http://identifiers.org/biomodels.db/MODEL1308080003#_8e0a4545_086b_4f94_a0ba_478371d1ee46
stoichiometry: 1.0
species: metaid 1007
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#dd6fdd36_cc99_4f12_8762_6a2a5a9e3b97
stoichiometry: 1.0
species: metaid 1002
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#b244b726_68f9_4665_a5d9_a0a5cf5e671e
stoichiometry: 1.0
species: metaid 1002
type: SpeciesReference

metaid 2009
constant: true
value: 5.19753
name: unbinding rate of CI2 from OR3
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#_03665d89_d008_4b8c_a4ea_6b3703e2cd8b
stoichiometry: 1.0
species: metaid 1003
type: SpeciesReference

metaid 2029
constant: true
value: 0.0929
name: synthesis rate of Cro
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#_27fa34d8_90c3_4773_8e81_e07c0e94040f
stoichiometry: 1.0
species: metaid 1006
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_30cdfe48_2cb4_46f9_94e7_8eebbbaa76d5
stoichiometry: 1.0
species: metaid 1007
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_9cf1476e_3045_48ae_9bf4_e85b834e6ec8
stoichiometry: 1.0
species: metaid 1002
type: SpeciesReference

metaid 2019
constant: true
value: 0.00928
name: unbinding rate of Cro2 from OR3
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#_7e442ab8_dd9f_44ae_8641_9fbf8cfee968
stoichiometry: 1.0
species: metaid 1001
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_8c73e131_b0cc_4431_8bd9_c62873ea61dc
stoichiometry: 1.0
species: metaid 1014
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_958099e9_45cf_4c46_992f_c3ecb6edfd80
stoichiometry: 1.0
species: metaid 1003
type: SpeciesReference

MODEL1308080003
parameter: metaid 2001
species: metaid 1006
reaction: metaid_0000475
reaction: metaid_0000466
reaction: metaid_0000414
species: metaid 1011
reaction: metaid_0000467
reaction: metaid_0000101
parameter: metaid 2024
reaction: metaid_0000102
parameter: metaid 2025
parameter: metaid 2015
name: Cao2010 - Epigenetic state of lysogeny in phage lambda
reaction: metaid_0000202
reaction: metaid_0000437
reaction: metaid_0000438
parameter: metaid 2017
species: metaid 1003
parameter: metaid 2018
parameter: metaid 2008
parameter: metaid 2009
parameter: metaid 2028
reaction: metaid_0000441
reaction: metaid_0000431
reaction: metaid_0000432
reaction: metaid_0000423
reaction: metaid_0000422
area units: area
reaction: metaid_0000413
species: metaid 1009
species: metaid 1014
reaction: metaid_0000473
reaction: metaid_0000474
reaction: metaid_0000464
reaction: metaid_0000465
reaction: metaid_0000455
parameter: metaid 2022
species: metaid 1007
parameter: metaid 2023
parameter: metaid 2013
parameter: metaid 2014
parameter: metaid 2004
species: metaid 1012
reaction: metaid_0000471
reaction: metaid_0000201
reaction: metaid_0000436
curated: false
species: metaid 1001
parameter: metaid 2006
parameter: metaid 2007
reaction: metaid_0000469
species: metaid 1004
reaction: metaid_0000301
reaction: metaid_0000302
parameter: metaid 2027
reaction: metaid_0000421
reaction: metaid_0000411
reaction: metaid_0000412
compartment: metaid_1000001
reaction: metaid_0000472
reaction: metaid_0000462
reaction: metaid_0000463
reaction: metaid_0000453
reaction: metaid_0000454
reaction: metaid_0000444
reaction: metaid_0000445
reaction: metaid_0000435
species: metaid 1005
parameter: metaid 2021
parameter: metaid 2011
parameter: metaid 2012
parameter: metaid 2002
species: metaid 1010
parameter: metaid 2003
species: metaid 1008
notes: References: 1. Xiaomei Zhu, Lan Yin, Leroy Hood, David Galas and Ping Ao, Efficiency, Robustness and Stochasticity of Gene Regulatory networks in Systems biology: Lambda switch as a working example, 2006. 2. Adam Arkin, John Ross and Harley H. McAdams, Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells, 1998, Genetics, 149: 1633-1648. 3. GenBank sequence: NC_001416 is the whole genome sequence of phage lambda.
reaction: metaid_0000468
reaction: metaid_0000425
reaction: metaid_0000415
length unit: length

metaid_0000471
fast: false
type: Reaction
modifier: MODEL1308080003#
reversible: false

http://identifiers.org/biomodels.db/MODEL1308080003#_7eda05e7_3c2d_45c1_8a2b_c478805a890b
stoichiometry: 1.0
species: metaid 1006
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_37c8c577_e504_40cf_9ecd_8f3229cad1b6
stoichiometry: 1.0
species: metaid 1013
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_10f6a429_5a05_4c38_b961_64b1bca37700
stoichiometry: 1.0
species: metaid 1009
type: SpeciesReference

metaid 2017
constant: true
value: 0.23822
name: unbinding rate of Cro2 from OR2 with coop 2
type: Parameter

metaid_1000001
constant: true
size: 1.0
spatial dimensions: 3.0
type: Compartment

metaid 2018
constant: true
value: 0.14641
name: