reactant: 610990
reactant: 610930
product: 611074
reactant: 611026
reactant: 610978
reactant: 610906
reactant: 611050
notes: GENE_ASSOCIATION:
type: Reaction
reactant: 610942
reactant: 611002
reactant: 611038
name: overall biomass assembly
reactant: 610918
reactant: 610966
reactant: 610954
reversible: false
reactant: 611014

603440
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

579861
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

R GMKALT DASH RXN
reactant: 615392
is: DGK1
product: 615416
reactant: 615404
is: GMKALT-RXN
notes: GENE_ASSOCIATION: ACIAD3324
product: 615428
reversible: false
type: Reaction
name: dgmp kinase
fast: false

610220
stoichiometry: 2.0
species: M FORMATE LBRACKET C RBRACKET
type: SpeciesReference

572988
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

591379
product: 591427
reactant: 591415
reactant: 591403
reactant: 591391
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: generic acyl-coa of wax assembly
type: Reaction

586182
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R KDO DASH 8PSYNTH DASH RXN
reactant: 576948
is: KDO-8PSYNTH-RXN
fast: false
name: 2-dehydro-3-deoxyphosphooctonate aldolase
notes: GENE_ASSOCIATION: ACIAD2002
is: KDOPS
reactant: 576924
product: 576972
product: 576960
reversible: false
reactant: 576936
type: Reaction

608495
stoichiometry: 0.05
species: M CHARGED DASH THR DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

R FAD DASH UBIQUINONE DASH RXN
product: 607350
notes: GENE_ASSOCIATION:
reactant: 607326
reversible: false
product: 607338
is: SUCD4
type: Reaction
reactant: 607314
name: fad oxidation
fast: false

582882
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

580502
stoichiometry: 1.0
species: M UREA LBRACKET C RBRACKET
type: SpeciesReference

R C6 COLON 0 DASH CARBOXYCOA DASH DEHYDROGENASE DASH RXN
name: dicarboxylate acyl-coa dehydrogenase (c6:0)
product: 614366
reversible: false
reactant: 614338
is: RXNIM-6199
product: 614379
type: Reaction
fast: false
notes: GENE_ASSOCIATION: ACIAD1693
reactant: 614352

610786
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

582918
stoichiometry: 1.0
species: M ARG LBRACKET C RBRACKET
type: SpeciesReference

583051
stoichiometry: 1.0
species: M ARG LBRACKET E RBRACKET
type: SpeciesReference

M C6 COLON 2 LPAREN C2 COMMA C4 RPAREN LBRACKET C RBRACKET
is: CPD-3624
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: sorbate
type: Species

582508
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

617562
stoichiometry: 1.0
species: M CHOLINE LBRACKET C RBRACKET
type: SpeciesReference

577756
reactant: 577768
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of cytidine
type: Reaction

574421
stoichiometry: 1.0
species: M ADENOSINE LBRACKET E RBRACKET
type: SpeciesReference

597368
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

578850
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET
type: SpeciesReference

594164
stoichiometry: 1.0
species: M PQQ LBRACKET P RBRACKET
type: SpeciesReference

M ILE LBRACKET C RBRACKET
is: ILE
constant: false
initial concentration: NaN
boundary condition: false
initial amount: NaN
in compartment: 570138
type: Species
name: l-iso-leucine
is: C00407
has only substance units: false
is: ile-L

615164
stoichiometry: 1.0
species: M XANTHINE LBRACKET C RBRACKET
type: SpeciesReference

586663
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R C16 COLON 0 DASH COA DASH THIOLASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
product: 614613
is: FACOAE160
fast: false
reactant: 614587
reactant: 614574
name: acyl-coa thiolase (c16:0)
is: THIOESTER-RXN
reversible: false
product: 614600

600909
stoichiometry: 1.0
species: M C14 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

610376
stoichiometry: 1.0
species: M ACETYLSERINE LBRACKET C RBRACKET
type: SpeciesReference

608361
stoichiometry: 0.01
species: M CHARGED DASH HIS DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

617417
stoichiometry: 1.0
species: 570787
type: SpeciesReference

592862
stoichiometry: 1.0
species: M IMP LBRACKET C RBRACKET
type: SpeciesReference

R BRANCHED DASH CHAINAMINOTRANSFERLEU DASH RXN
type: Reaction
fast: false
name: leucine aminotransferase
product: 585049
reactant: 585037
product: 585061
is: LEUTAi
reactant: 585025
notes: GENE_ASSOCIATION: ACIAD0112 or ACIAD0597
reversible: true
is: BRANCHED-CHAINAMINOTRANSFERLEU-RXN

571292
stoichiometry: 1.0
species: 570234
type: SpeciesReference

M NITRITE LBRACKET C RBRACKET
is: NITRITE
is: C00088
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
constant: false
is: no2
name: no2-
in compartment: 570138
type: Species

M 3 DASH KETO DASH ADIPATE LBRACKET C RBRACKET
initial amount: NaN
constant: false
initial concentration: NaN
has only substance units: false
name: 3-ketoadipate
in compartment: 570138
boundary condition: false
type: Species
is: 3-KETO-ADIPATE
is: C00846

M C18 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
is: 3hoctaACP
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-hydroxyoctadecanoyl-acp
type: Species

588790
stoichiometry: 1.0
species: M GLC DASH 1 DASH P LBRACKET C RBRACKET
type: SpeciesReference

608289
stoichiometry: 1.0
species: M GLUTACONYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

580322
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

R DADPKIN DASH RXN
type: Reaction
reactant: 587685
reversible: true
is: NDPK8
product: 587697
product: 587709
name: dadp kinase
reactant: 587673
is: DADPKIN-RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD0556

586242
stoichiometry: 1.0
species: M BUTYRYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

600259
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

577960
stoichiometry: 1.0
species: M C8 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

589740
stoichiometry: 1.0
species: M DELTA LBRACE 1 RBRACE DASH PIPERIDEINE DASH 2 DASH 6 DASH DICARBOXYLATE LBRACKET C RBRACKET
type: SpeciesReference

617356
stoichiometry: 1.0
species: 570246
type: SpeciesReference

R TRANS DASH RXNIM DASH 5874
reversible: false
product: 615176
reactant: 615152
is: TRANS-RXNIM-5874
reactant: 615140
name: transport of xanthine [extraorganism;cytosol](secondary symport)
fast: false
product: 615164
is: XANt2pp
notes: GENE_ASSOCIATION: ACIAD0031 or ACIAD0136 or ACIAD0702 or ACIAD0762 or ACIAD1243
type: Reaction

M VAL DASH TRNAS LBRACKET C RBRACKET
initial amount: NaN
boundary condition: false
name: valine trna
is: trnaval
in compartment: 570138
is: C01653
is: VAL-TRNAS
constant: false
initial concentration: NaN
has only substance units: false
type: Species

R RIBOFLAVINSYNDEAM DASH RXN
is: DHPPDA2
fast: false
name: diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase)
type: Reaction
reversible: false
reactant: 617947
product: 617972
reactant: 617960
notes: GENE_ASSOCIATION: ACIAD0247
product: 617984
is: RIBOFLAVINSYNDEAM-RXN

R CATECHOL DASH 1 COMMA 2 DASH DIOXYGENASE DASH RXN
product: 588394
reactant: 588382
reactant: 588370
notes: GENE_ASSOCIATION: ACIAD1442
is: |CATECHOL-1,2-DIOXYGENASE-RXN|
fast: false
reversible: false
name: catechol 1,2-dioxygenase
type: Reaction

R MUCONOLACTONE DASH DELTA DASH ISOMERASE DASH RXN
product: 579777
reactant: 579765
notes: GENE_ASSOCIATION: ACIAD1447
is: MUCONOLACTONE-DELTA-ISOMERASE-RXN
fast: false
reversible: true
name: muconolactone delta-isomerase
type: Reaction

M LYS DASH TRNAS LBRACKET C RBRACKET
is: C01646
is: LYS-TRNAS
initial amount: NaN
has only substance units: false
in compartment: 570138
constant: false
initial concentration: NaN
is: trnalys
boundary condition: false
name: lysine trna
type: Species

594672
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

572459
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

571148
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans,cis-hexadec-2,7-enoyl-acp
type: Species

M AICAR LBRACKET C RBRACKET
constant: false
is: AICAR
is: C04677
boundary condition: false
name: aicar
initial amount: NaN
is: aicar
initial concentration: NaN
in compartment: 570138
has only substance units: false
type: Species

594744
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

604716
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

614063
stoichiometry: 1.0
species: 570715
type: SpeciesReference

608205
stoichiometry: 1.0
species: M NA PLUS LBRACKET C RBRACKET
type: SpeciesReference

R PHOSMANMUT DASH RXN
product: 575082
reactant: 575070
notes: GENE_ASSOCIATION: ACIAD0902 or ACIAD0104
is: PHOSMANMUT-RXN
is: PMANM
fast: false
reversible: true
name: phosphomannomutase
type: Reaction

594960
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET
type: SpeciesReference

575937
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

583628
stoichiometry: 0.222
species: M GTP LBRACKET C RBRACKET
type: SpeciesReference

580466
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

616619
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: SpeciesReference

593210
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

618647
stoichiometry: 1.0
species: M CATECHOL LBRACKET C RBRACKET
type: SpeciesReference

576382
stoichiometry: 1.0
species: M CPD DASH 110 LBRACKET C RBRACKET
type: SpeciesReference

615440
stoichiometry: 1.0
species: M L DASH BETA DASH ASPARTYL DASH P LBRACKET C RBRACKET
type: SpeciesReference

616839
reactant: 616851
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of ethanol-amine
type: Reaction

590572
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXNIM DASH 5876
product: 615128
reactant: 615116
notes: GENE_ASSOCIATION: ACIAD0127
is: TRANS-RXNIM-5876
fast: false
reversible: true
name: transport of d-galactarate [extraorganism;cytosol](passive)
type: Reaction

M CARBON DASH DIOXIDE LBRACKET C RBRACKET
is: CARBON-DIOXIDE
is: C00011
is: co2
initial amount: NaN
type: Species
initial concentration: NaN
in compartment: 570138
boundary condition: false
name: co2
constant: false
has only substance units: false

579969
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

576237
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

605691
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R HISTCYCLOHYD DASH RXN
name: phosphoribosyl-amp cyclohydrolase
is: PRAMPC
type: Reaction
reactant: 597635
notes: GENE_ASSOCIATION: ACIAD0380
is: HISTCYCLOHYD-RXN
reversible: false
fast: false
reactant: 597622
product: 597648

574204
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

606630
stoichiometry: 1.0
species: M TAURINE LBRACKET C RBRACKET
type: SpeciesReference

596911
stoichiometry: 1.0
species: M CIS DASH ACONITATE LBRACKET C RBRACKET
type: SpeciesReference

594816
stoichiometry: 1.0
species: M CIS DASH ACONITATE LBRACKET C RBRACKET
type: SpeciesReference

605054
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

M 4 DASH PHOSPHOPANTOTHENOYLCYSTEINE LBRACKET C RBRACKET
has only substance units: false
name: 4'-phospho-n-pantothenoylcysteine
constant: false
is: 4ppcys
is: C04352
type: Species
is: 4-PHOSPHOPANTOTHENOYLCYSTEINE
initial concentration: NaN
in compartment: 570138
boundary condition: false
initial amount: NaN

575769
stoichiometry: 1.0
species: M ACETOACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

601562
stoichiometry: 1.0
species: M MET LBRACKET C RBRACKET
type: SpeciesReference

613362
stoichiometry: 1.0
species: M NITRATE LBRACKET C RBRACKET
type: SpeciesReference

601053
stoichiometry: 1.0
species: M FUM LBRACKET C RBRACKET
type: SpeciesReference

579006
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

581062
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

606858
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

575070
stoichiometry: 1.0
species: M MANNOSE DASH 1P LBRACKET C RBRACKET
type: SpeciesReference

592126
stoichiometry: 1.0
species: M CDP LBRACKET C RBRACKET
type: SpeciesReference

593644
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

R ACETOINDEHYDROG DASH RXN
product: 607964
name: diacetyl reductase
fast: false
product: 607952
reactant: 607928
reactant: 607940
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1022
reversible: true
is: ACETOINDEHYDROG-RXN

580578
stoichiometry: 1.0
species: M D DASH LACTATE LBRACKET C RBRACKET
type: SpeciesReference

609304
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

607350
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

R XANPRIBOSYLTRAN DASH RXN
notes: GENE_ASSOCIATION: ACIAD3164
product: 598429
reactant: 598405
is: XANPRIBOSYLTRAN-RXN
fast: false
type: Reaction
reversible: false
name: xanthine-guanine phosphoribosyltransferase
product: 598417
reactant: 598392
is: XPPT

575661
stoichiometry: 1.0
species: M CPD DASH 302 LBRACKET C RBRACKET
type: SpeciesReference

M TRP LBRACKET C RBRACKET
in compartment: 570138
is: trp-L
is: C00078
name: l-tryptophan
initial amount: NaN
type: Species
initial concentration: NaN
has only substance units: false
constant: false
is: TRP
boundary condition: false

588010
stoichiometry: 1.0
species: M UDP LBRACKET C RBRACKET
type: SpeciesReference

R RIBULP3EPIM DASH RXN
product: 611194
reactant: 611182
notes: GENE_ASSOCIATION: ACIAD0685
is: RIBULP3EPIM-RXN
is: RPE
fast: false
reversible: true
name: ribulose phosphate 3-epimerase
type: Reaction

579151
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

599958
stoichiometry: 1.0
species: M CIS DASH CIS DASH MUCONATE LBRACKET C RBRACKET
type: SpeciesReference

590885
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

594804
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

R ABC DASH 13 DASH RXN
reactant: 598791
fast: false
reactant: 598803
is: GLUabcpp
name: transport of l-glutamate [extraorganism;cytosol](primary active atp)
product: 598851
is: ABC-13-RXN
product: 598839
reactant: 598815
notes: GENE_ASSOCIATION: ACIAD2056 and ACIAD2058 and ACIAD2059 and ACIAD2061
type: Reaction
reversible: false
product: 598827

618719
stoichiometry: 1.0
species: M 6 DASH P DASH GLUCONATE LBRACKET C RBRACKET
type: SpeciesReference

571522
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

603549
stoichiometry: 1.0
species: M LYS LBRACKET C RBRACKET
type: SpeciesReference

M 2 DASH OCTAPRENYL DASH 6 DASH HYDROXYPHENOL LBRACKET C RBRACKET
initial amount: NaN
initial concentration: NaN
is: C05811
name: 2-octaprenyl-6-hydroxyphenol
type: Species
constant: false
boundary condition: false
is: 2-OCTAPRENYL-6-HYDROXYPHENOL
in compartment: 570138
is: 2ohph
has only substance units: false

M PPI LBRACKET C RBRACKET
has only substance units: false
is: PPI
initial concentration: NaN
in compartment: 570138
is: C00013
type: Species
initial amount: NaN
is: ppi
name: pyrophosphate
boundary condition: false
constant: false

589692
stoichiometry: 1.0
species: M HYDROXY DASH METHYL DASH BUTENYL DASH DIP LBRACKET C RBRACKET
type: SpeciesReference

606197
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN DASH COA LBRACKET C RBRACKET
type: SpeciesReference

617754
stoichiometry: 1.0
species: M MAL LBRACKET E RBRACKET
type: SpeciesReference

M SUC LBRACKET E RBRACKET
is: succ
constant: false
initial amount: NaN
is: SUC
type: Species
is: C00042
has only substance units: false
initial concentration: NaN
in compartment: 570126
name: succinate
boundary condition: false

M CYTIDINE LBRACKET C RBRACKET
boundary condition: false
is: CYTIDINE
type: Species
has only substance units: false
initial amount: NaN
is: C00475
in compartment: 570138
is: cytd
initial concentration: NaN
name: cytidine
constant: false

591934
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

602515
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

599682
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

608967
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

576827
stoichiometry: 1.0
species: M C6 COLON 0 DASH CARBOXYCOA LBRACKET C RBRACKET
type: SpeciesReference

577056
stoichiometry: 1.0
species: M TYR LBRACKET C RBRACKET
type: SpeciesReference

M D DASH GLUCARATE LBRACKET E RBRACKET
boundary condition: false
is: glcr
initial amount: NaN
in compartment: 570126
name: d-glucarate
is: D-GLUCARATE
has only substance units: false
type: Species
initial concentration: NaN
is: C00818
constant: false

R PANTOTHENATE DASH KIN DASH RXN
notes: GENE_ASSOCIATION: ACIAD0840
is: PNTK
product: 615236
reactant: 615212
type: Reaction
reactant: 615224
reversible: true
fast: false
is: PANTOTHENATE-KIN-RXN
name: pantothenate kinase
product: 615248

589139
stoichiometry: 1.0
species: M UNDECAPRENYL DASH DIPHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

595056
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

601840
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

593439
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET
type: SpeciesReference

579705
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

573351
stoichiometry: 1.0
species: M CDPDIACYLGLYCEROL LBRACKET C RBRACKET
type: SpeciesReference

572663
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

M GLUCONATE LBRACKET E RBRACKET
name: gluconate
is: glcn
constant: false
type: Species
is: GLUCONATE
boundary condition: false
in compartment: 570126
is: C00257
initial concentration: NaN
initial amount: NaN
has only substance units: false

606906
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

612773
stoichiometry: 1.0
species: M C12 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

607038
stoichiometry: 1.0
species: 571124
type: SpeciesReference

M ACETOACETYL DASH S DASH ACP LBRACKET C RBRACKET
initial amount: NaN
type: Species
has only substance units: false
name: acetoacetyl-acp
initial concentration: NaN
is: ACETOACETYL-S-ACP
is: C05744
boundary condition: false
in compartment: 570138
constant: false
is: actACP

http://identifiers.org/biomodels.db/MODEL1949107276#R_C5_COLON_0_DASH_CARBOXY2ENOYLCOA_DASH_HYDRATASE_DASH_RXN
product: 608301
reactant: 608289
reactant: 608277
notes: GENE_ASSOCIATION: ACIAD1692
is: RXNIM-6201
fast: false
reversible: false
name: dicarboxylate enoyl-coa hydratase (c5:0)
type: Reaction

616402
stoichiometry: 1.0
species: M HOMOSERINE DASH LACTONE LBRACKET E RBRACKET
type: SpeciesReference

591837
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

M ALA DASH TRNAS LBRACKET C RBRACKET
in compartment: 570138
initial concentration: NaN
boundary condition: false
name: alanine trna
constant: false
is: trnaala
initial amount: NaN
is: C01635
type: Species
has only substance units: false
is: ALA-TRNAS

M C10 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
has only substance units: false
is: C05754
boundary condition: false
is: TRANS-D2-DECENOYL-ACP
in compartment: 570138
is: tdec2eACP
name: trans-dec-2-enoyl-acp
initial concentration: NaN
initial amount: NaN
type: Species
constant: false

R C16 COLON 1 LPAREN C7 RPAREN DASH 3OXOACP DASH REDUCTASE DASH RXN
is: 3-OXOACYL-ACP-REDUCT-RXN
product: 597855
reactant: 597829
notes: GENE_ASSOCIATION: ACIAD0871
fast: false
type: Reaction
reactant: 597816
reversible: false
name: 3oxoacyl-acp reductase (c16:1(c7))
product: 597842

595913
stoichiometry: 1.0
species: M CHARGED DASH TRP DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

577310
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

M TTP LBRACKET C RBRACKET
name: ttp
is: TTP
is: dttp
initial concentration: NaN
in compartment: 570138
is: C00459
boundary condition: false
constant: false
has only substance units: false
type: Species
initial amount: NaN

571208
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: HEME_O
type: Species

R TRANS DASH RXN DASH MAL DASH DAACS
type: Reaction
reversible: false
fast: false
reactant: 617754
is: TRANS-RXN-121A
product: 617790
notes: GENE_ASSOCIATION: ACIAD1026 or ACIAD2227 or ACIAD1191 or ACIAD1866
product: 617778
reactant: 617766
name: transport of malate [extraorganism;cytosol](secondary symport) DAACS family

580822
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

610810
stoichiometry: 1.0
species: M CPDIM DASH 6114 LBRACKET E RBRACKET
type: SpeciesReference

600981
stoichiometry: 1.0
species: M BENZOATE LBRACKET C RBRACKET
type: SpeciesReference

575877
stoichiometry: 1.0
species: M GLT DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

591415
stoichiometry: 0.24
species: M C16 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

598707
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

M PYRUVATE LBRACKET C RBRACKET
has only substance units: false
type: Species
is: C00022
initial amount: NaN
is: PYRUVATE
name: pyruvate
is: pyr
in compartment: 570138
initial concentration: NaN
boundary condition: false
constant: false

592632
stoichiometry: 1.67
species: M DTDP DASH RHAMNOSE LBRACKET C RBRACKET
type: SpeciesReference

581821
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

573987
stoichiometry: 1.0
species: M HIS LBRACKET C RBRACKET
type: SpeciesReference

M THZ DASH P LBRACKET C RBRACKET
type: Species
is: THZ-P
initial amount: NaN
is: C04327
is: 4mpetz
initial concentration: NaN
name: 4-methyl-5-(beta-hydroxyethyl)thiazole phosphate
constant: false
in compartment: 570138
has only substance units: false
boundary condition: false

613724
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET
type: SpeciesReference

581797
stoichiometry: 1.0
species: M MET LBRACKET C RBRACKET
type: SpeciesReference

592596
fast: false
name: generic udp-polysaccharide of lps assembly
type: Reaction
notes: GENE_ASSOCIATION:
reactant: 592620
product: 592668
reversible: false
product: 592656
reactant: 592608
reactant: 592632
product: 592680
product: 592644

611266
stoichiometry: 1.0
species: M THR LBRACKET C RBRACKET
type: SpeciesReference

582014
stoichiometry: 1.0
species: M C4 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

M LL DASH DIAMINOPIMELATE LBRACKET C RBRACKET
name: ll-diaminopimelate
boundary condition: false
is: LL-DIAMINOPIMELATE
initial concentration: NaN
is: 26dap-LL
type: Species
initial amount: NaN
constant: false
in compartment: 570138
has only substance units: false
is: C00666

M CARBON DASH DIOXIDE LBRACKET E RBRACKET
has only substance units: false
boundary condition: false
type: Species
is: C00011
in compartment: 570126
constant: false
is: CARBON-DIOXIDE
initial amount: NaN
is: co2
name: co2
initial concentration: NaN

R C6 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
fast: false
product: 601366
reactant: 601330
is: OHACYL-COA-DEHYDROG-RXN
type: Reaction
reactant: 601342
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
reversible: false
is: HACD2i
product: 601354
name: hydroxyacyl-coa dehydrogenase (c6:0)

596875
reactant: 596887
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-aspartate
type: Reaction

610569
stoichiometry: 1.0
species: M ARG LBRACKET E RBRACKET
type: SpeciesReference

596225
stoichiometry: 1.0
species: M UDP LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH GLYCEROL DASH OUT
product: 614876
reactant: 614864
notes: GENE_ASSOCIATION:
is: GLYCtpp
fast: false
reversible: false
name: transport of glycerol [cytosol;extraorganism](passive)
type: Reaction

586820
stoichiometry: 1.0
species: M N DASH ACETYL DASH D DASH GLUCOSAMINE DASH 1 DASH P LBRACKET C RBRACKET
type: SpeciesReference

605318
stoichiometry: 1.0
species: M L DASH CYSTATHIONINE LBRACKET C RBRACKET
type: SpeciesReference

580102
stoichiometry: 1.0
species: M GLC LBRACKET E RBRACKET
type: SpeciesReference

R OROPRIBTRANS DASH RXN
fast: false
name: orotate phosphoribosyltransferase
reversible: true
product: 617199
is: OROPRIBTRANS-RXN
reactant: 617187
product: 617211
is: ORPT
reactant: 617175
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3525

572387
stoichiometry: 2.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

612122
stoichiometry: 1.0
species: M DEOXYCYTIDINE LBRACKET E RBRACKET
type: SpeciesReference

R GLYOXII DASH RXN
fast: false
type: Reaction
reversible: true
is: GLYOX
is: GLYOXII-RXN
name: hydroxyacylglutathione hydrolase
notes: GENE_ASSOCIATION: ACIAD2452
product: 609075
reactant: 609039
reactant: 609051
product: 609063

605463
stoichiometry: 1.0
species: M D DASH GLT LBRACKET C RBRACKET
type: SpeciesReference

588658
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

618453
stoichiometry: 2.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

600476
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

590356
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

M AMMONIUM LBRACKET E RBRACKET
boundary condition: false
initial amount: NaN
in compartment: 570126
is: AMMONIUM
type: Species
name: nh4+
has only substance units: false
is: nh4
is: C01342
initial concentration: NaN
constant: false

600536
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

575346
stoichiometry: 1.0
species: M BETAINE LBRACKET E RBRACKET
type: SpeciesReference

R GLUTARYL DASH COA DASH DEHYDROGENASE DASH RXN
reversible: false
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1660
is: GLUTARYL-COA-DEHYDROGENASE-RXN
reactant: 573603
product: 573651
product: 573639
reactant: 573615
name: glutaryl-coa dehydrogenase (producing crotonyl-coa)
product: 573627
fast: false

R AMP DASH DEPHOSPHORYLATION DASH RXN
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227
fast: false
product: 586050
is: NTD7
product: 586038
reversible: false
reactant: 586026
is: AMP-DEPHOSPHORYLATION-RXN
type: Reaction
reactant: 586014
name: amp nucleotidase

610004
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET C RBRACKET
has only substance units: false
initial amount: NaN
name: 3-dehydro-shikimate
type: Species
boundary condition: false
is: C02637
is: 3-DEHYDRO-SHIKIMATE
in compartment: 570138
is: 3dhsk
constant: false
initial concentration: NaN

603224
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH 201
reactant: 601852
product: 601888
reversible: false
reactant: 601864
name: transport of citrate [extraorganism;cytosol](secondary symport)
notes: GENE_ASSOCIATION: ACIAD1074 or ACIAD1931 or ACIAD2818
type: Reaction
is: CITt7pp
is: TRANS-RXN-201
fast: false
product: 601876

586446
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

602708
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

600656
stoichiometry: 1.0
species: M ACETYL DASH P LBRACKET C RBRACKET
type: SpeciesReference

611050
stoichiometry: 40.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

587264
stoichiometry: 1.0
species: M 6 DASH P DASH GLUCONATE LBRACKET C RBRACKET
type: SpeciesReference

M CHARGED DASH VAL DASH TRNAS LBRACKET C RBRACKET
initial concentration: NaN
in compartment: 570138
is: valtrna
initial amount: NaN
type: Species
is: C02554
constant: false
is: CHARGED-VAL-TRNAS
boundary condition: false
name: charged valine trna
has only substance units: false

M GLUTAMATE DASH 1 DASH SEMIALDEHYDE LBRACKET C RBRACKET
constant: false
initial concentration: NaN
initial amount: NaN
name: glutamate-1-semialdehyde
has only substance units: false
is: glu1sa
is: C03741
is: GLUTAMATE-1-SEMIALDEHYDE
in compartment: 570138
type: Species
boundary condition: false

610714
stoichiometry: 1.0
species: M 3 DASH OHMYRISTOYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

604680
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

611460
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH FE PLUS 2
product: 590284
reactant: 590272
notes: GENE_ASSOCIATION: ACIAD0268 or ACIAD1471 or ACIAD0531
is: TRANS-RXN-8
is: FE2tpp
fast: false
reversible: true
name: transport of fe+2 [extraorganism;cytosol](passive)
type: Reaction

R C14 COLON 1 LPAREN C5 RPAREN DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
product: 596983
reactant: 596971
reactant: 596959
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
is: ENOYL-COA-HYDRAT-RXN
fast: false
reversible: false
name: enoyl-coa hydratase (c14:1(c5))
type: Reaction

R DIOHBUTANONEPSYN DASH RXN
product: 574878
reactant: 574866
reversible: true
is: DB4PS
product: 574890
notes: GENE_ASSOCIATION: ACIAD2913 or ACIAD3570
name: 3,4-dihydroxy-2-butanone-4-phosphate synthase
is: DIOHBUTANONEPSYN-RXN
type: Reaction
fast: false

580030
stoichiometry: 1.0
species: M CPD DASH 1772 LBRACKET C RBRACKET
type: SpeciesReference

591079
stoichiometry: 0.28
species: M C16 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

602419
stoichiometry: 1.0
species: M 2 DASH KETO DASH ISOVALERATE LBRACKET C RBRACKET
type: SpeciesReference

578368
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

R C8 COLON 0 DASH 3OXOCOA DASH THIOLASE DASH RXN
name: 3oxoacyl-coa thiolase (c8:0)
product: 594236
reversible: true
product: 594248
fast: false
type: Reaction
is: KETOACYLCOATHIOL-RXN
is: KAT3
reactant: 594224
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
reactant: 594212

614509
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

585496
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET
type: SpeciesReference

578778
stoichiometry: 1.0
species: M BISOHMYR DASH GLC LBRACKET C RBRACKET
type: SpeciesReference

581978
stoichiometry: 1.0
species: M DELTA LBRACE 1 RBRACE DASH PIPERIDEINE DASH 2 DASH 6 DASH DICARBOXYLATE LBRACKET C RBRACKET
type: SpeciesReference

598671
stoichiometry: 1.0
species: M C14 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: SpeciesReference

590296
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: SpeciesReference

605487
stoichiometry: 1.0
species: M CDPDIACYLGLYCEROL LBRACKET C RBRACKET
type: SpeciesReference

R SUCCSEMIALDDEHYDROG DASH RXN
name: succinate-semialdehyde dehydrogenase (nad(p)+)
reactant: 604933
is: SUCCSEMIALDDEHYDROG-RXN
product: 604958
reversible: true
fast: false
is: SSALy
product: 604945
reactant: 604909
type: Reaction
reactant: 604921
notes: GENE_ASSOCIATION: ACIAD0960 or ACIAD2539 or ACIAD3445

595297
stoichiometry: 1.0
species: M O DASH PHOSPHO DASH L DASH HOMOSERINE LBRACKET C RBRACKET
type: SpeciesReference

582726
stoichiometry: 1.0
species: M VAL LBRACKET C RBRACKET
type: SpeciesReference

589367
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

601912
stoichiometry: 1.0
species: M CYS LBRACKET C RBRACKET
type: SpeciesReference

606990
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

590464
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R GTP DASH CYCLOHYDRO DASH I DASH RXN
reversible: true
notes: GENE_ASSOCIATION: ACIAD2470
reactant: 608906
name: gtp cyclohydrolase i
type: Reaction
product: 608942
is: GTPCI
is: GTP-CYCLOHYDRO-I-RXN
reactant: 608918
product: 608930
fast: false

M MALONYL DASH COA LBRACKET C RBRACKET
is: malcoa
constant: false
is: MALONYL-COA
boundary condition: false
is: C00083
initial amount: NaN
type: Species
initial concentration: NaN
has only substance units: false
in compartment: 570138
name: malonyl-coa

586026
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

612230
stoichiometry: 1.0
species: 571220
type: SpeciesReference

576165
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

597212
stoichiometry: 1.0
species: M TMP LBRACKET C RBRACKET
type: SpeciesReference

581640
stoichiometry: 1.0
species: M FE PLUS 2 LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 188 LBRACKET C RBRACKET
has only substance units: false
in compartment: 570138
boundary condition: false
name: undecaprenol
constant: false
is: CPD-188
initial concentration: NaN
is: C01968
type: Species
is: udcp
initial amount: NaN

592487
stoichiometry: 1.0
species: M OCTANOL LBRACKET C RBRACKET
type: SpeciesReference

609860
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

594236
stoichiometry: 1.0
species: M C6 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

583960
stoichiometry: 1.0
species: M C14 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: SpeciesReference

615968
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

595200
stoichiometry: 1.0
species: M HYDROXY DASH METHYL DASH BUTENYL DASH DIP LBRACKET C RBRACKET
type: SpeciesReference

583817
stoichiometry: 1.0
species: M AMINO DASH RIBOSYLAMINO DASH 1H DASH 3H DASH PYR DASH DIONE LBRACKET C RBRACKET
type: SpeciesReference

605270
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

574938
stoichiometry: 1.0
species: M MET DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

587336
stoichiometry: 1.0
species: 570198
type: SpeciesReference

618381
stoichiometry: 1.0
species: M DGDP LBRACKET C RBRACKET
type: SpeciesReference

596333
stoichiometry: 2.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

607940
stoichiometry: 1.0
species: M ACETOIN LBRACKET C RBRACKET
type: SpeciesReference

582122
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

M D DASH SEDOHEPTULOSE DASH 7 DASH P LBRACKET C RBRACKET
is: C00281
initial concentration: NaN
boundary condition: false
has only substance units: false
in compartment: 570138
is: s7p
constant: false
is: D-SEDOHEPTULOSE-7-P
name: sedoheptulose-7-phosphate
type: Species
initial amount: NaN

R NITRATREDUCT DASH RXN
name: nitrate reductase
notes: GENE_ASSOCIATION: ACIAD1908 and ACIAD1909
product: 613410
product: 613387
type: Reaction
reactant: 613362
reversible: false
product: 613398
reactant: 613375
is: NITRATREDUCT-RXN
fast: false
is: NO3R1pp

596983
stoichiometry: 1.0
species: 570547
type: SpeciesReference

596285
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

M BUTYRYL DASH COA LBRACKET C RBRACKET
boundary condition: false
is: btcoa
name: butanoyl-coa
type: Species
has only substance units: false
is: BUTYRYL-COA
is: C00136
in compartment: 570138
initial amount: NaN
constant: false
initial concentration: NaN

607880
stoichiometry: 1.0
species: M DCTP LBRACKET C RBRACKET
type: SpeciesReference

R DNA DASH SYNTH DASH RXN
reactant: 584797
name: dna synthesis reaction
product: 584809
is: DNA-DIRECTED-DNA-POLYMERASE-RXN
product: 584845
notes: GENE_ASSOCIATION:
reactant: 584749
reversible: false
fast: false
reactant: 584761
type: Reaction
reactant: 584773
product: 584833
reactant: 584785
product: 584821

618236
stoichiometry: 1.0
species: M PURINE LBRACKET C RBRACKET
type: SpeciesReference

592524
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

586338
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

591633
stoichiometry: 1.0
species: M MALONYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1949107276#R_C7_COLON_0_DASH_CARBOXY3OXOCOA_DASH_THIOLASE_DASH_RXN
notes: GENE_ASSOCIATION: ACIAD1689
product: 597699
product: 597686
type: Reaction
is: RXNIM-6203
reactant: 597673
fast: false
reversible: true
name: dicarboxylate 3oxoacyl-coa thiolase (c7:0)
reactant: 597661

587481
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

614210
stoichiometry: 2.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

573831
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

580189
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

571414
stoichiometry: 1.0
species: M GTP LBRACKET C RBRACKET
type: SpeciesReference

598067
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

R C18 COLON 1 LPAREN C9 RPAREN DASH COATRANSFERASE DASH RXN
fast: false
product: 606185
product: 606197
reactant: 606149
name: acyl coa transferase (c18:1(c9))
reversible: false
is: ACYLCOASYN-RXN
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
reactant: 606137
reactant: 606161
product: 606173
type: Reaction

611110
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

M CHARGED DASH ASN DASH TRNAS LBRACKET C RBRACKET
is: CHARGED-ASN-TRNAS
in compartment: 570138
is: C03402
name: charged asparagine trna
initial concentration: NaN
initial amount: NaN
has only substance units: false
constant: false
type: Species
boundary condition: false
is: asntrna

R C18 COLON 0 DASH 2ENOYLACP DASH REDUCTASE DASH RXN
reactant: 577455
reversible: false
fast: false
type: Reaction
reactant: 577443
product: 577467
is: EAR180x
is: ENOYL-ACP-REDUCT-NADH-RXN
name: 2enoyl-acp reductase (c18:0)
product: 577479
notes: GENE_ASSOCIATION: ACIAD3116

572230
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

R 2 DASH OCTAPRENYL DASH 6 DASH OHPHENOL DASH METHY DASH RXN
notes: GENE_ASSOCIATION: ACIAD0044
product: 577683
type: Reaction
name: 2-octaprenyl-6-hydroxyphenol methylase
product: 577695
reactant: 577671
is: 2-OCTAPRENYL-6-OHPHENOL-METHY-RXN
reversible: false
reactant: 577659
fast: false
is: OHPHM

617284
reactant: 617296
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of d-alanine
type: Reaction

589475
stoichiometry: 1.0
species: M L DASH LACTATE LBRACKET E RBRACKET
type: SpeciesReference

601354
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: SpeciesReference

610605
stoichiometry: 1.0
species: M FARNESYL DASH PP LBRACKET C RBRACKET
type: SpeciesReference

R ARGSUCCINLYA DASH RXN
type: Reaction
reactant: 578718
reversible: true
is: ARGSUCCINLYA-RXN
product: 578730
is: ARGSL
product: 578742
fast: false
name: argininosuccinate lyase
notes: GENE_ASSOCIATION: ACIAD0283

R ALLOPHANATE DASH HYDROLASE DASH RXN
product: 592572
notes: GENE_ASSOCIATION: ACIAD2518
name: allophanate hydrolase
reactant: 592548
reactant: 592560
reversible: false
fast: false
product: 592584
is: ALPHNH
is: ALLOPHANATE-HYDROLASE-RXN
type: Reaction

606570
stoichiometry: 1.0
species: M TAURINE LBRACKET E RBRACKET
type: SpeciesReference

595538
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

596177
reactant: 596189
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of salicylacetate
type: Reaction

604006
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

605126
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

R THRESYN DASH RXN
fast: false
product: 595334
reactant: 595297
reactant: 595309
notes: GENE_ASSOCIATION: ACIAD0263
type: Reaction
reversible: false
product: 595321
name: threonine synthase
is: THRS
is: THRESYN-RXN

574710
stoichiometry: 1.0
species: 570487
type: SpeciesReference

609243
stoichiometry: 1.0
species: M DGTP LBRACKET C RBRACKET
type: SpeciesReference

R C16 COLON 1 LPAREN C7 RPAREN DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
product: 610521
name: hydroxyacyl-coa dehydrogenase (c16:1(c7))
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
is: OHACYL-COA-DEHYDROG-RXN
product: 610508
reversible: false
fast: false
reactant: 610496
reactant: 610484
type: Reaction

575457
stoichiometry: 1.0
species: M N2 DASH SUCCINYLORNITHINE LBRACKET C RBRACKET
type: SpeciesReference

M C12 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
in compartment: 570138
is: dd2coa
name: trans-dodec-2-enoyl-coa
boundary condition: false
is: C03221
initial concentration: NaN
constant: false
type: Species
has only substance units: false
initial amount: NaN

613580
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

M C6 LBRACKET C RBRACKET
in compartment: 570138
initial concentration: NaN
initial amount: NaN
boundary condition: false
constant: false
is: C05898
is: C6
name: undecaprenyl-pyrophosphoryl-murnac-(pentapeptide)-n-acetylglucosamine
is: uaagmda
type: Species
has only substance units: false

600764
stoichiometry: 1.0
species: M GLUCONATE LBRACKET E RBRACKET
type: SpeciesReference

578477
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

612916
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

604608
stoichiometry: 1.0
species: 570655
type: SpeciesReference

601294
stoichiometry: 1.0
species: M THZ LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH TYR
fast: false
type: Reaction
is: TRANS-RXNIM-5921
product: 589259
notes: GENE_ASSOCIATION: ACIAD1343 or ACIAD2969
is: TYRt2rpp
product: 589271
reactant: 589235
reactant: 589247
reversible: true
name: transport of l-tyrosine [extraorganism;cytosol](secondary symport)

600054
stoichiometry: 3.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

583895
stoichiometry: 1.0
species: M CARNITINE LBRACKET E RBRACKET
type: SpeciesReference

M MET LBRACKET C RBRACKET
name: l-methionine
boundary condition: false
is: met-L
in compartment: 570138
type: Species
has only substance units: false
is: MET
initial amount: NaN
constant: false
is: C00073
initial concentration: NaN

R TRANS DASH RXN DASH DEOXYCYTIDINE
is: DCYTt2pp
reactant: 612134
product: 612158
fast: false
reactant: 612122
product: 612146
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: ACIAD2389
name: transport of deoxycytidine [extraorganism;cytosol](secondary symport)
is: TRANS-RXN-108D

R C6 COLON 0 DASH COA DASH THIOLASE DASH RXN
reversible: false
product: 607700
name: acyl-coa thiolase (c6:0)
product: 607688
is: THIOESTER-RXN
reactant: 607664
is: FACOAE60
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
fast: false
type: Reaction
reactant: 607676

588863
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH C8 COLON 0
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
name: transport of octanoate [extraorganism;cytosol](secondary symport)
product: 577996
fast: false
product: 577984
is: TRANS-RXNIM-5726
reversible: true
reactant: 577972
reactant: 577960
type: Reaction

M ACETALD LBRACKET C RBRACKET
constant: false
type: Species
has only substance units: false
boundary condition: false
is: ACETALD
initial amount: NaN
is: C00084
initial concentration: NaN
name: acetaldehyde
in compartment: 570138
is: acald

576442
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

575601
stoichiometry: 1.0
species: M CPD DASH 650 LBRACKET C RBRACKET
type: SpeciesReference

585109
stoichiometry: 1.0
species: M 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET
type: SpeciesReference

578092
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

584641
product: 584689
product: 584677
reactant: 584665
reactant: 584653
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: long chain aldehyde reductase (c16:0)
type: Reaction

R DIHYDRODIPICSYN DASH RXN
reactant: 579332
fast: false
is: DHDPS
product: 579356
is: DIHYDRODIPICSYN-RXN
reversible: true
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3585
name: dihydrodipicolinate synthase
reactant: 579344
product: 579368

590681
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

594044
stoichiometry: 1.0
species: M C8 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

583159
product: 583183
reactant: 583171
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: conversion to "mass" metabolite of wax
type: Reaction

573555
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

595696
stoichiometry: 1.0
species: M RIBOSE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

577394
stoichiometry: 1.0
species: M PHOSPHORIBULOSYL DASH FORMIMINO DASH AICAR DASH P LBRACKET C RBRACKET
type: SpeciesReference

R 3 DASH ISOPROPYLMALISOM DASH RXN
is: IPPMIa
reversible: true
notes: GENE_ASSOCIATION: ACIAD0466 and ACIAD0463
name: 3-isopropylmalate dehydratase
reactant: 590247
fast: false
is: 3-ISOPROPYLMALISOM-RXN
type: Reaction
product: 590259
is: IPPMIb

R L DASH GLN DASH FRUCT DASH 6 DASH P DASH AMINOTRANS DASH RXN
product: 612351
fast: false
notes: GENE_ASSOCIATION: ACIAD3576
reactant: 612327
name: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
reversible: false
type: Reaction
is: L-GLN-FRUCT-6-P-AMINOTRANS-RXN
product: 612363
is: GF6PTA
reactant: 612339

R C16 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
is: 3-OXOACYL-ACP-REDUCT-RXN
name: 3oxoacyl-acp reductase (c16:0)
notes: GENE_ASSOCIATION: ACIAD0871
reactant: 599358
fast: false
product: 599382
reversible: false
reactant: 599346
product: 599370
is: 3OAR160
type: Reaction

M DEOXYURIDINE LBRACKET E RBRACKET
constant: false
is: duri
initial amount: NaN
in compartment: 570126
is: DEOXYURIDINE
type: Species
initial concentration: NaN
is: C00526
name: deoxyuridine
boundary condition: false
has only substance units: false

574866
stoichiometry: 1.0
species: M RIBULOSE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

609015
stoichiometry: 1.0
species: 571124
type: SpeciesReference

614613
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

607242
stoichiometry: 1.0
species: M CPDIM DASH 6112 LBRACKET E RBRACKET
type: SpeciesReference

609521
stoichiometry: 0.44
species: M 3 DASH OHMYRISTOYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

R RXN0 DASH 743
product: 601017
reactant: 601005
notes: GENE_ASSOCIATION: ACIAD3659
is: RXN0-743
is: AIRC3
fast: false
reversible: false
name: phosphoribosylaminoimidazole carboxylase, mutase subunit
type: Reaction

593367
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

593983
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

596803
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

613470
reactant: 613482
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 2-aminobenzoate
type: Reaction

614496
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

577539
stoichiometry: 1.0
species: M CPD DASH 592 LBRACKET E RBRACKET
type: SpeciesReference

589584
stoichiometry: 1.0
species: 571184
type: SpeciesReference

597067
reactant: 597079
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of octane
type: Reaction

604572
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

R C10 COLON 0 DASH CARBOXY DASH COATRANSFERASE DASH RXN
product: 611641
product: 611629
fast: false
reactant: 611617
type: Reaction
reversible: false
name: dicarboxylate acyl coa transferase (c10:0)
reactant: 611593
reactant: 611605
product: 611653
is: RXNIM-6198
notes: GENE_ASSOCIATION: ACIAD1695 and ACIAD1696

M RIBOSE LBRACKET C RBRACKET
initial concentration: NaN
is: rib-D
name: ribose
has only substance units: false
is: C00121
boundary condition: false
in compartment: 570138
constant: false
is: RIBOSE
initial amount: NaN
type: Species

R GUANPRIBOSYLTRAN DASH RXN
name: guanine phosphoribosyltransferase
is: GUAPRT
product: 593740
fast: false
notes: GENE_ASSOCIATION: ACIAD3669
reactant: 593716
type: Reaction
is: GUANPRIBOSYLTRAN-RXN
product: 593753
reactant: 593728
reversible: false

588358
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET
type: SpeciesReference

606089
stoichiometry: 1.0
species: M SARCOSINE LBRACKET C RBRACKET
type: SpeciesReference

572038
stoichiometry: 1.0
species: M C16 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M CPDIM DASH 6096 LBRACKET C RBRACKET
is: CPDIM-6096
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3,4-dihydroxyphenyl-beta-hydroxypropionyl-coa
type: Species

603116
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R THIAZOLSYN2 DASH RXN
name: thiazole phosphate synthesis
reactant: 593186
product: 593210
product: 593282
product: 593258
fast: false
is: THIAZOLSYN2-RXN
is: THIFAMP-RXN
type: Reaction
product: 593234
reversible: true
is: THZPSN
product: 593270
is: THIFIS-RXN
product: 593222
reactant: 593174
reactant: 593162
notes: GENE_ASSOCIATION: ACIAD1308 and ACIAD1309 and ACIAD2411 and ACIAD1404
product: 593246
reactant: 593198

579223
product: 579271
reactant: 579259
reactant: 579247
reactant: 579235
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: generic phospholipid assembly
type: Reaction

590777
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

R RXN0 DASH 742
notes: GENE_ASSOCIATION: ACIAD3658
type: Reaction
product: 603128
name: phosphoribosylaminoimidazole carboxylase, atpase subunit
reactant: 603104
is: RXN0-742
fast: false
product: 603140
is: AIRC2
reactant: 603068
product: 603116
reactant: 603080
reactant: 603092
reversible: false

581340
stoichiometry: 1.0
species: M TRIACYLGLYCEROL LBRACKET C RBRACKET
type: SpeciesReference

618308
reactant: 618320
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of formate
type: Reaction

593753
stoichiometry: 1.0
species: M GMP LBRACKET C RBRACKET
type: SpeciesReference

M SO3 LBRACKET E RBRACKET
has only substance units: false
in compartment: 570126
name: so3-2
constant: false
initial concentration: NaN
type: Species
initial amount: NaN
boundary condition: false
is: C00094
is: so3
is: SO3

R TRANS DASH RXN DASH INOSINE
notes: GENE_ASSOCIATION: ACIAD2389
product: 586482
reactant: 586470
type: Reaction
is: INSt2rpp
reversible: true
reactant: 586458
product: 586494
name: transport of inosine [extraorganism;cytosol](secondary symport)
fast: false
is: RXN0-18

601997
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

580714
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

599802
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

580602
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

599754
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

588911
stoichiometry: 1.0
species: M CPD DASH 1136 LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 313 LBRACKET C RBRACKET
initial concentration: NaN
in compartment: 570138
constant: false
boundary condition: false
initial amount: NaN
is: C00986
has only substance units: false
type: Species
is: 13dampp
name: 1,3-diaminopropane
is: CPD-313

600800
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

575553
stoichiometry: 1.0
species: M GLUTATHIONE LBRACKET C RBRACKET
type: SpeciesReference

M C12 COLON 0 LBRACKET C RBRACKET
name: dodecanoate
is: C02679
in compartment: 570138
type: Species
is: ddca
initial concentration: NaN
initial amount: NaN
constant: false
boundary condition: false
has only substance units: false
is: DODECANOATE

576719
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R ORNCARBAMTRANSFER DASH RXN
reactant: 616029
name: ornithine carbamoyltransferase
reversible: true
reactant: 616017
is: OCBT
product: 616041
product: 616053
fast: false
is: ORNCARBAMTRANSFER-RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1366

R QUINOPRIBOTRANS DASH RXN
product: 589343
is: NNDPR
type: Reaction
reactant: 589331
product: 589355
fast: false
reactant: 589319
notes: GENE_ASSOCIATION: ACIAD0062
product: 589367
is: QUINOPRIBOTRANS-RXN
name: nicotinate-nucleotide pyrophosphorylase (carboxylating)
reversible: false

591729
stoichiometry: 1.0
species: M B DASH ALANINE LBRACKET C RBRACKET
type: SpeciesReference

M C16 COLON 0 LBRACKET C RBRACKET
is: PALMITATE
type: Species
is: C00249
has only substance units: false
constant: false
name: hexadecanoate
in compartment: 570138
is: hdca
initial concentration: NaN
boundary condition: false
initial amount: NaN

587192
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R ASPARTATE DASH RACEMASE DASH RXN
product: 609932
reactant: 609920
notes: GENE_ASSOCIATION: ACIAD0318
is: ASPARTATE-RACEMASE-RXN
fast: false
reversible: true
name: aspartate racemase
type: Reaction

572771
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

583739
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

M QUINOLINATE LBRACKET C RBRACKET
has only substance units: false
initial amount: NaN
boundary condition: false
name: quinolinate
is: QUINOLINATE
is: C03722
initial concentration: NaN
type: Species
in compartment: 570138
is: quln
constant: false

M 2 DASH OXOBUTANOATE LBRACKET C RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
name: 2-oxobutanoate
constant: false
is: C00109
has only substance units: false
boundary condition: false
is: 2obut
in compartment: 570138
is: 2-OXOBUTANOATE

609667
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

607146
stoichiometry: 1.0
species: M CPDIM DASH 6116 LBRACKET C RBRACKET
type: SpeciesReference

603658
stoichiometry: 1.0
species: M TYR DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

M DEOXYINOSINE LBRACKET E RBRACKET
in compartment: 570126
name: deoxyinosine
is: DEOXYINOSINE
is: din
constant: false
is: C05512
initial amount: NaN
boundary condition: false
has only substance units: false
type: Species
initial concentration: NaN

585520
stoichiometry: 4.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

596045
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

589247
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

M PUTRESCINE LBRACKET C RBRACKET
initial concentration: NaN
in compartment: 570138
is: PUTRESCINE
type: Species
initial amount: NaN
constant: false
name: putrescine
has only substance units: false
is: ptrc
is: C00134
boundary condition: false

M ADIPATE LBRACKET E RBRACKET
is: C06104
has only substance units: false
name: adipate
initial concentration: NaN
type: Species
in compartment: 570126
boundary condition: false
initial amount: NaN
is: ADIPATE
constant: false

597686
stoichiometry: 1.0
species: M GLUTARYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

600872
stoichiometry: 1.0
species: M C14 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

617862
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

588923
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

598924
stoichiometry: 1.0
species: M CHARGED DASH ALA DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

599093
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M FMNH2 LBRACKET C RBRACKET
initial concentration: NaN
in compartment: 570138
constant: false
is: C01847
is: fmnh2
has only substance units: false
name: fmnh2
boundary condition: false
type: Species
is: FMNH2
initial amount: NaN

M URIDINE LBRACKET C RBRACKET
in compartment: 570138
name: uridine
is: C00299
boundary condition: false
is: uri
constant: false
type: Species
initial amount: NaN
is: URIDINE
has only substance units: false
initial concentration: NaN

608857
stoichiometry: 1.0
species: M LYS LBRACKET E RBRACKET
type: SpeciesReference

577467
stoichiometry: 1.0
species: M C18 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

570150
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 9-carboxy-3-hydroxynonanoyl-coa
type: Species

R CPM DASH KDOSYNTH DASH RXN
is: CPM-KDOSYNTH-RXN
reactant: 590753
reactant: 590765
is: KDOCT2
fast: false
product: 590789
product: 590777
notes: GENE_ASSOCIATION: ACIAD2362
name: 3-deoxy-manno-octulosonate cytidylyltransferase
type: Reaction
reversible: false

595622
stoichiometry: 1.0
species: M THIAMINE DASH P LBRACKET C RBRACKET
type: SpeciesReference

582435
stoichiometry: 1.0
species: M FE PLUS 2 LBRACKET C RBRACKET
type: SpeciesReference

592378
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M OXYGEN DASH MOLECULE LBRACKET E RBRACKET
initial amount: NaN
constant: false
type: Species
is: C00007
is: o2
initial concentration: NaN
has only substance units: false
name: o2
boundary condition: false
is: OXYGEN-MOLECULE
in compartment: 570126

R ARYLSULFAT DASH RXN
is: ARYLSULFAT-RXN
reversible: false
product: 608061
name: phenylsulfatase
product: 608049
reactant: 608025
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1598
reactant: 608037
fast: false

592066
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

571316
stoichiometry: 1.0
species: M MESO DASH DIAMINOPIMELATE LBRACKET C RBRACKET
type: SpeciesReference

575829
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

R SUCCGLUDESUCC DASH RXN
reactant: 612532
type: Reaction
product: 612556
notes: GENE_ASSOCIATION: ACIAD1289
product: 612568
is: SUCCGLUDESUCC-RXN
is: SGDS
reversible: false
fast: false
name: succinylglutamate desuccinylase
reactant: 612544

579103
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

604728
stoichiometry: 1.0
species: M BENZOATE LBRACKET P RBRACKET
type: SpeciesReference

R C18 COLON 1 LPAREN C9 RPAREN DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
fast: false
reactant: 600452
type: Reaction
product: 600476
reversible: false
name: hydroxyacyl-coa dehydrogenase (c18:1(c9))
product: 600464
is: OHACYL-COA-DEHYDROG-RXN
reactant: 600440

573711
stoichiometry: 1.0
species: M CYS LBRACKET C RBRACKET
type: SpeciesReference

M C18 COLON 0 DASH COA LBRACKET C RBRACKET
initial concentration: NaN
has only substance units: false
name: octadenoyl-coa
boundary condition: false
is: stcoa
in compartment: 570138
is: C00412
constant: false
initial amount: NaN
is: STEAROYL-COA
type: Species

R RXN0 DASH 383
notes: GENE_ASSOCIATION: ACIAD3065
fast: false
type: Reaction
is: NTPP4
reversible: false
is: RXN0-383
product: 609159
product: 609171
reactant: 609147
name: ctp pyrophosphorylase
reactant: 609135

M ACET LBRACKET E RBRACKET
boundary condition: false
name: acetate
in compartment: 570126
has only substance units: false
is: ACET
type: Species
is: ac
initial amount: NaN
constant: false
initial concentration: NaN
is: C00033

594660
stoichiometry: 1.0
species: M C8 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

570919
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: L-PHOSPHATIDATE_PL
type: Species

614535
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

R PHOSPHASERSYN DASH RXN
reactant: 605475
is: PHOSPHASERSYN-RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD3149
product: 605511
name: phosphatidylserine synthase
reactant: 605487
type: Reaction
product: 605499
reversible: false

M C10 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
name: 3-oxodecanoyl-acp
is: C05753
boundary condition: false
is: 3odecACP
initial amount: NaN
in compartment: 570138
type: Species
constant: false
has only substance units: false
initial concentration: NaN

589596
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

576033
reactant: 576045
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 3,4-dihydroxyphenylpropionate
type: Reaction

583701
stoichiometry: 0.4
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

584593
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 1302 LBRACKET C RBRACKET
boundary condition: false
is: CPD-1302
type: Species
name: 5-methyltetrahydropteroyltri-l-glutamate
initial concentration: NaN
initial amount: NaN
in compartment: 570138
has only substance units: false
is: mhpglu
is: C04489
constant: false

595586
stoichiometry: 1.0
species: M TYR LBRACKET E RBRACKET
type: SpeciesReference

582326
stoichiometry: 1.0
species: 570751
type: SpeciesReference

586278
stoichiometry: 1.0
species: M GLN DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

577743
stoichiometry: 1.0
species: M CPD DASH 104 LBRACKET P RBRACKET
type: SpeciesReference

M CPD DASH 3571 LBRACKET C RBRACKET
is: CPD-3571
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: tricarballylate
type: Species

615848
stoichiometry: 1.0
species: M GLY LBRACKET E RBRACKET
type: SpeciesReference

580358
stoichiometry: 1.0
species: M 3OH DASH 4P DASH OH DASH ALPHA DASH KETOBUTYRATE LBRACKET C RBRACKET
type: SpeciesReference

R HOMOSERDEHYDROG DASH RXN
reactant: 583495
product: 583507
is: HSDy
reversible: true
reactant: 583483
type: Reaction
name: homoserine dehydrogenase
product: 583519
fast: false
notes: GENE_ASSOCIATION: ACIAD0264
is: HOMOSERDEHYDROG-RXN

R CYTIDEAM2 DASH RXN
type: Reaction
name: cytidine deaminase
reversible: false
product: 578441
reactant: 578417
reactant: 578405
is: CYTIDEAM2-RXN
notes: GENE_ASSOCIATION: ACIAD3297 or ACIAD0204
fast: false
product: 578429
is: CYTD

617429
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

574830
stoichiometry: 1.0
species: M DETHIOBIOTIN LBRACKET C RBRACKET
type: SpeciesReference

607050
stoichiometry: 2.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET
type: SpeciesReference

R 5 PERIOD 5 PERIOD 1 PERIOD 2 DASH RXN
product: 590958
reactant: 590946
notes: GENE_ASSOCIATION: ACIAD1707
is: 5.5.1.2-RXN
fast: false
reversible: true
name: 3-carboxy-cis,cis-muconate cycloisomerase
type: Reaction

M CH3 DASH MALONATE DASH S DASH ALD LBRACKET C RBRACKET
name: methylmalonate-semialdehyde
constant: false
initial amount: NaN
is: CH3-MALONATE-S-ALD
in compartment: 570138
boundary condition: false
is: 2mop
is: C00349
type: Species
initial concentration: NaN
has only substance units: false

610388
stoichiometry: 1.0
species: M CYS LBRACKET C RBRACKET
type: SpeciesReference

M DCDP LBRACKET C RBRACKET
initial amount: NaN
is: dcdp
name: dcdp
boundary condition: false
constant: false
initial concentration: NaN
is: DCDP
in compartment: 570138
has only substance units: false
type: Species
is: C00705

588286
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

601210
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

583908
stoichiometry: 1.0
species: 570450
type: SpeciesReference

M LEU DASH TRNAS LBRACKET C RBRACKET
is: trnaleu
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
in compartment: 570138
name: leucine-trna
is: LEU-TRNAS
initial amount: NaN
is: C01645
type: Species

M PQQ LBRACKET P RBRACKET
is: PQQ
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570114
name: pqq
type: Species

M 2 DASH KETOGLUTARATE LBRACKET E RBRACKET
has only substance units: false
name: 2-oxoglutarate
is: akg
type: Species
boundary condition: false
is: C00026
in compartment: 570126
initial amount: NaN
is: 2-KETOGLUTARATE
constant: false
initial concentration: NaN

588899
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

602491
stoichiometry: 8.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

603946
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET
type: SpeciesReference

M C8 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
is: 3hoctACP
initial amount: NaN
constant: false
initial concentration: NaN
boundary condition: false
has only substance units: false
type: Species
name: 3-hydroxyoctanoyl-acp
in compartment: 570138
is: C04620

M DTDP DASH RHAMNOSE LBRACKET C RBRACKET
initial amount: NaN
type: Species
initial concentration: NaN
is: C03319
has only substance units: false
name: dtdp-rhamnose
is: DTDP-RHAMNOSE
in compartment: 570138
constant: false
is: dtdprmn
boundary condition: false

597332
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R 1 PERIOD 1 PERIOD 99 PERIOD 25 DASH RXN
type: Reaction
reactant: 594164
product: 594188
reversible: true
reactant: 594176
name: quinate dehydrogenase (pyrroloquinoline-quinone)
fast: false
product: 594200
notes: GENE_ASSOCIATION: ACIAD1716
is: 1.1.99.25-RXN

R C14 COLON 1 LPAREN C5 RPAREN DASH 3OXOCOA DASH THIOLASE DASH RXN
name: 3oxoacyl-coa thiolase (c14:1(c5))
type: Reaction
reactant: 590392
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
reversible: true
reactant: 590404
is: KETOACYLCOATHIOL-RXN
product: 590428
fast: false
product: 590416

574107
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

582906
stoichiometry: 1.0
species: M C18 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

587204
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

595514
stoichiometry: 1.0
species: M XANTHOSINE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

572976
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

593536
stoichiometry: 1.0
species: M PROPANENITRILE LBRACKET C RBRACKET
type: SpeciesReference

592402
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

R CHORISMATEMUT DASH RXN
product: 577647
reactant: 577635
notes: GENE_ASSOCIATION: ACIAD2223
is: CHORISMATEMUT-RXN
is: CHORM
fast: false
reversible: true
name: chorismate mutase
type: Reaction

592342
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET
type: SpeciesReference

604138
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

M PHE DASH TRNAS LBRACKET C RBRACKET
initial concentration: NaN
is: C01648
name: phenylalanine trna
in compartment: 570138
boundary condition: false
type: Species
constant: false
is: trnaphe
initial amount: NaN
is: PHE-TRNAS
has only substance units: false

R L DASH ASPARTATE DASH OXID DASH RXN
reversible: false
name: l-aspartate oxidase (producing iminoaspartate)
fast: false
notes: GENE_ASSOCIATION: ACIAD2587
is: ASPO6
product: 571858
reactant: 571822
is: L-ASPARTATE-OXID-RXN
product: 571846
type: Reaction
reactant: 571834

R RXN0 DASH 385
reversible: false
reactant: 609231
type: Reaction
name: dgtp pyrophosphorylase
is: RXN0-385
fast: false
reactant: 609243
notes: GENE_ASSOCIATION: ACIAD3065
product: 609267
is: NTPP1
product: 609255

M CHARGED DASH TYR DASH TRNAS LBRACKET C RBRACKET
is: tyrtrna
is: CHARGED-TYR-TRNAS
boundary condition: false
type: Species
initial concentration: NaN
name: charged tyrosine trna
initial amount: NaN
constant: false
is: C02839
has only substance units: false
in compartment: 570138

583999
stoichiometry: 1.0
species: M 3 DASH OHMYRISTOYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

603718
stoichiometry: 1.0
species: M 4 DASH AMINO DASH 4 DASH DEOXYCHORISMATE LBRACKET C RBRACKET
type: SpeciesReference

616474
stoichiometry: 1.0
species: M RIBOSE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

585073
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1949107276#R_C8_COLON_0_DASH_CARBOXY3HYDROXYCOA_DASH_DEHYDROGENASE_DASH_RXN
product: 580894
reactant: 580882
reactant: 580870
is: RXNIM-6202
name: dicarboxylate hydroxyacyl-coa dehydrogenase (c8:0)
notes: GENE_ASSOCIATION: ACIAD1690
fast: false
product: 580906
reversible: false
type: Reaction

M C14 COLON 0 DASH ACP LBRACKET C RBRACKET
has only substance units: false
boundary condition: false
name: tetradecanoyl-acp
initial concentration: NaN
initial amount: NaN
type: Species
in compartment: 570138
is: myrsACP
is: C05761
constant: false
is: MYRISTOYL-ACP

M 2 DASH ACETO DASH 2 DASH HYDROXY DASH BUTYRATE LBRACKET C RBRACKET
boundary condition: false
is: 2ahbut
type: Species
has only substance units: false
is: 2-ACETO-2-HYDROXY-BUTYRATE
in compartment: 570138
initial amount: NaN
is: C06006
constant: false
name: 2-aceto-2-hydroxy-butyrate
initial concentration: NaN

R PGLYCDEHYDROG DASH RXN
reversible: true
reactant: 618550
fast: false
notes: GENE_ASSOCIATION: ACIAD3302
is: PGCD
is: PGLYCDEHYDROG-RXN
type: Reaction
reactant: 618538
product: 618562
product: 618574
name: phosphoglycerate dehydrogenase

R C10 COLON 0 DASH COA DASH DEHYDROGENASE DASH RXN
product: 613446
product: 613458
name: acyl-coa dehydrogenase (c10:0)
reactant: 613422
is: ACYLCOADEHYDROG-RXN
reactant: 613434
type: Reaction
is: ACOAD4f
fast: false
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566
reversible: false

M 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET
is: C00156
in compartment: 570138
initial concentration: NaN
initial amount: NaN
boundary condition: false
has only substance units: false
type: Species
constant: false
is: 4-hydroxybenzoate
name: p-hydroxybenzoate
is: 4hbz

578549
stoichiometry: 1.0
species: M L DASH PANTOATE LBRACKET C RBRACKET
type: SpeciesReference

600187
stoichiometry: 1.0
species: M DIHYDROXY DASH ACETONE DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

R 1 PERIOD 5 PERIOD 1 PERIOD 29 DASH RXN
is: FLDO
reactant: 609425
product: 609449
reversible: true
fast: false
product: 609437
is: 1.5.1.29-RXN
name: fmn reductase
notes: GENE_ASSOCIATION: ACIAD3470
reactant: 609412
type: Reaction

R ALLANTOICASE DASH RXN
product: 580502
is: ALLTAH
reactant: 580466
type: Reaction
reactant: 580478
notes: GENE_ASSOCIATION: ACIAD3541
name: allantoicase
reversible: true
is: ALLANTOICASE-RXN
fast: false
product: 580490

R THREDEHYD DASH RXN
name: threonine dehydratase
fast: false
product: 573411
product: 573399
is: THRD L
is: THREDEHYD-RXN
reactant: 573387
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1357
reversible: false

M GLUTARATE LBRACKET C RBRACKET
name: glutarate
constant: false
has only substance units: false
initial concentration: NaN
is: C00489
boundary condition: false
in compartment: 570138
initial amount: NaN
is: GLUTARATE
type: Species

592414
stoichiometry: 1.0
species: M CHARGED DASH GLY DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

M PURINE LBRACKET E RBRACKET
is: C15587
type: Species
has only substance units: false
initial concentration: NaN
boundary condition: false
constant: false
is: PURINE
name: purine
in compartment: 570126
initial amount: NaN

611339
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

613506
stoichiometry: 1.0
species: M D DASH GLUCARATE LBRACKET E RBRACKET
type: SpeciesReference

581472
stoichiometry: 1.0
species: 571100
type: SpeciesReference

587180
stoichiometry: 1.0
species: M GLY LBRACKET C RBRACKET
type: SpeciesReference

607556
stoichiometry: 0.61
species: 571232
type: SpeciesReference

612820
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R RXN0 DASH 384
is: NTPP5
reactant: 609183
product: 609207
reactant: 609195
notes: GENE_ASSOCIATION: ACIAD3065
fast: false
name: datp pyrophosphorylase
reversible: false
product: 609219
is: RXN0-384
type: Reaction

617151
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

611170
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

596454
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M N DASH ACETYL DASH GLUTAMYL DASH P LBRACKET C RBRACKET
type: Species
initial concentration: NaN
constant: false
initial amount: NaN
is: N-ACETYL-GLUTAMYL-P
is: C04133
name: n-acetylglutamyl-phosphate
is: acg5p
boundary condition: false
in compartment: 570138
has only substance units: false

575589
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

605246
stoichiometry: 1.0
species: M FE PLUS 2 LBRACKET E RBRACKET
type: SpeciesReference

M 3 DASH P DASH SERINE LBRACKET C RBRACKET
name: 3-phospho-serine
initial concentration: NaN
is: 3-P-SERINE
constant: false
initial amount: NaN
boundary condition: false
in compartment: 570138
has only substance units: false
is: pser-L
type: Species
is: C01005

R C6 COLON 0 DASH CARBOXY DASH COATRANSFERASE DASH RXN
name: dicarboxylate acyl coa transferase (c6:0)
is: RXNIM-6198
notes: GENE_ASSOCIATION: ACIAD1695 and ACIAD1696
fast: false
type: Reaction
product: 616005
reversible: false
reactant: 615968
product: 615981
reactant: 615944
product: 615993
reactant: 615956

571942
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

M AMP LBRACKET C RBRACKET
initial amount: NaN
initial concentration: NaN
constant: false
type: Species
is: AMP
name: amp
in compartment: 570138
is: amp
is: C00020
has only substance units: false
boundary condition: false

572892
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

592042
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

608652
stoichiometry: 0.01
species: M TRP DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

613652
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

615692
stoichiometry: 1.0
species: M FORMATE LBRACKET C RBRACKET
type: SpeciesReference

609546
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

618200
stoichiometry: 1.0
species: M PURINE LBRACKET E RBRACKET
type: SpeciesReference

582966
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

614236
stoichiometry: 1.0
species: M SULFATE LBRACKET E RBRACKET
type: SpeciesReference

595212
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

577406
stoichiometry: 1.0
species: M AICAR LBRACKET C RBRACKET
type: SpeciesReference

573927
stoichiometry: 1.0
species: M ASN LBRACKET E RBRACKET
type: SpeciesReference

R RXNIM DASH 3886
type: Reaction
reactant: 576587
fast: false
is: GLCDpp
is: RXNIM-3886
notes: GENE_ASSOCIATION: ACIAD2983
name: glucose dehydrogenase [pyrroloquinoline-quinone]
reversible: false
reactant: 576575
product: 576599
product: 576611

614470
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

586988
stoichiometry: 1.0
species: M CHORISMATE LBRACKET C RBRACKET
type: SpeciesReference

R ISOCIT DASH CLEAV DASH RXN
fast: false
reactant: 598501
name: isocitrate lyase
reversible: false
product: 598525
product: 598513
is: ICL
type: Reaction
is: ISOCIT-CLEAV-RXN
notes: GENE_ASSOCIATION: ACIAD1084

585290
stoichiometry: 1.0
species: M NA PLUS LBRACKET E RBRACKET
type: SpeciesReference

607772
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

603008
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

M GLC DASH 1 DASH P LBRACKET C RBRACKET
initial amount: NaN
is: g1p
is: C00103
constant: false
type: Species
boundary condition: false
in compartment: 570138
has only substance units: false
name: glucose-1-phosphate
is: GLC-1-P
initial concentration: NaN

M DEOXYADENOSINE LBRACKET C RBRACKET
initial concentration: NaN
is: dad-2
is: DEOXYADENOSINE
name: deoxyadenosine
initial amount: NaN
is: C00559
constant: false
has only substance units: false
in compartment: 570138
type: Species
boundary condition: false

573121
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

609643
stoichiometry: 1.0
species: M CPD DASH 592 LBRACKET C RBRACKET
type: SpeciesReference

592499
stoichiometry: 1.0
species: M GUANINE LBRACKET C RBRACKET
type: SpeciesReference

R RXN0 DASH 2044
reactant: 603754
name: 3-hydroxyadipyl-coa dehydrogenase
product: 603790
reactant: 603766
product: 603778
notes: GENE_ASSOCIATION: ACIAD1690
is: RXN0-2044
fast: false
reversible: false
type: Reaction

607122
product: 607146
reactant: 607134
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of 3,4-dihydroxyphenylpropionate [extraorganism;cytosol](passive)
type: Reaction

605619
stoichiometry: 1.0
species: 570150
type: SpeciesReference

M NADH LBRACKET C RBRACKET
boundary condition: false
in compartment: 570138
initial amount: NaN
is: nadh
has only substance units: false
constant: false
is: NADH
is: C00004
name: nadh
initial concentration: NaN
type: Species

571438
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

583423
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET
type: SpeciesReference

591669
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

M TMP LBRACKET C RBRACKET
is: C00364
name: dtmp
boundary condition: false
in compartment: 570138
type: Species
initial amount: NaN
is: TMP
is: dtmp
initial concentration: NaN
has only substance units: false
constant: false

593923
stoichiometry: 1.0
species: M DTDP DASH DEOH DASH DEOXY DASH GLUCOSE LBRACKET C RBRACKET
type: SpeciesReference

R DAMP DASH NUCLEOTIDASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227
is: NTD6
product: 575178
reactant: 575166
type: Reaction
name: damp nucleotidase
fast: false
reactant: 575154
product: 575190
is: RXNIM-6196
reversible: false

R HISTIDINE DASH DASH TRNA DASH LIGASE DASH RXN
fast: false
reactant: 615284
name: histidine--trna ligase
product: 615296
notes: GENE_ASSOCIATION: ACIAD0562
is: HISTRS
reactant: 615260
reactant: 615272
product: 615320
product: 615308
reversible: false
is: HISTIDINE--TRNA-LIGASE-RXN
type: Reaction

600824
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

R GLYRIBONUCSYN DASH RXN
notes: GENE_ASSOCIATION: ACIAD2448
product: 587217
product: 587229
product: 587204
name: phosphoribosylamine--glycine ligase
is: PRAGSr
reactant: 587180
type: Reaction
fast: false
reactant: 587192
is: GLYRIBONUCSYN-RXN
reactant: 587168
reversible: false

577274
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET
type: SpeciesReference

588802
stoichiometry: 1.0
species: M UTP LBRACKET C RBRACKET
type: SpeciesReference

R HOMOCYSMET DASH RXN
product: 605547
is: METS
type: Reaction
name: 5-methyltetrahydropteroyltriglutamate--homocysteine s-methyltransferase
product: 605559
reversible: false
reactant: 605535
notes: GENE_ASSOCIATION: ACIAD3523
is: HOMOCYSMET-RXN
fast: false
reactant: 605523

585665
stoichiometry: 1.0
species: M C6 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

584209
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

M 4 DASH HYDROXYBENZOATE LBRACKET E RBRACKET
is: 4-hydroxybenzoate
is: 4hbz
initial amount: NaN
initial concentration: NaN
in compartment: 570126
type: Species
constant: false
has only substance units: false
is: C00156
name: p-hydroxybenzoate
boundary condition: false

M 4 DASH HYDROXY DASH BENZYL DASH ALCOHOL LBRACKET E RBRACKET
is: 4-HYDROXY-BENZYL-ALCOHOL
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: 4-hydroxybenzyl alcohol
type: Species

R C5 COLON 0 DASH COA DASH DEHYDROGENASE DASH RXN
type: Reaction
is: ACYLCOADEHYDROG-RXN
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566
product: 616779
reversible: false
reactant: 616755
fast: false
product: 616767
reactant: 616742
name: acyl-coa dehydrogenase (c5:0)

R F16ALDOLASE DASH RXN
is: FBA
type: Reaction
reversible: true
reactant: 591970
notes: GENE_ASSOCIATION: ACIAD1925
is: F16ALDOLASE-RXN
name: fructose-bisphosphate aldolase
fast: false
reactant: 591958
product: 591982

R C14 COLON 0 DASH COA DASH THIOLASE DASH RXN
reactant: 600885
is: THIOESTER-RXN
reactant: 600872
type: Reaction
fast: false
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
is: FACOAE140
product: 600897
reversible: false
product: 600909
name: acyl-coa thiolase (c14:0)

R DUTP DASH PYROP DASH RXN
product: 594346
reversible: false
notes: GENE_ASSOCIATION: ACIAD0901
is: DUTPDP
name: dutp pyrophosphatase
type: Reaction
product: 594333
reactant: 594321
reactant: 594309
is: DUTP-PYROP-RXN
fast: false

593862
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

610304
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

594128
stoichiometry: 1.0
species: M 5 DASH PHOSPHORIBOSYL DASH N DASH FORMYLGLYCINEAMIDINE LBRACKET C RBRACKET
type: SpeciesReference

613592
stoichiometry: 1.0
species: M D DASH LACTATE LBRACKET C RBRACKET
type: SpeciesReference

608724
stoichiometry: 0.08
species: M VAL DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

600752
reactant: 600764
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of gluconate
type: Reaction

577515
stoichiometry: 1.0
species: M WATER LBRACKET P RBRACKET
type: SpeciesReference

614392
reactant: 614405
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of propionate
type: Reaction

M 5 DASH AMINO DASH LEVULINATE LBRACKET C RBRACKET
boundary condition: false
in compartment: 570138
has only substance units: false
type: Species
initial amount: NaN
initial concentration: NaN
constant: false
is: C00430
is: 5aop
is: 5-AMINO-LEVULINATE
name: 5-amino-levulinate

574722
stoichiometry: 1.0
species: M DIACYLGLYCEROL LBRACKET C RBRACKET
type: SpeciesReference

M ACETONE LBRACKET C RBRACKET
initial concentration: NaN
is: acetone
is: ACETONE
boundary condition: false
has only substance units: false
type: Species
constant: false
in compartment: 570138
is: C00207
name: acetone
initial amount: NaN

M URACIL LBRACKET C RBRACKET
is: C00106
in compartment: 570138
name: uracil
initial concentration: NaN
type: Species
constant: false
is: ura
boundary condition: false
has only substance units: false
is: URACIL
initial amount: NaN

593270
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

618887
stoichiometry: 1.0
species: M UREA LBRACKET C RBRACKET
type: SpeciesReference

604512
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

590645
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

R GART DASH RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD2635
product: 592330
reactant: 592306
reactant: 592318
product: 592342
is: GARFT
type: Reaction
name: phosphoribosylglycinamide formyltransferase
reversible: false
is: GART-RXN

M BETAINE LBRACKET C RBRACKET
is: BETAINE
type: Species
is: glyb
initial concentration: NaN
has only substance units: false
boundary condition: false
constant: false
initial amount: NaN
is: C00719
in compartment: 570138
name: betaine

570282
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-oxohexadec-7-enoyl-acp
type: Species

573795
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

593874
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

607266
stoichiometry: 1.0
species: M ASN LBRACKET C RBRACKET
type: SpeciesReference

618429
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

576466
stoichiometry: 0.1
species: M C18 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

M C16 COLON 0 DASH ACP LBRACKET C RBRACKET
constant: false
initial amount: NaN
type: Species
has only substance units: false
name: hexadecanoyl-acp
boundary condition: false
initial concentration: NaN
is: palmACP
in compartment: 570138
is: C05764

601439
stoichiometry: 1.0
species: M CPD DASH 659 LBRACKET C RBRACKET
type: SpeciesReference

570992
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 7-carboxy-3-oxoheptanoyl-coa
type: Species

617272
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

577599
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R GDPKIN DASH RXN
notes: GENE_ASSOCIATION: ACIAD0556
product: 592054
is: NDPK1
fast: false
type: Reaction
is: GDPKIN-RXN
reactant: 592042
reactant: 592030
reversible: true
name: gdp kinase
product: 592066

575420
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

589512
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

607832
stoichiometry: 1.0
species: M GUANOSINE LBRACKET C RBRACKET
type: SpeciesReference

M CIS DASH ACONITATE LBRACKET C RBRACKET
constant: false
name: cis-aconitate
initial concentration: NaN
in compartment: 570138
is: C00417
boundary condition: false
is: CIS-ACONITATE
is: acon-C
has only substance units: false
initial amount: NaN
type: Species

618128
reactant: 618140
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of hexadecanoate
type: Reaction

583279
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

591741
stoichiometry: 1.0
species: M L DASH PANTOATE LBRACKET C RBRACKET
type: SpeciesReference

R PANTOATE DASH BETA DASH ALANINE DASH LIG DASH RXN
is: PANTOATE-BETA-ALANINE-LIG-RXN
name: pantoate--beta-alanine ligase
fast: false
reactant: 591741
type: Reaction
product: 591789
product: 591765
notes: GENE_ASSOCIATION: ACIAD3060
product: 591777
reactant: 591729
reversible: true
is: PANTS
reactant: 591753

R C8 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
is: ENOYL-COA-HYDRAT-RXN
reversible: false
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
reactant: 590113
is: ECOAH3
type: Reaction
name: enoyl-coa hydratase (c8:0)
reactant: 590126
fast: false
product: 590138

R DIMETHUROPORDEHYDROG DASH RXN
fast: false
product: 617706
name: precorrin-2 oxidase
is: SHCHD2
reactant: 617694
type: Reaction
is: DIMETHUROPORDEHYDROG-RXN
reactant: 617682
reversible: false
product: 617718
notes: GENE_ASSOCIATION: ACIAD2934

577166
stoichiometry: 1.0
species: M BENZYL DASH ALCOHOL LBRACKET E RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH CAFFEATE DASH PERIP
product: 584197
reactant: 584173
is: TRANS-RXNIM-5915
name: transport of caffeate [periplasm;cytosol](secondary symport)
type: Reaction
product: 584209
notes: GENE_ASSOCIATION: ACIAD1709
reactant: 584185
fast: false
reversible: true

R ISPH2 DASH RXN
name: 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate reductase (ipdp)
fast: false
type: Reaction
product: 595236
product: 595212
is: IPDPS
is: ISPH2-RXN
reactant: 595188
product: 595224
reactant: 595200
notes: GENE_ASSOCIATION: ACIAD3322
reversible: true

596117
reactant: 596129
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of glutarate
type: Reaction

616693
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

M L DASH CITRULLINE LBRACKET C RBRACKET
in compartment: 570138
initial concentration: NaN
is: citr-L
is: C00327
is: L-CITRULLINE
name: citrulline
boundary condition: false
initial amount: NaN
has only substance units: false
type: Species
constant: false

R TRANS DASH RXN DASH C16 COLON 0
reversible: true
product: 583027
reactant: 583003
is: TRANS-RXNIM-5726
reactant: 582991
product: 583015
type: Reaction
fast: false
name: transport of hexadecanoate [extraorganism;cytosol](secondary symport)
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392

589668
stoichiometry: 1.0
species: M 2C DASH METH DASH D DASH ERYTHRITOL DASH CYCLODIPHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

593318
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

612134
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

609437
stoichiometry: 1.0
species: M FMN LBRACKET C RBRACKET
type: SpeciesReference

M PHE LBRACKET C RBRACKET
has only substance units: false
is: PHE
name: l-phenylalanine
is: C00079
initial concentration: NaN
constant: false
initial amount: NaN
boundary condition: false
is: phe-L
in compartment: 570138
type: Species

574614
stoichiometry: 1.0
species: M DTDP DASH RHAMNOSE LBRACKET C RBRACKET
type: SpeciesReference

M C6 COLON 0 DASH COA LBRACKET C RBRACKET
type: Species
boundary condition: false
in compartment: 570138
is: HEXANOYL-COA
constant: false
has only substance units: false
is: C05270
is: hxcoa
name: hexanoyl-coa
initial concentration: NaN
initial amount: NaN

586832
stoichiometry: 1.0
species: M PROPIONATE LBRACKET C RBRACKET
type: SpeciesReference

591898
stoichiometry: 1.0
species: 571196
type: SpeciesReference

R TRANS DASH RXN DASH L DASH ASPARTATE
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: ACIAD1026 or ACIAD2227 or ACIAD1191 or ACIAD1866
is: TRANS-RXN-122A
reactant: 606666
product: 606702
product: 606690
reactant: 606678
name: transport of l-aspartate [extraorganism;cytosol](secondary symport)
fast: false

618779
stoichiometry: 1.0
species: 570643
type: SpeciesReference

591813
stoichiometry: 1.0
species: M BENZOATE LBRACKET E RBRACKET
type: SpeciesReference

M THR LBRACKET C RBRACKET
initial amount: NaN
name: l-threonine
is: C00188
constant: false
is: THR
has only substance units: false
initial concentration: NaN
in compartment: 570138
boundary condition: false
type: Species
is: thr-L

576936
stoichiometry: 1.0
species: M ARABINOSE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

R GLUTARYL DASH COA DASH DEHYDROG DASH RXN
reversible: false
product: 593102
fast: false
reactant: 593078
reactant: 593090
product: 593114
name: glutaryl-coa dehydrogenase
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1693
is: GLUTARYL-COA-DEHYDROG-RXN

586904
reactant: 586929
reactant: 586965
reactant: 586940
reactant: 586917
type: Reaction
notes: GENE_ASSOCIATION:
name: generic acyl-acp of triacylglycerol assembly
product: 586977
fast: false
reactant: 586952
reversible: true

R CYSTEINE DASH DASH TRNA DASH LIGASE DASH RXN
reversible: false
fast: false
notes: GENE_ASSOCIATION: ACIAD1481
reactant: 592246
is: CYSTRS
is: CYSTEINE--TRNA-LIGASE-RXN
reactant: 592234
product: 592282
type: Reaction
product: 592294
product: 592270
reactant: 592258
name: cysteine--trna ligase

575985
stoichiometry: 1.0
species: M UDP DASH GLUCOSE LBRACKET C RBRACKET
type: SpeciesReference

M C5 COLON 0 LBRACKET E RBRACKET
name: pentanoate
initial amount: NaN
constant: false
type: Species
boundary condition: false
initial concentration: NaN
in compartment: 570126
has only substance units: false
is: C00803
is: VALERATE

596755
stoichiometry: 1.0
species: 570944
type: SpeciesReference

584941
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

R 3 DASH CH3 DASH 2 DASH OXOBUTANOATE DASH OH DASH CH3 DASH XFER DASH RXN
type: Reaction
reactant: 602419
is: 3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN
reactant: 602407
product: 602443
reactant: 602394
notes: GENE_ASSOCIATION: ACIAD3061
product: 602431
name: 3-methyl-2-oxobutanoate hydroxymethyltransferase
is: MOHMT
fast: false
reversible: false

M THYMIDINE LBRACKET C RBRACKET
initial concentration: NaN
has only substance units: false
is: thymd
is: THYMIDINE
type: Species
boundary condition: false
initial amount: NaN
constant: false
name: thymidine
is: C00214
in compartment: 570138

573230
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

615584
stoichiometry: 1.0
species: M GLYCOLLATE LBRACKET C RBRACKET
type: SpeciesReference

M CPDIM DASH 6115 LBRACKET E RBRACKET
is: CPDIM-6115
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: 4-hydroxybenzylacetate
type: Species

609752
stoichiometry: 1.0
species: M L DASH ASPARTATE DASH SEMIALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

606173
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

R HISTAMINOTRANS DASH RXN
fast: false
name: histidinol-phosphate aminotransferase
reactant: 607182
notes: GENE_ASSOCIATION: ACIAD0664
type: Reaction
is: HSTPT
product: 607218
product: 607206
is: HISTAMINOTRANS-RXN
reversible: true
reactant: 607194

R C18 COLON 1 LPAREN C9 RPAREN DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
product: 618526
reactant: 618514
reactant: 618502
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
is: ENOYL-COA-HYDRAT-RXN
fast: false
reversible: false
name: enoyl-coa hydratase (c18:1(c9))
type: Reaction

R LPAREN R COMMA R RPAREN DASH BUTANEDIOL DASH DEHYDROGENASE DASH RXN
type: Reaction
reactant: 575925
reactant: 575913
fast: false
product: 575937
name: (r,r)-butanediol dehydrogenase
notes: GENE_ASSOCIATION: ACIAD1021
product: 575949
is: |(R,R)-BUTANEDIOL-DEHYDROGENASE-RXN|
reversible: true

M GLT LBRACKET C RBRACKET
name: l-glutamate
is: GLT
is: C00025
initial amount: NaN
in compartment: 570138
boundary condition: false
is: glu-L
type: Species
initial concentration: NaN
has only substance units: false
constant: false

M URIDINE LBRACKET E RBRACKET
boundary condition: false
is: C00299
type: Species
initial concentration: NaN
in compartment: 570126
has only substance units: false
constant: false
initial amount: NaN
is: uri
is: URIDINE
name: uridine

R ISOCITDEH DASH RXN
product: 571606
is: ICDHyr
type: Reaction
reactant: 571582
notes: GENE_ASSOCIATION: ACIAD1187 or ACIAD1190
is: ISOCITDEH-RXN
product: 571618
reversible: false
product: 571594
name: isocitrate dehydrogenase (nadp+)
fast: false
reactant: 571570

591958
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET
type: SpeciesReference

585181
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

587649
stoichiometry: 1.0
species: M UNDECAPRENYL DASH P LBRACKET C RBRACKET
type: SpeciesReference

576358
stoichiometry: 1.0
species: M CPDIM DASH 6112 LBRACKET C RBRACKET
type: SpeciesReference

606029
product: 606053
reactant: 606041
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of 4-hydroxybenzyl alcohol [extraorganism;cytosol](passive)
type: Reaction

584317
stoichiometry: 1.0
species: M DEOXYXYLULOSE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

590861
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

574325
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

R 2OXOGLUTARATEDEH DASH RXN
fast: false
product: 614840
reactant: 614792
reactant: 614804
notes: GENE_ASSOCIATION: ACIAD2876 and ACIAD2875 and ACIAD2874
reversible: false
is: 2OXOGLUTARATEDEH-RXN
reactant: 614816
product: 614828
is: AKGDH
product: 614852
type: Reaction
name: 2-oxogluterate dehydrogenase

594924
stoichiometry: 1.0
species: M CPD DASH 377 LBRACKET C RBRACKET
type: SpeciesReference

M ACETYL DASH COA LBRACKET C RBRACKET
is: ACETYL-COA
is: C00024
in compartment: 570138
initial amount: NaN
name: acetyl-coa
boundary condition: false
initial concentration: NaN
is: accoa
constant: false
has only substance units: false
type: Species

585773
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

571365
stoichiometry: 1.0
species: M DEPHOSPHO DASH COA LBRACKET C RBRACKET
type: SpeciesReference

590717
product: 590741
reactant: 590729
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of acetate [extraorganism;cytosol](passive)
type: Reaction

M 4 DASH HYDROXYBENZALDEHYDE LBRACKET C RBRACKET
is: C00633
in compartment: 570138
type: Species
constant: false
boundary condition: false
name: 4-hydroxybenzaldehyde
initial concentration: NaN
has only substance units: false
is: 4-HYDROXYBENZALDEHYDE
initial amount: NaN

573687
stoichiometry: 1.0
species: M L DASH ORNITHINE LBRACKET C RBRACKET
type: SpeciesReference

614743
stoichiometry: 1.0
species: M ADIPATE LBRACKET E RBRACKET
type: SpeciesReference

588130
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

571654
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

587073
stoichiometry: 1.0
species: M DIAMINONONANOATE LBRACKET C RBRACKET
type: SpeciesReference

R LUMAZINESYN DASH RXN
reactant: 605138
fast: false
is: LUMAZINESYN-RXN
product: 605186
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3571
is: RBFSa
reversible: false
product: 605174
product: 605162
name: lumazine synthase
reactant: 605150

R PRIBFAICARPISOM DASH RXN
product: 589812
reactant: 589800
notes: GENE_ASSOCIATION: ACIAD3398
is: PRIBFAICARPISOM-RXN
is: PRMICI
fast: false
reversible: false
name: n-(5'-phospho-d-ribosylformimino)-5-amino-1-(5''-phosphoribosyl)-4- imidazole carboxamide isomerase
type: Reaction

602407
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

584881
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

613231
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

R ISOCHORMAT DASH RXN
fast: false
name: isochorismatase
product: 582508
reversible: true
reactant: 582484
reactant: 582472
type: Reaction
product: 582496
is: ISOCHORMAT-RXN
is: ICHORT
notes: GENE_ASSOCIATION: ACIAD0028 or ACIAD3473 or ACIAD2775

589019
reactant: 589031
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of beta-d-glucose
type: Reaction

574059
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

584038
stoichiometry: 1.0
species: 570186
type: SpeciesReference

579296
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET
type: SpeciesReference

611062
stoichiometry: 40.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

606750
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

570883
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: OXALACETIC_ACID
type: Species

M HYDROXY DASH METHYL DASH BUTENYL DASH DIP LBRACKET C RBRACKET
boundary condition: false
constant: false
in compartment: 570138
has only substance units: false
initial amount: NaN
name: 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate
is: HYDROXY-METHYL-BUTENYL-DIP
is: h2mb4p
initial concentration: NaN
is: C11811
type: Species

575649
stoichiometry: 1.0
species: M CPD DASH 302 LBRACKET E RBRACKET
type: SpeciesReference

617381
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

M PHOSPHO DASH HYDROXY DASH THREONINE LBRACKET C RBRACKET
in compartment: 570138
constant: false
type: Species
is: phthr
has only substance units: false
is: C06055
boundary condition: false
name: phospho-hydroxy-threonine
initial amount: NaN
initial concentration: NaN
is: PHOSPHO-HYDROXY-THREONINE

618538
stoichiometry: 1.0
species: M G3P LBRACKET C RBRACKET
type: SpeciesReference

587937
reactant: 587949
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of taurine
type: Reaction

610906
stoichiometry: 0.003
species: 570583
type: SpeciesReference

M DTDP DASH DEOH DASH DEOXY DASH MANNOSE LBRACKET C RBRACKET
initial concentration: NaN
is: DTDP-DEOH-DEOXY-MANNOSE
initial amount: NaN
boundary condition: false
is: C00688
name: dtdp-4-dehydro-6-deoxy-l-mannose
in compartment: 570138
constant: false
type: Species
has only substance units: false
is: dtdp4d6dm

615788
stoichiometry: 1.0
species: M 2 DASH ACETO DASH 2 DASH HYDROXY DASH BUTYRATE LBRACKET C RBRACKET
type: SpeciesReference

R PORPHOBILSYNTH DASH RXN
name: porphobilinogen synthase
fast: false
is: PORPHOBILSYNTH-RXN
type: Reaction
reactant: 592717
notes: GENE_ASSOCIATION: ACIAD0923
product: 592729
product: 592741
reversible: true
is: PPBNGS

592150
stoichiometry: 1.0
species: M OX DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
type: SpeciesReference

586783
stoichiometry: 1.0
species: M GLUCOSAMINE DASH 1P LBRACKET C RBRACKET
type: SpeciesReference

603416
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

M UDP DASH N DASH ACETYL DASH D DASH GLUCOSAMINE LBRACKET C RBRACKET
initial concentration: NaN
boundary condition: false
constant: false
is: uacgam
is: UDP-N-ACETYL-D-GLUCOSAMINE
type: Species
is: C00043
initial amount: NaN
name: udp-n-acetyl-d-glucosamine
has only substance units: false
in compartment: 570138

614804
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

M ARG DASH TRNAS LBRACKET C RBRACKET
has only substance units: false
is: C01636
type: Species
is: trnaarg
boundary condition: false
constant: false
name: arginine trna
initial concentration: NaN
is: ARG-TRNAS
initial amount: NaN
in compartment: 570138

M C18 COLON 0 LBRACKET E RBRACKET
is: STEARIC ACID
initial amount: NaN
type: Species
is: ocdca
is: C01530
constant: false
has only substance units: false
name: octadenoate
initial concentration: NaN
boundary condition: false
in compartment: 570126

603080
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

M C4 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
is: C04246
initial concentration: NaN
initial amount: NaN
name: trans-but-2-enoyl-acp
type: Species
constant: false
in compartment: 570138
boundary condition: false
is: but2eACP
has only substance units: false

582266
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

598791
stoichiometry: 1.0
species: M GLT LBRACKET E RBRACKET
type: SpeciesReference

577852
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

597440
stoichiometry: 1.0
species: M ACETALD LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH CARBON DASH DIOXIDE
product: 613943
reactant: 613931
notes: GENE_ASSOCIATION:
is: CO2tpp
fast: false
reversible: true
name: transport of co2 [extraorganism;cytosol](passive)
type: Reaction

575202
stoichiometry: 1.0
species: M OH DASH PYR LBRACKET C RBRACKET
type: SpeciesReference

595188
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R VALINE DASH DASH TRNA DASH LIGASE DASH RXN
is: VALINE--TRNA-LIGASE-RXN
name: valine--trna ligase
is: VALTRS
product: 613835
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2950
reactant: 613786
fast: false
reactant: 613810
reversible: false
reactant: 613798
product: 613822
product: 613847

603140
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

R ALKANAL DASH MONOOXYGENASE DASH LPAREN FMN DASH LINKED RPAREN DASH RXN
reactant: 572230
reversible: false
fast: false
name: octanal monooxygenase (fmn-linked)
product: 572279
product: 572267
reactant: 572243
type: Reaction
product: 572291
notes: GENE_ASSOCIATION: ACIAD1830
reactant: 572255
is: |ALKANAL-MONOOXYGENASE-(FMN-LINKED)-RXN|

M ACETOIN LBRACKET C RBRACKET
initial concentration: NaN
initial amount: NaN
type: Species
boundary condition: false
constant: false
name: acetoin
is: actn-R
is: C00466
in compartment: 570138
is: ACETOIN
has only substance units: false

575082
stoichiometry: 1.0
species: M MANNOSE DASH 6P LBRACKET C RBRACKET
type: SpeciesReference

M CHARGED DASH PHE DASH TRNAS LBRACKET C RBRACKET
type: Species
is: C03511
in compartment: 570138
has only substance units: false
boundary condition: false
is: phetrna
initial amount: NaN
name: charged phenylalanine trna
is: CHARGED-PHE-TRNAS
initial concentration: NaN
constant: false

602262
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

614124
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

M CAFFEATE LBRACKET E RBRACKET
initial amount: NaN
is: C01481
type: Species
constant: false
in compartment: 570126
name: caffeate
initial concentration: NaN
boundary condition: false
has only substance units: false
is: CAFFEATE

R RXN DASH 2
reactant: 605390
type: Reaction
product: 605439
product: 605415
name: vanillate o-demethylase oxygenase
product: 605427
notes: GENE_ASSOCIATION: ACIAD0979 and ACIAD0980
fast: false
reversible: false
product: 605402
is: RXN-2
reactant: 605366
reactant: 605378

M ACETYL DASH GLU LBRACKET C RBRACKET
type: Species
name: n-acetyl-l-glutamate
has only substance units: false
boundary condition: false
constant: false
initial amount: NaN
is: acglu
is: ACETYL-GLU
is: C00624
initial concentration: NaN
in compartment: 570138

592826
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET
type: SpeciesReference

590584
stoichiometry: 1.0
species: M TRANS DASH FERULOYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

602190
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

R C14 COLON 0 DASH 2ENOYLACP DASH REDUCTASE DASH RXN
fast: false
is: EAR140x
product: 586374
notes: GENE_ASSOCIATION: ACIAD3116
name: 2enoyl-acp reductase (c14:0)
reversible: false
reactant: 586362
type: Reaction
reactant: 586350
product: 586386
is: ENOYL-ACP-REDUCT-NADH-RXN

580954
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

592765
stoichiometry: 1.0
species: M PHE LBRACKET E RBRACKET
type: SpeciesReference

603368
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

573603
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

586566
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET E RBRACKET
type: SpeciesReference

575901
stoichiometry: 1.0
species: M GLUTAMATE DASH 1 DASH SEMIALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

617043
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

610846
stoichiometry: 1.0
species: M C8 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

605354
stoichiometry: 1.0
species: M HOMO DASH CYS LBRACKET C RBRACKET
type: SpeciesReference

M CONIFERYL DASH ALDEHYDE LBRACKET C RBRACKET
constant: false
initial amount: NaN
initial concentration: NaN
in compartment: 570138
is: CONIFERYL-ALDEHYDE
name: coniferyl aldehyde
type: Species
has only substance units: false
boundary condition: false
is: C02666

578658
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

595164
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

588202
stoichiometry: 1.0
species: M BUTANEDIOL LBRACKET E RBRACKET
type: SpeciesReference

R RXN0 DASH 949
name: lipoate synthase
fast: false
reactant: 610834
is: RXN0-949
product: 610870
notes: GENE_ASSOCIATION: ACIAD1015 or ACIAD2275
reversible: false
product: 610882
reactant: 610846
product: 610858
type: Reaction

601102
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

616546
stoichiometry: 1.0
species: 570835
type: SpeciesReference

581580
stoichiometry: 1.0
species: M ANTHRANILATE LBRACKET C RBRACKET
type: SpeciesReference

604247
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET
type: SpeciesReference

M NA PLUS LBRACKET C RBRACKET
in compartment: 570138
name: na+
type: Species
initial amount: NaN
is: na1
constant: false
has only substance units: false
initial concentration: NaN
boundary condition: false
is: NA+
is: C01330

579813
stoichiometry: 1.0
species: M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET
type: SpeciesReference

R ACETYLGLUTKIN DASH RXN
is: ACGK
reversible: true
type: Reaction
product: 611881
fast: false
name: acetylglutamate kinase
product: 611869
is: ACETYLGLUTKIN-RXN
reactant: 611857
reactant: 611845
notes: GENE_ASSOCIATION: ACIAD0903

587397
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

573819
stoichiometry: 1.0
species: M CPDIM DASH 6097 LBRACKET C RBRACKET
type: SpeciesReference

593427
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

582858
stoichiometry: 1.0
species: M CPD DASH 218 LBRACKET E RBRACKET
type: SpeciesReference

595430
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

M ADENINE LBRACKET C RBRACKET
name: adenine
is: ade
constant: false
boundary condition: false
initial amount: NaN
initial concentration: NaN
is: C00147
in compartment: 570138
is: ADENINE
type: Species
has only substance units: false

M GLYCOLLATE LBRACKET C RBRACKET
is: glyclt
in compartment: 570138
is: C00160
name: glycolate
constant: false
type: Species
initial concentration: NaN
is: GLYCOLLATE
has only substance units: false
initial amount: NaN
boundary condition: false

M UTP LBRACKET C RBRACKET
initial concentration: NaN
has only substance units: false
is: UTP
constant: false
is: utp
type: Species
in compartment: 570138
name: utp
boundary condition: false
initial amount: NaN
is: C00075

608061
stoichiometry: 1.0
species: M PHENOL LBRACKET C RBRACKET
type: SpeciesReference

600295
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

607482
stoichiometry: 0.07
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

572279
stoichiometry: 1.0
species: M C8 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

572074
stoichiometry: 1.0
species: M ACETOACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

606534
stoichiometry: 1.0
species: 570595
type: SpeciesReference

614960
stoichiometry: 1.0
species: M OX DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
type: SpeciesReference

593174
stoichiometry: 1.0
species: M TYR LBRACKET C RBRACKET
type: SpeciesReference

M PROTOPORPHYRINOGEN LBRACKET C RBRACKET
constant: false
is: PROTOPORPHYRINOGEN
in compartment: 570138
is: C01079
type: Species
has only substance units: false
name: protoporphyrinogen
is: pppg9
initial concentration: NaN
boundary condition: false
initial amount: NaN

589175
stoichiometry: 1.0
species: M ACETYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

605728
stoichiometry: 1.0
species: M GLT LBRACKET E RBRACKET
type: SpeciesReference

R 4OH2OXOGLUTARALDOL DASH RXN
product: 593415
product: 593403
reactant: 593391
notes: GENE_ASSOCIATION: ACIAD0543
is: 4OH2OXOGLUTARALDOL-RXN
fast: false
reversible: true
name: 4-hydroxy-2-oxoglutarate aldolase
type: Reaction

582496
stoichiometry: 1.0
species: M DIHYDRO DASH DIOH DASH BENZOATE LBRACKET C RBRACKET
type: SpeciesReference

M 3 DASH P DASH HYDROXYPYRUVATE LBRACKET C RBRACKET
in compartment: 570138
is: 3-P-HYDROXYPYRUVATE
initial concentration: NaN
has only substance units: false
name: 3-phospho-hydroxypyruvate
is: C03232
initial amount: NaN
constant: false
is: 3php
boundary condition: false
type: Species

570342
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: TRIACYLGLYCEROL_W
type: Species

579897
stoichiometry: 1.0
species: M ACETOIN LBRACKET C RBRACKET
type: SpeciesReference

618044
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

602792
stoichiometry: 1.0
species: M 2 DASH OXOBUTANOATE LBRACKET C RBRACKET
type: SpeciesReference

611761
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

582423
stoichiometry: 1.0
species: 570835
type: SpeciesReference

595708
stoichiometry: 1.0
species: M RIBULOSE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

617850
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

574264
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

R ADENOSYLHOMOCYSTEINE DASH NUCLEOSIDASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD0773
name: adenosylhomocysteine nucleosidase
type: Reaction
reversible: true
product: 610112
reactant: 610100
is: AHCYSNS
fast: false
reactant: 610088
is: ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN
product: 610124

598477
stoichiometry: 1.0
species: M 3 DASH CARBOXY DASH 3 DASH HYDROXY DASH ISOCAPROATE LBRACKET C RBRACKET
type: SpeciesReference

610990
stoichiometry: 0.633
species: 571244
type: SpeciesReference

589920
stoichiometry: 1.0
species: M C5 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

595008
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

M ADENOSYL DASH P4 LBRACKET C RBRACKET
has only substance units: false
is: ap4a
type: Species
constant: false
boundary condition: false
initial concentration: NaN
is: ADENOSYL-P4
in compartment: 570138
initial amount: NaN
is: C01260
name: p(1),p(4)-bis(5'-adenosyl)tetraphosphate

608869
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

598731
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

589235
stoichiometry: 1.0
species: M TYR LBRACKET E RBRACKET
type: SpeciesReference

M NIACINE LBRACKET C RBRACKET
constant: false
type: Species
is: nac
name: niacine
initial amount: NaN
in compartment: 570138
initial concentration: NaN
is: C00253
is: NIACINE
boundary condition: false
has only substance units: false

610484
stoichiometry: 1.0
species: 570727
type: SpeciesReference

570667
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-tetradec-4-enoyl-acp
type: Species

R 4 PERIOD 1 PERIOD 2 PERIOD 41 DASH RXN
product: 577888
product: 577876
reactant: 577864
notes: GENE_ASSOCIATION: ACIAD1726
is: 4.1.2.41-RXN
fast: false
reversible: true
name: vanillin synthase
type: Reaction

616755
stoichiometry: 1.0
species: M C5 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M ILE DASH TRNAS LBRACKET C RBRACKET
type: Species
boundary condition: false
name: isoleucine trna
constant: false
is: trnaile
initial amount: NaN
is: C01644
initial concentration: NaN
in compartment: 570138
is: ILE-TRNAS
has only substance units: false

612677
stoichiometry: 1.0
species: M C18 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: SpeciesReference

585990
stoichiometry: 1.0
species: M CPD DASH 1301 LBRACKET C RBRACKET
type: SpeciesReference

603646
stoichiometry: 1.0
species: M TYR LBRACKET C RBRACKET
type: SpeciesReference

574578
stoichiometry: 1.0
species: M L DASH ARGININO DASH SUCCINATE LBRACKET C RBRACKET
type: SpeciesReference

571870
stoichiometry: 1.0
species: M HYPOXANTHINE LBRACKET C RBRACKET
type: SpeciesReference

570414
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: UDP-POLYSACCH_LPS
type: Species

R C18 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
reactant: 612689
type: Reaction
product: 612713
name: hydroxyacyl-coa dehydrogenase (c18:0)
product: 612701
reactant: 612677
is: HACD8i
fast: false
reversible: false
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
is: OHACYL-COA-DEHYDROG-RXN

586350
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

606245
stoichiometry: 1.0
species: M D DASH ALA DASH D DASH ALA LBRACKET C RBRACKET
type: SpeciesReference

599742
stoichiometry: 1.0
species: M CPD DASH 1772 LBRACKET C RBRACKET
type: SpeciesReference

R RIBOPHOSPHAT DASH RXN
fast: false
product: 583804
reactant: 583778
reversible: false
is: PMDPHT
reactant: 583791
type: Reaction
is: RIBOPHOSPHAT-RXN
name: pyrimidine phosphatase
notes: GENE_ASSOCIATION:
product: 583817

584257
stoichiometry: 1.0
species: M 4 DASH AMINO DASH BUTYRATE LBRACKET C RBRACKET
type: SpeciesReference

585557
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M CAFFEOYL DASH COA LBRACKET C RBRACKET
in compartment: 570138
is: C00323
constant: false
initial concentration: NaN
boundary condition: false
name: caffeoyl-coa
initial amount: NaN
has only substance units: false
is: CAFFEOYL-COA
type: Species

597983
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

608918
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

579211
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

572447
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

586626
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

581376
stoichiometry: 1.0
species: M PROPANAMIDE LBRACKET C RBRACKET
type: SpeciesReference

614600
stoichiometry: 1.0
species: M C16 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

581038
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

598140
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

613013
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M CMP DASH KDO LBRACKET C RBRACKET
type: Species
is: ckdo
is: C04121
has only substance units: false
constant: false
is: CMP-KDO
boundary condition: false
initial concentration: NaN
initial amount: NaN
name: cmp-3-deoxy-d-manno-octulosonate
in compartment: 570138

591271
stoichiometry: 1.0
species: M GUANOSINE LBRACKET C RBRACKET
type: SpeciesReference

605595
stoichiometry: 1.0
species: 570859
type: SpeciesReference

609207
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

596526
stoichiometry: 1.0
species: M XANTHOSINE LBRACKET C RBRACKET
type: SpeciesReference

R C16 COLON 0 DASH COATRANSFERASE DASH RXN
product: 572026
reversible: false
name: acyl coa transferase (c16:0)
fast: false
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
reactant: 572002
reactant: 571990
product: 572038
is: FACOAL160t2pp
is: ACYLCOASYN-RXN
reactant: 571978
type: Reaction
product: 572014

602840
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

MODEL1949107276
species: M DI DASH H DASH OROTATE LBRACKET C RBRACKET
species: 570763
species: M CPD DASH 218 LBRACKET E RBRACKET
reaction: R TRANS DASH RXN DASH L DASH ASPARTATE
reaction: R THIAZOLSYN3 DASH RXN
species: M CARNITINE LBRACKET E RBRACKET
reaction: 587937
species: M PROTOPORPHYRINOGEN LBRACKET C RBRACKET
species: M C18 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
species: M TREHALOSE DASH 6P LBRACKET C RBRACKET
species: M MALONATE LBRACKET E RBRACKET
reaction: R C16 COLON 1 LPAREN C7 RPAREN DASH 2ENOYLACP DASH REDUCTASE DASH RXN
reaction: 614392
reaction: R TRANS DASH RXN DASH PRO
species: M IMINOASPARTATE LBRACKET C RBRACKET
reaction: R 3 DASH ISOPROPYLMALDEHYDROG DASH RXN
reaction: R GUANYL DASH KIN DASH RXN
species: M CPD DASH 302 LBRACKET C RBRACKET
reaction: R 1 PERIOD 14 PERIOD 12 PERIOD 1 DASH RXN
species: M PANTETHEINE DASH P LBRACKET C RBRACKET
reaction: R DIHYDROPICRED DASH RXN
reaction: R GLUTSEMIALDEHYDROG DASH RXN
reaction: R UDPNACETYLGLUCOSAMACYLTRANS DASH RXN
reaction: R AICARSYN DASH RXN
reaction: R TYRAMINOTRANS DASH RXN
reaction: R 1 PERIOD 3 PERIOD 1 PERIOD 62 DASH RXN
reaction: R TRANS DASH RXN DASH C6 COLON 2 LPAREN c2 COMMA c4 RPAREN
species: M CPDIM DASH 6118 LBRACKET C RBRACKET
reaction: R H2PTERIDINEPYROPHOSPHOKIN DASH RXN
reaction: R AMPSYN DASH RXN
reaction: R 1 PERIOD 5 PERIOD 1 PERIOD 29 DASH RXN
reaction: 601378
reaction: R TRANS DASH RXN DASH NMN
reaction: 591801
reaction: R PHEAMINOTRANS DASH RXN
reaction: R DIHYDROFOLATEREDUCT DASH RXN
reaction: R AICARTRANSFORM DASH RXN
reaction: R SALICYLATE DASH 1 DASH MONOOXYGENASE DASH RXN
reaction: R C14 COLON 1 LPAREN C5 RPAREN DASH 3OXOACP DASH SYNTHASE DASH RXN
reaction: R BRANCHED DASH CHAINAMINOTRANSFERILEU DASH RXN
reaction: 582158
reaction: 586554
species: M L DASH ORNITHINE LBRACKET E RBRACKET
species: M P DASH HYDROXY DASH PHENYLPYRUVATE LBRACKET C RBRACKET
reaction: R RXN0 DASH 383
reaction: 602142
species: M L DASH ARGININO DASH SUCCINATE LBRACKET C RBRACKET
reaction: R DIHYDROFOLATESYNTH DASH RXN
species: M ALLANTOATE LBRACKET C RBRACKET
reaction: R ADENYL DASH KIN DASH RXN
reaction: 577780
reaction: 614730
species: 570547
species: M L DASH ORNITHINE LBRACKET C RBRACKET
reaction: R CHORISMATE DASH SYNTHASE DASH RXN
species: M UROPORPHYRINOGEN DASH III LBRACKET C RBRACKET
species: 570318
species: M CPD DASH 6501 LBRACKET C RBRACKET
reaction: 580394
species: M 5 DASH P DASH RIBOSYL DASH N DASH FORMYLGLYCINEAMIDE LBRACKET C RBRACKET
reaction: R DXS DASH RXN
species: M OH DASH PYR LBRACKET C RBRACKET
reaction: R GLYRIBONUCSYN DASH RXN
species: M CHARGED DASH MET DASH TRNAS LBRACKET C RBRACKET
species: M INOSINE LBRACKET C RBRACKET
reaction: 597738
reaction: R C10 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
species: M C10 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
species: M C12 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
reaction: R PYRIMSYN3 DASH RXN
species: 570787
species: M CDPDIACYLGLYCEROL LBRACKET C RBRACKET
species: M CHARGED DASH LYS DASH TRNAS LBRACKET C RBRACKET
reaction: R PRAISOM DASH RXN
species: M 3 DASH ENOLPYRUVYL DASH SHIKIMATE DASH 5P LBRACKET C RBRACKET
species: M C6 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
species: M 2K DASH 4CH3 DASH PENTANOATE LBRACKET C RBRACKET
reaction: R ORNDECARBOX DASH RXN
species: 570811
species: M GLUCONATE LBRACKET P RBRACKET

588346
stoichiometry: 1.0
species: 570956
type: SpeciesReference

576876
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

615368
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET
type: SpeciesReference

577972
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

612448
stoichiometry: 1.0
species: 570823
type: SpeciesReference

578224
stoichiometry: 1.0
species: 571040
type: SpeciesReference

M PYRUVATE LBRACKET E RBRACKET
boundary condition: false
is: pyr
name: pyruvate
has only substance units: false
is: C00022
type: Species
constant: false
initial amount: NaN
in compartment: 570126
is: PYRUVATE
initial concentration: NaN

612784
stoichiometry: 1.0
species: 570306
type: SpeciesReference

596815
stoichiometry: 1.0
species: M IMINOASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

578188
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

579079
stoichiometry: 1.0
species: M CONIFERYL DASH ALDEHYDE LBRACKET E RBRACKET
type: SpeciesReference

608277
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

612701
stoichiometry: 1.0
species: M C18 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: SpeciesReference

595684
stoichiometry: 1.0
species: M CPD DASH 110 LBRACKET E RBRACKET
type: SpeciesReference

613158
stoichiometry: 0.052
species: 570775
type: SpeciesReference

573567
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

M UDP DASH ACETYL DASH CARBOXYVINYL DASH GLUCOSAMINE LBRACKET C RBRACKET
initial amount: NaN
initial concentration: NaN
type: Species
is: uaccg
is: C04631
has only substance units: false
constant: false
is: UDP-ACETYL-CARBOXYVINYL-GLUCOSAMINE
boundary condition: false
in compartment: 570138
name: udp-n-acetyl-3-(1-carboxyvinyl)-d-glucosamine

577382
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET
type: SpeciesReference

588094
stoichiometry: 1.0
species: M CPD DASH 654 LBRACKET C RBRACKET
type: SpeciesReference

R RNA DASH SYNTH DASH RXN
is: DNA-DIRECTED-RNA-POLYMERASE-RXN
name: rna synthesis reaction
reversible: false
product: 583701
reactant: 583640
type: Reaction
product: 583688
notes: GENE_ASSOCIATION:
fast: false
reactant: 583628
reactant: 583616
reactant: 583652
product: 583664
product: 583676

584653
stoichiometry: 1.0
species: 571004
type: SpeciesReference

600067
stoichiometry: 1.0
species: M NIACINAMIDE LBRACKET C RBRACKET
type: SpeciesReference

583123
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

594056
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

613085
stoichiometry: 0.6
species: M C18 COLON 1 LPAREN C9 RPAREN DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

R CHD DASH RXN
is: CHOLD
notes: GENE_ASSOCIATION: ACIAD1008
reactant: 613278
fast: false
reactant: 613290
product: 613302
product: 613314
type: Reaction
name: choline dehydrogenase
reversible: true
is: CHD-RXN

R RXNIM DASH 3902
product: 582230
name: gluconate permease
reversible: false
notes: GENE_ASSOCIATION: ACIAD0544
is: GLCNt2rpp
fast: false
is: RXNIM-3902
reactant: 582206
product: 582242
reactant: 582218
type: Reaction

R 2 COMMA 5 DASH DIOXOVALERATE DASH DEHYDROGENASE DASH RXN
reactant: 588082
name: 2,5-dioxovalerate dehydrogenase
product: 588130
reactant: 588106
fast: false
notes: GENE_ASSOCIATION: ACIAD0131
is: |2,5-DIOXOVALERATE-DEHYDROGENASE-RXN|
product: 588118
type: Reaction
reactant: 588094
reversible: true

602057
stoichiometry: 1.0
species: M DEOXYGUANOSINE LBRACKET C RBRACKET
type: SpeciesReference

617538
stoichiometry: 1.0
species: M CHOLINE LBRACKET E RBRACKET
type: SpeciesReference

R SUCCARGDIHYDRO DASH RXN
type: Reaction
reactant: 586074
is: SADH
name: succinylarginine dihydrolase
product: 586086
fast: false
product: 586098
notes: GENE_ASSOCIATION: ACIAD1288
reactant: 586062
product: 586110
is: SUCCARGDIHYDRO-RXN
reversible: false

584737
stoichiometry: 1.0
species: M UDP LBRACKET C RBRACKET
type: SpeciesReference

594888
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

578441
stoichiometry: 1.0
species: M URIDINE LBRACKET C RBRACKET
type: SpeciesReference

M CPDIM DASH 6114 LBRACKET E RBRACKET
is: CPDIM-6114
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: salicylacetate
type: Species

587877
stoichiometry: 1.0
species: M CPD DASH 6501 LBRACKET E RBRACKET
type: SpeciesReference

613943
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

R TYROSINE DASH DASH TRNA DASH LIGASE DASH RXN
product: 603706
notes: GENE_ASSOCIATION: ACIAD0013
reactant: 603658
product: 603694
fast: false
is: TYROSINE--TRNA-LIGASE-RXN
product: 603682
name: tyrosine--trna ligase
is: TYRTRS
reactant: 603646
type: Reaction
reversible: false
reactant: 603670

573025
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

575298
stoichiometry: 1.0
species: M 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 245 LBRACKET C RBRACKET
is: C01163
initial concentration: NaN
has only substance units: false
constant: false
type: Species
boundary condition: false
initial amount: NaN
is: CPD-245
in compartment: 570138
name: 3-carboxy-cis,cis-muconate

603573
stoichiometry: 1.0
species: M SER LBRACKET C RBRACKET
type: SpeciesReference

M UDP DASH OHMYR DASH GLUCOSAMINE LBRACKET C RBRACKET
name: udp-3-o-(3-hydroxymyristoyl)glucosamine
is: C06022
has only substance units: false
initial concentration: NaN
type: Species
constant: false
in compartment: 570138
initial amount: NaN
boundary condition: false
is: UDP-OHMYR-GLUCOSAMINE
is: u3hga

595370
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

574481
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

577635
stoichiometry: 1.0
species: M CHORISMATE LBRACKET C RBRACKET
type: SpeciesReference

M PANTETHEINE DASH P LBRACKET C RBRACKET
is: C01134
has only substance units: false
constant: false
type: Species
initial concentration: NaN
initial amount: NaN
is: PANTETHEINE-P
is: pan4p
boundary condition: false
name: pantetheine 4'-phosphate
in compartment: 570138

604464
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

610052
stoichiometry: 1.0
species: M ETOH LBRACKET E RBRACKET
type: SpeciesReference

576502
stoichiometry: 0.18
species: M C16 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

605511
stoichiometry: 1.0
species: M L DASH 1 DASH PHOSPHATIDYL DASH SERINE LBRACKET C RBRACKET
type: SpeciesReference

571184
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: cis-hexadec-7-enoate
type: Species

611436
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

591175
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

590933
stoichiometry: 1.0
species: M RIBOFLAVIN LBRACKET C RBRACKET
type: SpeciesReference

608169
stoichiometry: 1.0
species: M NA PLUS LBRACKET E RBRACKET
type: SpeciesReference

572603
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH ATP LBRACKET C RBRACKET
type: SpeciesReference

599298
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET
type: SpeciesReference

605138
stoichiometry: 1.0
species: M AMINO DASH RIBOSYLAMINO DASH 1H DASH 3H DASH PYR DASH DIONE LBRACKET C RBRACKET
type: SpeciesReference

600680
stoichiometry: 1.0
species: M TDP LBRACKET C RBRACKET
type: SpeciesReference

M DTDP DASH D DASH GLUCOSE LBRACKET C RBRACKET
initial amount: NaN
name: dtdp-d-glucose
in compartment: 570138
type: Species
constant: false
initial concentration: NaN
is: C00842
has only substance units: false
is: dtdpglu
is: DTDP-D-GLUCOSE
boundary condition: false

609968
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

598573
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

610762
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R RXNIM DASH 3991
product: 576647
product: 576635
reactant: 576623
notes: GENE_ASSOCIATION: ACIAD1757 and ACIAD1756 and ACIAD1755 and ACIAD1753 and ACIAD1754 and ACIAD1758 and ACIAD1759
is: RXNIM-3991
fast: false
reversible: false
name: malonate decarboxylase
type: Reaction

606317
stoichiometry: 1.0
species: M NITRITE LBRACKET C RBRACKET
type: SpeciesReference

574530
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

578874
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 3571 LBRACKET E RBRACKET
is: CPD-3571
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: tricarballylate
type: Species

599418
stoichiometry: 1.0
species: M DIHYDRO DASH DIOH DASH BENZOATE LBRACKET C RBRACKET
type: SpeciesReference

572170
stoichiometry: 1.0
species: M OCTAPRENYL DASH METHYL DASH OH DASH METHOXY DASH BENZQ LBRACKET C RBRACKET
type: SpeciesReference

611918
stoichiometry: 2.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

M UDP LBRACKET C RBRACKET
name: udp
constant: false
initial concentration: NaN
boundary condition: false
is: C00015
in compartment: 570138
is: UDP
initial amount: NaN
has only substance units: false
type: Species
is: udp

598055
stoichiometry: 1.0
species: M ERYTHROSE DASH 4P LBRACKET C RBRACKET
type: SpeciesReference

572339
stoichiometry: 1.0
species: M HYPOXANTHINE LBRACKET C RBRACKET
type: SpeciesReference

605415
stoichiometry: 1.0
species: M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET
type: SpeciesReference

587324
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

612062
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

589812
stoichiometry: 1.0
species: M PHOSPHORIBULOSYL DASH FORMIMINO DASH AICAR DASH P LBRACKET C RBRACKET
type: SpeciesReference

596273
stoichiometry: 1.0
species: M UDP LBRACKET C RBRACKET
type: SpeciesReference

610618
stoichiometry: 5.0
species: M DELTA LPAREN 3 RPAREN DASH ISOPENTENYL DASH PP LBRACKET C RBRACKET
type: SpeciesReference

R ISOCHORSYN DASH RXN
product: 587000
reactant: 586988
notes: GENE_ASSOCIATION: ACIAD2776
is: ISOCHORSYN-RXN
is: ICHORS
fast: false
reversible: false
name: isochorismate mutase
type: Reaction

618393
stoichiometry: 1.0
species: M 5 DASH KETO DASH 4 DASH DEOXY DASH D DASH GLUCARATE LBRACKET C RBRACKET
type: SpeciesReference

582110
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET E RBRACKET
type: SpeciesReference

M DIACETYL LBRACKET C RBRACKET
initial concentration: NaN
initial amount: NaN
is: C00741
boundary condition: false
type: Species
constant: false
in compartment: 570138
has only substance units: false
name: diacetyl
is: DIACETYL

582750
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

592270
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

616101
stoichiometry: 1.0
species: M FERULOATE LBRACKET C RBRACKET
type: SpeciesReference

R ATP DASH DRAIN DASH RXN
product: 572146
is: ATPM
reactant: 572110
notes: GENE_ASSOCIATION:
product: 572134
fast: false
reactant: 572098
type: Reaction
name: atp maintenance requirement
reversible: false
product: 572122

594224
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

592982
stoichiometry: 1.0
species: 570739
type: SpeciesReference

616041
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

602683
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

615020
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

M D DASH SERINE LBRACKET C RBRACKET
in compartment: 570138
name: d-serine
is: D-SERINE
constant: false
has only substance units: false
type: Species
boundary condition: false
is: C00740
initial concentration: NaN
initial amount: NaN
is: ser-D

583882
reactant: 583895
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-carnitine
type: Reaction

602106
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

609896
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

M GUANOSINE LBRACKET E RBRACKET
is: GUANOSINE
initial concentration: NaN
boundary condition: false
has only substance units: false
in compartment: 570126
is: gsn
is: C00387
name: guanosine
initial amount: NaN
constant: false
type: Species

R UDP DASH NACMURALGLDAPLIG DASH RXN
product: 572471
notes: GENE_ASSOCIATION: ACIAD3365
is: UAAGDS
reactant: 572447
product: 572483
is: UDP-NACMURALGLDAPLIG-RXN
name: udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
type: Reaction
reactant: 572423
reversible: false
product: 572459
fast: false
reactant: 572435

581749
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: SpeciesReference

M PROTON LBRACKET C RBRACKET
is: C00080
constant: false
type: Species
is: http://bigg.ucsd.edu/#h
in compartment: 570138
boundary condition: false
initial concentration: NaN
name: h+
has only substance units: false
is: PROTON
initial amount: NaN

599514
stoichiometry: 1.0
species: 570907
type: SpeciesReference

597224
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

610400
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET
type: SpeciesReference

R SAICARSYN DASH RXN
name: phosphoribosylaminoimidazole-succinocarboxamide synthase
fast: false
notes: GENE_ASSOCIATION: ACIAD3587
is: PRASCS
reactant: 588839
product: 588875
type: Reaction
reversible: false
product: 588887
reactant: 588863
is: SAICARSYN-RXN
product: 588899
reactant: 588851

M CONIFERYL DASH ALDEHYDE LBRACKET E RBRACKET
type: Species
initial concentration: NaN
in compartment: 570126
is: CONIFERYL-ALDEHYDE
initial amount: NaN
constant: false
has only substance units: false
boundary condition: false
is: C02666
name: coniferyl aldehyde

610280
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

601924
stoichiometry: 1.0
species: M 4 DASH P DASH PANTOTHENATE LBRACKET C RBRACKET
type: SpeciesReference

583804
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

595817
stoichiometry: 1.0
species: M BENZOATE LBRACKET E RBRACKET
type: SpeciesReference

604355
stoichiometry: 1.0
species: M UMP LBRACKET C RBRACKET
type: SpeciesReference

576659
stoichiometry: 1.0
species: M CPDIM DASH 6115 LBRACKET C RBRACKET
type: SpeciesReference

597610
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

578766
stoichiometry: 1.0
species: M OH DASH MYRISTOYL LBRACKET C RBRACKET
type: SpeciesReference

589379
stoichiometry: 1.0
species: M UMP LBRACKET C RBRACKET
type: SpeciesReference

M 3 DASH OXOPIMELOYL DASH COA LBRACKET C RBRACKET
constant: false
boundary condition: false
initial concentration: NaN
is: 3-OXOPIMELOYL-COA
has only substance units: false
in compartment: 570138
name: 3-oxopimeloyl-coa
type: Species
is: C06715
initial amount: NaN

578982
stoichiometry: 1.0
species: M 2 DASH OCTAPRENYLPHENOL LBRACKET C RBRACKET
type: SpeciesReference

M OXIDIZED DASH GLUTATHIONE LBRACKET C RBRACKET
boundary condition: false
constant: false
is: OXIDIZED-GLUTATHIONE
name: oxidized glutathione
is: C00127
is: gthox
type: Species
in compartment: 570138
initial concentration: NaN
initial amount: NaN
has only substance units: false

609812
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET
type: SpeciesReference

614015
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: SpeciesReference

597586
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

606498
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

598683
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

R RXNIM DASH 3877
product: 580114
reactant: 580102
notes: GENE_ASSOCIATION: ACIAD2984 or ACIAD1715
is: RXNIM-3877
is: GLCtex
fast: false
reversible: true
name: transport of beta-d-glucose [extraorganism;periplasm](passive)
type: Reaction

R TETHYDPICSUCC DASH RXN
reactant: 581954
product: 581990
fast: false
product: 582002
is: TETHYDPICSUCC-RXN
is: THDPS
reactant: 581978
name: 2,3,4,5-tetrahydropyridine-2-carboxylate n-succinyltransferase
notes: GENE_ASSOCIATION: ACIAD2599
type: Reaction
reactant: 581966
reversible: true

M GUANOSINE LBRACKET C RBRACKET
is: GUANOSINE
is: C00387
initial concentration: NaN
constant: false
boundary condition: false
in compartment: 570138
has only substance units: false
name: guanosine
is: gsn
type: Species
initial amount: NaN

602334
stoichiometry: 1.0
species: M SO3 LBRACKET C RBRACKET
type: SpeciesReference

613798
stoichiometry: 1.0
species: M VAL DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

M DUDP LBRACKET C RBRACKET
in compartment: 570138
type: Species
boundary condition: false
has only substance units: false
name: dudp
is: C01346
is: DUDP
constant: false
initial amount: NaN
is: dudp
initial concentration: NaN

591067
reactant: 591091
reactant: 591103
fast: false
reversible: true
reactant: 591079
notes: GENE_ASSOCIATION:
name: generic free fatty acid assembly
reactant: 591115
type: Reaction
product: 591127

R 2 DASH METHYLCITRATE DASH DEHYDRATASE DASH RXN
reversible: true
is: MCITD
product: 612026
name: 2-methylcitrate dehydratase
is: 2-METHYLCITRATE-DEHYDRATASE-RXN
product: 612014
notes: GENE_ASSOCIATION: ACIAD2755
type: Reaction
fast: false
reactant: 612002

575359
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

597764
stoichiometry: 1.0
species: M CAFFEATE LBRACKET P RBRACKET
type: SpeciesReference

615248
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

M NAD LBRACKET C RBRACKET
constant: false
name: nad
in compartment: 570138
has only substance units: false
initial concentration: NaN
is: NAD
is: nad
boundary condition: false
is: C00003
initial amount: NaN
type: Species

599141
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

R 1 PERIOD 3 PERIOD 1 PERIOD 62 DASH RXN
reactant: 579428
notes: GENE_ASSOCIATION: ACIAD1693
reversible: false
product: 579464
is: 1.3.1.62-RXN
product: 579452
name: pimeloyl-coa dehydrogenase
fast: false
reactant: 579440
type: Reaction

583099
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

575142
stoichiometry: 1.0
species: M 2C DASH METH DASH D DASH ERYTHRITOL DASH CYCLODIPHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

R RXNIM DASH 3878
name: acetoin dehydrogenase
product: 579921
product: 579945
reactant: 579909
reactant: 579897
is: RXNIM-3878
fast: false
product: 579957
reactant: 579885
reversible: false
notes: GENE_ASSOCIATION: ( ACIAD1017 and ACIAD1018 ) and ACIAD1019 and ( ACIAD1020 or ACIAD2874 )
type: Reaction
product: 579933

R PHOSPHOGLUCMUT DASH RXN
product: 600500
reactant: 600488
notes: GENE_ASSOCIATION: ACIAD0104
is: PHOSPHOGLUCMUT-RXN
is: PGMT
fast: false
reversible: true
name: phosphoglucomutase
type: Reaction

607904
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

609291
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

587721
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

M N2 DASH SUCCINYLORNITHINE LBRACKET C RBRACKET
constant: false
is: C03415
type: Species
is: N2-SUCCINYLORNITHINE
has only substance units: false
initial concentration: NaN
is: sucorn
in compartment: 570138
initial amount: NaN
boundary condition: false
name: n2-succinylornithine

M C16 COLON 0 DASH COA LBRACKET C RBRACKET
boundary condition: false
initial amount: NaN
in compartment: 570138
constant: false
has only substance units: false
name: hexadecanoyl-coa
is: C00154
initial concentration: NaN
is: PALMITYL-COA
is: pmtcoa
type: Species

613835
stoichiometry: 1.0
species: M CHARGED DASH VAL DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

586410
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

596309
stoichiometry: 4.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

R DXS DASH RXN
reactant: 592078
name: 1-deoxy-d-xylulose 5-phosphate synthase
reactant: 592090
fast: false
reversible: false
is: DXPS
is: DXS-RXN
product: 592114
type: Reaction
product: 592102
notes: GENE_ASSOCIATION: ACIAD3247

611545
stoichiometry: 1.0
species: M CPDIM DASH 6118 LBRACKET C RBRACKET
type: SpeciesReference

617646
stoichiometry: 1.0
species: 570919
type: SpeciesReference

603212
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

571726
stoichiometry: 1.0
species: 570980
type: SpeciesReference

602575
stoichiometry: 1.0
species: 570402
type: SpeciesReference

611869
stoichiometry: 1.0
species: M N DASH ACETYL DASH GLUTAMYL DASH P LBRACKET C RBRACKET
type: SpeciesReference

599622
reactant: 599634
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of deoxyadenosine
type: Reaction

585905
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: SpeciesReference

590368
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

618284
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

598899
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

600548
stoichiometry: 1.0
species: 570463
type: SpeciesReference

601816
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

596683
stoichiometry: 1.0
species: M HCO3 LBRACKET C RBRACKET
type: SpeciesReference

587433
product: 587457
reactant: 587445
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of ethanol [extraorganism;cytosol](passive)
type: Reaction

M TREHALOSE DASH 6P LBRACKET C RBRACKET
is: C00689
type: Species
is: TREHALOSE-6P
boundary condition: false
constant: false
is: tre6p
in compartment: 570138
name: alpha,alpha-trehalose 6-phosphate
initial concentration: NaN
initial amount: NaN
has only substance units: false

M CYTOSINE LBRACKET C RBRACKET
is: CYTOSINE
initial concentration: NaN
is: C00380
initial amount: NaN
is: csn
constant: false
type: Species
in compartment: 570138
has only substance units: false
boundary condition: false
name: cytosine

572819
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: SpeciesReference

R METHENYLTHFCYCLOHYDRO DASH RXN
reactant: 584025
name: methenyltetrahydrofolate cyclohydrolase
product: 584038
is: METHENYLTHFCYCLOHYDRO-RXN
reactant: 584012
reversible: true
notes: GENE_ASSOCIATION: ACIAD2553 or ACIAD2847
type: Reaction
fast: false
is: MTHFC

587541
stoichiometry: 1.0
species: 571076
type: SpeciesReference

605306
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

594430
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

591331
stoichiometry: 1.0
species: M TRP LBRACKET E RBRACKET
type: SpeciesReference

R DHHB DASH METHYLTRANSFER DASH RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD0044
is: DMQMT
reactant: 572158
name: 3-demethylubiquinone-9 3-o-methyltransferase
reactant: 572170
product: 572194
product: 572182
type: Reaction
is: DHHB-METHYLTRANSFER-RXN
reversible: false

615092
stoichiometry: 1.0
species: 570775
type: SpeciesReference

R HOMOCYSMETB12 DASH RXN
reactant: 601549
name: 5-methyltetrahydrofolate--homocysteine s-methyltransferase
notes: GENE_ASSOCIATION: ACIAD1045
type: Reaction
reversible: false
is: HOMOCYSMETB12-RXN
reactant: 601537
product: 601574
fast: false
is: METS
product: 601562

571076
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-oxopentanoyl-coa
type: Species

582642
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R GPH DASH RXN
reversible: false
fast: false
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0043 or ACIAD0296 or ACIAD0443
is: PGLYCP
is: GPH-RXN
reactant: 603308
product: 603320
product: 603332
name: phosphoglycolate phosphatase
reactant: 603296

604958
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

604884
reactant: 604896
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of guanosine
type: Reaction

M CHARGED DASH LEU DASH TRNAS LBRACKET C RBRACKET
has only substance units: false
type: Species
name: charged leucine trna
initial concentration: NaN
initial amount: NaN
in compartment: 570138
is: leutrna
is: C02047
is: CHARGED-LEU-TRNAS
boundary condition: false
constant: false

597115
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

610557
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 104 LBRACKET P RBRACKET
has only substance units: false
is: C01359
boundary condition: false
name: pqqh2
initial amount: NaN
in compartment: 570114
is: CPD-104
type: Species
constant: false
initial concentration: NaN

616258
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

M L DASH ASPARTATE DASH SEMIALDEHYDE LBRACKET C RBRACKET
initial concentration: NaN
boundary condition: false
type: Species
name: l-aspartate-semialdehyde
is: L-ASPARTATE-SEMIALDEHYDE
in compartment: 570138
has only substance units: false
constant: false
initial amount: NaN
is: C00441
is: aspsa

R 1 DASH ACYLGLYCEROL DASH 3 DASH P DASH ACYLTRANSFER DASH PL DASH RXN
product: 601198
reactant: 601186
is: 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN
notes: GENE_ASSOCIATION: ACIAD3232
type: Reaction
name: glycerol-3-phosphate acyltransferase
reactant: 601174
product: 601210
reversible: false
fast: false

581858
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

R L DASH LACTDEHYDROGFMN DASH RXN
product: 597610
product: 597598
is: L-LACTDEHYDROGFMN-RXN
reactant: 597574
fast: false
notes: GENE_ASSOCIATION: ACIAD0108
is: L-LACD2
reactant: 597586
type: Reaction
name: lactate oxidation
reversible: false

572759
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

R C18 COLON 1 LPAREN C9 RPAREN DASH 3OXOACP DASH REDUCTASE DASH RXN
reactant: 604644
reversible: false
notes: GENE_ASSOCIATION: ACIAD0871
type: Reaction
is: 3-OXOACYL-ACP-REDUCT-RXN
reactant: 604632
product: 604656
product: 604668
name: 3oxoacyl-acp reductase (c18:1(c9))
fast: false

598621
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

M DIAMINO DASH OH DASH PHOSPHORIBOSYLAMINO DASH PYR LBRACKET C RBRACKET
type: Species
has only substance units: false
boundary condition: false
constant: false
in compartment: 570138
initial concentration: NaN
initial amount: NaN
name: 2,5-diamino-6-(ribosylamino)-4-(3h)-pyrimidinone 5'-phosphate
is: DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR
is: 25drapp

592620
stoichiometry: 1.67
species: M UDP DASH GLUCOSE LBRACKET C RBRACKET
type: SpeciesReference

613712
stoichiometry: 1.0
species: M NA PLUS LBRACKET E RBRACKET
type: SpeciesReference

R C8 COLON 0 DASH CARBOXYCOA DASH DEHYDROGENASE DASH RXN
reactant: 617344
notes: GENE_ASSOCIATION: ACIAD1693
reversible: false
fast: false
reactant: 617332
type: Reaction
name: dicarboxylate acyl-coa dehydrogenase (c8:0)
product: 617368
is: RXNIM-6199
product: 617356

R 2 PERIOD 4 PERIOD 2 PERIOD 12 DASH RXN
type: Reaction
fast: false
product: 602587
reversible: true
product: 602599
is: 2.4.2.12-RXN
name: nicotinamide phosphoribosyltransferase
reactant: 602575
notes: GENE_ASSOCIATION: ACIAD0963
reactant: 602563

599201
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

611278
stoichiometry: 1.0
species: M THR DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

605969
reactant: 605981
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of malate
type: Reaction

594333
stoichiometry: 1.0
species: M DUMP LBRACKET C RBRACKET
type: SpeciesReference

592560
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

579789
stoichiometry: 1.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET
type: SpeciesReference

584509
stoichiometry: 0.8
species: 570931
type: SpeciesReference

M FRUCTOSE DASH 16 DASH DIPHOSPHATE LBRACKET C RBRACKET
in compartment: 570138
constant: false
initial amount: NaN
has only substance units: false
is: FRUCTOSE-16-DIPHOSPHATE
initial concentration: NaN
boundary condition: false
is: fdp
name: fructose-1,6-bisphosphate
is: C00354
type: Species

616198
stoichiometry: 1.0
species: M METHYLENE DASH THF LBRACKET C RBRACKET
type: SpeciesReference

613375
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

580810
stoichiometry: 1.0
species: M 2 DASH KETO DASH 3 DASH DEOXY DASH 6 DASH P DASH GLUCONATE LBRACKET C RBRACKET
type: SpeciesReference

578032
stoichiometry: 1.0
species: M CDP LBRACKET C RBRACKET
type: SpeciesReference

M C16 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
is: 3-OXOPALMITOYL-COA
is: 3ohdcoa
type: Species
name: 3-oxohexadecanoyl-coa
initial concentration: NaN
constant: false
initial amount: NaN
is: C05259
has only substance units: false
boundary condition: false
in compartment: 570138

M BUTANEDIOL LBRACKET E RBRACKET
is: BUTANEDIOL
initial concentration: NaN
has only substance units: false
type: Species
is: C03044
initial amount: NaN
constant: false
name: 2,3-butanediol
boundary condition: false
in compartment: 570126

595925
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

599850
stoichiometry: 1.0
species: M GLT LBRACKET E RBRACKET
type: SpeciesReference

607616
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

598368
stoichiometry: 1.0
species: 570210
type: SpeciesReference

584149
stoichiometry: 1.0
species: 570883
type: SpeciesReference

582050
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

601706
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

605837
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

574686
stoichiometry: 1.0
species: M TRIACYLGLYCEROL LBRACKET C RBRACKET
type: SpeciesReference

599069
stoichiometry: 1.0
species: M HISTIDINAL LBRACKET C RBRACKET
type: SpeciesReference

571582
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

570126
constant: true
size: NaN
spatial dimensions: 3.0
name: extracellular space
type: Compartment

572675
stoichiometry: 1.0
species: 570294
type: SpeciesReference

603862
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

580529
stoichiometry: 0.473
species: 570318
type: SpeciesReference

R ACETATEKIN DASH RXN
reactant: 600632
product: 600644
type: Reaction
reactant: 600620
reversible: true
notes: GENE_ASSOCIATION: ACIAD0541
is: ACETATEKIN-RXN
is: ACKr
product: 600656
fast: false
name: acetate kinase

570775
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-hexadec-7-enoate
type: Species

593704
stoichiometry: 1.0
species: M 3OH DASH 4P DASH OH DASH ALPHA DASH KETOBUTYRATE LBRACKET C RBRACKET
type: SpeciesReference

589704
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

585448
stoichiometry: 1.0
species: 570402
type: SpeciesReference

579561
stoichiometry: 1.0
species: M XANTHINE LBRACKET E RBRACKET
type: SpeciesReference

R DSERDEAM DASH RXN
name: d-serine dehydratase
product: 601234
is: DSERDEAM-RXN
reactant: 601222
reversible: false
notes: GENE_ASSOCIATION: ACIAD1048
is: SERD D
fast: false
type: Reaction
product: 601246

588550
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

588454
product: 588478
reactant: 588466
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of chlorogenate [extraorganism;periplasm](passive)
type: Reaction

607628
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

R THYMIDYLATE DASH 5 APOST DASH PHOSPHATASE DASH RXN
reactant: 580638
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227
reactant: 580626
reversible: false
product: 580662
type: Reaction
name: dtmp nucleotidase
fast: false
is: |THYMIDYLATE-5'-PHOSPHATASE-RXN|
product: 580650
is: NTD5

611653
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

R C14 COLON 0 DASH 3OXOACP DASH SYNTHASE DASH RXN
fast: false
product: 610184
reactant: 610148
name: 3oxoacyl-acp synthase (c14:0)
is: 3OAS140
product: 610160
product: 610172
reactant: 610136
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
reversible: false
type: Reaction
is: 3-OXOACYL-ACP-SYNTH-RXN

580690
stoichiometry: 1.0
species: M SO3 LBRACKET E RBRACKET
type: SpeciesReference

582533
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

M ACETYL DASH P LBRACKET C RBRACKET
name: acetylphosphate
is: ACETYL-P
in compartment: 570138
constant: false
initial amount: NaN
is: C00227
initial concentration: NaN
is: actp
boundary condition: false
type: Species
has only substance units: false

580750
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R FPPSYN DASH RXN
reactant: 589836
reversible: true
type: Reaction
reactant: 589824
name: geranyltranstransferase
notes: GENE_ASSOCIATION: ACIAD2968 or ACIAD2940 or ACIAD1374
product: 589848
is: FPPSYN-RXN
fast: false
is: GRTT
product: 589860

585881
stoichiometry: 1.0
species: M C10 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: SpeciesReference

608434
stoichiometry: 0.02
species: M CHARGED DASH TYR DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

571510
stoichiometry: 1.0
species: M 5 DASH P DASH RIBOSYL DASH N DASH FORMYLGLYCINEAMIDE LBRACKET C RBRACKET
type: SpeciesReference

613434
stoichiometry: 1.0
species: M C10 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

597019
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

R SERINE DASH O DASH ACETTRAN DASH RXN
reversible: true
type: Reaction
reactant: 613616
is: SERAT
fast: false
name: serine o-acetyltransferase
notes: GENE_ASSOCIATION: ACIAD2091 or ACIAD1584 or ACIAD1763
is: SERINE-O-ACETTRAN-RXN
product: 613652
product: 613640
reactant: 613628

608507
stoichiometry: 0.2
species: M CHARGED DASH GLY DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

579187
stoichiometry: 1.0
species: M OCTANOL LBRACKET C RBRACKET
type: SpeciesReference

585205
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

M C14 COLON 0 DASH COA LBRACKET C RBRACKET
name: tetradecanoyl-coa
initial concentration: NaN
initial amount: NaN
has only substance units: false
type: Species
boundary condition: false
is: tdcoa
constant: false
is: C02593
in compartment: 570138
is: TETRADECANOYL-COA

616983
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET
type: SpeciesReference

614691
stoichiometry: 1.0
species: M D DASH GALACTARATE LBRACKET E RBRACKET
type: SpeciesReference

600608
stoichiometry: 1.0
species: 570282
type: SpeciesReference

584437
stoichiometry: 1.0
species: M N DASH SUCCINYLLL DASH 2 COMMA 6 DASH DIAMINOPIMELATE LBRACKET C RBRACKET
type: SpeciesReference

603296
stoichiometry: 1.0
species: M CPD DASH 67 LBRACKET C RBRACKET
type: SpeciesReference

R URACIL DASH PRIBOSYLTRANS DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0744
reactant: 578910
fast: false
is: URACIL-PRIBOSYLTRANS-RXN
product: 578946
is: UPPRT
name: uracil phosphoribosyltransferase
reversible: false
reactant: 578922
product: 578934

M PREPHENATE LBRACKET C RBRACKET
constant: false
in compartment: 570138
boundary condition: false
is: PREPHENATE
is: C00254
type: Species
initial concentration: NaN
has only substance units: false
is: pphn
name: prephenate
initial amount: NaN

M UROCANATE LBRACKET C RBRACKET
boundary condition: false
name: urocanate
is: C00785
constant: false
initial concentration: NaN
initial amount: NaN
is: UROCANATE
in compartment: 570138
has only substance units: false
type: Species

581147
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

573459
stoichiometry: 2.0
species: M L DASH 1 DASH PHOSPHATIDYL DASH GLYCEROL LBRACKET C RBRACKET
type: SpeciesReference

609316
stoichiometry: 1.0
species: M 4 DASH AMINO DASH BUTYRATE LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 173 LBRACKET C RBRACKET
is: CPD-173
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: salicyl alcohol
type: Species

609063
stoichiometry: 1.0
species: M D DASH LACTATE LBRACKET C RBRACKET
type: SpeciesReference

579320
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

M 3OH DASH 4P DASH OH DASH ALPHA DASH KETOBUTYRATE LBRACKET C RBRACKET
type: Species
is: C06054
initial amount: NaN
constant: false
name: 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate
boundary condition: false
in compartment: 570138
has only substance units: false
initial concentration: NaN
is: 3OH-4P-OH-ALPHA-KETOBUTYRATE
is: ohpb

593656
stoichiometry: 1.0
species: M CHARGED DASH GLT DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

601029
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

606642
reactant: 606654
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of choline
type: Reaction

R DTDPDEHYDRHAMEPIM DASH RXN
product: 606281
reactant: 606269
notes: GENE_ASSOCIATION: ACIAD0080
is: DTDPDEHYDRHAMEPIM-RXN
is: TDPDRE
fast: false
reversible: true
name: dtdp-4-dehydrorhamnose 3,5-epimerase
type: Reaction

576249
stoichiometry: 2.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

577491
stoichiometry: 1.0
species: M DEHYDROQUINATE LBRACKET P RBRACKET
type: SpeciesReference

590428
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

581268
reactant: 581280
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of octadenoate
type: Reaction

616827
stoichiometry: 1.0
species: M ILE LBRACKET C RBRACKET
type: SpeciesReference

612339
stoichiometry: 1.0
species: M FRUCTOSE DASH 6P LBRACKET C RBRACKET
type: SpeciesReference

593066
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

572555
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH QUINATE
product: 585929
reactant: 585917
notes: GENE_ASSOCIATION: ACIAD1715 or ACIAD2984
is: TRANS-RXNIM-5918
fast: false
reversible: true
name: transport of quinate [extraorganism;periplasm](passive)
type: Reaction

608386
stoichiometry: 0.04
species: M CHARGED DASH GLN DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

R ORNDECARBOX DASH RXN
fast: false
product: 574300
notes: GENE_ASSOCIATION: ACIAD2768
type: Reaction
reversible: false
is: ORNDECARBOX-RXN
product: 574288
name: ornithine decarboxylase
is: ORNDC
reactant: 574276

615476
stoichiometry: 1.0
species: M L DASH ASPARTATE DASH SEMIALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

614099
stoichiometry: 1.0
species: M HOMO DASH SER LBRACKET C RBRACKET
type: SpeciesReference

595793
stoichiometry: 1.0
species: M GDP LBRACKET C RBRACKET
type: SpeciesReference

594996
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

580478
stoichiometry: 1.0
species: M ALLANTOATE LBRACKET C RBRACKET
type: SpeciesReference

603706
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

585061
stoichiometry: 1.0
species: M LEU LBRACKET C RBRACKET
type: SpeciesReference

593524
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R METHYLISOCITRATE DASH LYASE DASH RXN
name: methylisocitrate lyase
reversible: false
reactant: 594732
product: 594744
fast: false
is: METHYLISOCITRATE-LYASE-RXN
notes: GENE_ASSOCIATION: ACIAD2758
type: Reaction
product: 594756
is: MCITL2

600175
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

572964
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

612206
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

R RXN0 DASH 302
fast: false
is: MECDPS
reactant: 575118
product: 575142
type: Reaction
is: RXN0-302
reversible: false
name: 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase
notes: GENE_ASSOCIATION: ACIAD1996
product: 575130

592354
stoichiometry: 1.0
species: M GLY DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 110 LBRACKET C RBRACKET
name: salicylate
boundary condition: false
initial concentration: NaN
initial amount: NaN
is: CPD-110
type: Species
constant: false
in compartment: 570138
has only substance units: false
is: C00805

596069
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

602948
stoichiometry: 1.0
species: M FUM LBRACKET C RBRACKET
type: SpeciesReference

R GLYCEROL DASH KIN DASH RXN
notes: GENE_ASSOCIATION: ACIAD0930
reactant: 617031
product: 617067
fast: false
is: GLYCEROL-KIN-RXN
reversible: false
product: 617055
reactant: 617043
type: Reaction
name: glycerol kinase
is: GLYK

587217
stoichiometry: 1.0
species: M 5 DASH PHOSPHO DASH RIBOSYL DASH GLYCINEAMIDE LBRACKET C RBRACKET
type: SpeciesReference

600440
stoichiometry: 1.0
species: 571016
type: SpeciesReference

611930
stoichiometry: 1.0
species: M COUMARATE LBRACKET C RBRACKET
type: SpeciesReference

578537
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

R PDXA DASH RXN
notes: GENE_ASSOCIATION: ACIAD3010
product: 581316
reactant: 581292
type: Reaction
is: PDX5PS
name: 4- (phosphohydroxy)-l-threonine dehydrogenase
reversible: false
reactant: 581304
fast: false
is: PDXA-RXN

598948
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

596971
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

616462
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

611327
stoichiometry: 1.0
species: M TREHALOSE DASH 6P LBRACKET C RBRACKET
type: SpeciesReference

616318
stoichiometry: 1.0
species: M CYTIDINE LBRACKET C RBRACKET
type: SpeciesReference

614312
stoichiometry: 1.0
species: M THIAMINE DASH PYROPHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

613518
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

583986
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

573891
stoichiometry: 1.0
species: M ASN LBRACKET E RBRACKET
type: SpeciesReference

R GLUTATHIONE DASH REDUCT DASH NADPH DASH RXN
name: glutathione reductase (nadph)
is: GTHOr
reactant: 602503
fast: false
reactant: 602527
product: 602551
is: GLUTATHIONE-REDUCT-NADPH-RXN
product: 602539
notes: GENE_ASSOCIATION:
reactant: 602515
reversible: true
type: Reaction

R CMPKI DASH RXN
type: Reaction
reversible: true
notes: GENE_ASSOCIATION: ACIAD2348
product: 578032
product: 578044
name: cmp kinase
reactant: 578008
fast: false
reactant: 578020
is: CMPKI-RXN
is: CYTK1

599430
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

M KDO DASH LIPID DASH IVA LBRACKET C RBRACKET
in compartment: 570138
constant: false
initial concentration: NaN
has only substance units: false
is: kdolipid4
name: (kdo)-lipid iv(a)
boundary condition: false
initial amount: NaN
is: C06024
is: KDO-LIPID-IVA
type: Species

M C18 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
is: od2coa
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans-octadec-2-enoyl-coa
type: Species

605258
stoichiometry: 1.0
species: M HOMOSERINE DASH LACTONE LBRACKET C RBRACKET
type: SpeciesReference

612929
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

R UREASE DASH RXN
fast: false
is: UREA
reactant: 576996
product: 577008
name: urease
product: 577020
is: UREASE-RXN
type: Reaction
reactant: 576984
reversible: false
notes: GENE_ASSOCIATION: ACIAD1089 and ACIAD1090 and ACIAD1091

581484
stoichiometry: 1.0
species: M GLYCERATE LBRACKET C RBRACKET
type: SpeciesReference

611182
stoichiometry: 1.0
species: M RIBULOSE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

614223
stoichiometry: 1.0
species: M KDO2 DASH LIPID DASH A LBRACKET C RBRACKET
type: SpeciesReference

617163
stoichiometry: 1.0
species: M 3 DASH ENOLPYRUVYL DASH SHIKIMATE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

M ANTHRANILATE LBRACKET E RBRACKET
initial amount: NaN
is: C00108
is: anth
initial concentration: NaN
type: Species
in compartment: 570126
has only substance units: false
constant: false
name: 2-aminobenzoate
is: ANTHRANILATE
boundary condition: false

575577
stoichiometry: 1.0
species: M CROTONYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

586158
stoichiometry: 1.0
species: 570895
type: SpeciesReference

M SO3 LBRACKET C RBRACKET
initial concentration: NaN
boundary condition: false
is: SO3
type: Species
in compartment: 570138
constant: false
is: C00094
has only substance units: false
initial amount: NaN
is: so3
name: so3-2

575010
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

580738
stoichiometry: 1.0
species: M BENZOATE LBRACKET C RBRACKET
type: SpeciesReference

M MALONYL DASH ACP LBRACKET C RBRACKET
is: MALONYL-ACP
initial concentration: NaN
name: malonyl-acp
constant: false
has only substance units: false
in compartment: 570138
boundary condition: false
initial amount: NaN
is: malACP
is: C01209
type: Species

M BENZYL DASH ALCOHOL LBRACKET C RBRACKET
in compartment: 570138
name: benzyl alcohol
constant: false
type: Species
is: C00556
has only substance units: false
initial concentration: NaN
is: BENZYL-ALCOHOL
boundary condition: false
initial amount: NaN

R TRYPSYN DASH RXN
notes: GENE_ASSOCIATION: ACIAD0642 and ACIAD0636
is: TRYPSYN-RXN
is: TRPS1
type: Reaction
product: 615368
reactant: 615344
reactant: 615332
product: 615380
reversible: false
product: 615356
name: tryptophan synthase
fast: false

607568
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

596466
stoichiometry: 2.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

R DIHYDROXYMETVALDEHYDRAT DASH RXN
name: dihydroxy-acid dehydratase
notes: GENE_ASSOCIATION: ACIAD3636 or ACIAD1266
product: 581244
is: DIHYDROXYMETVALDEHYDRAT-RXN
reversible: true
fast: false
type: Reaction
is: DHAD2
product: 581256
reactant: 581232

M 2 DASH OCTAPRENYL DASH 6 DASH METHOXYPHENOL LBRACKET C RBRACKET
is: 2omph
is: 2-OCTAPRENYL-6-METHOXYPHENOL
initial amount: NaN
boundary condition: false
constant: false
has only substance units: false
in compartment: 570138
initial concentration: NaN
name: 2-octaprenyl-6-methoxyphenol
type: Species
is: C05812

618803
stoichiometry: 1.0
species: M C10 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH 162
name: transport of l-glutamate [extraorganism;cytosol](secondary symport)
product: 605753
reversible: false
reactant: 605741
is: TRANS-RXN-162
fast: false
type: Reaction
product: 605765
reactant: 605728
is: GLUt2rpp
notes: GENE_ASSOCIATION: ACIAD1339 or ACIAD0319 or ACIAD0481 or ACIAD3230

611497
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

R RXNIM DASH 6211
reactant: 611545
product: 611581
is: RXNIM-6211
name: 3,4-dihydroxyphenylpropionyl-coa dehydrogenase
fast: false
product: 611569
reversible: true
reactant: 611557
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1723

608301
stoichiometry: 1.0
species: 571052
type: SpeciesReference

R TRANS DASH RXN DASH ETHANESULFONATE
reversible: false
notes: GENE_ASSOCIATION: ACIAD0034 and ACIAD0035 and ACIAD0037 and ACIAD0038 or ACIAD1523 and ACIAD1524 and ACIAD1525 and ACIAD1526 or ACIAD1586 and ACIAD1587 and ACIAD1593 and ACIAD1601
type: Reaction
product: 609896
product: 609908
name: transport of ethane sulfonate [extraorganism;cytosol](primary active atp)
reactant: 609872
fast: false
reactant: 609848
product: 609884
reactant: 609860
is: TRANS-RXNIM-5913

583714
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXNIM DASH 5839 DASH BIS
reversible: false
product: 610557
is: ARGt3pp
notes: GENE_ASSOCIATION: ACIAD0966
reactant: 610533
product: 610569
fast: false
is: TRANS-RXNIM-5839
name: transport of l-arginine [cytosol;extraorganism](secondary antiport)
reactant: 610545
type: Reaction

595598
stoichiometry: 1.0
species: M THZ DASH P LBRACKET C RBRACKET
type: SpeciesReference

582338
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

M CIS DASH CIS DASH MUCONATE LBRACKET E RBRACKET
name: cis,cis-muconate
boundary condition: false
is: C02480
is: CIS-CIS-MUCONATE
in compartment: 570126
type: Species
initial amount: NaN
has only substance units: false
initial concentration: NaN
constant: false

606870
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

586266
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

R RXNIM DASH 6210
product: 611509
product: 611533
reactant: 611484
reactant: 611497
reactant: 611472
notes: GENE_ASSOCIATION: ACIAD1724
type: Reaction
reversible: false
product: 611521
fast: false
is: RXNIM-6210
name: 3,4-dihydroxyphenylpropionate coa ligase

592426
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

577731
stoichiometry: 1.0
species: M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET P RBRACKET
type: SpeciesReference

576021
stoichiometry: 1.0
species: M UREA LBRACKET E RBRACKET
type: SpeciesReference

604596
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

M UDP DASH AA DASH GLUTAMATE LBRACKET C RBRACKET
is: UDP-AA-GLUTAMATE
is: uamag
in compartment: 570138
initial concentration: NaN
initial amount: NaN
constant: false
is: C00692
name: udp-n-acetylmuramoyl-l-alanyl-d-glutamate
type: Species
boundary condition: false
has only substance units: false

583207
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET E RBRACKET
type: SpeciesReference

M C8 COLON 0 LBRACKET C RBRACKET
constant: false
type: Species
is: CPD-195
in compartment: 570138
initial amount: NaN
boundary condition: false
is: octa
initial concentration: NaN
has only substance units: false
is: C06423
name: octanoate

615836
reactant: 615848
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of glycine
type: Reaction

574842
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET
type: SpeciesReference

607062
stoichiometry: 2.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

615140
stoichiometry: 1.0
species: M XANTHINE LBRACKET E RBRACKET
type: SpeciesReference

609111
stoichiometry: 1.0
species: M BUTYRYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

593499
stoichiometry: 1.0
species: 570607
type: SpeciesReference

R RXNIM DASH 6212
name: 4-hydroxy-benzyl-alcohol dehydrogenase
product: 611400
notes: GENE_ASSOCIATION: ACIAD1429 or ACIAD1578
reversible: true
product: 611412
reactant: 611375
type: Reaction
fast: false
reactant: 611388
is: RXNIM-6212

572110
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R RXN0 DASH 305
product: 575214
reactant: 575202
notes: GENE_ASSOCIATION: ACIAD3075
is: RXN0-305
is: HPYRI
fast: false
reversible: true
name: hydroxypyruvate isomerase
type: Reaction

580346
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

R SHIKIMATE DASH 5 DASH DEHYDROGENASE DASH RXN
product: 600428
is: SHK3Dr
reactant: 600404
type: Reaction
product: 600416
reversible: true
is: SHIKIMATE-5-DEHYDROGENASE-RXN
notes: GENE_ASSOCIATION: ACIAD0418
reactant: 600392
name: shikimate 5-dehydrogenase
fast: false

R C18 COLON 0 DASH 3OXOCOA DASH THIOLASE DASH RXN
product: 599262
reactant: 599225
is: KETOACYLCOATHIOL-RXN
product: 599250
is: KAT8
reactant: 599238
reversible: true
type: Reaction
fast: false
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
name: 3oxoacyl-coa thiolase (c18:0)

597344
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

603958
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R 1PFRUCTPHOSN DASH RXN
product: 609497
is: FRUK
fast: false
type: Reaction
reversible: false
is: 1PFRUCTPHOSN-RXN
reactant: 609473
product: 609485
name: 1-phosphofructokinase
notes: GENE_ASSOCIATION: ACIAD1992
reactant: 609461

600897
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

595502
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

601222
stoichiometry: 1.0
species: M D DASH SERINE LBRACKET C RBRACKET
type: SpeciesReference

588298
stoichiometry: 1.0
species: M CIT LBRACKET C RBRACKET
type: SpeciesReference

R FADSYN DASH RXN
is: FMNAT
type: Reaction
reactant: 612375
fast: false
is: FADSYN-RXN
reactant: 612387
product: 612399
reversible: true
product: 612411
name: fmn adenylyltransferase
notes: GENE_ASSOCIATION: ACIAD0023

588887
stoichiometry: 1.0
species: M P DASH RIBOSYL DASH 4 DASH SUCCCARB DASH AMINOIMIDAZOLE LBRACKET C RBRACKET
type: SpeciesReference

M AMINO DASH DIOXY DASH PHOSPHORIBITYLAMINO DASH PYR LBRACKET C RBRACKET
has only substance units: false
is: 5aprbu
is: C04454
initial concentration: NaN
in compartment: 570138
is: AMINO-DIOXY-PHOSPHORIBITYLAMINO-PYR
name: 5-amino-2,6-dioxy-4-(5'-phosphoribitylamino)pyrimidine
type: Species
constant: false
boundary condition: false
initial amount: NaN

610316
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

571220
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-octadec-9-enal
type: Species

M GLN LBRACKET C RBRACKET
initial amount: NaN
boundary condition: false
in compartment: 570138
is: gln-L
has only substance units: false
name: l-glutamine
constant: false
is: GLN
type: Species
is: C00064
initial concentration: NaN

R MALONYL DASH COA DASH ACP DASH TRANSACYL DASH RXN
reversible: true
reactant: 591633
reactant: 591645
product: 591669
name: malonyl-coa-acp transacylase
notes: GENE_ASSOCIATION: ACIAD0870 and ACIAD0872
product: 591657
is: MALONYL-COA-ACP-TRANSACYL-RXN
is: MCOATA
fast: false
type: Reaction

577503
stoichiometry: 1.0
species: M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET P RBRACKET
type: SpeciesReference

605981
stoichiometry: 1.0
species: M MAL LBRACKET E RBRACKET
type: SpeciesReference

600740
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

608712
stoichiometry: 0.04
species: M PRO DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

607278
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

570270
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ethane sulfonate
type: Species

M CHARGED DASH GLT DASH TRNAS LBRACKET C RBRACKET
has only substance units: false
initial concentration: NaN
is: CHARGED-GLT-TRNAS
boundary condition: false
name: charged glutamate trna
constant: false
in compartment: 570138
type: Species
is: glutrna
initial amount: NaN
is: C02987

R C10 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
product: 585905
reversible: false
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
fast: false
name: enoyl-coa hydratase (c10:0)
is: ENOYL-COA-HYDRAT-RXN
reactant: 585893
is: ECOAH4
reactant: 585881
type: Reaction

593886
stoichiometry: 1.0
species: M HS LBRACKET C RBRACKET
type: SpeciesReference

573783
stoichiometry: 1.0
species: M CPD DASH 77 LBRACKET C RBRACKET
type: SpeciesReference

593282
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

618116
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

607820
stoichiometry: 1.0
species: M CYTOSINE LBRACKET C RBRACKET
type: SpeciesReference

590657
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET
type: SpeciesReference

614522
stoichiometry: 1.0
species: M C14 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

604500
stoichiometry: 1.0
species: M PHE DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

590041
reactant: 590053
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of toluene
type: Reaction

574734
reactant: 574746
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of cis,cis-muconate
type: Reaction

M CPD DASH 77 LBRACKET C RBRACKET
is: CPD-77
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 4-diphosphocytidyl-2-c-methylerythritol
type: Species

601330
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: SpeciesReference

584389
stoichiometry: 1.0
species: M P DASH HYDROXY DASH PHENYLPYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

589524
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

587529
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

589451
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 578 LBRACKET C RBRACKET
name: urea-1-carboxylate
is: CPD-578
constant: false
type: Species
in compartment: 570138
initial concentration: NaN
has only substance units: false
initial amount: NaN
boundary condition: false
is: C01010

591753
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

604198
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

R BENZOATE DASH CIS DASH DIOL DASH DEHYDROGENASE DASH RXN
is: BENZOATE-CIS-DIOL-DEHYDROGENASE-RXN
product: 598621
reactant: 598597
name: cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase
type: Reaction
reactant: 598585
product: 598633
reversible: false
product: 598609
notes: GENE_ASSOCIATION: ACIAD1439
fast: false

M C8 COLON 0 LBRACKET E RBRACKET
initial concentration: NaN
is: C06423
initial amount: NaN
has only substance units: false
constant: false
type: Species
is: octa
is: CPD-195
name: octanoate
in compartment: 570126
boundary condition: false

576478
stoichiometry: 0.62
species: M C12 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

575432
stoichiometry: 1.0
species: M GDP DASH MANNOSE LBRACKET C RBRACKET
type: SpeciesReference

570980
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-hexadec-7-enal
type: Species

617260
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

R ACSERLY DASH RXN
reactant: 610376
product: 610388
reactant: 610364
is: CYSS
product: 610400
is: ACSERLY-RXN
type: Reaction
name: cysteine synthase
reversible: true
notes: GENE_ASSOCIATION: ACIAD1662 or ACIAD3071
fast: false

M D DASH GLUCARATE LBRACKET C RBRACKET
is: D-GLUCARATE
is: C00818
name: d-glucarate
has only substance units: false
in compartment: 570138
boundary condition: false
is: glcr
constant: false
type: Species
initial concentration: NaN
initial amount: NaN

608640
stoichiometry: 0.07
species: M LEU DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

609534
stoichiometry: 1.0
species: 570823
type: SpeciesReference

615680
stoichiometry: 3.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

613664
stoichiometry: 1.0
species: 570799
type: SpeciesReference

612892
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

571954
stoichiometry: 1.0
species: M C18 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: SpeciesReference

614948
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

617996
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET
type: SpeciesReference

592030
stoichiometry: 1.0
species: M GDP LBRACKET C RBRACKET
type: SpeciesReference

R RIB5PISOM DASH RXN
product: 595708
reactant: 595696
notes: GENE_ASSOCIATION: ACIAD1358
is: RIB5PISOM-RXN
is: RPI
fast: false
reversible: true
name: ribose 5-phosphate epimerase
type: Reaction

R C18 COLON 1 LPAREN C9 RPAREN DASH 3OXOCOA DASH THIOLASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
name: 3oxoacyl-coa thiolase (c18:1(c9))
product: 572687
reversible: true
reactant: 572651
reactant: 572663
is: KETOACYLCOATHIOL-RXN
product: 572675
type: Reaction
fast: false

M TDP LBRACKET C RBRACKET
has only substance units: false
is: TDP
initial concentration: NaN
is: dtdp
type: Species
boundary condition: false
initial amount: NaN
constant: false
is: C00363
name: dtdp
in compartment: 570138

575841
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: SpeciesReference

573939
stoichiometry: 1.0
species: M D DASH LACTATE LBRACKET C RBRACKET
type: SpeciesReference

582978
stoichiometry: 1.0
species: M CHARGED DASH ARG DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

R GLUTATHIONE DASH PEROXIDASE DASH RXN
reactant: 572855
reversible: false
type: Reaction
reactant: 572868
notes: GENE_ASSOCIATION: ACIAD0193 or ACIAD2085
name: glutathione peroxidase
is: GLUTATHIONE-PEROXIDASE-RXN
is: GTHP
product: 572880
fast: false
product: 572892

595224
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

618212
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

580018
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET
type: SpeciesReference

593910
stoichiometry: 1.0
species: M DTDP DASH D DASH GLUCOSE LBRACKET C RBRACKET
type: SpeciesReference

609655
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: SpeciesReference

603910
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

607110
stoichiometry: 1.0
species: M CPDIM DASH 6115 LBRACKET C RBRACKET
type: SpeciesReference

M 2 DASH DEHYDROPANTOATE LBRACKET C RBRACKET
initial amount: NaN
has only substance units: false
in compartment: 570138
name: 2-dehydropantoate
constant: false
boundary condition: false
initial concentration: NaN
is: 2dhp
is: 2-DEHYDROPANTOATE
type: Species
is: C00966

607784
stoichiometry: 1.0
species: M CYTIDINE LBRACKET C RBRACKET
type: SpeciesReference

577262
stoichiometry: 1.0
species: M D DASH SEDOHEPTULOSE DASH 7 DASH P LBRACKET C RBRACKET
type: SpeciesReference

600812
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

590440
stoichiometry: 1.0
species: M CARBAMOYL DASH P LBRACKET C RBRACKET
type: SpeciesReference

585653
stoichiometry: 1.0
species: 571040
type: SpeciesReference

M GLUCONATE LBRACKET C RBRACKET
in compartment: 570138
initial amount: NaN
has only substance units: false
is: glcn
constant: false
boundary condition: false
initial concentration: NaN
type: Species
is: GLUCONATE
name: gluconate
is: C00257

592608
stoichiometry: 1.66
species: M GDP DASH MANNOSE LBRACKET C RBRACKET
type: SpeciesReference

583411
stoichiometry: 1.0
species: M 3 DASH KETO DASH ADIPYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

588995
stoichiometry: 1.0
species: M GERANYL DASH PP LBRACKET C RBRACKET
type: SpeciesReference

591657
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

576141
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

574337
stoichiometry: 1.0
species: M C18 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: SpeciesReference

M C8 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
initial concentration: NaN
initial amount: NaN
type: Species
in compartment: 570138
has only substance units: false
constant: false
is: C05751
is: toct2eACP
boundary condition: false
name: trans-octa-2-enoyl-acp

M DCTP LBRACKET C RBRACKET
is: dctp
is: C00458
in compartment: 570138
initial concentration: NaN
has only substance units: false
name: dctp
initial amount: NaN
constant: false
is: DCTP
type: Species
boundary condition: false

R RIBOKIN DASH RXN
notes: GENE_ASSOCIATION: ACIAD2392
reversible: false
is: RBK
name: ribokinase
is: RIBOKIN-RXN
type: Reaction
product: 591319
reactant: 591295
product: 591307
reactant: 591283
fast: false

590873
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

598248
stoichiometry: 1.0
species: M GLY LBRACKET C RBRACKET
type: SpeciesReference

R RXN DASH 2425
product: 588070
reactant: 588058
reactant: 588046
notes: GENE_ASSOCIATION: ACIAD1692
is: RXN-2425
fast: false
reversible: false
name: trans-2,3-dehydroadipyl-coa hydratase
type: Reaction

594936
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

585761
stoichiometry: 1.0
species: M NITRATE LBRACKET C RBRACKET
type: SpeciesReference

575793
stoichiometry: 2.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

586917
stoichiometry: 0.022
species: M C14 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

587637
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

590500
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

584305
stoichiometry: 1.0
species: M C10 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

R C16 COLON 1 LPAREN C7 RPAREN DASH 3OXOACP DASH SYNTHASE DASH RXN
reactant: 600572
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
product: 600596
name: 3oxoacyl-acp synthase (c16:1(c7))
is: 3-OXOACYL-ACP-SYNTH-RXN
type: Reaction
product: 600584
reactant: 600560
product: 600608
reversible: false
fast: false

M C6 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
is: C05747
constant: false
initial amount: NaN
name: 3-hydroxyhexanoyl-acp
has only substance units: false
is: 3hhexACP
type: Species
initial concentration: NaN
in compartment: 570138
boundary condition: false

588142
stoichiometry: 1.0
species: 570426
type: SpeciesReference

587061
stoichiometry: 1.0
species: M 8 DASH AMINO DASH 7 DASH OXONONANOATE LBRACKET C RBRACKET
type: SpeciesReference

614678
reactant: 614691
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of d-galactarate
type: Reaction

571666
stoichiometry: 1.0
species: M DGTP LBRACKET C RBRACKET
type: SpeciesReference

574950
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R C18 COLON 0 DASH 3OXOACP DASH SYNTHASE DASH RXN
product: 574337
reactant: 574313
reactant: 574325
name: 3oxoacyl-acp synthase (c18:0)
reversible: false
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
type: Reaction
product: 574361
product: 574349
fast: false
is: 3-OXOACYL-ACP-SYNTH-RXN
is: 3OAS180

572002
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

590729
stoichiometry: 1.0
species: M ACET LBRACKET E RBRACKET
type: SpeciesReference

615908
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

571377
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

R OHMETHYLBILANESYN DASH RXN
product: 603176
reactant: 603152
fast: false
notes: GENE_ASSOCIATION: ACIAD0286
is: OHMETHYLBILANESYN-RXN
type: Reaction
is: HMBS
name: hydroxymethylbilane synthase
reactant: 603164
product: 603188
reversible: false

573675
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

611074
stoichiometry: 40.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

583640
stoichiometry: 0.259
species: M UTP LBRACKET C RBRACKET
type: SpeciesReference

574047
stoichiometry: 1.0
species: M CARNITINE LBRACKET C RBRACKET
type: SpeciesReference

589007
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

R C18 COLON 1 LPAREN C9 RPAREN DASH 2ENOYLACP DASH REDUCTASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD3116
name: 2enoyl-acp reductase (c18:1(c9))
is: ENOYL-ACP-REDUCT-NADH-RXN
reactant: 590344
type: Reaction
fast: false
reversible: false
product: 590380
product: 590368
reactant: 590356

606762
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: SpeciesReference

578393
stoichiometry: 1.0
species: M C4 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: SpeciesReference

570871
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-hydroxyoctadec-9-enoyl-acp
type: Species

607338
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

575637
product: 575661
reactant: 575649
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of d-aspartate [extraorganism;cytosol](passive)
type: Reaction

576948
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

615776
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

593391
stoichiometry: 1.0
species: M D DASH 4 DASH HYDROXY DASH 2 DASH KETO DASH GLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

R GDP DASH MANNOSE DASH 6 DASH DEHYDROGENASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD0087
product: 597139
fast: false
reactant: 597103
reactant: 597115
type: Reaction
reversible: true
product: 597127
is: GDP-MANNOSE-6-DEHYDROGENASE-RXN
name: gdp-mannose 6-dehydrogenase
reactant: 597091

603428
stoichiometry: 1.0
species: M C16 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

586771
stoichiometry: 1.0
species: M CPD DASH 335 LBRACKET C RBRACKET
type: SpeciesReference

R RXN0 DASH 1461
fast: false
reactant: 607038
is: CPPPGO
is: RXN0-1461
product: 607074
product: 607062
type: Reaction
reactant: 607026
reversible: false
product: 607050
name: coproporphyrinogen oxidase
notes: GENE_ASSOCIATION: ACIAD3250

590150
stoichiometry: 1.0
species: M AMINO DASH RIBOSYLAMINO DASH 1H DASH 3H DASH PYR DASH DIONE DASH P LBRACKET C RBRACKET
type: SpeciesReference

587925
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

616607
stoichiometry: 1.0
species: M C14 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

614756
product: 614780
reactant: 614768
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of butanoate [extraorganism;cytosol](passive)
type: Reaction

573471
stoichiometry: 1.0
species: M GLYCEROL LBRACKET C RBRACKET
type: SpeciesReference

593306
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

R DALADALALIG DASH RXN
product: 606233
name: d-alanine--d-alanine ligase
type: Reaction
reactant: 606209
product: 606257
product: 606245
reversible: true
is: ALAALAr
is: DALADALALIG-RXN
fast: false
reactant: 606221
notes: GENE_ASSOCIATION: ACIAD3515

577154
product: 577178
reactant: 577166
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of benzyl alcohol [extraorganism;cytosol](passive)
type: Reaction

R UDPNACETYLGLUCOSAMACYLTRANS DASH RXN
type: Reaction
product: 608097
notes: GENE_ASSOCIATION: ACIAD1382
product: 608109
fast: false
is: UDPNACETYLGLUCOSAMACYLTRANS-RXN
reversible: true
name: acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-acyltransferase
is: UAGAAT
reactant: 608073
reactant: 608085

596105
stoichiometry: 1.0
species: M OROTATE LBRACKET C RBRACKET
type: SpeciesReference

R C18 COLON 1 LPAREN C9 RPAREN DASH COA DASH DEHYDROGENASE DASH RXN
product: 598380
is: ACYLCOADEHYDROG-RXN
reactant: 598356
product: 598368
reactant: 598344
type: Reaction
name: acyl-coa dehydrogenase (c18:1(c9))
fast: false
reversible: false
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566

574626
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

607495
stoichiometry: 0.08
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

586844
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

591801
reactant: 591813
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of benzoate
type: Reaction

600392
stoichiometry: 1.0
species: M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET C RBRACKET
type: SpeciesReference

570571
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-oxotetradec-4-enoyl-coa
type: Species

614198
stoichiometry: 2.0
species: 570703
type: SpeciesReference

580677
reactant: 580690
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of so3-2
type: Reaction

608797
stoichiometry: 0.03
species: M ARG DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

612146
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

609425
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

575997
stoichiometry: 1.0
species: M UDP DASH GLACTOSE LBRACKET C RBRACKET
type: SpeciesReference

596743
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

612290
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

583568
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

584161
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET
type: SpeciesReference

584953
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

582038
stoichiometry: 1.0
species: M C4 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

580128
stoichiometry: 1.0
species: M SHIKIMATE LBRACKET E RBRACKET
type: SpeciesReference

591548
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

599838
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

R C8 COLON 0 DASH 3OXOACP DASH SYNTHASE DASH RXN
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
product: 572843
product: 572819
reactant: 572795
fast: false
type: Reaction
product: 572831
name: 3oxoacyl-acp synthase (c8:0)
is: 3OAS80
reversible: false
reactant: 572807
is: 3-OXOACYL-ACP-SYNTH-RXN

576924
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

600969
stoichiometry: 1.0
species: M BENZOATE LBRACKET P RBRACKET
type: SpeciesReference

615608
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M L DASH ORNITHINE LBRACKET E RBRACKET
constant: false
has only substance units: false
name: l-ornithine
initial amount: NaN
in compartment: 570126
is: C01602
type: Species
initial concentration: NaN
is: orn
is: L-ORNITHINE
boundary condition: false

R C6 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
reversible: false
is: ENOYL-COA-HYDRAT-RXN
is: ECOAH2
type: Reaction
reactant: 613979
name: enoyl-coa hydratase (c6:0)
product: 614003
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
reactant: 613991
fast: false

616680
stoichiometry: 1.0
species: M GLYCOLALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

606185
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

606978
stoichiometry: 1.0
species: M BENZYL DASH ALCOHOL LBRACKET C RBRACKET
type: SpeciesReference

R GLUTAMATESYN DASH RXN
is: GLUSy
is: GLUTAMATESYN-RXN
product: 577948
reactant: 577912
reactant: 577924
reversible: false
notes: GENE_ASSOCIATION: ACIAD3350 and ACIAD3349 or ACIAD2525 and ACIAD2526 and ACIAD2527
product: 577936
fast: false
name: glutamate synthase (nadph)
reactant: 577900
type: Reaction

615572
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

609764
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

586795
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

584809
stoichiometry: 1.37
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1949107276#R_C7_COLON_0_DASH_CARBOXY2ENOYLCOA_DASH_HYDRATASE_DASH_RXN
product: 594624
reactant: 594612
reactant: 594600
notes: GENE_ASSOCIATION: ACIAD1692
is: RXNIM-6201
fast: false
reversible: false
name: dicarboxylate enoyl-coa hydratase (c7:0)
type: Reaction

M DEOXYGUANOSINE LBRACKET C RBRACKET
is: C00330
has only substance units: false
initial amount: NaN
name: deoxyguanosine
constant: false
is: dgsn
type: Species
boundary condition: false
initial concentration: NaN
in compartment: 570138
is: DEOXYGUANOSINE

R DGMP DASH NUCLEOTIDASE DASH RXN
reversible: false
product: 576551
name: dgmp nucleotidase
product: 576563
type: Reaction
reactant: 576526
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227
is: RXNIM-6195
reactant: 576539
is: NTD8pp
fast: false

588214
stoichiometry: 1.0
species: M MAL LBRACKET E RBRACKET
type: SpeciesReference

601114
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: SpeciesReference

M N DASH ALPHA DASH ACETYLORNITHINE LBRACKET C RBRACKET
initial amount: NaN
is: N-ALPHA-ACETYLORNITHINE
name: n-alpha-acetylornithine
has only substance units: false
in compartment: 570138
initial concentration: NaN
is: C00437
type: Species
boundary condition: false
constant: false
is: acorn

595152
stoichiometry: 1.0
species: M METHYLENE DASH THF LBRACKET C RBRACKET
type: SpeciesReference

M HIS DASH TRNAS LBRACKET C RBRACKET
has only substance units: false
initial amount: NaN
name: histidine trna
type: Species
is: trnahis
boundary condition: false
initial concentration: NaN
in compartment: 570138
constant: false
is: C01643
is: HIS-TRNAS

617055
stoichiometry: 1.0
species: M GLYCEROL DASH 3P LBRACKET C RBRACKET
type: SpeciesReference

R ATPSYN DASH RXN
type: Reaction
product: 585569
fast: false
reactant: 585532
name: h(+)-transporting atp synthase
product: 585544
notes: GENE_ASSOCIATION: ACIAD0178 and ACIAD0180 and ACIAD0182 and ACIAD0183 and ACIAD0184 and ACIAD0185 and ACIAD0186 and ACIAD0187 and ACIAD0188
is: ATPSYN-RXN
product: 585557
is: ATPS4rpp
reversible: true
reactant: 585520
reactant: 585508

575913
stoichiometry: 1.0
species: M BUTANEDIOL LBRACKET C RBRACKET
type: SpeciesReference

M CPDIM DASH 6097 LBRACKET C RBRACKET
is: 34dhpac
is: C04043
in compartment: 570138
has only substance units: false
constant: false
name: protocatechualdehyde
initial amount: NaN
initial concentration: NaN
is: CPDIM-6097
boundary condition: false
type: Species

610834
stoichiometry: 2.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET
type: SpeciesReference

587108
stoichiometry: 1.0
species: M THR LBRACKET E RBRACKET
type: SpeciesReference

M UDP DASH GLUCURONATE LBRACKET C RBRACKET
name: udp-d-glucuronate
initial amount: NaN
boundary condition: false
is: C00167
initial concentration: NaN
in compartment: 570138
has only substance units: false
is: udpglcur
is: UDP-GLUCURONATE
constant: false
type: Species

578646
stoichiometry: 1.0
species: M 2 DASH ACETO DASH LACTATE LBRACKET C RBRACKET
type: SpeciesReference

605366
stoichiometry: 1.0
species: M VANILLATE LBRACKET C RBRACKET
type: SpeciesReference

593415
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

579801
stoichiometry: 1.0
species: M DEMETHYLMENAQUINONE LBRACKET C RBRACKET
type: SpeciesReference

M P DASH RIBOSYL DASH 4 DASH SUCCCARB DASH AMINOIMIDAZOLE LBRACKET C RBRACKET
type: Species
is: 25aics
has only substance units: false
in compartment: 570138
constant: false
initial amount: NaN
initial concentration: NaN
name: 5'-phosphoribosyl-4-(n-succinocarboxamide)-5-aminoimidazole
is: P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE
is: C04823
boundary condition: false

M GAP LBRACKET C RBRACKET
initial amount: NaN
constant: false
name: glyceraldehyde-3-phosphate
is: GAP
is: C00661
type: Species
is: g3p
has only substance units: false
in compartment: 570138
initial concentration: NaN
boundary condition: false

604259
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

581592
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

616534
stoichiometry: 1.0
species: M PROTOPORPHYRINOGEN LBRACKET C RBRACKET
type: SpeciesReference

M D DASH ALANINE LBRACKET E RBRACKET
in compartment: 570126
type: Species
boundary condition: false
initial concentration: NaN
has only substance units: false
name: d-alanine
constant: false
initial amount: NaN
is: D-ALANINE
is: ala-D
is: C00133

M C5 COLON 0 LBRACKET C RBRACKET
name: pentanoate
constant: false
boundary condition: false
is: VALERATE
has only substance units: false
type: Species
is: C00803
initial concentration: NaN
in compartment: 570138
initial amount: NaN

M 5 DASH PHOSPHO DASH RIBOSYL DASH GLYCINEAMIDE LBRACKET C RBRACKET
is: C03838
is: 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE
has only substance units: false
boundary condition: false
type: Species
name: 5-phospho-ribosyl-glycineamide
initial concentration: NaN
initial amount: NaN
is: gar
in compartment: 570138
constant: false

M LIPOYL DASH ACP LBRACKET C RBRACKET
is: LIPOYL-ACP
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: lipoyl-acp
type: Species

M CPD DASH 3623 LBRACKET C RBRACKET
name: sebacate
initial amount: NaN
constant: false
boundary condition: false
is: C08277
has only substance units: false
in compartment: 570138
type: Species
is: CPD-3623
initial concentration: NaN

595442
stoichiometry: 1.0
species: M CHARGED DASH ASP DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH 3 COMMA 4 DASH DIHYDROXYBENZOATE DASH PERIP
product: 596947
reactant: 596935
notes: GENE_ASSOCIATION: ACIAD1709 or ACIAD0982
is: TRANS-RXNIM-5914
fast: false
reversible: true
name: 3,4-dihydroxybenzoate periplasm-cytoplasm transport
type: Reaction

R GALACTARDEHYDRA DASH RXN
product: 571690
type: Reaction
is: GALCTD
reactant: 571678
reversible: false
fast: false
name: galactarate dehydratase
is: GALACTARDEHYDRA-RXN
product: 571702
notes: GENE_ASSOCIATION: ACIAD0126

http://identifiers.org/biomodels.db/MODEL1949107276#R_C8_COLON_0_DASH_CARBOXY2ENOYLCOA_DASH_HYDRATASE_DASH_RXN
product: 618296
reactant: 618284
reactant: 618272
notes: GENE_ASSOCIATION: ACIAD1692
is: RXNIM-6201
fast: false
reversible: false
name: dicarboxylate enoyl-coa hydratase (c8:0)
type: Reaction

611291
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

618320
stoichiometry: 1.0
species: M FORMATE LBRACKET E RBRACKET
type: SpeciesReference

M SIROHYDROCHLORIN LBRACKET C RBRACKET
boundary condition: false
is: C05778
constant: false
initial concentration: NaN
is: scl
in compartment: 570138
has only substance units: false
name: sirohydrochlorin
type: Species
initial amount: NaN
is: SIROHYDROCHLORIN

600283
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

R OCTAPRENYL DASH METHYL DASH METHOXY DASH BENZOQ DASH OH DASH RXN
is: OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-RXN
product: 573447
notes: GENE_ASSOCIATION: ACIAD1128
reactant: 573423
name: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
fast: false
type: Reaction
reactant: 573435
reversible: false
is: OMMBLHX

579669
stoichiometry: 1.0
species: M C10 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

572062
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

611218
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

598839
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

M MANNOSE DASH 1P LBRACKET C RBRACKET
in compartment: 570138
is: man1p
initial concentration: NaN
boundary condition: false
initial amount: NaN
is: C03812
name: mannose-1-phosphate
is: MANNOSE-1P
type: Species
has only substance units: false
constant: false

601198
stoichiometry: 1.0
species: 570919
type: SpeciesReference

R SPONTPRO DASH RXN
is: SPONTPRO-RXN
reactant: 577575
type: Reaction
product: 577599
name: l-glutamate 5-semialdehyde dehydratase
is: G5SADs
notes: GENE_ASSOCIATION: SPONT SPONTANEOUS: TRUE
reversible: false
fast: false
product: 577587

R UDPNACETYLMURAMATEDEHYDROG DASH RXN
fast: false
product: 582086
product: 582098
name: udp-n-acetylmuramate dehydrogenase
is: UAPGR
reactant: 582062
is: UDPNACETYLMURAMATEDEHYDROG-RXN
reactant: 582074
reversible: true
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1945

617778
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET
type: SpeciesReference

575214
stoichiometry: 1.0
species: M TARTRONATE DASH S DASH ALD LBRACKET C RBRACKET
type: SpeciesReference

595176
stoichiometry: 1.0
species: M 5 COMMA 10 DASH METHENYL DASH THF LBRACKET C RBRACKET
type: SpeciesReference

R AIRS DASH RXN
is: AIRS-RXN
product: 612868
is: PRAIS
reversible: false
name: phosphoribosylformylglycinamidine cyclo-ligase
product: 612880
notes: GENE_ASSOCIATION: ACIAD2634
fast: false
reactant: 612856
reactant: 612844
type: Reaction
product: 612892

605741
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

R C10 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
product: 575829
reversible: false
name: 3oxoacyl-acp reductase (c10:0)
reactant: 575805
product: 575841
reactant: 575817
type: Reaction
is: 3-OXOACYL-ACP-REDUCT-RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD0871
is: 3OAR100

582254
stoichiometry: 1.0
species: M C14 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

577840
stoichiometry: 1.0
species: M CTP LBRACKET C RBRACKET
type: SpeciesReference

M KDO2 DASH LIPID DASH A LBRACKET C RBRACKET
boundary condition: false
initial concentration: NaN
is: KDO2-LIPID-A
constant: false
has only substance units: false
is: lipa
in compartment: 570138
name: kdo2-lipid a
initial amount: NaN
is: C06026
type: Species

R TRANS DASH RXN DASH C5 COLON 0
reactant: 589932
name: transport of pentanoate [extraorganism;cytosol](secondary symport)
product: 589944
product: 589956
reversible: true
type: Reaction
reactant: 589920
fast: false
is: TRANS-RXNIM-5726
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392

603092
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

575094
reactant: 575106
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: exchange flux of so42-
type: Reaction

581400
stoichiometry: 1.0
species: M PROPIONATE LBRACKET C RBRACKET
type: SpeciesReference

617911
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

611388
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

592838
stoichiometry: 1.0
species: M HYPOXANTHINE LBRACKET C RBRACKET
type: SpeciesReference

583791
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

580966
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

588778
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET
type: SpeciesReference

590596
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH 104 DASH BIS
name: transport of d-lactate [extraorganism;cytosol](secondary symport)
notes: GENE_ASSOCIATION: ACIAD0106
fast: false
type: Reaction
reactant: 613580
reactant: 613567
is: D-LACt2pp
product: 613604
product: 613592
reversible: true
is: TRANS-RXNIM-5908

576671
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

580238
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

605030
stoichiometry: 1.0
species: 571064
type: SpeciesReference

597453
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

602274
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

M PI LBRACKET C RBRACKET
in compartment: 570138
is: C00009
is: pi
name: phosphate
initial concentration: NaN
boundary condition: false
type: Species
is: Pi
constant: false
has only substance units: false
initial amount: NaN

616270
stoichiometry: 1.0
species: M DIHYDROXY DASH ACETONE DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

610208
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

614112
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

R DEPHOSPHOCOAKIN DASH RXN
reversible: true
notes: GENE_ASSOCIATION: ACIAD0359
name: dephospho-coa kinase
is: DEPHOSPHOCOAKIN-RXN
is: DPCOAK
reactant: 571365
type: Reaction
fast: false
product: 571377
product: 571389
reactant: 571352

586578
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

592777
stoichiometry: 1.0
species: M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET
type: SpeciesReference

R 4 PERIOD 1 PERIOD 1 PERIOD 32 DASH RXN
product: 571426
name: phosphoenolpyruvate carboxykinase (gtp)
notes: GENE_ASSOCIATION: ACIAD2842
is: PPCK
is: 4.1.1.32-RXN
reversible: false
product: 571438
product: 571450
reactant: 571414
fast: false
type: Reaction
reactant: 571402

578308
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

603356
stoichiometry: 1.0
species: M XANTHOSINE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

617838
stoichiometry: 1.0
species: M ASPARTYL DASH TRNAASN LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 148 LBRACKET C RBRACKET
initial concentration: NaN
boundary condition: false
name: octane
constant: false
type: Species
in compartment: 570138
initial amount: NaN
is: C01387
is: CPD-148
has only substance units: false

581364
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M 3 DASH CARBOXY DASH 3 DASH HYDROXY DASH ISOCAPROATE LBRACKET C RBRACKET
in compartment: 570138
is: 3-CARBOXY-3-HYDROXY-ISOCAPROATE
is: C02504
initial amount: NaN
is: 3c3hmp
boundary condition: false
has only substance units: false
initial concentration: NaN
constant: false
name: 3-carboxy-3-hydroxy-isocaproate
type: Species

588070
stoichiometry: 1.0
species: M 3 DASH HYDROXYADIPYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

591283
stoichiometry: 1.0
species: M RIBOSE LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH 62B
product: 583363
notes: GENE_ASSOCIATION: ACIAD0118 or ACIAD2662
name: transport of glycine [extraorganism;cytosol](secondary symport)
reversible: false
is: TRANS-RXN-62B
reactant: 583351
type: Reaction
product: 583375
is: GLYt2pp
reactant: 583339
fast: false

M CPD DASH 1772 LBRACKET C RBRACKET
in compartment: 570138
is: C06735
is: aacald
name: aminoacetaldehyde
constant: false
is: CPD-1772
type: Species
boundary condition: false
initial concentration: NaN
initial amount: NaN
has only substance units: false

R 2 DASH ISOPROPYLMALATESYN DASH RXN
fast: false
reversible: true
is: 2-ISOPROPYLMALATESYN-RXN
reactant: 598465
name: 2-isopropylmalate synthase
product: 598489
type: Reaction
reactant: 598453
notes: GENE_ASSOCIATION: ACIAD0530
is: IPPS
reactant: 598441
product: 598477

586614
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

572435
stoichiometry: 1.0
species: M UDP DASH AA DASH GLUTAMATE LBRACKET C RBRACKET
type: SpeciesReference

580894
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

590946
stoichiometry: 1.0
species: M CPD DASH 761 LBRACKET C RBRACKET
type: SpeciesReference

594768
stoichiometry: 1.0
species: M C12 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

578248
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

R ALANINE DASH DASH TRNA DASH LIGASE DASH RXN
reversible: false
reactant: 598887
is: ALANINE--TRNA-LIGASE-RXN
notes: GENE_ASSOCIATION: ACIAD1253
reactant: 598875
type: Reaction
name: alanine--trna ligase
product: 598911
product: 598899
is: ALATRS
reactant: 598863
product: 598924
fast: false

615356
stoichiometry: 1.0
species: M TRP LBRACKET C RBRACKET
type: SpeciesReference

579982
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

577984
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

R GLUTCYSLIG DASH RXN
reactant: 576852
notes: GENE_ASSOCIATION: ACIAD3549
product: 576912
product: 576900
reactant: 576864
is: GLUTCYSLIG-RXN
product: 576888
fast: false
name: glutamate--cysteine ligase
reactant: 576876
is: GLUCYS
reversible: false
type: Reaction

M PROPIONYL DASH P LBRACKET C RBRACKET
boundary condition: false
in compartment: 570138
is: ppap
constant: false
initial amount: NaN
has only substance units: false
type: Species
name: propionyl-p
is: PROPIONYL-P
initial concentration: NaN
is: C02876

613001
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

609219
stoichiometry: 1.0
species: M DAMP LBRACKET C RBRACKET
type: SpeciesReference

576888
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

588334
stoichiometry: 1.0
species: M PYRIDOXINE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

596538
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

612713
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

577370
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

597091
stoichiometry: 1.0
species: M GDP DASH MANNOSE LBRACKET C RBRACKET
type: SpeciesReference

588082
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

573579
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH C16 COLON 1 LPAREN C7 RPAREN
is: TRANS-RXNIM-5726
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
reactant: 589596
reactant: 589584
product: 589620
product: 589608
fast: false
name: transport of cis-hexadec-7-enoate [extraorganism;cytosol](secondary symport)
type: Reaction
reversible: true

M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET P RBRACKET
initial concentration: NaN
has only substance units: false
constant: false
is: C02637
in compartment: 570114
is: 3dhsk
initial amount: NaN
boundary condition: false
name: 3-dehydro-shikimate
type: Species
is: 3-DEHYDRO-SHIKIMATE

R IMIDPHOSDEHYD DASH RXN
product: 614173
product: 614161
is: IMIDPHOSDEHYD-RXN
is: IGPDH
notes: GENE_ASSOCIATION: ACIAD3395
name: imidazoleglycerol-phosphate dehydratase
fast: false
reactant: 614149
type: Reaction
reversible: false

578236
stoichiometry: 1.0
species: M TRIACYLGLYCEROL LBRACKET C RBRACKET
type: SpeciesReference

R AMIDASE DASH RXN
fast: false
is: AMIDASE-RXN
notes: GENE_ASSOCIATION: ACIAD1618
reactant: 581376
type: Reaction
reversible: false
reactant: 581364
product: 581388
name: propanamide amidase
product: 581400

612436
stoichiometry: 1.0
species: M 3 DASH KETOBUTYRATE LBRACKET E RBRACKET
type: SpeciesReference

612796
stoichiometry: 1.0
species: M CPD DASH 335 LBRACKET C RBRACKET
type: SpeciesReference

579067
reactant: 579079
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of coniferyl aldehyde
type: Reaction

581990
stoichiometry: 1.0
species: M N DASH SUCCINYL DASH 2 DASH AMINO DASH 6 DASH KETOPIMELATE LBRACKET C RBRACKET
type: SpeciesReference

578176
stoichiometry: 1.0
species: M GLYCOLALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

596827
stoichiometry: 1.0
species: M DIHYDROXY DASH ACETONE DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

608265
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

570703
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ACYL-ACP_LPS
type: Species

594068
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET
type: SpeciesReference

M CPD0 DASH 181 LBRACKET C RBRACKET
boundary condition: false
type: Species
is: CPD0-181
in compartment: 570138
constant: false
has only substance units: false
is: 5caiz
initial concentration: NaN
initial amount: NaN
name: n5-carboxyaminoimidazole ribonucleotide

R HYDROXYBENZALDEHYDE DASH OXIDATION DASH NAD DASH RXN
fast: false
reversible: true
name: hydroxybenzaldehyde dehydrogenase
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1430 or ACIAD1725
product: 575298
is: HYDROXYBENZALDEHYDE-OXIDATION-NAD-RXN
reactant: 575274
product: 575286
reactant: 575250
reactant: 575262

594140
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

613097
stoichiometry: 0.1
species: M C16 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

584665
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

600079
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

583135
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

615993
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

582411
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

618056
stoichiometry: 1.0
species: 570787
type: SpeciesReference

570354
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: PL_W
type: Species

573109
stoichiometry: 1.0
species: M 5 DASH KETO DASH 4 DASH DEOXY DASH D DASH GLUCARATE LBRACKET C RBRACKET
type: SpeciesReference

611773
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

M GLUTACONYL DASH COA LBRACKET C RBRACKET
is: GLUTACONYL-COA
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: glutaconyl-coa
type: Species

579885
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

603633
stoichiometry: 1.0
species: M CHARGED DASH SER DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

595671
reactant: 595684
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of salicylate
type: Reaction

614972
stoichiometry: 1.0
species: M DADP LBRACKET C RBRACKET
type: SpeciesReference

M GLN LBRACKET E RBRACKET
constant: false
has only substance units: false
is: C00064
initial amount: NaN
is: GLN
in compartment: 570126
name: l-glutamine
is: gln-L
boundary condition: false
initial concentration: NaN
type: Species

606546
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

593162
stoichiometry: 1.0
species: M DEOXYXYLULOSE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

589187
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

589223
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

589932
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

570655
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans,trans-hex-2,4-enoyl-coa
type: Species

610472
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

598465
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M PHOSPHORIBULOSYL DASH FORMIMINO DASH AICAR DASH P LBRACKET C RBRACKET
initial amount: NaN
type: Species
has only substance units: false
in compartment: 570138
constant: false
is: PHOSPHORIBULOSYL-FORMIMINO-AICAR-P
is: prlp
name: phosphoribulosylformimino-aicar-p
initial concentration: NaN
is: C04916
boundary condition: false

574276
stoichiometry: 1.0
species: M L DASH ORNITHINE LBRACKET C RBRACKET
type: SpeciesReference

601549
stoichiometry: 1.0
species: M HOMO DASH CYS LBRACKET C RBRACKET
type: SpeciesReference

599598
stoichiometry: 1.0
species: M OCTAPRENYL DASH METHOXY DASH BENZOQUINONE LBRACKET C RBRACKET
type: SpeciesReference

585544
stoichiometry: 3.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

607410
stoichiometry: 0.07
species: M FMN LBRACKET C RBRACKET
type: SpeciesReference

574566
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

571882
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

606257
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

570499
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: NICOTINAMIDE_NUCLEOTIDE
type: Species

R TRANS DASH RXNIM DASH 5736 DASH BIS
reversible: false
fast: false
product: 618224
reactant: 618200
product: 618236
reactant: 618212
notes: GENE_ASSOCIATION: ACIAD2541
is: TRANS-RXNIM-5736
type: Reaction
name: transport of purine [extraorganism;cytosol](secondary symport)

586362
stoichiometry: 1.0
species: M C14 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

616767
stoichiometry: 1.0
species: 570799
type: SpeciesReference

612689
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

M 5 DASH PHOSPHORIBOSYL DASH N DASH FORMYLGLYCINEAMIDINE LBRACKET C RBRACKET
constant: false
is: 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE
name: 5-phosphoribosyl-n-formylglycineamidine
is: C04640
initial amount: NaN
in compartment: 570138
is: fpram
boundary condition: false
has only substance units: false
type: Species
initial concentration: NaN

605402
stoichiometry: 1.0
species: M FORMALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

M C12 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
initial concentration: NaN
name: trans-dodec-2-enoyl-acp
is: tddec2eACP
constant: false
boundary condition: false
has only substance units: false
in compartment: 570138
initial amount: NaN
type: Species
is: C05758

608579
stoichiometry: 4.2
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

593849
stoichiometry: 1.0
species: M D DASH CYSTEINE LBRACKET C RBRACKET
type: SpeciesReference

M C6 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: Species
is: C05271
in compartment: 570138
is: hx2coa
has only substance units: false
boundary condition: false
constant: false
initial amount: NaN
name: trans-hex-2-enoyl-coa
initial concentration: NaN

R SUCCGLUALDDEHYD DASH RXN
product: 606401
reactant: 606353
is: SUCCGLUALDDEHYD-RXN
is: SGSAD
reversible: true
reactant: 606365
reactant: 606341
name: succinylglutamic semialdehyde dehydrogenase
notes: GENE_ASSOCIATION: ACIAD1287
type: Reaction
product: 606389
fast: false
product: 606377

608906
stoichiometry: 1.0
species: M GTP LBRACKET C RBRACKET
type: SpeciesReference

584269
stoichiometry: 1.0
species: M C10 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

599730
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

R IMP DASH DEHYDROG DASH RXN
reactant: 595466
is: IMPD
reactant: 595490
name: imp dehydrogenase
fast: false
type: Reaction
reactant: 595478
product: 595502
is: IMP-DEHYDROG-RXN
notes: GENE_ASSOCIATION: ACIAD3503
product: 595514
reversible: true

597842
stoichiometry: 1.0
species: 571088
type: SpeciesReference

582194
stoichiometry: 1.0
species: M D DASH SERINE LBRACKET E RBRACKET
type: SpeciesReference

R PYRROLINECARBDEHYDROG DASH RXN
reversible: false
reactant: 591910
reactant: 591922
is: PYRROLINECARBDEHYDROG-RXN
is: P5CD
reactant: 591898
product: 591934
notes: GENE_ASSOCIATION: ACIAD1646
product: 591946
fast: false
type: Reaction
name: 1-pyrroline-5-carboxylate dehydrogenase

597995
product: 598019
reactant: 598007
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of h2o [extraorganism;cytosol](passive)
type: Reaction

594551
stoichiometry: 1.0
species: M OX DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
type: SpeciesReference

586050
stoichiometry: 1.0
species: M ADENOSINE LBRACKET C RBRACKET
type: SpeciesReference

613219
stoichiometry: 1.0
species: M L DASH ORNITHINE LBRACKET E RBRACKET
type: SpeciesReference

598043
stoichiometry: 1.0
species: M INOSINE LBRACKET E RBRACKET
type: SpeciesReference

572327
stoichiometry: 1.0
species: M RIBOSE LBRACKET C RBRACKET
type: SpeciesReference

572182
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXNIM DASH 5771
reactant: 585713
product: 585749
product: 585761
reactant: 585725
notes: GENE_ASSOCIATION: ACIAD1914 and ACIAD1463 and ACIAD1465 and ACIAD1464
product: 585773
is: TRANS-RXNIM-5771
reversible: false
reactant: 585737
fast: false
type: Reaction
name: transport of no3- [extraorganism;cytosol](primary active atp)

588670
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

587312
stoichiometry: 1.0
species: M L DASH LACTATE LBRACKET C RBRACKET
type: SpeciesReference

589824
stoichiometry: 1.0
species: M GERANYL DASH PP LBRACKET C RBRACKET
type: SpeciesReference

612074
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

M GLN DASH TRNAS LBRACKET C RBRACKET
is: C01640
has only substance units: false
in compartment: 570138
initial amount: NaN
is: GLN-TRNAS
constant: false
type: Species
boundary condition: false
is: trnagln
initial concentration: NaN
name: glutamine trna

596261
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

602118
stoichiometry: 1.0
species: M SULFATE LBRACKET C RBRACKET
type: SpeciesReference

R FOLYLPOLYGLUTAMATESYNTH DASH RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD0644
product: 585990
product: 585978
reactant: 585941
is: FOLYLPOLYGLUTAMATESYNTH-RXN
reactant: 585966
type: Reaction
product: 586002
reactant: 585953
name: folylpolyglutamate synthase
reversible: false

R 4 DASH HYDROXYBENZOATE DASH 3 DASH MONOOXYGENASE DASH RXN
reactant: 611785
type: Reaction
fast: false
product: 611809
is: 4-HYDROXYBENZOATE-3-MONOOXYGENASE-RXN
name: 4-hydroxybenzoate 3-monooxygenase
reactant: 611797
reactant: 611773
reversible: false
product: 611821
notes: GENE_ASSOCIATION: ACIAD1719
product: 611833

609884
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R C14 COLON 0 DASH 3OXOCOA DASH THIOLASE DASH RXN
name: 3oxoacyl-coa thiolase (c14:0)
type: Reaction
reactant: 575010
reactant: 574998
product: 575034
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
fast: false
is: KETOACYLCOATHIOL-RXN
product: 575022
reversible: true
is: KAT6

594212
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: SpeciesReference

592994
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

616053
stoichiometry: 1.0
species: M L DASH CITRULLINE LBRACKET C RBRACKET
type: SpeciesReference

615032
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

592282
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

606101
stoichiometry: 1.0
species: M FORMALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

M ARABINOSE DASH 5P LBRACKET C RBRACKET
initial amount: NaN
constant: false
is: C01112
in compartment: 570138
boundary condition: false
has only substance units: false
name: d-arabinose 5-phosphate
is: ARABINOSE-5P
is: ara5p
type: Species
initial concentration: NaN

597236
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

601936
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 650 LBRACKET C RBRACKET
has only substance units: false
in compartment: 570138
type: Species
is: CPD-650
constant: false
name: 3-hydroxybutyryl-coa
initial concentration: NaN
initial amount: NaN
is: 3hbcoa
boundary condition: false
is: C01144

595829
stoichiometry: 1.0
species: M BENZOATE LBRACKET P RBRACKET
type: SpeciesReference

602695
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

R ANTHRANSYN DASH RXN
is: ANS
product: 581556
notes: GENE_ASSOCIATION: ACIAD0297 and ACIAD2461
reactant: 581544
product: 581568
reversible: true
is: ANTHRANSYN-RXN
fast: false
reactant: 581532
product: 581580
type: Reaction
name: anthranilate synthase

585809
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

610292
stoichiometry: 5.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

M 2K DASH 4CH3 DASH PENTANOATE LBRACKET C RBRACKET
type: Species
in compartment: 570138
initial concentration: NaN
has only substance units: false
is: 4mop
is: 2K-4CH3-PENTANOATE
constant: false
boundary condition: false
is: C00233
name: 2-keto-4-methyl-pentanoate
initial amount: NaN

581737
stoichiometry: 1.0
species: M PYRUVATE LBRACKET E RBRACKET
type: SpeciesReference

599502
stoichiometry: 0.445
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET
type: SpeciesReference

581508
stoichiometry: 1.0
species: M OH DASH PYR LBRACKET C RBRACKET
type: SpeciesReference

594876
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH ATP LBRACKET C RBRACKET
type: SpeciesReference

602479
stoichiometry: 1.0
species: M UNDECAPRENYL DASH DIPHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

613895
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

M DEOXYCYTIDINE LBRACKET C RBRACKET
initial concentration: NaN
has only substance units: false
initial amount: NaN
name: deoxycytidine
boundary condition: false
in compartment: 570138
is: C00881
is: dcyt
constant: false
is: DEOXYCYTIDINE
type: Species

613955
reactant: 613967
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of no3-
type: Reaction

587889
stoichiometry: 1.0
species: M CPD DASH 6501 LBRACKET C RBRACKET
type: SpeciesReference

578453
stoichiometry: 1.0
species: M 3 DASH OHLAUROYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

M L DASH 1 DASH PHOSPHATIDYL DASH GLYCEROL DASH P LBRACKET C RBRACKET
type: Species
is: C03892
initial concentration: NaN
is: L-1-PHOSPHATIDYL-GLYCEROL-P
constant: false
boundary condition: false
in compartment: 570138
has only substance units: false
name: generic l-1-phosphatidyl-glycerol-phosphate
initial amount: NaN

R TRANS DASH RXNIM DASH 5773
is: TRANS-RXNIM-5773
notes: GENE_ASSOCIATION: ACIAD1911
reversible: true
reactant: 585845
product: 585857
product: 585869
type: Reaction
fast: false
reactant: 585833
name: transport of no3- [extraorganism;cytosol](secondary symport)

M C6 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
is: OH-HEXANOYL-COA
in compartment: 570138
initial amount: NaN
is: 3hhcoa
name: 3-hydroxyhexanoyl-coa
is: C05268
constant: false
boundary condition: false
type: Species
has only substance units: false
initial concentration: NaN

R THYMIDYLATESYN DASH RXN
type: Reaction
reactant: 616186
fast: false
reactant: 616198
reversible: true
notes: GENE_ASSOCIATION: ACIAD0515
name: thymidylate synthase
is: TMDS
product: 616222
is: THYMIDYLATESYN-RXN
product: 616210

R PHOSPHATIDATE DASH PHOSPHATASE DASH RXN
notes: GENE_ASSOCIATION:
type: Reaction
fast: false
reversible: false
name: phosphatidate phosphatase
is: PHOSPHATIDATE-PHOSPHATASE-RXN
reactant: 583921
product: 583934
reactant: 583908
product: 583947

604476
stoichiometry: 1.0
species: M CHARGED DASH LEU DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

577623
stoichiometry: 1.0
species: M URACIL LBRACKET E RBRACKET
type: SpeciesReference

574493
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

595382
stoichiometry: 1.0
species: M DCMP LBRACKET C RBRACKET
type: SpeciesReference

576514
stoichiometry: 1.0
species: 570703
type: SpeciesReference

602045
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

610040
reactant: 610052
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of ethanol
type: Reaction

573037
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

575286
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

603585
stoichiometry: 1.0
species: M SER DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

M 5 COMMA 10 DASH METHENYL DASH THF LBRACKET C RBRACKET
initial amount: NaN
has only substance units: false
is: 5,10-methenyl-thf
constant: false
is: C00445
type: Species
name: 5,10-methenyl-thf
in compartment: 570138
initial concentration: NaN
is: methf
boundary condition: false

591163
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

611448
stoichiometry: 1.0
species: M DIHYDROPTERIN DASH CH2OH DASH PP LBRACKET C RBRACKET
type: SpeciesReference

599286
stoichiometry: 1.0
species: M PI LBRACKET E RBRACKET
type: SpeciesReference

608157
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

604668
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

605523
stoichiometry: 1.0
species: M CPD DASH 1302 LBRACKET C RBRACKET
type: SpeciesReference

571172
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans-3-hydroxyhex-4-enoyl-coa
type: Species

R LEUCINE DASH DASH TRNA DASH LIGASE DASH RXN
reactant: 604440
type: Reaction
product: 604476
reversible: false
name: leucine--trna ligase
reactant: 604428
product: 604464
is: LEUTRS
reactant: 604416
fast: false
product: 604452
is: LEUCINE--TRNA-LIGASE-RXN
notes: GENE_ASSOCIATION: ACIAD3106

584725
stoichiometry: 1.0
species: M TREHALOSE DASH 6P LBRACKET C RBRACKET
type: SpeciesReference

617489
stoichiometry: 1.0
species: M THR LBRACKET C RBRACKET
type: SpeciesReference

606329
stoichiometry: 1.0
species: M ACETONE LBRACKET C RBRACKET
type: SpeciesReference

578862
stoichiometry: 1.0
species: M UDP DASH N DASH ACETYL DASH D DASH GLUCOSAMINE LBRACKET C RBRACKET
type: SpeciesReference

M GDP DASH MANNOSE LBRACKET C RBRACKET
is: C00096
initial concentration: NaN
is: GDP-MANNOSE
boundary condition: false
has only substance units: false
name: gdp-mannose
initial amount: NaN
constant: false
type: Species
is: gdpmann
in compartment: 570138

604740
stoichiometry: 1.0
species: M BENZOATE LBRACKET C RBRACKET
type: SpeciesReference

606594
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

609956
stoichiometry: 1.0
species: M 3 DASH HYDROXY DASH ISOBUTYRATE LBRACKET C RBRACKET
type: SpeciesReference

598585
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

610774
stoichiometry: 1.0
species: M SHIKIMATE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

583291
stoichiometry: 1.0
species: M DI DASH H DASH OROTATE LBRACKET C RBRACKET
type: SpeciesReference

618296
stoichiometry: 1.0
species: 570679
type: SpeciesReference

587421
stoichiometry: 1.0
species: M URACIL LBRACKET C RBRACKET
type: SpeciesReference

572807
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

576599
stoichiometry: 1.0
species: M GLC DASH D DASH LACTONE LBRACKET P RBRACKET
type: SpeciesReference

585917
stoichiometry: 1.0
species: M QUINATE LBRACKET E RBRACKET
type: SpeciesReference

599610
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

571738
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

611857
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

602587
stoichiometry: 1.0
species: M NIACINAMIDE LBRACKET C RBRACKET
type: SpeciesReference

596671
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

597777
stoichiometry: 1.0
species: M 4 DASH PHOSPHOPANTOTHENOYLCYSTEINE LBRACKET C RBRACKET
type: SpeciesReference

601828
stoichiometry: 1.0
species: M CIS DASH ACONITATE LBRACKET C RBRACKET
type: SpeciesReference

R GLYCINE DASH DASH TRNA DASH LIGASE DASH RXN
product: 592390
fast: false
product: 592414
name: glycine--trna ligase
reactant: 592366
is: GLYTRS
is: GLYCINE--TRNA-LIGASE-RXN
reactant: 592354
notes: GENE_ASSOCIATION: ACIAD3268 and ACIAD3269
reversible: false
product: 592402
type: Reaction
reactant: 592378

R DIACYLGLYCEROL DASH O DASH ACYLTRANSFERASE DASH RXN
reactant: 578224
fast: false
notes: GENE_ASSOCIATION: ACIAD0832
type: Reaction
reversible: false
name: diacylglycerol o-acyltransferase
is: DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN
product: 578236
reactant: 578212
product: 578248

582630
stoichiometry: 1.0
species: M LYS LBRACKET C RBRACKET
type: SpeciesReference

572291
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

571064
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: NICOTINATE_NUCLEOTIDE
type: Species

M CPD DASH 302 LBRACKET C RBRACKET
is: CPD-302
in compartment: 570138
is: asp-D
constant: false
has only substance units: false
type: Species
boundary condition: false
initial concentration: NaN
initial amount: NaN
is: C00402
name: d-aspartate

M D DASH LACTATE LBRACKET E RBRACKET
is: D-LACTATE
boundary condition: false
name: d-lactate
constant: false
is: lac-D
has only substance units: false
in compartment: 570126
initial amount: NaN
type: Species
initial concentration: NaN
is: C00256

594442
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

604896
stoichiometry: 1.0
species: M GUANOSINE LBRACKET E RBRACKET
type: SpeciesReference

599358
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 335 LBRACKET E RBRACKET
name: (r)-3-hydroxybutanoate
is: bhb
is: CPD-335
constant: false
type: Species
has only substance units: false
initial concentration: NaN
initial amount: NaN
is: C01089
boundary condition: false
in compartment: 570126

615080
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

572218
stoichiometry: 1.0
species: M COUMARATE LBRACKET E RBRACKET
type: SpeciesReference

608049
stoichiometry: 1.0
species: M SULFATE LBRACKET C RBRACKET
type: SpeciesReference

M INOSINE LBRACKET E RBRACKET
is: C00294
initial amount: NaN
has only substance units: false
initial concentration: NaN
boundary condition: false
is: ins
in compartment: 570126
name: inosine
is: INOSINE
constant: false
type: Species

R AICARTRANSFORM DASH RXN
notes: GENE_ASSOCIATION: ACIAD2447
reactant: 588742
is: AICARTRANSFORM-RXN
reversible: false
product: 588766
is: AICART
product: 588778
reactant: 588754
type: Reaction
name: phosphoribosylaminoimidazolecarboxamide formyltransferase
fast: false

596899
stoichiometry: 1.0
species: M CIT LBRACKET C RBRACKET
type: SpeciesReference

R PYRROLINECARBREDUCT DASH RXN
product: 572519
product: 572531
fast: false
is: PYRROLINECARBREDUCT-RXN
reactant: 572507
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3032
name: pyrroline-5-carboxylate reductase
is: P5CR
reversible: false
reactant: 572495

M CHARGED DASH ARG DASH TRNAS LBRACKET C RBRACKET
in compartment: 570138
name: charged arginine trna
initial amount: NaN
has only substance units: false
is: argtrna
constant: false
boundary condition: false
is: CHARGED-ARG-TRNAS
type: Species
initial concentration: NaN
is: C02163

610545
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

581846
stoichiometry: 1.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET
type: SpeciesReference

R C14 COLON 1 LPAREN C5 RPAREN DASH 3OXOACP DASH REDUCTASE DASH RXN
product: 588166
reactant: 588154
fast: false
name: 3oxoacyl-acp reductase (c14:1(c5))
reversible: false
is: 3-OXOACYL-ACP-REDUCT-RXN
type: Reaction
product: 588178
reactant: 588142
notes: GENE_ASSOCIATION: ACIAD0871

M RIBOSE DASH 5P LBRACKET C RBRACKET
constant: false
type: Species
boundary condition: false
has only substance units: false
name: ribose-5-phosphate
initial concentration: NaN
is: r5p
is: C00117
is: RIBOSE-5P
initial amount: NaN
in compartment: 570138

572747
stoichiometry: 1.0
species: M C6 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

R C16 COLON 1 LPAREN C7 RPAREN DASH COA DASH DEHYDROGENASE DASH RXN
name: acyl-coa dehydrogenase (c16:1(c7))
reversible: false
type: Reaction
reactant: 617381
fast: false
product: 617417
reactant: 617393
product: 617405
is: ACYLCOADEHYDROG-RXN
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566

597127
stoichiometry: 2.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R 4 PERIOD 2 PERIOD 1 PERIOD 101 DASH RXN
product: 590608
reactant: 590596
reactant: 590584
notes: GENE_ASSOCIATION: ACIAD1726
is: 4.2.1.101-RXN
fast: false
reversible: true
name: trans-feruloyl-coa hydratase
type: Reaction

583495
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

594321
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

616246
stoichiometry: 1.0
species: M GLYCEROL DASH 3P LBRACKET C RBRACKET
type: SpeciesReference

579777
stoichiometry: 1.0
species: M 3 DASH OXOADIPATE DASH ENOL DASH LACTONE LBRACKET C RBRACKET
type: SpeciesReference

597907
stoichiometry: 1.0
species: M PHENYL DASH PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

R C18 COLON 1 LPAREN C9 RPAREN DASH COA DASH THIOLASE DASH RXN
is: THIOESTER-RXN
product: 590524
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
product: 590512
reversible: false
name: acyl-coa thiolase (c18:1(c9))
fast: false
reactant: 590500
reactant: 590488

M CO DASH A LBRACKET C RBRACKET
initial concentration: NaN
in compartment: 570138
initial amount: NaN
is: CO-A
constant: false
boundary condition: false
is: coa
is: C00010
name: coenzyme a
has only substance units: false
type: Species

610690
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

613700
reactant: 613712
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: exchange flux of na+
type: Reaction

599213
stoichiometry: 1.0
species: M C18 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: SpeciesReference

592572
stoichiometry: 2.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

573193
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R ADENYL DASH KIN DASH RXN
is: ADENYL-KIN-RXN
reactant: 596442
notes: GENE_ASSOCIATION: ACIAD1105
reversible: true
product: 596466
is: ADK1
type: Reaction
reactant: 596454
fast: false
name: adenylate kinase

R R222 DASH RXN
product: 597200
notes: GENE_ASSOCIATION: ACIAD2018 or ACIAD2542
fast: false
reactant: 597151
type: Reaction
product: 597187
reversible: true
reactant: 597175
is: R222-RXN
reactant: 597163
name: octanal dehydrogenase

578970
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

598695
stoichiometry: 1.0
species: M ACETALD LBRACKET C RBRACKET
type: SpeciesReference

R C14 COLON 0 DASH ACP DASH HYDROLASE DASH RXN
fast: false
notes: GENE_ASSOCIATION:
is: FA140ACPHi
reactant: 582254
reactant: 582266
product: 582278
type: Reaction
name: acyl-acp hydrolase (c14:0)
reversible: false
product: 582290

R DUMP DASH NUCLEOTIDASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227
product: 599922
reversible: false
product: 599934
fast: false
type: Reaction
is: RXNIM-6193
reactant: 599898
is: NTD1
reactant: 599910
name: dump nucleotidase

606486
stoichiometry: 1.0
species: M MET LBRACKET C RBRACKET
type: SpeciesReference

614003
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: SpeciesReference

603790
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

597574
stoichiometry: 1.0
species: M L DASH LACTATE LBRACKET C RBRACKET
type: SpeciesReference

617320
stoichiometry: 1.0
species: M MET LBRACKET E RBRACKET
type: SpeciesReference

597622
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH AMP LBRACKET C RBRACKET
type: SpeciesReference

605631
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

578754
stoichiometry: 1.0
species: M BISOHMYR DASH GLUCOSAMINYL DASH 1P LBRACKET C RBRACKET
type: SpeciesReference

M NADP LBRACKET C RBRACKET
name: nadp
has only substance units: false
type: Species
is: NADP
boundary condition: false
is: nadp
in compartment: 570138
constant: false
initial amount: NaN
initial concentration: NaN
is: C00006

604367
reactant: 604379
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: unbalance flux of s-adenosyl-4-methylthio-2-oxobutanoate
type: Reaction

591055
stoichiometry: 1.0
species: M FE PLUS 2 LBRACKET C RBRACKET
type: SpeciesReference

R GLYOHMETRANS DASH RXN
notes: GENE_ASSOCIATION: ACIAD2255
product: 578850
reversible: true
reactant: 578814
product: 578838
is: GHMT2
fast: false
type: Reaction
reactant: 578826
name: glycine hydroxymethyltransferase
reactant: 578802
is: GLYOHMETRANS-RXN

613786
stoichiometry: 1.0
species: M VAL LBRACKET C RBRACKET
type: SpeciesReference

M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
initial concentration: NaN
type: Species
is: C00007
in compartment: 570138
is: OXYGEN-MOLECULE
has only substance units: false
initial amount: NaN
name: o2
is: o2
constant: false
boundary condition: false

609800
stoichiometry: 1.0
species: M FORMALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

602322
stoichiometry: 1.0
species: M OX DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
type: SpeciesReference

M TRANS DASH 23 DASH DEHYDROADIPYL DASH COA LBRACKET C RBRACKET
initial amount: NaN
has only substance units: false
is: C14144
initial concentration: NaN
in compartment: 570138
is: TRANS-23-DEHYDROADIPYL-COA
name: trans-2,3-dehydroadipyl-coa
constant: false
type: Species
boundary condition: false

R SUCC DASH FUM DASH OXRED DASH RXN
is: SUCC-FUM-OXRED-RXN
name: succinate dehydrogenase
reactant: 579283
reactant: 579296
fast: false
is: SUCDi
product: 579320
product: 579308
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2882 and ACIAD2881 and ACIAD2880 and ACIAD2879
reversible: true

575130
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET
type: SpeciesReference

M C10 COLON 0 LBRACKET C RBRACKET
constant: false
in compartment: 570138
type: Species
boundary condition: false
is: C01571
initial concentration: NaN
has only substance units: false
is: CPD-3617
initial amount: NaN
name: decanoate
is: dca

583087
stoichiometry: 1.0
species: M DCTP LBRACKET C RBRACKET
type: SpeciesReference

603200
stoichiometry: 1.0
species: M ACETALD LBRACKET C RBRACKET
type: SpeciesReference

617598
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R GLUCOSAMINE1PACETYL DASH RXN
notes: GENE_ASSOCIATION: ACIAD3575
type: Reaction
name: glucosamine-1-phosphate N-acetyltransferase
product: 586808
reactant: 586783
reversible: false
fast: false
reactant: 586795
is: G1PACT
is: GLUCOSAMINE1PACETYL-RXN
product: 586820

587288
stoichiometry: 1.0
species: M L DASH LACTATE LBRACKET E RBRACKET
type: SpeciesReference

M PRO DASH TRNAS LBRACKET C RBRACKET
has only substance units: false
in compartment: 570138
initial amount: NaN
initial concentration: NaN
is: C01649
constant: false
boundary condition: false
is: trnapro
name: proline trna
is: PRO-TRNAS
type: Species

M 3 DASH DEOXY DASH D DASH ARABINO DASH HEPTULOSONATE DASH 7 DASH P LBRACKET C RBRACKET
initial amount: NaN
is: 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P
type: Species
is: C04691
name: 3-deoxy-d-arabino-heptulosonate-7-phosphate
is: 2dda7p
boundary condition: false
constant: false
initial concentration: NaN
in compartment: 570138
has only substance units: false

613847
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

586422
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

611557
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

M HYPOXANTHINE LBRACKET C RBRACKET
has only substance units: false
constant: false
is: hxan
boundary condition: false
is: HYPOXANTHINE
initial concentration: NaN
is: C00262
in compartment: 570138
name: hypoxanthine
type: Species
initial amount: NaN

617658
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

M CROTONYL DASH COA LBRACKET C RBRACKET
has only substance units: false
is: C00877
is: b2coa
initial concentration: NaN
is: CROTONYL-COA
type: Species
constant: false
initial amount: NaN
in compartment: 570138
boundary condition: false
name: crotonyl-coa

607916
stoichiometry: 1.0
species: M DUTP LBRACKET C RBRACKET
type: SpeciesReference

R 2PGADEHYDRAT DASH RXN
notes: GENE_ASSOCIATION: ACIAD2001
fast: false
reversible: true
type: Reaction
is: ENO
product: 601694
name: phosphopyruvate hydratase
reactant: 601682
product: 601706
is: 2PGADEHYDRAT-RXN

604945
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET
type: SpeciesReference

587733
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

584449
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

R GLYOXI DASH RXN
reversible: true
product: 575565
notes: GENE_ASSOCIATION: ACIAD2213
reactant: 575541
is: GLYOXI-RXN
type: Reaction
name: lactoylglutathione lyase
is: LGTHL
fast: false
reactant: 575553

609328
stoichiometry: 1.0
species: M HOMO DASH SER LBRACKET C RBRACKET
type: SpeciesReference

M C18 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
is: 3ooctdACP
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-oxooctadecanoyl-acp
type: Species

603284
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET
type: SpeciesReference

570426
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-oxotetradec-4-enoyl-acp
type: Species

579175
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

576731
stoichiometry: 1.0
species: M CPD DASH 173 LBRACKET C RBRACKET
type: SpeciesReference

597007
stoichiometry: 1.0
species: M C16 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

616971
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

583351
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

M UDP DASH AAGM DASH DIAMINOHEPTANEDIOATE LBRACKET C RBRACKET
is: UDP-AAGM-DIAMINOHEPTANEDIOATE
boundary condition: false
type: Species
name: udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminoheptanedioate
constant: false
initial amount: NaN
is: ugmd
in compartment: 570138
is: C04877
has only substance units: false
initial concentration: NaN

601017
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH CARBOXY DASH AMINOIMIDAZOLE LBRACKET C RBRACKET
type: SpeciesReference

M ASN LBRACKET C RBRACKET
name: l-asparagine
has only substance units: false
initial amount: NaN
type: Species
constant: false
boundary condition: false
in compartment: 570138
is: C00152
initial concentration: NaN
is: asn-L
is: ASN

593668
stoichiometry: 1.0
species: M ERYTHRONATE DASH 4P LBRACKET C RBRACKET
type: SpeciesReference

570811
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 9-carboxy-3-oxononanoyl-coa
type: Species

609051
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

581159
stoichiometry: 1.0
species: 570775
type: SpeciesReference

R RXN0 DASH 311
notes: GENE_ASSOCIATION: ACIAD2755
product: 588935
reactant: 588923
reactant: 588911
fast: false
reversible: true
is: MICITD
name: methyl-cis-aconitic acid hydratase
type: Reaction
is: RXN0-311

M GUANINE LBRACKET C RBRACKET
in compartment: 570138
initial amount: NaN
initial concentration: NaN
constant: false
name: guanine
is: C00242
is: GUANINE
boundary condition: false
has only substance units: false
type: Species
is: gua

R C6 COLON 0 DASH COA DASH DEHYDROGENASE DASH RXN
is: ACOAD2f
reactant: 601451
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566
product: 601477
type: Reaction
reversible: false
is: ACYLCOADEHYDROG-RXN
name: acyl-coa dehydrogenase (c6:0)
fast: false
product: 601489
reactant: 601464

M SHIKIMATE LBRACKET C RBRACKET
boundary condition: false
in compartment: 570138
initial amount: NaN
constant: false
type: Species
has only substance units: false
name: shikimate
is: SHIKIMATE
is: skm
is: C00493
initial concentration: NaN

R ACETOACETYL DASH COA DASH TRANSFER DASH RXN
product: 572086
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2513 and ACIAD2514
is: ACETOACETYL-COA-TRANSFER-RXN
product: 572074
reactant: 572062
reactant: 572050
is: ACACCT
name: acetoacetyl-coa transferase
fast: false
reversible: true

R C14 COLON 1 LPAREN C5 RPAREN DASH 2ENOYLACP DASH REDUCTASE DASH RXN
reactant: 601586
notes: GENE_ASSOCIATION: ACIAD3116
type: Reaction
fast: false
is: ENOYL-ACP-REDUCT-NADH-RXN
product: 601622
reversible: false
reactant: 601598
product: 601610
name: 2enoyl-acp reductase (c14:1(c5))

581906
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M C14 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
has only substance units: false
name: 3-oxotetradecanoyl-acp
in compartment: 570138
is: C05759
boundary condition: false
initial concentration: NaN
initial amount: NaN
constant: false
type: Species
is: 3omrsACP

606654
stoichiometry: 1.0
species: M CHOLINE LBRACKET E RBRACKET
type: SpeciesReference

R NADH DASH DEHYDROGENASE DASH RXN
is: NADH5
is: NADH-DEHYDROGENASE-RXN
notes: GENE_ASSOCIATION: ACIAD3633
reactant: 616935
fast: false
reactant: 616923
product: 616959
type: Reaction
reversible: false
product: 616947
reactant: 616911
name: nadh dehydrogenase

604090
reactant: 604102
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of fructose
type: Reaction

589307
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

612327
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET
type: SpeciesReference

616815
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

589031
stoichiometry: 1.0
species: M GLC LBRACKET E RBRACKET
type: SpeciesReference

594984
stoichiometry: 1.0
species: M PRA LBRACKET C RBRACKET
type: SpeciesReference

593054
stoichiometry: 1.0
species: M TOLUENE LBRACKET C RBRACKET
type: SpeciesReference

615464
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

595781
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

572543
stoichiometry: 1.0
species: M CPD DASH 1091 LBRACKET C RBRACKET
type: SpeciesReference

614087
stoichiometry: 1.0
species: M WATER LBRACKET E RBRACKET
type: SpeciesReference

612604
stoichiometry: 1.0
species: M OX DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
type: SpeciesReference

573217
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

581256
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

591391
stoichiometry: 0.315
species: 570294
type: SpeciesReference

601658
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET
type: SpeciesReference

595937
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

R DIHYDROFOLATEREDUCT DASH RXN
product: 593463
fast: false
reversible: true
product: 593451
is: DIHYDROFOLATEREDUCT-RXN
name: dihydrofolate reductase
type: Reaction
reactant: 593439
notes: GENE_ASSOCIATION: ACIAD0514
reactant: 593427
is: DHFR

598356
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M L DASH ASPARTATE LBRACKET C RBRACKET
initial amount: NaN
constant: false
boundary condition: false
is: L-ASPARTATE
has only substance units: false
initial concentration: NaN
type: Species
in compartment: 570138
is: asp-L
name: l-aspartate
is: C00049

607604
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXNIM DASH 5855
type: Reaction
fast: false
name: transport of l-aspartate [extraorganism;cytosol](secondary symport)
reactant: 582110
is: ALAt4pp
product: 582146
product: 582134
reversible: false
reactant: 582122
is: TRANS-RXNIM-5855
notes: GENE_ASSOCIATION: ACIAD0481

601718
stoichiometry: 1.0
species: M CPDIM DASH 6097 LBRACKET C RBRACKET
type: SpeciesReference

M OH DASH PYR LBRACKET C RBRACKET
is: hpyr
name: hydroxypyruvate
is: OH-PYR
type: Species
initial amount: NaN
in compartment: 570138
has only substance units: false
boundary condition: false
initial concentration: NaN
is: C00168
constant: false

R ATPPHOSPHORIBOSYLTRANS DASH RXN
reversible: true
product: 594888
fast: false
is: ATPPHOSPHORIBOSYLTRANS-RXN
name: atp phosphoribosyltransferase
type: Reaction
product: 594876
is: ATPPRT
reactant: 594852
notes: GENE_ASSOCIATION: ACIAD0661 and ACIAD1257
reactant: 594864

591439
reactant: 591451
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of purine
type: Reaction

578020
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R 6 PERIOD 2 PERIOD 1 PERIOD 34 DASH RXN
reactant: 616101
product: 616126
reversible: true
product: 616138
notes: GENE_ASSOCIATION: ACIAD1724
is: 6.2.1.34-RXN
reactant: 616113
reactant: 616089
name: trans-feruloyl-coa synthetase
product: 616150
fast: false
type: Reaction

572687
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

570138
constant: true
size: NaN
spatial dimensions: 3.0
name: cytoplasm
type: Compartment

http://identifiers.org/biomodels.db/MODEL1949107276#R_C8_COLON_0_DASH_CARBOXY3OXOCOA_DASH_THIOLASE_DASH_RXN
fast: false
reactant: 576803
reactant: 576815
is: RXNIM-6203
notes: GENE_ASSOCIATION: ACIAD1689
product: 576827
name: dicarboxylate 3oxoacyl-coa thiolase (c8:0)
product: 576839
type: Reaction
reversible: true

613387
stoichiometry: 1.0
species: M NITRITE LBRACKET C RBRACKET
type: SpeciesReference

574674
stoichiometry: 1.0
species: M DEOXYGUANOSINE LBRACKET C RBRACKET
type: SpeciesReference

605849
stoichiometry: 1.0
species: M BETAINE LBRACKET E RBRACKET
type: SpeciesReference

603850
stoichiometry: 1.0
species: M UDP DASH ACETYLMURAMOYL DASH ALA LBRACKET C RBRACKET
type: SpeciesReference

574192
stoichiometry: 1.0
species: M DEAMIDO DASH NAD LBRACKET C RBRACKET
type: SpeciesReference

571594
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

R KDO DASH 8PPHOSPHAT DASH RXN
is: KDO-8PPHOSPHAT-RXN
fast: false
reactant: 612725
notes: GENE_ASSOCIATION: ACIAD1483
product: 612748
name: 3-deoxy-manno-octulosonate-8-phosphatase
reactant: 612736
product: 612760
is: KDOPP
type: Reaction
reversible: false

R 1TRANSKETO DASH RXN
reversible: true
is: TKT1
notes: GENE_ASSOCIATION: ACIAD2035
type: Reaction
product: 577262
reactant: 577238
name: transketolase (ribose-5p)
reactant: 577250
fast: false
product: 577274
is: 1TRANSKETO-RXN

588562
stoichiometry: 1.0
species: M HYDROXYMETHYLBILANE LBRACKET C RBRACKET
type: SpeciesReference

588442
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

M C12 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
initial concentration: NaN
has only substance units: false
constant: false
is: C05756
type: Species
in compartment: 570138
boundary condition: false
initial amount: NaN
is: 3oddecACP
name: 3-oxododecanoyl-acp

R UDP DASH NACMURALGLDAPAALIG DASH RXN
product: 588526
reactant: 588514
product: 588550
product: 588538
reactant: 588490
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3364
reversible: false
name: udp-n-acetylmuramoylalanyl-d-glutamyl-2,6-diaminopimelate--d-alanyl- d-alanine ligase
reactant: 588502
is: UGMDDS
is: UDP-NACMURALGLDAPAALIG-RXN
fast: false

574120
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

585436
stoichiometry: 1.0
species: 570499
type: SpeciesReference

591970
stoichiometry: 1.0
species: M DIHYDROXY DASH ACETONE DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

589716
stoichiometry: 1.0
species: M 2 COMMA 3 DASH DIHYDRODIPICOLINATE LBRACKET C RBRACKET
type: SpeciesReference

M PYRIDOXINE DASH 5P LBRACKET C RBRACKET
initial concentration: NaN
is: PYRIDOXINE-5P
boundary condition: false
in compartment: 570138
initial amount: NaN
is: pdx5p
name: pyridoxine-5'-phosphate
is: C00627
constant: false
type: Species
has only substance units: false

M C10 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
initial concentration: NaN
is: C04619
type: Species
has only substance units: false
name: 3-hydroxydecanoyl-acp
is: BETA-HYDROXYDECANOYL-ACP
in compartment: 570138
initial amount: NaN
constant: false
is: 3hdecACP
boundary condition: false

570763
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans,cis-tetradec-2,4-enoyl-coa
type: Species

M ASPARTYL DASH TRNAASN LBRACKET C RBRACKET
type: Species
is: ASPARTYL-TRNAASN
name: l-aspartyl-trna(asn)
constant: false
is: C06113
in compartment: 570138
initial concentration: NaN
initial amount: NaN
boundary condition: false
has only substance units: false

584051
stoichiometry: 1.0
species: M CYTOSINE LBRACKET C RBRACKET
type: SpeciesReference

613446
stoichiometry: 1.0
species: M C10 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: SpeciesReference

608422
stoichiometry: 0.02
species: M CHARGED DASH PHE DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

R CYSTATHIONINE DASH BETA DASH LYASE DASH RXN
product: 605342
fast: false
reactant: 605306
type: Reaction
is: CYSTATHIONINE-BETA-LYASE-RXN
product: 605354
notes: GENE_ASSOCIATION: ACIAD3222
product: 605330
reactant: 605318
name: cystathionine beta-lyase
is: CYSTL
reversible: true

582521
stoichiometry: 1.0
species: M ETHANOL DASH AMINE LBRACKET E RBRACKET
type: SpeciesReference

611665
product: 611713
product: 611701
reactant: 611689
reactant: 611677
notes: GENE_ASSOCIATION: ACIAD2080 or ACIAD2087
fast: false
reversible: true
name: ALANINE-AMINOTRANSFERASE-RXN
type: Reaction

R PSERTRANSAM DASH RXN
type: Reaction
product: 575697
reactant: 575685
notes: GENE_ASSOCIATION: ACIAD2647
fast: false
name: phosphoserine aminotransferase
is: PSERT
product: 575709
reversible: true
reactant: 575673
is: PSERTRANSAM-RXN

604800
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

596623
stoichiometry: 1.0
species: M AMINO DASH HYDROXYMETHYL DASH METHYL DASH PYR DASH P LBRACKET C RBRACKET
type: SpeciesReference

575517
stoichiometry: 1.0
species: M UDP DASH N DASH ACETYL DASH D DASH GLUCOSAMINE LBRACKET C RBRACKET
type: SpeciesReference

M TAURINE LBRACKET C RBRACKET
boundary condition: false
type: Species
in compartment: 570138
is: TAURINE
name: taurine
is: taur
initial concentration: NaN
has only substance units: false
initial amount: NaN
constant: false
is: C00245

575853
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

599718
stoichiometry: 1.0
species: M PROPIONYL DASH P LBRACKET C RBRACKET
type: SpeciesReference

595236
stoichiometry: 1.0
species: M DELTA LPAREN 3 RPAREN DASH ISOPENTENYL DASH PP LBRACKET C RBRACKET
type: SpeciesReference

R MANNPISOM DASH RXN
product: 583327
reactant: 583315
notes: GENE_ASSOCIATION: ACIAD0086
is: MANNPISOM-RXN
is: MAN6PI
fast: false
reversible: true
name: mannose-6-phosphate isomerase
type: Reaction

584281
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

R INOSINE DASH NUCLEOSIDASE DASH RXN
fast: false
reactant: 572303
is: INOSINE-NUCLEOSIDASE-RXN
type: Reaction
product: 572339
name: inosine nucleosidase
reactant: 572315
notes: GENE_ASSOCIATION: ACIAD2386
product: 572327
reversible: false
is: INSH

612880
stoichiometry: 1.0
species: M 5 DASH PHOSPHORIBOSYL DASH 5 DASH AMINOIMIDAZOLE LBRACKET C RBRACKET
type: SpeciesReference

594418
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

614936
stoichiometry: 1.0
species: M RED DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
type: SpeciesReference

608942
stoichiometry: 1.0
species: M DIHYDRONEOPTERIN DASH P3 LBRACKET C RBRACKET
type: SpeciesReference

586965
stoichiometry: 0.717
species: M C16 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

584929
stoichiometry: 1.0
species: M PYRIDOXAMINE DASH 5P LBRACKET C RBRACKET
type: SpeciesReference

R 2 DASH OCTAPRENYLPHENOL DASH HYDROX DASH RXN
reactant: 573133
fast: false
is: 2-OCTAPRENYLPHENOL-HYDROX-RXN
is: OPHHX
name: 2-octaprenylphenol hydroxylase
product: 573157
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0382
reversible: false
reactant: 573145

608676
stoichiometry: 0.05
species: M LYS DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

M HISTIDINOL LBRACKET C RBRACKET
constant: false
is: C00860
in compartment: 570138
boundary condition: false
is: histd
initial concentration: NaN
initial amount: NaN
name: histidinol
has only substance units: false
is: HISTIDINOL
type: Species

595032
stoichiometry: 1.0
species: M C5 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

585641
stoichiometry: 0.717
species: M C16 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

597175
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

583447
stoichiometry: 1.0
species: M SUC LBRACKET E RBRACKET
type: SpeciesReference

610978
stoichiometry: 0.032
species: 571232
type: SpeciesReference

593947
reactant: 593959
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of betaine
type: Reaction

588983
stoichiometry: 1.0
species: M DI DASH CH3 DASH ALLYL DASH PPI LBRACKET C RBRACKET
type: SpeciesReference

576803
stoichiometry: 1.0
species: 570992
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1949107276#R_C10_COLON_0_DASH_CARBOXY3OXOCOA_DASH_THIOLASE_DASH_RXN
reactant: 612916
reversible: true
product: 612940
type: Reaction
name: dicarboxylate 3oxoacyl-coa thiolase (c10:0)
is: RXNIM-6203
product: 612929
fast: false
notes: GENE_ASSOCIATION: ACIAD1689
reactant: 612904

577298
stoichiometry: 1.0
species: M CYTOSINE LBRACKET E RBRACKET
type: SpeciesReference

602768
stoichiometry: 1.0
species: M L DASH ORNITHINE LBRACKET C RBRACKET
type: SpeciesReference

600848
stoichiometry: 1.0
species: M L DASH BETA DASH ASPARTYL DASH P LBRACKET C RBRACKET
type: SpeciesReference

587013
stoichiometry: 1.0
species: 570655
type: SpeciesReference

M 3 DASH ENOLPYRUVYL DASH SHIKIMATE DASH 5P LBRACKET C RBRACKET
is: C01269
type: Species
in compartment: 570138
has only substance units: false
initial amount: NaN
boundary condition: false
name: 5-enolpyruvyl-shikimate-3-phosphate
is: 3psme
constant: false
is: 3-ENOLPYRUVYL-SHIKIMATE-5P
initial concentration: NaN

R 2 DASH OCTAPRENYL DASH METHOXY DASH BENZOQ DASH METH DASH RXN
product: 580442
is: OMBZLM
product: 580454
reactant: 580418
name: 2-octaprenyl-6-methoxy-benzoquinol methylase
type: Reaction
is: 2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN
fast: false
reactant: 580430
reversible: false
notes: GENE_ASSOCIATION: ACIAD0384

571340
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET E RBRACKET
type: SpeciesReference

571786
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

587096
reactant: 587108
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-threonine
type: Reaction

M DEOXYINOSINE LBRACKET C RBRACKET
initial concentration: NaN
name: deoxyinosine
boundary condition: false
is: din
in compartment: 570138
has only substance units: false
constant: false
type: Species
is: C05512
is: DEOXYINOSINE
initial amount: NaN

580662
stoichiometry: 1.0
species: M THYMIDINE LBRACKET C RBRACKET
type: SpeciesReference

580006
stoichiometry: 1.0
species: M SO3 LBRACKET C RBRACKET
type: SpeciesReference

M PROPANAMIDE LBRACKET C RBRACKET
is: CPDIM-6119
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: propane amide
type: Species

R RXNIM DASH 6204
reversible: false
reactant: 601803
notes: GENE_ASSOCIATION: ACIAD1537 and ACIAD1536
product: 601828
type: Reaction
name: tricarballylate dehydrogenase
is: RXNIM-6204
fast: false
product: 601840
reactant: 601816

612266
stoichiometry: 1.0
species: M CPD DASH 110 LBRACKET C RBRACKET
type: SpeciesReference

607218
stoichiometry: 1.0
species: M L DASH HISTIDINOL DASH P LBRACKET C RBRACKET
type: SpeciesReference

612472
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

594104
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M CYTOSINE LBRACKET E RBRACKET
in compartment: 570126
is: csn
type: Species
constant: false
has only substance units: false
is: C00380
initial amount: NaN
boundary condition: false
name: cytosine
is: CYTOSINE
initial concentration: NaN

613170
stoichiometry: 0.149
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET
type: SpeciesReference

588827
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

605993
product: 606017
reactant: 606005
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of h2o [extraorganism;periplasm](passive)
type: Reaction

R UREIDOGLYCOLATE DASH HYDROLASE DASH RXN
is: UREIDOGLYCOLATE-HYDROLASE-RXN
product: 572567
notes: GENE_ASSOCIATION: ACIAD3542
product: 572579
reactant: 572555
reversible: false
name: ureidoglycolate hydrolase
product: 572591
is: UGLYCH
type: Reaction
fast: false
reactant: 572543

594080
stoichiometry: 1.0
species: M 5 DASH P DASH RIBOSYL DASH N DASH FORMYLGLYCINEAMIDE LBRACKET C RBRACKET
type: SpeciesReference

R TRIACYLGLYCEROL DASH LIPASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD3309 or ACIAD1121
name: triacylglycerol lipase
is: TRIACYLGLYCEROL-LIPASE-RXN
type: Reaction
product: 574722
reactant: 574686
product: 574710
reversible: false
reactant: 574698
fast: false

614876
stoichiometry: 1.0
species: M GLYCEROL LBRACKET E RBRACKET
type: SpeciesReference

608700
stoichiometry: 0.04
species: M GLN DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

571232
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: COFACTOR_W
type: Species

580554
stoichiometry: 0.052
species: M C16 COLON 0 DASH OH LBRACKET C RBRACKET
type: SpeciesReference

R RXNIM DASH 6205
is: RXNIM-6205
fast: false
product: 576189
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1428
reversible: false
reactant: 576153
name: benzylacetate esterase
reactant: 576165
product: 576177

606041
stoichiometry: 1.0
species: M 4 DASH HYDROXY DASH BENZYL DASH ALCOHOL LBRACKET E RBRACKET
type: SpeciesReference

573591
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

610328
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

598128
stoichiometry: 1.0
species: M C8 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M OROTIDINE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET
is: C01103
has only substance units: false
in compartment: 570138
type: Species
initial concentration: NaN
boundary condition: false
constant: false
is: orot5p
is: OROTIDINE-5-PHOSPHATE
name: orotidine-5'-phosphate
initial amount: NaN

578272
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

577575
stoichiometry: 1.0
species: 570944
type: SpeciesReference

M COUMARATE LBRACKET C RBRACKET
type: Species
is: C00811
has only substance units: false
constant: false
in compartment: 570138
is: COUMARATE
name: 4-coumarate
initial amount: NaN
boundary condition: false
initial concentration: NaN

611881
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

M 8 DASH AMINO DASH 7 DASH OXONONANOATE LBRACKET C RBRACKET
is: C01092
name: 8-amino-7-oxononanoate
type: Species
is: 8aonn
constant: false
initial amount: NaN
in compartment: 570138
initial concentration: NaN
has only substance units: false
is: 8-AMINO-7-OXONONANOATE
boundary condition: false

589536
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

599382
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

590620
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

587517
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

576972
stoichiometry: 1.0
species: M KDO DASH 8P LBRACKET C RBRACKET
type: SpeciesReference

591765
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

M DPG LBRACKET C RBRACKET
is: DPG
initial amount: NaN
name: 3-phospho-d-glyceroyl-phosphate
type: Species
constant: false
in compartment: 570138
initial concentration: NaN
is: 13dpg
is: C00236
boundary condition: false
has only substance units: false

586206
reactant: 586218
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of fumarate
type: Reaction

604536
stoichiometry: 1.0
species: M CHARGED DASH PHE DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

618104
stoichiometry: 1.0
species: M DUTP LBRACKET C RBRACKET
type: SpeciesReference

M NIACINAMIDE LBRACKET C RBRACKET
constant: false
is: ncam
is: NIACINAMIDE
boundary condition: false
has only substance units: false
name: niacinamide
initial concentration: NaN
in compartment: 570138
is: C00153
initial amount: NaN
type: Species

574746
stoichiometry: 1.0
species: M CIS DASH CIS DASH MUCONATE LBRACKET E RBRACKET
type: SpeciesReference

618405
stoichiometry: 1.0
species: M CPD DASH 654 LBRACKET C RBRACKET
type: SpeciesReference

590849
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R RXNIM DASH 6206
reactant: 576358
name: ethylsalicylate esterase
reversible: false
type: Reaction
is: RXNIM-6206
product: 576394
product: 576382
reactant: 576370
fast: false
notes: GENE_ASSOCIATION: ACIAD1426

593898
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

M DCMP LBRACKET C RBRACKET
initial amount: NaN
is: C00239
boundary condition: false
is: DCMP
in compartment: 570138
name: dcmp
type: Species
constant: false
has only substance units: false
initial concentration: NaN
is: dcmp

576057
reactant: 576069
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of deoxyinosine
type: Reaction

R 3 DASH ISOPROPYLMALDEHYDROG DASH RXN
product: 599165
product: 599153
fast: false
reactant: 599129
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0469
product: 599177
reactant: 599141
is: IPMD
name: 3-isopropylmalate dehydrogenase
is: 3-ISOPROPYLMALDEHYDROG-RXN
reversible: false

595562
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

605150
stoichiometry: 1.0
species: M DIHYDROXY DASH BUTANONE DASH P LBRACKET C RBRACKET
type: SpeciesReference

600223
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

582302
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

606882
stoichiometry: 1.0
species: M XANTHOSINE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

592438
stoichiometry: 1.0
species: M CPD DASH 148 LBRACKET C RBRACKET
type: SpeciesReference

582399
stoichiometry: 3.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

579549
reactant: 579561
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of xanthine
type: Reaction

579127
stoichiometry: 1.0
species: M HOMO DASH SER LBRACKET C RBRACKET
type: SpeciesReference

608313
type: Reaction
reactant: 608567
product: 608797
reactant: 608555
product: 608616
product: 608821
reactant: 608543
reactant: 608531
name: protein synthesis reaction
notes: GENE_ASSOCIATION:
product: 608736
product: 608628
product: 608676
reactant: 608349
reactant: 608470
product: 608712
reactant: 608337
product: 608640
reactant: 608325
product: 608845
product: 608700
reactant: 608398
reactant: 608386
product: 608579
product: 608773
product: 608785
reactant: 608519
product: 608809
reactant: 608507
product: 608724
product: 608604
product: 608652
reactant: 608458
reactant: 608373
product: 608688
reactant: 608446
reactant: 608361
reactant: 608434
product: 608592
product: 608749
reversible: false
product: 608833
product: 608664
reactant: 608422
reactant: 608410
fast: false
reactant: 608495
product: 608761
reactant: 608483

617718
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R METHIONINE DASH DASH TRNA DASH LIGASE DASH RXN
product: 574986
product: 574974
reactant: 574926
reactant: 574950
fast: false
is: METTRS
name: methionine--trna ligase
reversible: false
reactant: 574938
type: Reaction
is: METHIONINE--TRNA-LIGASE-RXN
notes: GENE_ASSOCIATION: ACIAD0768
product: 574962

573735
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET
type: SpeciesReference

618815
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

608991
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

608193
stoichiometry: 1.0
species: M PRO LBRACKET C RBRACKET
type: SpeciesReference

R GSAAMINOTRANS DASH RXN
product: 575058
reactant: 575046
notes: GENE_ASSOCIATION: ACIAD1201
is: GSAAMINOTRANS-RXN
is: G1SAT
fast: false
reversible: true
name: glutamate-1-semialdehyde 2,1-aminomutase
type: Reaction

M CPD DASH 371 LBRACKET C RBRACKET
is: C01545
type: Species
in compartment: 570138
initial concentration: NaN
name: 1-octanal
constant: false
boundary condition: false
is: CPD-371
initial amount: NaN
has only substance units: false

601390
stoichiometry: 1.0
species: M DEOXYGUANOSINE LBRACKET E RBRACKET
type: SpeciesReference

601234
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH 1
product: 585351
reactant: 585338
notes: GENE_ASSOCIATION: ACIAD1800 or ACIAD3593
is: TRANS-RXN-1
is: FORt2pp
fast: false
reversible: false
name: transport of formate [cytosol;extraorganism](passive)
type: Reaction

603922
stoichiometry: 1.0
species: M FMN LBRACKET C RBRACKET
type: SpeciesReference

R C18 COLON 1 LPAREN C9 RPAREN DASH 3OXOACP DASH SYNTHASE DASH RXN
reversible: false
product: 606558
reactant: 606510
fast: false
name: 3oxoacyl-acp synthase (c18:1(c9))
is: 3-OXOACYL-ACP-SYNTH-RXN
product: 606534
reactant: 606522
type: Reaction
product: 606546
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )

605861
stoichiometry: 1.0
species: M BETAINE LBRACKET C RBRACKET
type: SpeciesReference

M C8 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
initial amount: NaN
name: 3-oxooctanoyl-acp
constant: false
initial concentration: NaN
in compartment: 570138
boundary condition: false
type: Species
is: C05750
has only substance units: false
is: 3ooctACP

R PYRNUTRANSHYDROGEN DASH RXN
fast: false
is: NADTRHD
product: 578092
notes: GENE_ASSOCIATION: ACIAD2274
reversible: false
type: Reaction
product: 578080
reactant: 578056
name: nad(p)(+) transhydrogenase (b-specific)
reactant: 578068
is: PYRNUTRANSHYDROGEN-RXN

574457
stoichiometry: 1.0
species: M ADENOSINE LBRACKET C RBRACKET
type: SpeciesReference

R DCYSDESULF DASH RXN
reactant: 593849
is: DCYSDESULF-RXN
product: 593874
reversible: false
product: 593886
product: 593898
notes: GENE_ASSOCIATION: ACIAD0753
type: Reaction
reactant: 593862
fast: false
name: d-cysteine desulfhydrase
is: CYSDDS

593487
stoichiometry: 1.0
species: 570691
type: SpeciesReference

581520
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R BRANCHED DASH CHAINAMINOTRANSFERILEU DASH RXN
is: BRANCHED-CHAINAMINOTRANSFERILEU-RXN
name: isoleucine aminotransferase
product: 616827
fast: false
is: ILETA
reactant: 616803
product: 616815
type: Reaction
reactant: 616791
reversible: true
notes: GENE_ASSOCIATION: ACIAD0597

R C5 COLON 0 DASH 3OXOCOA DASH THIOLASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
name: 3oxoacyl-coa thiolase (c5:0)
fast: false
type: Reaction
reactant: 599658
reactant: 599646
product: 599682
product: 599670
is: KETOACYLCOATHIOL-RXN
reversible: true

572122
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

586699
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

615824
stoichiometry: 1.0
species: M 1 DASH KETO DASH 2 DASH METHYLVALERATE LBRACKET C RBRACKET
type: SpeciesReference

607074
stoichiometry: 1.0
species: M PROTOPORPHYRINOGEN LBRACKET C RBRACKET
type: SpeciesReference

592898
stoichiometry: 1.0
species: M PROPIONATE LBRACKET C RBRACKET
type: SpeciesReference

578429
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

588262
stoichiometry: 1.0
species: 570883
type: SpeciesReference

M FORMATE LBRACKET C RBRACKET
is: for
initial concentration: NaN
name: formate
type: Species
in compartment: 570138
has only substance units: false
initial amount: NaN
constant: false
is: C00058
is: FORMATE
boundary condition: false

609123
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

R NICOTINAMID DASH RXN
product: 600091
notes: GENE_ASSOCIATION: ACIAD3584 or ACIAD1618
type: Reaction
product: 600103
reversible: false
is: NNAM
reactant: 600079
reactant: 600067
fast: false
is: NICOTINAMID-RXN
name: nicotinamidase

585097
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

M C18 COLON 1 LPAREN C9 RPAREN DASH ACP LBRACKET C RBRACKET
is: OLEOYL-ACYL-CARRIER-PROTEIN
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-octadec-9-enoyl-acp
type: Species

605090
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

616450
stoichiometry: 1.0
species: M URATE LBRACKET C RBRACKET
type: SpeciesReference

616390
reactant: 616402
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of homoserine lactone
type: Reaction

605210
stoichiometry: 1.0
species: M CPD DASH 148 LBRACKET E RBRACKET
type: SpeciesReference

587229
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

602130
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH 118
reactant: 608169
is: PROt4pp
notes: GENE_ASSOCIATION: ACIAD1649
fast: false
type: Reaction
reactant: 608181
is: TRANS-RXN-118
product: 608205
name: transport of l-proline [extraorganism;cytosol](secondary symport)
product: 608193
reversible: false

R SALICYLATE DASH 1 DASH MONOOXYGENASE DASH RXN
product: 618647
name: salicylate 1-monooxygenase
reactant: 618611
product: 618635
notes: GENE_ASSOCIATION: ACIAD0984 or ACIAD1424
type: Reaction
fast: false
product: 618659
reversible: false
is: SALICYLATE-1-MONOOXYGENASE-RXN
product: 618623
reactant: 618587
reactant: 618599

580406
stoichiometry: 1.0
species: M C8 COLON 0 LBRACKET E RBRACKET
type: SpeciesReference

578525
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

572952
stoichiometry: 1.0
species: M 7 COMMA 8 DASH DIHYDROPTEROATE LBRACKET C RBRACKET
type: SpeciesReference

600163
stoichiometry: 1.0
species: M GLYCEROL DASH 3P LBRACKET C RBRACKET
type: SpeciesReference

M UREA LBRACKET C RBRACKET
constant: false
in compartment: 570138
has only substance units: false
is: C00086
initial amount: NaN
name: urea
type: Species
is: urea
boundary condition: false
is: UREA
initial concentration: NaN

R DIACYLGLYKIN DASH RXN
is: DIACYLGLYKIN-RXN
type: Reaction
product: 595550
reversible: false
reactant: 595526
product: 595562
fast: false
notes: GENE_ASSOCIATION: ACIAD2837
name: diacylglycerol kinase
reactant: 595538

610256
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

604114
stoichiometry: 1.0
species: M CPD DASH 3623 LBRACKET E RBRACKET
type: SpeciesReference

R C6 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
is: 3-OXOACYL-ACP-REDUCT-RXN
reversible: false
is: 3OAR60
product: 590320
fast: false
name: 3oxoacyl-acp reductase (c6:0)
notes: GENE_ASSOCIATION: ACIAD0871
type: Reaction
reactant: 590308
reactant: 590296
product: 590332

570186
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 10-FORMYL-THF
type: Species

580490
stoichiometry: 1.0
species: M CPD DASH 1091 LBRACKET C RBRACKET
type: SpeciesReference

M THREO DASH D LPAREN S RPAREN DASH ISO DASH CITRATE LBRACKET C RBRACKET
boundary condition: false
is: icit
is: threo-d(s)-iso-citrate
initial amount: NaN
type: Species
constant: false
has only substance units: false
is: C00311
initial concentration: NaN
name: isocitrate
in compartment: 570138

M C6 COLON 0 LBRACKET C RBRACKET
initial concentration: NaN
is: HEXANOATE
in compartment: 570138
constant: false
initial amount: NaN
type: Species
boundary condition: false
has only substance units: false
name: hexanoate
is: hxa
is: C01585

596249
stoichiometry: 1.0
species: M UMP LBRACKET C RBRACKET
type: SpeciesReference

606690
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

M C5 COLON 0 DASH COA LBRACKET C RBRACKET
is: C00888
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: pentanoyl-coa
type: Species

M FORMATE LBRACKET E RBRACKET
initial concentration: NaN
has only substance units: false
in compartment: 570126
name: formate
initial amount: NaN
constant: false
type: Species
is: C00058
is: for
is: FORMATE
boundary condition: false

596478
stoichiometry: 1.0
species: M FUM LBRACKET E RBRACKET
type: SpeciesReference

617175
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

R LIPIDXSYNTHESIS DASH RXN
reversible: false
reactant: 581074
reactant: 581062
notes: GENE_ASSOCIATION: ACIAD1922
product: 581086
is: USHD
name: udp-2,3-diacylglucosamine hydrolase
product: 581098
fast: false
is: LIPIDXSYNTHESIS-RXN
type: Reaction

586146
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

575022
stoichiometry: 1.0
species: M C12 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

605222
stoichiometry: 1.0
species: M CPD DASH 148 LBRACKET C RBRACKET
type: SpeciesReference

612038
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

572146
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

M 2C DASH METH DASH D DASH ERYTHRITOL DASH CYCLODIPHOSPHATE LBRACKET C RBRACKET
has only substance units: false
initial concentration: NaN
name: 2-c-methyl-d-erythritol-2,4-cyclodiphosphate
is: C11453
initial amount: NaN
boundary condition: false
in compartment: 570138
is: 2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE
type: Species
is: 2mecdp
constant: false

R CYT DASH UBIQUINOL DASH OXID DASH D DASH RXN
product: 596345
fast: false
notes: GENE_ASSOCIATION: ACIAD2290 and ACIAD2291
product: 596358
is: CYTBD
reactant: 596321
reversible: false
name: cytochrome oxidase bd
reactant: 596297
is: RXN0-5266
product: 596333
type: Reaction
reactant: 596309

R 2 PERIOD 6 PERIOD 1 PERIOD 76 DASH RXN
is: 2.6.1.76-RXN
fast: false
name: diaminobutyrate-2-oxoglutarate transaminase
reactant: 609764
type: Reaction
reactant: 609752
product: 609788
reversible: true
notes: GENE_ASSOCIATION: ACIAD1210
product: 609776

615260
stoichiometry: 1.0
species: M HIS LBRACKET C RBRACKET
type: SpeciesReference

R DHBDEHYD DASH RXN
product: 599454
reversible: false
is: DHBDEHYD-RXN
product: 599442
notes: GENE_ASSOCIATION: ACIAD2774
reactant: 599418
is: DHBD
fast: false
name: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
reactant: 599430
type: Reaction

607182
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

617923
reactant: 617935
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of thymidine
type: Reaction

612952
stoichiometry: 1.0
species: M 3 DASH DEOXY DASH D DASH ARABINO DASH HEPTULOSONATE DASH 7 DASH P LBRACKET C RBRACKET
type: SpeciesReference

582810
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

R LIPIDADISACCHARIDESYNTH DASH RXN
is: LPADSS
reactant: 578766
reactant: 578754
is: LIPIDADISACCHARIDESYNTH-RXN
type: Reaction
product: 578790
notes: GENE_ASSOCIATION: ACIAD2324
name: lipid-a-disaccharide synthase
fast: false
product: 578778
reversible: false

581098
stoichiometry: 1.0
species: M UMP LBRACKET C RBRACKET
type: SpeciesReference

615716
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

580226
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

580078
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

M FRU1P LBRACKET C RBRACKET
boundary condition: false
has only substance units: false
is: C02976
in compartment: 570138
initial amount: NaN
is: FRU1P
is: f1p
initial concentration: NaN
type: Species
constant: false
name: fructose-1-phosphate

R C12 COLON 0 DASH 3OXOACP DASH SYNTHASE DASH RXN
product: 580942
is: 3-OXOACYL-ACP-SYNTH-RXN
is: 3OAS120
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
reactant: 580918
name: 3oxoacyl-acp synthase (c12:0)
product: 580966
product: 580954
type: Reaction
reversible: false
fast: false
reactant: 580930

585581
reactant: 585593
name: generic acyl-coa of triacylglycerol assembly
reactant: 585641
type: Reaction
reversible: true
fast: false
product: 585653
notes: GENE_ASSOCIATION:
reactant: 585629
reactant: 585617
reactant: 585605

R C4 COLON 0 DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
name: 3hydroxyacyl-acp dehydratase (c4:0)
is: 3HAD40
fast: false
product: 612508
type: Reaction
product: 612520
reactant: 612496
notes: GENE_ASSOCIATION: ACIAD1381
reversible: false

R GLUCONOLACT DASH RXN
reactant: 591596
reactant: 591608
notes: GENE_ASSOCIATION: ACIAD2819 or SPONT SPONTANEOUS: TRUE
type: Reaction
fast: false
reversible: true
is: GLUCONOLACT-RXN
product: 591620
is: GLCDpp
name: gluconolactonase

M 3 DASH OXOADIPATE DASH ENOL DASH LACTONE LBRACKET C RBRACKET
in compartment: 570138
is: 3-OXOADIPATE-ENOL-LACTONE
boundary condition: false
is: C03586
is: 5odhf2a
constant: false
has only substance units: false
initial amount: NaN
type: Species
initial concentration: NaN
name: 3-oxoadipate-enol-lactone

577876
stoichiometry: 1.0
species: M VANILLIN LBRACKET C RBRACKET
type: SpeciesReference

R SIROHEME DASH FERROCHELAT DASH RXN
reversible: false
is: SIROHEME-FERROCHELAT-RXN
product: 581653
reactant: 581640
notes: GENE_ASSOCIATION: ACIAD2934
fast: false
type: Reaction
is: SHCHF
product: 581665
reactant: 581628
name: sirohydrochlorin ferrochelatase

M RIBULOSE DASH 5P LBRACKET C RBRACKET
is: ru5p-D
name: ribulose-5-phosphate
is: RIBULOSE-5P
has only substance units: false
is: C00199
type: Species
constant: false
initial amount: NaN
boundary condition: false
initial concentration: NaN
in compartment: 570138

603164
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

583869
stoichiometry: 1.0
species: M CONIFERYL DASH ALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

R GLUTDEHYD DASH RXN
reactant: 607580
reversible: true
product: 607616
type: Reaction
reactant: 607592
notes: GENE_ASSOCIATION: ACIAD1110 or ACIAD2680
fast: false
product: 607604
product: 607628
is: GLUTDEHYD-RXN
is: GLUDy
reactant: 607568
name: glutamate dehydrogenase (nadp+)

R DCTP DASH DEAM DASH RXN
name: dctp deaminase
fast: false
is: DCTP-DEAM-RXN
reversible: false
notes: GENE_ASSOCIATION: ACIAD0776
product: 607904
reactant: 607880
reactant: 607892
type: Reaction
is: DCTPD
product: 607916

608881
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

R ACETYLORNTRANSAM DASH RXN
reactant: 580978
fast: false
is: ACETYLORNTRANSAM-RXN
is: ACOTA
reversible: true
type: Reaction
product: 581014
name: acetylornithine aminotransferase
notes: GENE_ASSOCIATION: ACIAD1231 or ACIAD1284
product: 581002
reactant: 580990

611375
stoichiometry: 1.0
species: M 4 DASH HYDROXY DASH BENZYL DASH ALCOHOL LBRACKET C RBRACKET
type: SpeciesReference

617826
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M HOMOSERINE DASH LACTONE LBRACKET C RBRACKET
is: HOMOSERINE-LACTONE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: homoserine lactone
type: Species

597465
reactant: 597477
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of adenosine
type: Reaction

616282
stoichiometry: 1.0
species: M CYTIDINE LBRACKET E RBRACKET
type: SpeciesReference

R GLUTKIN DASH RXN
fast: false
name: glutamate 5-kinase
reactant: 579006
is: GLUTKIN-RXN
is: GLU5K
notes: GENE_ASSOCIATION: ACIAD2560
reversible: false
product: 579030
product: 579018
type: Reaction
reactant: 578994

585593
stoichiometry: 0.022
species: M C14 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M C18 COLON 0 LBRACKET C RBRACKET
constant: false
is: ocdca
is: STEARIC ACID
initial concentration: NaN
boundary condition: false
name: octadenoate
is: C01530
initial amount: NaN
in compartment: 570138
type: Species
has only substance units: false

585713
stoichiometry: 1.0
species: M NITRATE LBRACKET E RBRACKET
type: SpeciesReference

578958
stoichiometry: 1.0
species: M 3 DASH OCTAPRENYL DASH 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET
type: SpeciesReference

597513
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

596009
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

580978
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

592802
stoichiometry: 1.0
species: M ADENOSINE LBRACKET C RBRACKET
type: SpeciesReference

588766
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH FORMAMIDO DASH CARBOXAMIDE LBRACKET C RBRACKET
type: SpeciesReference

M METHYL DASH GLYOXAL LBRACKET C RBRACKET
has only substance units: false
type: Species
is: mthgxl
constant: false
is: C00546
boundary condition: false
is: METHYL-GLYOXAL
name: methylglyoxal
in compartment: 570138
initial amount: NaN
initial concentration: NaN

R C10 COLON 0 DASH CARBOXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
is: RXNIM-6199
reactant: 582302
product: 582338
notes: GENE_ASSOCIATION: ACIAD1693
fast: false
reactant: 582314
name: dicarboxylate acyl-coa dehydrogenase (c10:0)
reversible: false
product: 582326

593403
stoichiometry: 1.0
species: M GLYOX LBRACKET C RBRACKET
type: SpeciesReference

579837
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

572843
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

R SERINE DASH DASH TRNA DASH LIGASE DASH RXN
is: SERTRS
reactant: 603585
reactant: 603597
reactant: 603573
product: 603609
fast: false
product: 603621
is: SERINE--TRNA-LIGASE-RXN
product: 603633
type: Reaction
reversible: false
name: serine--trna ligase
notes: GENE_ASSOCIATION: ACIAD2935

R 3 DASH DEHYDROQUINATE DASH DEHYDRATASE DASH RXN
reactant: 589427
reversible: true
is: DHQTi
type: Reaction
name: 3-dehydroquinate dehydratase
product: 589451
notes: GENE_ASSOCIATION: ACIAD1738
is: 3-DEHYDROQUINATE-DEHYDRATASE-RXN
fast: false
product: 589439

595140
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

M L DASH LACTATE LBRACKET E RBRACKET
initial amount: NaN
type: Species
constant: false
has only substance units: false
name: lactate
is: lac-L
is: C00186
boundary condition: false
in compartment: 570126
is: L-LACTATE
initial concentration: NaN

M ETOH LBRACKET C RBRACKET
type: Species
constant: false
in compartment: 570138
is: etoh
is: ETOH
is: C00469
initial amount: NaN
boundary condition: false
initial concentration: NaN
has only substance units: false
name: ethanol

605378
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

598972
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET
type: SpeciesReference

M MALONATE LBRACKET E RBRACKET
initial amount: NaN
is: C00383
type: Species
in compartment: 570126
is: MALONATE
has only substance units: false
boundary condition: false
constant: false
name: malonate
initial concentration: NaN

576406
stoichiometry: 1.0
species: M GLC DASH 1 DASH P LBRACKET C RBRACKET
type: SpeciesReference

M PHOSPHORIBOSYL DASH FORMAMIDO DASH CARBOXAMIDE LBRACKET C RBRACKET
has only substance units: false
is: fprica
is: PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE
boundary condition: false
initial amount: NaN
initial concentration: NaN
is: C04734
type: Species
in compartment: 570138
name: phosphoribosyl-formamido-carboxamide
constant: false

598827
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

M XYLULOSE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET
is: XYLULOSE-5-PHOSPHATE
constant: false
has only substance units: false
name: xylulose-5-phosphate
initial amount: NaN
is: xu5p-D
boundary condition: false
type: Species
initial concentration: NaN
in compartment: 570138
is: C00231

R TRANS DASH RXN DASH THR DASH EFLX
name: transport of l-threonine [cytosol;extraorganism](secondary antiport)
reversible: false
reactant: 617477
product: 617501
is: THRt2pp
product: 617513
notes: GENE_ASSOCIATION: ACIAD0759 or ACIAD2980 or ACIAD3166
fast: false
is: TRANS-RXN-244
type: Reaction
reactant: 617489

611206
stoichiometry: 1.0
species: M ADIPATE LBRACKET E RBRACKET
type: SpeciesReference

601186
stoichiometry: 1.0
species: 570475
type: SpeciesReference

614457
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

594792
stoichiometry: 1.0
species: M C12 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

571810
stoichiometry: 1.0
species: M C12 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

M 2 DASH PG LBRACKET C RBRACKET
constant: false
is: 2pg
type: Species
in compartment: 570138
boundary condition: false
is: 2-PG
is: C00631
has only substance units: false
name: 2-phosphoglycerate
initial concentration: NaN
initial amount: NaN

572098
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

591259
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

612808
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

581882
stoichiometry: 1.0
species: M GLYCEROL LBRACKET E RBRACKET
type: SpeciesReference

600560
stoichiometry: 1.0
species: 570667
type: SpeciesReference

587373
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

M CDPDIACYLGLYCEROL LBRACKET C RBRACKET
in compartment: 570138
initial amount: NaN
constant: false
is: C00269
has only substance units: false
boundary condition: false
type: Species
is: CDPDIACYLGLYCEROL
name: generic cdp-diacylglycerol
is: cdpdag EC
initial concentration: NaN

592548
stoichiometry: 1.0
species: M CPD DASH 578 LBRACKET C RBRACKET
type: SpeciesReference

R CYCLOHEXADIENYL DASH DEHYDROGENASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD2222
reactant: 577032
is: CYCLOHEXADIENYL-DEHYDROGENASE-RXN
product: 577082
reactant: 577044
type: Reaction
name: cyclohexadienyl dehydrogenase
fast: false
reversible: false
product: 577056
product: 577069

590380
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

611351
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

604982
stoichiometry: 1.0
species: M NIACINE LBRACKET C RBRACKET
type: SpeciesReference

582834
stoichiometry: 1.0
species: M PRO LBRACKET E RBRACKET
type: SpeciesReference

618332
stoichiometry: 1.0
species: M GDP LBRACKET C RBRACKET
type: SpeciesReference

595454
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

602828
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

616342
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

M HOMO DASH CYS LBRACKET C RBRACKET
is: hcys-L
is: C00155
name: homocysteine
type: Species
initial amount: NaN
is: HOMO-CYS
boundary condition: false
constant: false
initial concentration: NaN
in compartment: 570138
has only substance units: false

596587
stoichiometry: 1.0
species: M FUM LBRACKET C RBRACKET
type: SpeciesReference

M CARNITINE LBRACKET E RBRACKET
has only substance units: false
initial amount: NaN
initial concentration: NaN
type: Species
constant: false
is: CARNITINE
is: C00318
in compartment: 570126
name: l-carnitine
boundary condition: false
is: crn

R TRANS DASH RXN DASH DEOXYURIDINE
reactant: 574469
product: 574493
is: DURIt2pp
name: transport of deoxyuridine [extraorganism;cytosol](secondary symport)
reactant: 574481
is: TRANS-RXN-108F
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2389
reversible: false
product: 574505
fast: false

M DIACYLGLYCEROL LBRACKET C RBRACKET
is: C00641
constant: false
boundary condition: false
in compartment: 570138
name: 1,2-diacylglycerol
initial concentration: NaN
has only substance units: false
initial amount: NaN
type: Species
is: DIACYLGLYCEROL

614186
stoichiometry: 1.0
species: M KDO2 DASH LIPID DASH IVA LBRACKET C RBRACKET
type: SpeciesReference

608785
stoichiometry: 0.0988
species: 571244
type: SpeciesReference

600380
stoichiometry: 1.0
species: M LYS LBRACKET E RBRACKET
type: SpeciesReference

591681
stoichiometry: 1.0
species: M MALONATE LBRACKET E RBRACKET
type: SpeciesReference

579609
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

612158
stoichiometry: 1.0
species: M DEOXYCYTIDINE LBRACKET C RBRACKET
type: SpeciesReference

M FADH2 LBRACKET C RBRACKET
constant: false
has only substance units: false
is: fadh2
boundary condition: false
is: FADH2
type: Species
initial concentration: NaN
in compartment: 570138
is: C01352
name: fadh2
initial amount: NaN

595877
stoichiometry: 1.0
species: M TRP DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

586856
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M RED DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
is: trdrd
name: reduced thioredoxin
initial concentration: NaN
initial amount: NaN
is: RED-THIOREDOXIN-MONOMER
is: C00342
boundary condition: false
type: Species
constant: false
has only substance units: false
in compartment: 570138

618755
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

585869
stoichiometry: 1.0
species: M NITRATE LBRACKET C RBRACKET
type: SpeciesReference

593102
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

R ASPARTATE DASH DASH TRNA DASH LIGASE DASH RXN
reactant: 595406
product: 595430
reactant: 595394
type: Reaction
is: ASPTRS
product: 595454
product: 595442
is: ASPARTATE--TRNA-LIGASE-RXN
reactant: 595418
reversible: false
notes: GENE_ASSOCIATION: ACIAD0609
fast: false
name: aspartate--trna ligase

607640
reactant: 607652
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of malonate
type: Reaction

R DAHPSYN DASH RXN
reactant: 598067
reactant: 598055
is: DAHPSYN-RXN
name: 2-dehydro-3-deoxyphosphoheptonate aldolase
notes: GENE_ASSOCIATION: ACIAD2330 or ACIAD1878
type: Reaction
reactant: 598079
fast: false
reversible: false
is: DDPA
product: 598091
product: 598103

577142
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

591873
stoichiometry: 1.0
species: M GDP LBRACKET C RBRACKET
type: SpeciesReference

M CYS LBRACKET C RBRACKET
initial concentration: NaN
boundary condition: false
is: C00097
type: Species
in compartment: 570138
initial amount: NaN
is: CYS
is: cys-L
has only substance units: false
constant: false
name: l-cysteine

598549
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

607700
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

589644
stoichiometry: 1.0
species: M FRUCTOSE DASH 6P LBRACKET C RBRACKET
type: SpeciesReference

588526
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R RXN DASH 681
product: 579115
product: 579103
reactant: 579091
notes: GENE_ASSOCIATION: ACIAD1211
is: RXN-681
fast: false
reversible: false
name: l-2,4-diaminobutyrate decarboxylase
type: Reaction

M N DASH SUCCINYLLL DASH 2 COMMA 6 DASH DIAMINOPIMELATE LBRACKET C RBRACKET
initial amount: NaN
is: sl26da
boundary condition: false
in compartment: 570138
has only substance units: false
type: Species
is: C04421
constant: false
initial concentration: NaN
name: n-succinyl-ll-2,6-diaminopimelate
is: n-succinylll-2,6-diaminopimelate

573254
stoichiometry: 1.0
species: M C14 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: SpeciesReference

609776
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

615560
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

614665
stoichiometry: 1.0
species: M DIHYDRO DASH NEO DASH PTERIN LBRACKET C RBRACKET
type: SpeciesReference

579488
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

587709
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

606966
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R ALDOXIME DASH DEHYDRAT DASH RXN
product: 609400
product: 609388
reactant: 609376
notes: GENE_ASSOCIATION: ACIAD1620
is: RXNIM-6223
fast: false
reversible: false
name: propionaldoxime aldoxime dehydratase
type: Reaction

576912
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

M S DASH LACTOYL DASH GLUTATHIONE LBRACKET C RBRACKET
is: C03451
in compartment: 570138
name: s-lactoyl-glutathione
initial amount: NaN
boundary condition: false
type: Species
has only substance units: false
is: S-LACTOYL-GLUTATHIONE
initial concentration: NaN
is: lgt-S
constant: false

603020
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: SpeciesReference

600957
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

R 4 DASH COUMARATE DASH DASH COA DASH LIGASE DASH RXN
reactant: 611930
type: Reaction
is: 4-COUMARATE--COA-LIGASE-RXN
reactant: 611954
product: 611978
name: 4-coumarate--coa ligase
product: 611990
fast: false
product: 611966
notes: GENE_ASSOCIATION: ACIAD1724
reactant: 611942
reversible: false

575961
stoichiometry: 1.0
species: M C12 COLON 1 LPAREN C3 RPAREN DASH COA LBRACKET C RBRACKET
type: SpeciesReference

596731
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

595346
stoichiometry: 1.0
species: M DCTP LBRACKET C RBRACKET
type: SpeciesReference

583556
stoichiometry: 1.0
species: 570306
type: SpeciesReference

591536
stoichiometry: 1.0
species: M ANTHRANILATE LBRACKET C RBRACKET
type: SpeciesReference

M GLYCEROL LBRACKET C RBRACKET
initial amount: NaN
initial concentration: NaN
type: Species
name: glycerol
is: C00116
boundary condition: false
is: GLYCEROL
in compartment: 570138
has only substance units: false
constant: false
is: glyc

M C16 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
name: 3-hydroxyhexadecanoyl-coa
type: Species
initial amount: NaN
initial concentration: NaN
constant: false
is: C05258
is: 3hhdcoa
has only substance units: false
boundary condition: false
in compartment: 570138

573663
stoichiometry: 1.0
species: M N DASH ALPHA DASH ACETYLORNITHINE LBRACKET C RBRACKET
type: SpeciesReference

607398
stoichiometry: 0.07
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

576261
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R C8 COLON 0 DASH COA DASH DEHYDROGENASE DASH RXN
reactant: 598128
is: ACYLCOADEHYDROG-RXN
reactant: 598115
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566
fast: false
product: 598152
type: Reaction
reversible: false
product: 598140
name: acyl-coa dehydrogenase (c8:0)
is: ACOAD3f

571678
stoichiometry: 1.0
species: M D DASH GALACTARATE LBRACKET C RBRACKET
type: SpeciesReference

R MALONYL DASH ACPDECARBOX DASH RXN
name: malonyl-acp decarboxylase
is: MACPD
product: 573037
fast: false
notes: GENE_ASSOCIATION: ACIAD0879
reversible: false
product: 573049
is: MALONYL-ACPDECARBOX-RXN
type: Reaction
reactant: 573025

574962
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

577214
stoichiometry: 1.0
species: M C10 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

585797
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R PRPPSYN DASH RXN
is: PRPPS
type: Reaction
reactant: 616486
name: ribose-phosphate pyrophosphokinase
product: 616510
notes: GENE_ASSOCIATION: ACIAD2907
product: 616498
fast: false
is: PRPPSYN-RXN
reversible: true
reactant: 616474

573085
stoichiometry: 1.0
species: M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET P RBRACKET
type: SpeciesReference

604078
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

588154
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

576334
stoichiometry: 1.0
species: M SALICYLALDEHYDE LBRACKET C RBRACKET
type: SpeciesReference

M C8 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
boundary condition: false
initial concentration: NaN
is: C05276
type: Species
constant: false
is: oc2coa
in compartment: 570138
initial amount: NaN
name: trans-octa-2-enoyl-coa
has only substance units: false

R THREONINE DASH DASH TRNA DASH LIGASE DASH RXN
reactant: 611254
notes: GENE_ASSOCIATION: ACIAD3055
product: 611315
product: 611303
name: threonine--trna ligase
type: Reaction
product: 611291
reactant: 611266
fast: false
reactant: 611278
is: THRTRS
is: THREONINE--TRNA-LIGASE-RXN
reversible: false

R L DASH ASPARTATE DASH OXIDASE DASH RXN
reversible: false
product: 584161
product: 584149
type: Reaction
is: ASPO6
product: 584137
fast: false
is: L-ASPARTATE-OXIDASE-RXN
reactant: 584101
name: l-aspartate oxidase (producing oxaloacetate)
reactant: 584113
notes: GENE_ASSOCIATION: ACIAD2587
reactant: 584125

574349
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

599490
stoichiometry: 0.315
species: 570775
type: SpeciesReference

614768
stoichiometry: 1.0
species: 570438
type: SpeciesReference

594900
stoichiometry: 1.0
species: M GLUCONATE LBRACKET C RBRACKET
type: SpeciesReference

609340
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M 2 DASH OCTAPRENYLPHENOL LBRACKET C RBRACKET
constant: false
is: C05810
initial concentration: NaN
has only substance units: false
type: Species
name: 2-octaprenylphenol
is: 2oph
in compartment: 570138
boundary condition: false
initial amount: NaN
is: 2-OCTAPRENYLPHENOL

R TRANS DASH RXNIM DASH 5747
product: 605861
reactant: 605849
notes: GENE_ASSOCIATION: ACIAD2280 or ACIAD1036
is: TRANS-RXNIM-5747
fast: false
reversible: true
name: transport of betaine [extraorganism;cytosol](passive)
type: Reaction

609412
stoichiometry: 1.0
species: M FMNH2 LBRACKET C RBRACKET
type: SpeciesReference

587913
stoichiometry: 1.0
species: 571148
type: SpeciesReference

M MAL LBRACKET C RBRACKET
boundary condition: false
is: C00149
initial concentration: NaN
in compartment: 570138
type: Species
is: MAL
is: mal-L
name: malate
has only substance units: false
initial amount: NaN
constant: false

590222
stoichiometry: 1.0
species: M G3P LBRACKET C RBRACKET
type: SpeciesReference

R SUCCCOASYN DASH RXN
notes: GENE_ASSOCIATION: ACIAD2873 and ACIAD2872
is: SUCCCOASYN-RXN
reactant: 590632
product: 590657
type: Reaction
reactant: 590645
fast: false
reversible: true
reactant: 590620
product: 590681
product: 590669
name: succinate--coa ligase (adp-forming)
is: SUCOAS

593258
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

592174
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

614828
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

590162
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

590512
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET
type: SpeciesReference

601451
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

583652
stoichiometry: 0.62
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

574035
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

601306
stoichiometry: 1.0
species: M THZ DASH P LBRACKET C RBRACKET
type: SpeciesReference

578381
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

611086
stoichiometry: 1.0
species: M SHIKIMATE LBRACKET P RBRACKET
type: SpeciesReference

607326
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

611990
stoichiometry: 1.0
species: M COUMARYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

600620
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET
type: SpeciesReference

608109
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

579921
stoichiometry: 1.0
species: M ACETALD LBRACKET C RBRACKET
type: SpeciesReference

575625
stoichiometry: 1.0
species: M CPD DASH 335 LBRACKET E RBRACKET
type: SpeciesReference

585375
stoichiometry: 1.0
species: M D DASH ALANINE LBRACKET C RBRACKET
type: SpeciesReference

572627
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

M C18 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
is: 3oodcoa
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-oxooctadecanoyl-coa
type: Species

594708
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

575274
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

617441
stoichiometry: 1.0
species: 570895
type: SpeciesReference

577659
stoichiometry: 1.0
species: M 2 DASH OCTAPRENYL DASH 6 DASH HYDROXYPHENOL LBRACKET C RBRACKET
type: SpeciesReference

589788
stoichiometry: 1.0
species: M APS LBRACKET C RBRACKET
type: SpeciesReference

602033
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

615116
stoichiometry: 1.0
species: M D DASH GALACTARATE LBRACKET E RBRACKET
type: SpeciesReference

597308
stoichiometry: 1.0
species: M GLY LBRACKET C RBRACKET
type: SpeciesReference

576526
stoichiometry: 1.0
species: M DGMP LBRACKET C RBRACKET
type: SpeciesReference

M C16 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
constant: false
boundary condition: false
is: C05762
name: 3-oxohexadecanoyl-acp
has only substance units: false
is: 3opalmACP
in compartment: 570138
initial amount: NaN
initial concentration: NaN
type: Species

613967
stoichiometry: 1.0
species: M NITRATE LBRACKET E RBRACKET
type: SpeciesReference

610076
stoichiometry: 1.0
species: M URIDINE LBRACKET E RBRACKET
type: SpeciesReference

589391
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

593330
stoichiometry: 1.0
species: M C6 COLON 2 LPAREN C2 COMMA C4 RPAREN LBRACKET C RBRACKET
type: SpeciesReference

604488
stoichiometry: 1.0
species: M PHE LBRACKET C RBRACKET
type: SpeciesReference

603597
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M UDP DASH OHMYR DASH ACETYLGLUCOSAMINE LBRACKET C RBRACKET
constant: false
boundary condition: false
is: u3aga
name: udp-3-o-(3-hydroxymyristoyl)-n-acetylglucosamine
initial amount: NaN
has only substance units: false
is: UDP-OHMYR-ACETYLGLUCOSAMINE
in compartment: 570138
initial concentration: NaN
is: C04738
type: Species

594864
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

574409
stoichiometry: 1.0
species: M FRUCTOSE DASH 6P LBRACKET C RBRACKET
type: SpeciesReference

587853
stoichiometry: 1.0
species: M 4 DASH HYDROXYBENZOATE LBRACKET E RBRACKET
type: SpeciesReference

602467
stoichiometry: 8.0
species: M DELTA LPAREN 3 RPAREN DASH ISOPENTENYL DASH PP LBRACKET C RBRACKET
type: SpeciesReference

M C10 COLON 0 LBRACKET E RBRACKET
in compartment: 570126
type: Species
is: CPD-3617
boundary condition: false
initial concentration: NaN
constant: false
is: dca
initial amount: NaN
is: C01571
has only substance units: false
name: decanoate

581677
stoichiometry: 1.0
species: M C10 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

596141
stoichiometry: 1.0
species: 570871
type: SpeciesReference

609944
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

580906
stoichiometry: 1.0
species: 570992
type: SpeciesReference

R C6 COLON 2 LPAREN c2 COMMA c4 RPAREN DASH COATRANSFERASE DASH RXN
reactant: 604584
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
is: ACYLCOASYN-RXN
product: 604620
reactant: 604572
reversible: false
product: 604596
reactant: 604560
name: acyl coa transferase (c6:2(c2,c4))
type: Reaction
product: 604608
fast: false

575371
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

579283
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

584713
stoichiometry: 1.0
species: M UDP DASH GLUCOSE LBRACKET C RBRACKET
type: SpeciesReference

M DEOXYXYLULOSE DASH 5P LBRACKET C RBRACKET
is: DEOXYXYLULOSE-5P
initial amount: NaN
boundary condition: false
is: C11437
constant: false
type: Species
in compartment: 570138
name: 1-deoxy-d-xylulose 5-phosphate
initial concentration: NaN
is: dxyl5p
has only substance units: false

617477
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

584569
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

577900
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

R ASPAMINOTRANS DASH RXN
notes: GENE_ASSOCIATION: ACIAD2574 or ACIAD2087
reactant: 591151
name: aspartate aminotransferase
product: 591175
reversible: true
type: Reaction
product: 591163
fast: false
is: ASPAMINOTRANS-RXN
reactant: 591139
is: ASPTA

578898
stoichiometry: 1.0
species: M UDP DASH ACETYL DASH CARBOXYVINYL DASH GLUCOSAMINE LBRACKET C RBRACKET
type: SpeciesReference

573000
stoichiometry: 1.0
species: M DIHYDROFOLATE LBRACKET C RBRACKET
type: SpeciesReference

604752
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

R ALARACECAT DASH RXN
product: 585375
reactant: 585363
notes: GENE_ASSOCIATION: ACIAD2434 or ACIAD0116
is: ALARACECAT-RXN
is: ALAR
fast: false
reversible: true
name: alanine racemase
type: Reaction

617513
stoichiometry: 1.0
species: M THR LBRACKET E RBRACKET
type: SpeciesReference

611412
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

604656
stoichiometry: 1.0
species: 570871
type: SpeciesReference

591199
stoichiometry: 1.0
species: M P DASH AMINO DASH BENZOATE LBRACKET C RBRACKET
type: SpeciesReference

609279
stoichiometry: 1.0
species: M 4 DASH AMINO DASH BUTYRATE LBRACKET E RBRACKET
type: SpeciesReference

M AMINO DASH HYDROXYMETHYL DASH METHYL DASH PYR DASH P LBRACKET C RBRACKET
is: 4ampm
is: AMINO-HYDROXYMETHYL-METHYL-PYR-P
name: 4-amino-5-hydroxymethyl-2-methylpyrimidine-phosphate
is: C04556
in compartment: 570138
type: Species
initial amount: NaN
boundary condition: false
has only substance units: false
initial concentration: NaN
constant: false

M 5 DASH METHYL DASH THF LBRACKET C RBRACKET
type: Species
is: 5-METHYL-THF
is: C00440
has only substance units: false
in compartment: 570138
constant: false
name: 5-methyl-thf
boundary condition: false
initial concentration: NaN
is: 5mthf
initial amount: NaN

R RXNIM DASH 6092
product: 573747
reversible: false
is: METB1
name: o-acylhomoserine sulfhydrylase
is: RXNIM-6092
fast: false
type: Reaction
reactant: 573723
reactant: 573711
product: 573735
notes: GENE_ASSOCIATION: ACIAD2314

M PYRIDOXAMINE DASH 5P LBRACKET C RBRACKET
is: pyam5p
initial concentration: NaN
in compartment: 570138
name: pyridoxamine 5'-phosphate
boundary condition: false
has only substance units: false
is: C00647
constant: false
type: Species
initial amount: NaN
is: PYRIDOXAMINE-5P

599274
reactant: 599286
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: exchange flux of phosphate
type: Reaction

589836
stoichiometry: 1.0
species: M DELTA LPAREN 3 RPAREN DASH ISOPENTENYL DASH PP LBRACKET C RBRACKET
type: SpeciesReference

587300
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

618550
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

R FABAUNSATDEHYDR DASH RXN
reversible: false
product: 613338
fast: false
is: 3HAD100
product: 613350
type: Reaction
reactant: 613326
notes: GENE_ASSOCIATION: ACIAD1381
is: FABAUNSATDEHYDR-RXN
name: 3hydroxyacyl-acp dehydratase (c10:0)

587168
stoichiometry: 1.0
species: M PRA LBRACKET C RBRACKET
type: SpeciesReference

M ACETOACETYL DASH COA LBRACKET C RBRACKET
is: ACETOACETYL-COA
is: aacoa
initial amount: NaN
constant: false
type: Species
in compartment: 570138
name: acetoacetyl-coa
initial concentration: NaN
is: C00332
has only substance units: false
boundary condition: false

588682
stoichiometry: 1.0
species: M SER LBRACKET C RBRACKET
type: SpeciesReference

589993
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

616126
stoichiometry: 1.0
species: M TRANS DASH FERULOYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

598609
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R RXNIM DASH 6095
product: 573867
reactant: 573855
reactant: 573843
notes: GENE_ASSOCIATION: ACIAD1726
is: RXNIM-6095
fast: false
reversible: true
name: coumaryl-coa lyase
type: Reaction

577719
stoichiometry: 1.0
species: M SHIKIMATE LBRACKET P RBRACKET
type: SpeciesReference

610100
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

594563
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

M CHARGED DASH GLY DASH TRNAS LBRACKET C RBRACKET
in compartment: 570138
constant: false
initial amount: NaN
initial concentration: NaN
name: charged glycine trna
boundary condition: false
is: C02412
has only substance units: false
is: glytrna
type: Species
is: CHARGED-GLY-TRNAS

605439
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R NICONUCADENYLYLTRAN DASH RXN
product: 612314
notes: GENE_ASSOCIATION: ACIAD2606
is: NNATr
reversible: false
is: NICONUCADENYLYLTRAN-RXN
name: nicotinate-nucleotide adenylyltransferase
product: 612302
fast: false
reactant: 612290
type: Reaction
reactant: 612278

586062
stoichiometry: 1.0
species: M CPD DASH 421 LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH CPD DASH 205
notes: GENE_ASSOCIATION: ACIAD1694
reactant: 593355
name: transport of pimelate [extraorganism;cytosol](secondary symport)
product: 593367
type: Reaction
reactant: 593342
is: TRANS-RXNIM-5910
fast: false
product: 593379
reversible: true

M GLC LBRACKET E RBRACKET
initial concentration: NaN
constant: false
is: GLC
is: C00031
name: beta-d-glucose
has only substance units: false
boundary condition: false
in compartment: 570126
type: Species
is: glc-D
initial amount: NaN

598031
reactant: 598043
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of inosine
type: Reaction

611146
stoichiometry: 1.0
species: M SUC DASH COA LBRACKET C RBRACKET
type: SpeciesReference

607976
stoichiometry: 1.0
species: M L DASH 1 DASH PHOSPHATIDYL DASH GLYCEROL DASH P LBRACKET C RBRACKET
type: SpeciesReference

M 3 DASH OHLAUROYL DASH ACP LBRACKET C RBRACKET
in compartment: 570138
name: 3-hydroxydodecanoyl-acp
initial concentration: NaN
is: C05757
has only substance units: false
type: Species
is: 3hddecACP
constant: false
boundary condition: false
initial amount: NaN

580153
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 561 LBRACKET C RBRACKET
in compartment: 570138
has only substance units: false
type: Species
name: s-d-ribosyl-l-homocysteine
is: rhcys
is: C03539
initial concentration: NaN
initial amount: NaN
constant: false
boundary condition: false
is: CPD-561

M SUBERATE LBRACKET E RBRACKET
is: C08278
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: suberate
type: Species

R 2 PERIOD 7 PERIOD 7 PERIOD 1 DASH RXN
reactant: 595961
is: 2.7.7.1-RXN
name: nicotinamide-nucleotide adenylyltransferase
type: Reaction
product: 595985
reactant: 595949
notes: GENE_ASSOCIATION: ACIAD2606
is: NMNAT
product: 595973
fast: false
reversible: true

R ADENPRIBOSYLTRAN DASH RXN
name: adenine phosphoribosyltransferase
is: ADPT
product: 604259
notes: GENE_ASSOCIATION: ACIAD3164
product: 604271
reactant: 604247
type: Reaction
is: ADENPRIBOSYLTRAN-RXN
reversible: false
reactant: 604235
fast: false

610424
stoichiometry: 1.0
species: M CPD DASH 6501 LBRACKET E RBRACKET
type: SpeciesReference

587673
stoichiometry: 1.0
species: M DADP LBRACKET C RBRACKET
type: SpeciesReference

581725
reactant: 581737
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of pyruvate
type: Reaction

M VANILLIN LBRACKET C RBRACKET
initial concentration: NaN
boundary condition: false
in compartment: 570138
has only substance units: false
constant: false
type: Species
initial amount: NaN
is: VANILLIN
is: C00755
name: vanillin

597248
stoichiometry: 1.0
species: M TDP LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXNIM DASH 5788
product: 585097
product: 585109
reactant: 585073
notes: GENE_ASSOCIATION: ACIAD1709
fast: false
reactant: 585085
name: transport of p-hydroxybenzoate [extraorganism;cytosol](secondary symport)
reversible: true
type: Reaction
is: TRANS-RXNIM-5788

601948
stoichiometry: 1.0
species: M 4 DASH PHOSPHOPANTOTHENOYLCYSTEINE LBRACKET C RBRACKET
type: SpeciesReference

600416
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

M L DASH 1 DASH PHOSPHATIDYL DASH ETHANOLAMINE LBRACKET C RBRACKET
name: generic l-1-phosphatidyl-ethanolamine
initial amount: NaN
initial concentration: NaN
constant: false
is: C00350
is: L-1-PHOSPHATIDYL-ETHANOLAMINE
boundary condition: false
in compartment: 570138
type: Species
has only substance units: false

M ADENOSINE LBRACKET E RBRACKET
is: ADENOSINE
type: Species
boundary condition: false
initial amount: NaN
has only substance units: false
is: C00212
in compartment: 570126
is: adn
initial concentration: NaN
constant: false
name: adenosine

594200
stoichiometry: 1.0
species: M CPD DASH 104 LBRACKET P RBRACKET
type: SpeciesReference

615044
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

R RXNIM DASH 6094
product: 573831
product: 573819
reactant: 573807
notes: GENE_ASSOCIATION: ACIAD1726
is: RXNIM-6094
fast: false
reversible: true
name: 3,4-dihydroxyphenyl-beta-hydroxypropionyl-coa lyase
type: Reaction

577082
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

582774
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

R C14 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
fast: false
is: 3-OXOACYL-ACP-REDUCT-RXN
reactant: 583960
name: 3oxoacyl-acp reductase (c14:0)
reactant: 583973
product: 583999
is: 3OAR140
type: Reaction
product: 583986
notes: GENE_ASSOCIATION: ACIAD0871
reversible: false

615932
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

616065
reactant: 616077
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of deoxyuridine
type: Reaction

592294
stoichiometry: 1.0
species: M CHARGED DASH CYS DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

613206
reactant: 613219
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-ornithine
type: Reaction

603730
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

591476
stoichiometry: 1.0
species: M D DASH SERINE LBRACKET C RBRACKET
type: SpeciesReference

596093
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET
type: SpeciesReference

R IMPCYCLOHYDROLASE DASH RXN
is: IMPCYCLOHYDROLASE-RXN
fast: false
reactant: 596009
product: 596021
notes: GENE_ASSOCIATION: ACIAD2447
name: imp cyclohydrolase
reversible: true
reactant: 595997
type: Reaction
is: IMPC

602611
stoichiometry: 1.0
species: M GLYCERALD LBRACKET C RBRACKET
type: SpeciesReference

R DXPREDISOM DASH RXN
product: 611749
is: DXPRIi
reactant: 611725
fast: false
is: DXPREDISOM-RXN
type: Reaction
product: 611761
reactant: 611737
notes: GENE_ASSOCIATION: ACIAD1376
reversible: true
name: 1-deoxy-d-xylulose reductoisomerase

M BISOHMYR DASH GLUCOSAMINYL DASH 1P LBRACKET C RBRACKET
boundary condition: false
constant: false
is: lipidX
has only substance units: false
is: C04824
initial concentration: NaN
type: Species
in compartment: 570138
initial amount: NaN
name: 2,3-bis(3-hydroxymyristoyl)-beta-d-glucosaminyl 1-phosphate
is: BISOHMYR-GLUCOSAMINYL-1P

601537
stoichiometry: 1.0
species: M 5 DASH METHYL DASH THF LBRACKET C RBRACKET
type: SpeciesReference

577431
stoichiometry: 1.0
species: M D DASH ERYTHRO DASH IMIDAZOLE DASH GLYCEROL DASH P LBRACKET C RBRACKET
type: SpeciesReference

576117
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

597855
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

574240
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH SHIKIMATE
product: 580141
reactant: 580128
notes: GENE_ASSOCIATION: ACIAD1715 or ACIAD2984
is: RXNIM-6197
is: SKMtex
fast: false
reversible: true
name: transport of shikimate [extraorganism;periplasm](passive)
type: Reaction

M ADIPATE LBRACKET C RBRACKET
name: adipate
type: Species
has only substance units: false
is: C06104
initial concentration: NaN
constant: false
in compartment: 570138
is: ADIPATE
boundary condition: false
initial amount: NaN

598755
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

599586
stoichiometry: 1.0
species: M 2 DASH OCTAPRENYL DASH 6 DASH METHOXYPHENOL LBRACKET C RBRACKET
type: SpeciesReference

M HOMO DASH SER LBRACKET C RBRACKET
is: hom-L
has only substance units: false
constant: false
in compartment: 570138
name: homoserine
type: Species
is: HOMO-SER
is: C00263
boundary condition: false
initial concentration: NaN
initial amount: NaN

589211
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

606510
stoichiometry: 1.0
species: 570559
type: SpeciesReference

R TRANS DASH RXN DASH 242A
type: Reaction
is: HOMt2pp
is: TRANS-RXN-242A
product: 579151
notes: GENE_ASSOCIATION: ACIAD0173 or ACIAD3166
product: 579163
reversible: false
name: transport of homoserine [cytosol;extraorganism](secondary antiport)
reactant: 579139
reactant: 579127
fast: false

M DEHYDROQUINATE LBRACKET P RBRACKET
is: 3dhq
name: 3-dehydroquinate
is: DEHYDROQUINATE
initial amount: NaN
initial concentration: NaN
boundary condition: false
is: C00944
constant: false
type: Species
in compartment: 570114
has only substance units: false

570643
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-tetradec-4-enoate
type: Species

614984
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

603621
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

R DIHYDROOROT DASH RXN
product: 583303
fast: false
is: DHORTS
type: Reaction
reversible: true
is: DIHYDROOROT-RXN
notes: GENE_ASSOCIATION: ACIAD1150 or ACIAD1419
reactant: 583291
reactant: 583279
name: dihydroorotase

589151
stoichiometry: 0.9208
species: 570366
type: SpeciesReference

582472
stoichiometry: 1.0
species: M ISOCHORISMATE LBRACKET C RBRACKET
type: SpeciesReference

613302
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

592210
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

593198
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

601682
stoichiometry: 1.0
species: M 2 DASH PG LBRACKET C RBRACKET
type: SpeciesReference

611785
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

618068
stoichiometry: 1.0
species: 570727
type: SpeciesReference

598767
stoichiometry: 1.0
species: M COUMARATE LBRACKET C RBRACKET
type: SpeciesReference

582290
stoichiometry: 1.0
species: M C14 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

582182
reactant: 582194
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of d-serine
type: Reaction

M AMINO DASH RIBOSYLAMINO DASH 1H DASH 3H DASH PYR DASH DIONE LBRACKET C RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
name: 5-amino-6-ribitylamino-2,4(1h,3h)-pyrimidinedione
has only substance units: false
is: 4r5au
in compartment: 570138
constant: false
boundary condition: false
is: AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE
is: C04732

M 4 DASH AMINO DASH BUTYRATE LBRACKET E RBRACKET
constant: false
in compartment: 570126
is: C00334
name: 4-aminobutyrate
is: 4abut
type: Species
initial concentration: NaN
boundary condition: false
initial amount: NaN
is: 4-AMINO-BUTYRATE
has only substance units: false

R C12 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
is: 3OAR120
product: 580798
fast: false
notes: GENE_ASSOCIATION: ACIAD0871
reversible: false
type: Reaction
is: 3-OXOACYL-ACP-REDUCT-RXN
reactant: 580762
reactant: 580774
product: 580786
name: 3oxoacyl-acp reductase (c12:0)

R TRANS DASH RXNIM DASH 5786
product: 585314
reactant: 585302
name: transport of malonate [extraorganism;cytosol](secondary symport)
is: TRANS-RXNIM-5786
fast: false
notes: GENE_ASSOCIATION: ACIAD1760 and ACIAD1761
reactant: 585290
type: Reaction
reversible: true
product: 585326

R P DASH PANTOCYSLIG DASH RXN
reversible: true
reactant: 601912
reactant: 601924
fast: false
name: phosphopantothenate--cysteine ligase
type: Reaction
is: P-PANTOCYSLIG-RXN
is: PPNCL2
notes: GENE_ASSOCIATION: ACIAD3125
product: 601936
product: 601960
reactant: 601900
product: 601948

591319
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH GUANOSINE
name: transport of guanosine [extraorganism;cytosol](secondary symport)
reactant: 592910
notes: GENE_ASSOCIATION: ACIAD2389
reversible: false
is: RXNIM-6217
type: Reaction
product: 592946
product: 592934
fast: false
is: GSNt2pp
reactant: 592922

M 3 DASH KETOBUTYRATE LBRACKET C RBRACKET
has only substance units: false
name: acetoacetate
in compartment: 570138
is: acac
constant: false
is: C00164
initial concentration: NaN
type: Species
boundary condition: false
initial amount: NaN
is: 3-KETOBUTYRATE

R C12 COLON 0 DASH 3OXOCOA DASH THIOLASE DASH RXN
type: Reaction
reactant: 577190
reversible: true
fast: false
name: 3oxoacyl-coa thiolase (c12:0)
product: 577226
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
is: KAT5
is: KETOACYLCOATHIOL-RXN
reactant: 577202
product: 577214

593837
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

R NACGLCTRANS DASH RXN
is: NACGLCTRANS-RXN
product: 596237
notes: GENE_ASSOCIATION: ACIAD3517
reactant: 596201
fast: false
reversible: false
reactant: 596213
name: udp-n-acetylglucosamine:n-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase
is: UAGPT3
product: 596225
type: Reaction

M OH DASH MYRISTOYL LBRACKET C RBRACKET
type: Species
has only substance units: false
name: udp-2,3-bis(3-hydroxymyristoyl)glucosamine
initial amount: NaN
is: C04652
boundary condition: false
is: u23ga
constant: false
in compartment: 570138
is: OH-MYRISTOYL
initial concentration: NaN

594297
stoichiometry: 1.0
species: M DEOXYINOSINE LBRACKET C RBRACKET
type: SpeciesReference

612653
stoichiometry: 1.0
species: M 2 DASH ACETO DASH LACTATE LBRACKET C RBRACKET
type: SpeciesReference

591463
stoichiometry: 1.0
species: M D DASH SERINE LBRACKET E RBRACKET
type: SpeciesReference

595080
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

608567
stoichiometry: 0.07
species: M CHARGED DASH LEU DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

616779
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXNIM DASH 5742
notes: GENE_ASSOCIATION: ACIAD2449 and ACIAD2450 and ACIAD2451
product: 606486
reversible: false
reactant: 606462
is: METabcpp
type: Reaction
reactant: 606450
product: 606498
product: 606474
fast: false
reactant: 606438
name: transport of l-methionine [extraorganism;cytosol](primary active atp)
is: TRANS-RXNIM-5742

611713
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET
type: SpeciesReference

571894
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

609570
stoichiometry: 2.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

607422
stoichiometry: 0.08
species: M UNDECAPRENYL DASH DIPHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

574554
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

606269
stoichiometry: 1.0
species: M DTDP DASH DEOH DASH DEOXY DASH GLUCOSE LBRACKET C RBRACKET
type: SpeciesReference

586374
stoichiometry: 1.0
species: M C14 COLON 0 DASH ACP LBRACKET C RBRACKET
type: SpeciesReference

601513
stoichiometry: 1.0
species: M GLUCONATE LBRACKET E RBRACKET
type: SpeciesReference

604295
stoichiometry: 1.0
species: M C1 LBRACKET C RBRACKET
type: SpeciesReference

597031
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

596502
stoichiometry: 1.0
species: M FUM LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH SUC
is: TRANS-RXN-121
notes: GENE_ASSOCIATION: ACIAD2227
fast: false
type: Reaction
reversible: false
product: 583459
reactant: 583435
product: 583471
name: transport of succinate [extraorganism;cytosol](secondary symport)
reactant: 583447

588322
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

605571
stoichiometry: 1.0
species: 570535
type: SpeciesReference

579693
stoichiometry: 1.0
species: M C10 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

M AMINO DASH OH DASH HYDROXYMETHYL DASH DIHYDROPTERIDINE LBRACKET C RBRACKET
is: C01300
initial amount: NaN
in compartment: 570138
name: 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine
initial concentration: NaN
constant: false
boundary condition: false
has only substance units: false
is: AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE
is: 2ahhmp
type: Species

583327
stoichiometry: 1.0
species: M FRUCTOSE DASH 6P LBRACKET C RBRACKET
type: SpeciesReference

570547
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-hydroxytetradec-4-enoyl-coa
type: Species

R KDPGALDOL DASH RXN
product: 580834
fast: false
notes: GENE_ASSOCIATION: ACIAD0543
product: 580822
reactant: 580810
reversible: true
name: 2-dehydro-3-deoxyphosphogluconate aldolase
type: Reaction
is: KDPGALDOL-RXN
is: EDA

576852
stoichiometry: 1.0
species: M CYS LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH CIT DASH MFS
reversible: true
name: transport of citrate [extraorganism;cytosol](secondary symport)
fast: false
is: TRANS-RXNIM-5924
product: 588430
product: 588442
reactant: 588406
notes: GENE_ASSOCIATION: ACIAD0395 or ACIAD1541
type: Reaction
reactant: 588418

R ERYTH4PDEHYDROG DASH RXN
notes: GENE_ASSOCIATION: ACIAD1255
reactant: 608241
type: Reaction
is: ERYTH4PDEHYDROG-RXN
product: 608253
is: E4PD
product: 608265
reactant: 608229
fast: false
name: d-erythrose 4-phosphate dehydrogenase
reactant: 608217
reversible: true

579994
stoichiometry: 1.0
species: M TAURINE LBRACKET C RBRACKET
type: SpeciesReference

589427
stoichiometry: 1.0
species: M DEHYDROQUINATE LBRACKET C RBRACKET
type: SpeciesReference

577996
stoichiometry: 1.0
species: M C8 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

590958
stoichiometry: 1.0
species: M CPD DASH 245 LBRACKET C RBRACKET
type: SpeciesReference

593789
stoichiometry: 1.0
species: M PROTOHEME LBRACKET C RBRACKET
type: SpeciesReference

580882
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

572423
stoichiometry: 1.0
species: M MESO DASH DIAMINOPIMELATE LBRACKET C RBRACKET
type: SpeciesReference

R UDP DASH NACMUR DASH ALA DASH LIG DASH RXN
fast: false
type: Reaction
product: 584917
is: UAMAS
reactant: 584869
name: udp-n-acetylmuramate--alanine ligase
reversible: false
product: 584893
notes: GENE_ASSOCIATION: ACIAD3516
is: UDP-NACMUR-ALA-LIG-RXN
reactant: 584857
reactant: 584881
product: 584905

571112
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: AFATTYACID_FREE_W
type: Species

615344
stoichiometry: 1.0
species: M SER LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 302 LBRACKET E RBRACKET
is: asp-D
initial amount: NaN
is: CPD-302
boundary condition: false
in compartment: 570126
is: C00402
has only substance units: false
constant: false
type: Species
name: d-aspartate
initial concentration: NaN

581014
stoichiometry: 1.0
species: M N DASH ALPHA DASH ACETYLORNITHINE LBRACKET C RBRACKET
type: SpeciesReference

584677
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

M PROPIONATE LBRACKET E RBRACKET
initial amount: NaN
boundary condition: false
is: C00163
constant: false
type: Species
has only substance units: false
is: PROPIONATE
is: ppa
name: propionate
initial concentration: NaN
in compartment: 570126

613061
stoichiometry: 0.2
species: 570559
type: SpeciesReference

578164
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M ACP LBRACKET C RBRACKET
type: Species
has only substance units: false
is: C00229
is: ACP
initial amount: NaN
in compartment: 570138
constant: false
initial concentration: NaN
name: acyl carrier protein
boundary condition: false

579055
stoichiometry: 1.0
species: M 2 DASH PG LBRACKET C RBRACKET
type: SpeciesReference

590017
stoichiometry: 1.0
species: M C18 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

R 6 PERIOD 3 PERIOD 5 PERIOD 6 DASH RXN
reactant: 590825
reactant: 590837
is: 6.3.5.6-RXN
type: Reaction
fast: false
product: 590861
product: 590885
product: 590873
notes: GENE_ASSOCIATION: ACIAD0822 and ACIAD0823 and ACIAD0824
reversible: false
product: 590897
reactant: 590849
name: asparaginyl-trna synthetase (glutamine-hydrolyzing)

R R142 DASH RXN
notes: GENE_ASSOCIATION: ACIAD2903
reactant: 572916
is: R142-RXN
reactant: 572904
product: 572928
product: 572940
type: Reaction
name: 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase
reversible: false
fast: false

608253
stoichiometry: 1.0
species: M ERYTHRONATE DASH 4P LBRACKET C RBRACKET
type: SpeciesReference

R THIOREDOXIN DASH REDUCT DASH NADPH DASH RXN
reactant: 594563
product: 594575
notes: GENE_ASSOCIATION: ACIAD0890
fast: false
name: thioredoxin reductase (nadph)
product: 594587
reactant: 594551
reversible: true
type: Reaction
is: THIOREDOXIN-REDUCT-NADPH-RXN
is: TRDR

590005
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

578200
stoichiometry: 1.0
species: M GLYCOLLATE LBRACKET C RBRACKET
type: SpeciesReference

M DI DASH H DASH OROTATE LBRACKET C RBRACKET
boundary condition: false
initial concentration: NaN
is: C00337
name: dihydroorotate
constant: false
is: dhor-S
initial amount: NaN
type: Species
has only substance units: false
is: DI-H-OROTATE
in compartment: 570138

596839
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

612725
stoichiometry: 1.0
species: M KDO DASH 8P LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 761 LBRACKET C RBRACKET
has only substance units: false
name: 2-carboxy-2,5-dihydro-5-oxofuran-2-acetate
constant: false
in compartment: 570138
is: C01278
is: CPD-761
type: Species
initial concentration: NaN
is: 2c25dho
initial amount: NaN
boundary condition: false

605703
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

M FARNESYL DASH PP LBRACKET C RBRACKET
has only substance units: false
boundary condition: false
constant: false
initial amount: NaN
name: trans, trans-farnesyl diphosphate
is: C00448
initial concentration: NaN
is: FARNESYL-PP
in compartment: 570138
type: Species
is: frdp

M C12 COLON 0 LBRACKET E RBRACKET
has only substance units: false
type: Species
initial concentration: NaN
is: ddca
boundary condition: false
constant: false
in compartment: 570126
name: dodecanoate
is: DODECANOATE
is: C02679
initial amount: NaN

M UMP LBRACKET C RBRACKET
is: UMP
is: ump
name: ump
constant: false
initial concentration: NaN
initial amount: NaN
is: C00105
has only substance units: false
type: Species
boundary condition: false
in compartment: 570138

580370
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

614338
stoichiometry: 1.0
species: M C6 COLON 0 DASH CARBOXYCOA LBRACKET C RBRACKET
type: SpeciesReference

599045
stoichiometry: 1.0
species: M D DASH GLUCARATE LBRACKET E RBRACKET
type: SpeciesReference

R NAD DASH KIN DASH RXN
fast: false
name: nad(+) kinase
product: 578344
notes: GENE_ASSOCIATION: ACIAD2231
is: NADK
product: 578332
reversible: true
is: NAD-KIN-RXN
reactant: 578308
reactant: 578320
type: Reaction

R TRANS DASH RXN DASH 57
product: 609316
is: TRANS-RXN-57
is: ABUTt2pp
type: Reaction
reversible: false
reactant: 609291
fast: false
name: transport of 4-aminobutyrate [extraorganism;cytosol](secondary symport)
product: 609304
notes: GENE_ASSOCIATION: ACIAD3448
reactant: 609279

578056
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

596947
stoichiometry: 1.0
species: M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET
type: SpeciesReference

M TREHALOSE LBRACKET C RBRACKET
initial concentration: NaN
in compartment: 570138
is: tre
is: TREHALOSE
initial amount: NaN
boundary condition: false
name: trehalose
type: Species
constant: false
is: C01083
has only substance units: false

612314
stoichiometry: 1.0
species: M DEAMIDO DASH NAD LBRACKET C RBRACKET
type: SpeciesReference

572699
stoichiometry: 1.0
species: M URIDINE LBRACKET E RBRACKET
type: SpeciesReference

585169
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

584064
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

582074
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

598344
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

584125
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

595949
stoichiometry: 1.0
species: 570402
type: SpeciesReference

599874
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

585013
stoichiometry: 1.0
species: M NITRITE LBRACKET E RBRACKET
type: SpeciesReference

R C14 COLON 1 LPAREN C5 RPAREN DASH 3OXOACP DASH SYNTHASE DASH RXN
reactant: 583568
reversible: false
reactant: 583556
name: 3oxoacyl-acp synthase (c14:1(c5))
type: Reaction
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
product: 583580
product: 583592
is: 3-OXOACYL-ACP-SYNTH-RXN
fast: false
product: 583604

584785
stoichiometry: 0.202
species: M DGTP LBRACKET C RBRACKET
type: SpeciesReference

607531
stoichiometry: 0.08
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

R C10 COLON 0 DASH 2ENOYLACP DASH REDUCTASE DASH RXN
name: 2enoyl-acp reductase (c10:0)
reactant: 581677
notes: GENE_ASSOCIATION: ACIAD3116
type: Reaction
is: ENOYL-ACP-REDUCT-NADH-RXN
reactant: 581689
is: EAR100x
reversible: false
product: 581701
product: 581713
fast: false

582557
stoichiometry: 1.0
species: M ETHANOL DASH AMINE LBRACKET C RBRACKET
type: SpeciesReference

595720
stoichiometry: 1.0
species: M UTP LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH 58
product: 608894
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0700
is: LYSt2pp
reactant: 608869
is: TRANS-RXN-58
name: transport of l-lysine [extraorganism;cytosol](secondary symport)
reactant: 608857
reversible: false
fast: false
product: 608881

R 4OHBENZOATE DASH OCTAPRENYLTRANSFER DASH RXN
is: HBZOPT
reversible: true
product: 588622
product: 588634
name: hydroxybenzoate octaprenyltransferase
reactant: 588598
is: 4OHBENZOATE-OCTAPRENYLTRANSFER-RXN
reactant: 588610
notes: GENE_ASSOCIATION: ACIAD2455
type: Reaction
fast: false

586290
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET
type: SpeciesReference

603513
stoichiometry: 1.0
species: M L DASH 1 DASH PHOSPHATIDYL DASH ETHANOLAMINE LBRACKET C RBRACKET
type: SpeciesReference

613410
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

580774
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

608458
stoichiometry: 0.03
species: M CHARGED DASH ARG DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

593728
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET
type: SpeciesReference

601876
stoichiometry: 1.0
species: M CIT LBRACKET C RBRACKET
type: SpeciesReference

M L DASH GAMMA DASH GLUTAMYLCYSTEINE LBRACKET C RBRACKET
is: L-GAMMA-GLUTAMYLCYSTEINE
is: glucys
in compartment: 570138
has only substance units: false
type: Species
constant: false
name: l-gamma-glutamylcysteine
initial concentration: NaN
boundary condition: false
is: C00669
initial amount: NaN

602996
stoichiometry: 1.0
species: 570883
type: SpeciesReference

570799
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans-pent-2-enoyl-coa
type: Species

589103
stoichiometry: 1.0
species: M QUINATE LBRACKET E RBRACKET
type: SpeciesReference

591982
stoichiometry: 1.0
species: M FRUCTOSE DASH 16 DASH DIPHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

574132
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

588478
stoichiometry: 1.0
species: M CHLOROGENATE LBRACKET P RBRACKET
type: SpeciesReference

M CARBAMYUL DASH L DASH ASPARTATE LBRACKET C RBRACKET
is: cbasp
initial concentration: NaN
initial amount: NaN
constant: false
is: CARBAMYUL-L-ASPARTATE
name: carbamoyl-l-aspartate
boundary condition: false
in compartment: 570138
type: Species
is: C00438
has only substance units: false

584113
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

585424
stoichiometry: 1.0
species: M PROPIONYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

583219
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET
type: SpeciesReference

R GPPSYN DASH RXN
product: 588995
product: 589007
name: dimethylallyltransferase
fast: false
reactant: 588983
type: Reaction
reversible: true
reactant: 588971
is: GPPSYN-RXN
notes: GENE_ASSOCIATION: ACIAD2968 or ACIAD2940 or ACIAD1374
is: DMATT

586482
stoichiometry: 1.0
species: M INOSINE LBRACKET C RBRACKET
type: SpeciesReference

573435
stoichiometry: 1.0
species: M OCTAPRENYL DASH METHYL DASH METHOXY DASH BENZQ LBRACKET C RBRACKET
type: SpeciesReference

M D DASH GLUCOSAMINE DASH 6 DASH P LBRACKET C RBRACKET
is: gam6p
constant: false
initial amount: NaN
boundary condition: false
has only substance units: false
in compartment: 570138
name: d-glucosamine-6-phosphate
initial concentration: NaN
is: C00352
is: D-GLUCOSAMINE-6-P
type: Species

609087
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: SpeciesReference

586759
stoichiometry: 1.0
species: M CPD DASH 335 LBRACKET E RBRACKET
type: SpeciesReference

579344
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

R PROLDEHYDROG DASH RXN
product: 587144
reactant: 587120
product: 587156
fast: false
is: PROD2
is: PROLDEHYDROG-RXN
reversible: false
notes: GENE_ASSOCIATION: ACIAD1646
reactant: 587132
name: proline dehydrogenase
type: Reaction

601005
stoichiometry: 1.0
species: M CPD0 DASH 181 LBRACKET C RBRACKET
type: SpeciesReference

616887
stoichiometry: 1.0
species: M D DASH GLUCOSAMINE DASH 6 DASH P LBRACKET C RBRACKET
type: SpeciesReference

606726
stoichiometry: 1.0
species: M CARBOXYPHENYLAMINO DASH DEOXYRIBULOSE DASH P LBRACKET C RBRACKET
type: SpeciesReference

570823
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-OHACYL-ACP_LPS
type: Species

R 3 DASH DEHYDROQUINATE DASH SYNTHASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD3353
type: Reaction
reactant: 612952
name: 3-dehydroquinate synthase
product: 612977
is: DHQS
reversible: false
product: 612965
is: 3-DEHYDROQUINATE-SYNTHASE-RXN
fast: false

R C16 COLON 0 DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
reactant: 614015
notes: GENE_ASSOCIATION: ACIAD1381
product: 614039
name: 3hydroxyacyl-acp dehydratase (c16:0)
fast: false
is: 3HAD160
reversible: false
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
product: 614027
type: Reaction

594648
stoichiometry: 1.0
species: M C8 COLON 0 DASH COA LBRACKET C RBRACKET
type: SpeciesReference

R BHBDCLOS DASH RXN
product: 606822
reversible: false
type: Reaction
product: 606834
reactant: 606810
is: BHBDCLOS-RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
name: 3-hydroxyacyl-coa dehydrogenase
is: HACD1i
reactant: 606798

R TRANS DASH RXN DASH SUBERATE
name: transport of suberate [extraorganism;cytosol](secondary symport)
fast: false
notes: GENE_ASSOCIATION: ACIAD1694
reactant: 596382
is: TRANS-RXNIM-5912
product: 596406
reactant: 596370
type: Reaction
reversible: true
product: 596394

585229
stoichiometry: 1.0
species: M GLYOX LBRACKET C RBRACKET
type: SpeciesReference

603272
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

583934
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

570438
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: BUTYRIC_ACID
type: Species

588046
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

576743
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET
type: SpeciesReference

598272
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

R ADENOSYLHOMOCYSTEINASE DASH RXN
type: Reaction
product: 592814
is: AHC
is: ADENOSYLHOMOCYSTEINASE-RXN
reactant: 592790
notes: GENE_ASSOCIATION: ACIAD2282
reversible: false
product: 592802
reactant: 592777
fast: false
name: adenosylhomocysteinase

618176
reactant: 618188
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of acetate
type: Reaction

570210
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans,cis-octadec-2,9-enoyl-coa
type: Species

581244
stoichiometry: 1.0
species: M 2 DASH KETO DASH 3 DASH METHYL DASH VALERATE LBRACKET C RBRACKET
type: SpeciesReference

571450
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

590404
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

597392
stoichiometry: 1.0
species: M FMNH2 LBRACKET C RBRACKET
type: SpeciesReference

589043
stoichiometry: 1.0
species: M CHLOROGENATE LBRACKET P RBRACKET
type: SpeciesReference

616803
stoichiometry: 1.0
species: M 2 DASH KETO DASH 3 DASH METHYL DASH VALERATE LBRACKET C RBRACKET
type: SpeciesReference

574890
stoichiometry: 1.0
species: M DIHYDROXY DASH BUTANONE DASH P LBRACKET C RBRACKET
type: SpeciesReference

613398
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

572579
stoichiometry: 1.0
species: M GLYOX LBRACKET C RBRACKET
type: SpeciesReference

593042
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

601089
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

570859
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: generic wax esters
type: Species

606666
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET E RBRACKET
type: SpeciesReference

M THYMIDINE LBRACKET E RBRACKET
constant: false
initial amount: NaN
in compartment: 570126
name: thymidine
boundary condition: false
is: C00214
is: thymd
initial concentration: NaN
is: THYMIDINE
has only substance units: false
type: Species

589908
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

M SALICYLALDEHYDE LBRACKET C RBRACKET
is: SALICYLALDEHYDE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: salicylaldehyde
type: Species

M WATER LBRACKET P RBRACKET
in compartment: 570114
constant: false
initial concentration: NaN
type: Species
initial amount: NaN
boundary condition: false
has only substance units: false
is: h2o
is: C00001
name: h2o
is: WATER

598405
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET
type: SpeciesReference

618611
stoichiometry: 1.0
species: M CPD DASH 110 LBRACKET C RBRACKET
type: SpeciesReference

589319
stoichiometry: 1.0
species: M QUINOLINATE LBRACKET C RBRACKET
type: SpeciesReference

M DIOH DASH ISOVALERATE LBRACKET C RBRACKET
has only substance units: false
in compartment: 570138
type: Species
boundary condition: false
initial amount: NaN
is: C04272
initial concentration: NaN
name: 2,3-dihydroxy-isovalerate
constant: false
is: 23dhmb
is: DIOH-ISOVALERATE

R UNDECAPRENYL DASH DIPHOSPHATASE DASH RXN
notes: GENE_ASSOCIATION: ACIAD1642 or ACIAD0678
reactant: 590982
name: undecaprenyl-diphosphatase
type: Reaction
product: 591007
is: UNDECAPRENYL-DIPHOSPHATASE-RXN
product: 590994
is: UDCPDP
reactant: 590970
reversible: false
fast: false

M INOSINE LBRACKET C RBRACKET
type: Species
constant: false
has only substance units: false
is: ins
in compartment: 570138
is: INOSINE
boundary condition: false
is: C00294
name: inosine
initial amount: NaN
initial concentration: NaN

602972
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET
type: SpeciesReference

581918
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

614561
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

602358
product: 602382
reactant: 602370
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of so3-2 [cytosol;extraorganism](passive)
type: Reaction

R KDOTRANS DASH RXN
reactant: 615500
notes: GENE_ASSOCIATION: ACIAD3479
fast: false
is: MOAT
reversible: false
is: KDOTRANS-RXN
type: Reaction
name: 3-deoxy-d-manno-2-octulosonate transferase
reactant: 615512
product: 615524
product: 615536

613774
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

613810
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

R GARTRANSFORMYL2 DASH RXN
reactant: 571486
is: GART
reversible: false
reactant: 571462
product: 571510
product: 571498
is: GARTRANSFORMYL2-RXN
name: phosphoribosylglycinamide formyltransferase 2
notes: GENE_ASSOCIATION: ACIAD2078
reactant: 571474
product: 571522
fast: false
type: Reaction

602238
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

572735
stoichiometry: 1.0
species: M URIDINE LBRACKET C RBRACKET
type: SpeciesReference

605006
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

605643
stoichiometry: 1.0
species: 570811
type: SpeciesReference

R AMPSYN DASH RXN
name: adenylosuccinate lyase
is: ADSL1r
is: AMPSYN-RXN
type: Reaction
reactant: 596575
fast: false
reversible: true
product: 596599
notes: GENE_ASSOCIATION: ACIAD1219
product: 596587

R RXNIM DASH 6208
name: salicylacetate esterase
reversible: false
reactant: 576719
notes: GENE_ASSOCIATION: ACIAD1428
fast: false
type: Reaction
reactant: 576707
product: 576731
product: 576743
is: RXNIM-6208

591043
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

604331
stoichiometry: 1.0
species: M OROTIDINE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXNIM DASH 5847
reactant: 601634
fast: false
is: TRANS-RXNIM-5847
product: 601670
reactant: 601646
product: 601658
reversible: false
is: ALAt4pp
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0805
name: transport of l-alanine [extraorganism;cytosol](secondary symport)

603380
stoichiometry: 1.0
species: M XANTHOSINE LBRACKET C RBRACKET
type: SpeciesReference

576635
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

578742
stoichiometry: 1.0
species: M ARG LBRACKET C RBRACKET
type: SpeciesReference

586590
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET
type: SpeciesReference

571918
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R CTPSYN DASH RXN
product: 580226
type: Reaction
product: 580214
name: ctp synthase
reactant: 580189
fast: false
reactant: 580153
is: CTPS2
reactant: 580177
is: CTPSYN-RXN
product: 580202
notes: GENE_ASSOCIATION: ACIAD2003
product: 580238
reversible: false
reactant: 580165

575481
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

609836
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

M IMP LBRACKET C RBRACKET
is: IMP
constant: false
is: imp
initial amount: NaN
initial concentration: NaN
name: imp
is: C00130
boundary condition: false
type: Species
has only substance units: false
in compartment: 570138

606474
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

574517
stoichiometry: 1.0
species: M L DASH CITRULLINE LBRACKET C RBRACKET
type: SpeciesReference

M CATECHOL LBRACKET C RBRACKET
has only substance units: false
initial concentration: NaN
constant: false
name: catechol
is: C15571
type: Species
boundary condition: false
is: CATECHOL
initial amount: NaN
in compartment: 570138

614039
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

587805
stoichiometry: 1.0
species: M KDO DASH LIPID DASH IVA LBRACKET C RBRACKET
type: SpeciesReference

R 7KAPSYN DASH RXN
name: 8-amino-7-oxononanoate synthase
reversible: false
is: 7KAPSYN-RXN
product: 613749
is: AOXSr
type: Reaction
reactant: 613737
reactant: 613724
notes: GENE_ASSOCIATION: ACIAD0857
product: 613761
product: 613774
fast: false

616911
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

R RXNIM DASH 6207
reactant: 576310
fast: false
reactant: 576322
name: salicyl alcohol dehydrogenase
product: 576334
type: Reaction
is: RXNIM-6207
notes: GENE_ASSOCIATION: ACIAD1429 or ACIAD1578
product: 576346
reversible: true

611569
stoichiometry: 1.0
species: M CAFFEOYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

587745
stoichiometry: 1.0
species: M HYDROXY DASH METHYL DASH BUTENYL DASH DIP LBRACKET C RBRACKET
type: SpeciesReference

599165
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

R PEPSYNTH DASH RXN
reactant: 577322
reactant: 577334
reactant: 577310
name: pyruvate,water dikinase
product: 577358
notes: GENE_ASSOCIATION: ACIAD2423
product: 577346
is: PPS
product: 577370
reversible: false
is: PEPSYNTH-RXN
type: Reaction
fast: false

612508
stoichiometry: 1.0
species: M C4 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: SpeciesReference

R 3 PERIOD 6 PERIOD 1 PERIOD 41 DASH RXN
is: 3.6.1.41-RXN
type: Reaction
is: AP4AH
reactant: 611905
notes: GENE_ASSOCIATION: ACIAD3008
reactant: 611893
product: 611918
fast: false
name: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
reversible: false

584605
stoichiometry: 1.0
species: M N DASH ALPHA DASH ACETYLORNITHINE LBRACKET C RBRACKET
type: SpeciesReference

597635
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

R RIBOFLAVINSYNREDUC DASH RXN
reactant: 590150
name: 5-amino-6-(5- phosphoribosylamino)uracil reductase (htp reductase)
is: APRAUR
fast: false
reactant: 590162
notes: GENE_ASSOCIATION: ACIAD0247
product: 590186
type: Reaction
is: RIBOFLAVINSYNREDUC-RXN
product: 590174
reversible: true

592910
stoichiometry: 1.0
species: M GUANOSINE LBRACKET E RBRACKET
type: SpeciesReference

M DIHYDRO DASH DIOH DASH BENZOATE LBRACKET C RBRACKET
constant: false
in compartment: 570138
is: 23ddhb
initial concentration: NaN
is: DIHYDRO-DIOH-BENZOATE
initial amount: NaN
boundary condition: false
is: C04171
has only substance units: false
name: 2,3-dihydro-2,3-dihydroxybenzoate
type: Species

575166
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

577792
stoichiometry: 1.0
species: M 3 DASH KETOBUTYRATE LBRACKET E RBRACKET
type: SpeciesReference

583075
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

M 4 DASH HYDROXY DASH BENZYL DASH ALCOHOL LBRACKET C RBRACKET
is: 4-HYDROXY-BENZYL-ALCOHOL
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 4-hydroxybenzyl alcohol
type: Species

R KDOTRANS2 DASH RXN
reversible: false
is: KDOTRANS2-RXN
notes: GENE_ASSOCIATION: ACIAD3479
name: 3-deoxy-d-manno-octulosonic acid transferase
product: 587817
reactant: 587793
fast: false
product: 587829
type: Reaction
is: MOAT2
reactant: 587805

608037
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

572206
reactant: 572218
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 4-coumarate
type: Reaction

607290
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET
type: SpeciesReference

606377
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

571052
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 4-carboxy-3-hydroxybutanoyl-coa
type: Species

591115
stoichiometry: 0.056
species: M C14 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

594358
stoichiometry: 1.0
species: M N DASH SUCCINYLLL DASH 2 COMMA 6 DASH DIAMINOPIMELATE LBRACKET C RBRACKET
type: SpeciesReference

R RXNIM DASH 6099
product: 573519
reactant: 573507
reactant: 573495
notes: GENE_ASSOCIATION: ACIAD1726
is: RXNIM-6099
fast: false
reversible: true
name: caffeoyl-coa lyase
type: Reaction

572351
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: SpeciesReference

602551
stoichiometry: 2.0
species: M GLUTATHIONE LBRACKET C RBRACKET
type: SpeciesReference

604860
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET
type: SpeciesReference

581316
stoichiometry: 1.0
species: M 1 DASH AMINO DASH PROPAN DASH 2 DASH ONE DASH 3 DASH PHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 667 LBRACKET C RBRACKET
boundary condition: false
constant: false
has only substance units: false
is: achms
is: C01077
in compartment: 570138
initial concentration: NaN
is: CPD-667
type: Species
name: o-acetyl-l-homoserine
initial amount: NaN

571702
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

587457
stoichiometry: 1.0
species: M ETOH LBRACKET C RBRACKET
type: SpeciesReference

618260
stoichiometry: 1.0
species: M DEOXYCYTIDINE LBRACKET E RBRACKET
type: SpeciesReference

585929
stoichiometry: 1.0
species: M QUINATE LBRACKET P RBRACKET
type: SpeciesReference

610630
stoichiometry: 1.0
species: M OCTAPRENYL DASH DIPHOSPHATE LBRACKET C RBRACKET
type: SpeciesReference

583765
stoichiometry: 1.0
species: M P DASH HYDROXY DASH PHENYLPYRUVATE LBRACKET C RBRACKET
type: SpeciesReference

607808
stoichiometry: 1.0
species: M RIBOSE LBRACKET C RBRACKET
type: SpeciesReference

599646
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

M DUMP LBRACKET C RBRACKET
initial concentration: NaN
in compartment: 570138
name: dump
boundary condition: false
is: C00365
is: DUMP
type: Species
constant: false
is: dump
has only substance units: false
initial amount: NaN

R RXNIM DASH 6209
reactant: 576671
type: Reaction
is: RXNIM-6209
reversible: false
reactant: 576659
product: 576695
fast: false
product: 576683
name: 4-hydroxybenzylacetate esterase
notes: GENE_ASSOCIATION: ACIAD1428

579765
stoichiometry: 1.0
species: M CPD DASH 741 LBRACKET C RBRACKET
type: SpeciesReference

R GLYC3PDEHYDROGBIOSYN DASH RXN
is: GLYC3PDEHYDROGBIOSYN-RXN
reversible: true
reactant: 616234
notes: GENE_ASSOCIATION: ACIAD1317
type: Reaction
is: G3PD2
product: 616258
product: 616270
fast: false
reactant: 616246
name: glycerol-3-phosphate dehydrogenase (nad(p)+)

616234
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

616174
stoichiometry: 1.0
species: M HOMO DASH SER LBRACKET E RBRACKET
type: SpeciesReference

578670
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

573507
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

574818
stoichiometry: 1.0
species: M CYS LBRACKET C RBRACKET
type: SpeciesReference

573181
stoichiometry: 1.0
species: M D DASH ALANINE LBRACKET C RBRACKET
type: SpeciesReference

610533
stoichiometry: 1.0
species: M ARG LBRACKET C RBRACKET
type: SpeciesReference

M LYS LBRACKET C RBRACKET
initial concentration: NaN
in compartment: 570138
constant: false
has only substance units: false
is: lys-L
boundary condition: false
is: LYS
type: Species
name: l-lysine
is: C00047
initial amount: NaN

598115
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET
type: SpeciesReference

613182
stoichiometry: 0.022
species: M C14 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

594116
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

R C16 COLON 0 DASH 3OXOACP DASH SYNTHASE DASH RXN
name: 3oxoacyl-acp synthase (c16:0)
reactant: 606750
fast: false
reactant: 606738
is: 3-OXOACYL-ACP-SYNTH-RXN
type: Reaction
reversible: false
product: 606786
is: 3OAS160
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
product: 606774
product: 606762

612460
stoichiometry: 1.0
species: M UDP DASH OHMYR DASH GLUCOSAMINE LBRACKET C RBRACKET
type: SpeciesReference

607206
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: SpeciesReference

M 6 DASH CARBOXYHEXANOYL DASH COA LBRACKET C RBRACKET
constant: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
is: pmcoa
boundary condition: false
is: 6-CARBOXYHEXANOYL-COA
in compartment: 570138
type: Species
is: C01063
name: 6-carboxyhexanoyl-coa

571244
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: PROTEIN_W
type: Species

614888
stoichiometry: 1.0
species: M UDP LBRACKET C RBRACKET
type: SpeciesReference

580542
stoichiometry: 0.475
species: 570378
type: SpeciesReference

M KDO DASH 8P LBRACKET C RBRACKET
is: kdo8p
in compartment: 570138
initial amount: NaN
is: C04478
boundary condition: false
initial concentration: NaN
is: KDO-8P
type: Species
name: 3-deoxy-d-manno-octulosonate 8-p
has only substance units: false
constant: false

R 3 DASH OHACYL DASH ACP LPS DASH ASSEMBLY DASH RXN
product: 609534
reactant: 609521
reactant: 609509
notes: GENE_ASSOCIATION:
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
fast: false
reversible: true
name: generic hydroxyacyl-acp of lps assembly
type: Reaction

594092
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

606053
stoichiometry: 1.0
species: M 4 DASH HYDROXY DASH BENZYL DASH ALCOHOL LBRACKET C RBRACKET
type: SpeciesReference

M DAMP LBRACKET C RBRACKET
name: damp
type: Species
is: DAMP
boundary condition: false
initial amount: NaN
in compartment: 570138
is: damp
initial concentration: NaN
constant: false
is: C00360
has only substance units: false

587505
stoichiometry: 1.0
species: 570523
type: SpeciesReference

590632
stoichiometry: 1.0
species: M SUC DASH COA LBRACKET C RBRACKET
type: SpeciesReference

M CPD DASH 1136 LBRACKET C RBRACKET
type: Species
initial concentration: NaN
name: 2-methyl-cis-aconitate
is: 2mcacn
constant: false
is: C04225
in compartment: 570138
is: CPD-1136
boundary condition: false
initial amount: NaN
has only substance units: false

R ARGININE DASH DASH TRNA DASH LIGASE DASH RXN
product: 582978
fast: false
notes: GENE_ASSOCIATION: ACIAD0164
is: ARGTRS
type: Reaction
is: ARGININE--TRNA-LIGASE-RXN
product: 582954
reactant: 582930
product: 582966
name: arginine--trna ligase
reversible: false
reactant: 582918
reactant: 582942

576960
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

578260
stoichiometry: 1.0
species: M 3 DASH KETO DASH ADIPYL DASH COA LBRACKET C RBRACKET
type: SpeciesReference

599370
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: SpeciesReference

577587
stoichiometry: 1.0
species: 571196
type: SpeciesReference

589548
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET
type: SpeciesReference

618417
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: SpeciesReference

570294
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-hexadec-7-enoyl-coa
type: Species

R TREHALOSE6PSYN DASH RXN
reactant: 584701
reversible: false
notes: GENE_ASSOCIATION: ACIAD1774
fast: false
product: 584737
product: 584725
is: TRE6PS
name: alpha,alpha-trehalose-phosphate synthase (udp-forming)
reactant: 584713
type: Reaction
is: TREHALOSE6PSYN-RXN

574758
reactant: 574770
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of citrate
type: Reaction

604524
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET
type: SpeciesReference

M C18 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
is: 3hodcoa
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-hydroxyoctadecanoyl-coa
type: Species

R UDPGLUCEPIM DASH RXN
product: 575997
reactant: 575985
notes: GENE_ASSOCIATION: ACIAD1891 or ACIAD0102 or ACIAD0096
is: UDPGLUCEPIM-RXN
is: UDPG4E
fast: false
reversible: true
name: udp-glucose 4-epimerase
type: Reaction

R F16BDEPHOS DASH RXN
is: FBP
reactant: 584557
reversible: false
type: Reaction
product: 584569
fast: false
is: F16BDEPHOS-RXN
reactant: 584545
name: fructose-bisphosphatase
notes: GENE_ASSOCIATION: ACIAD2625
product: 584581

575865
stoichiometry: 1.0
species: M CHARGED DASH GLT DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

617103
stoichiometry: 1.0
species: M C16 COLON 0 LBRACKET C RBRACKET
type: SpeciesReference

575505
stoichiometry: 1.0
species: M N DASH ACETYL DASH D DASH GLUCOSAMINE DASH 1 DASH P LBRACKET C RBRACKET
type: SpeciesReference

596611
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

577418
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

599706
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

614248
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

584293
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET
type: SpeciesReference

R RXN0 DASH 5107
is: NTPP7
reactant: 575733
name: dttp pyrophosphorylase
product: 575757
product: 575745
fast: false
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3065
reactant: 575721
reversible: false

595248
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET
type: SpeciesReference

R TRANS DASH RXN DASH PRO
reactant: 616693
is: PROt2rpp
notes: GENE_ASSOCIATION: ACIAD1168
type: Reaction
product: 616718
reversible: false
reactant: 616705
name: transport of l-proline [extraorganism;cytosol](secondary symport)
is: TRANS-RXN-29
product: 616730
fast: false

611002
stoichiometry: 0.006
species: 571136
type: SpeciesReference

608664
stoichiometry: 0.05
species: M ILE DASH TRNAS LBRACKET C RBRACKET
type: SpeciesReference

R GLUCONOKIN DASH RXN
reactant: 587252
product: 587264
is: GLUCONOKIN-RXN
name: gluconokinase
reversible: true
reactant: 587241
product: 587276
is: GNK
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0545
fast: false

613640
stoichiometry: 1.0
species: M ACETYLSERINE LBRACKET C RBRACKET
type: SpeciesReference

609558
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET
type: SpeciesReference

R ALDHDEHYDROG DASH RXN
reactant: 599766
product: 599790
reactant: 599754
name: aminoacetaldehyde dehydrogenase
product: 599778
reversible: true
fast: false
reactant: 599742
is: ALDHDEHYDROG-RXN
notes: GENE_ASSOCIATION: ACIAD2018 or ACIAD2542
type: Reaction

571930
stoichiometry: 1.0
species: M C18 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: SpeciesReference

M 3 DASH KETOBUTYRATE LBRACKET E RBRACKET
boundary condition: false
is: acac
constant: false
is: 3-KETOBUTYRATE
initial concentration: NaN
is: C00164
initial amount: NaN
in compartment: 570126
has only substance units: false
name: acetoacetate
type: Species

614924
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET
type: SpeciesReference

586977
stoichiometry: 1.0
species: 570198
type: SpeciesReference

M C18 COLON 1 LPAREN C9 RPAREN LBRACKET E RBRACKET
initial concentration: NaN
has only substance units: false
is: C00712
boundary condition: false
is: OLEATE-CPD
in compartment: 570126
name: cis-octadec-9-enoate
constant: false
type: Species
initial amount: NaN

M TRANS DASH FERULOYL DASH COA LBRACKET C RBRACKET
type: Species
has only substance units: false
name: trans-feruloyl-coa
initial amount: NaN
is: TRANS-FERULOYL-COA
in compartment: 570138
initial concentration: NaN
boundary condition: false
constant: false
is: C00406

608930
stoichiometry: 1.0
species: M FORMATE LBRACKET C RBRACKET
type: SpeciesReference

591777
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

577286
reactant: 577298
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of cytosine
type: Reaction

588814
stoichiometry: 1.0
species: M UDP DASH GLUCOSE LBRACKET C RBRACKET
type: SpeciesReference

578597
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET
type: SpeciesReference

600836
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

597187
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET
type: SpeciesReference

609703
stoichiometry: 1.0
species: 570631
type: SpeciesReference

615620
stoichiometry: 1.0
species: M FORMATE LBRACKET C RBRACKET
type: SpeciesReference

593935
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET
type: SpeciesReference

590741
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET
type: SpeciesReference

610966
stoichiometry: 0.041
species: 570354
type: SpeciesReference

583435
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET
type: SpeciesReference

588971
stoichiometry: 1.0
species: M DELTA LPAREN 3 RPAREN DASH ISOPENTENYL DASH PP LBRACKET C RBRACKET
type: SpeciesReference

M DEOXYCYTIDINE LBRACKET E RBRACKET
initial concentration: NaN
type: Species
boundary condition: false
is: DEOXYCYTIDINE
in compartment: 570126
is: C00881
initial amount: NaN
name: deoxycytidine
constant: false
has only substance units: false
is: dcyt

595020
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET
type: SpeciesReference

580650
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET
type: SpeciesReference

618080
stoichiometry: 1.0
species: M DUDP LBRACKET C RBRACKET
type: SpeciesReference

R R223 DASH RXN
product: 602286
reversible: false
is: FACOAL80t2pp
reactant: 602226
reactant: 602238
product: 602274
is: R223-RXN
reactant: 602250
type: Reaction
fast: false
product: 602262
name: acyl coa transferase (c8:0)
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106

609631
stoichiometry: 1.0
species: M CPD DASH 592 LBRACKET E RBRACKET
type: SpeciesReference

612278
stoichiometry: 1.0
species: 571064
type: SpeciesReference

M C10 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
name: 3-oxodecanoyl-coa
has only substance units: false
is: C05265
boundary condition: false
type: Species
initial amount: NaN
initial concentration: NaN
constant: false
is: 3odcoa
in compartment: 570138

571352
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET
type: SpeciesReference

595659
stoichiometry: 1.0
species: M C6 COLON 2 LPAREN C2 COMMA C4 RPAREN LBRACKET E RBRACKET
type: SpeciesReference

607760
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET
type: SpeciesReference

571798
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET
type: SpeciesReference

616668
stoichiometry: 1.0
species: M AMINO DASH OH DASH HYDROXYMETHYL DASH DIHYDROPTERIDINE LBRACKET C RBRACKET
type: SpeciesReference

580418
stoichiometry: 1.0
species: M OCTAPRENYL DASH METHOXY DASH BENZOQUINONE LBRACKET C RBRACKET
type: SpeciesReference

584821
stoichiometry: 0.3087
species: 571160
type: SpeciesReference

602142
reactant: 602154
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of nicotinamide nucleotide
type: Reaction

585085
stoichiometry: 1.0
species: M 4 DASH HYDROXYBENZOATE LBRACKET E RBRACKET
type: SpeciesReference

578513
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: SpeciesReference

M CPDIM DASH 6118 LBRACKET C RBRACKET
is: CPDIM-6118
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3,4-dihydroxyphenylpropionyl-coa
type: Species

587000
stoichiometry: 1.0
species: M ISOCHORISMATE LBRACKET C RBRACKET
type: SpeciesReference

M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET
name: phosphoenolpyruvate
type: Species
is: pep
initial amount: NaN
in compartment: 570138
has only substance units: false
initial concentration: NaN
constant: false
is: PHOSPHO-ENOL-PYRUVATE
is: C00074
boundary condition: false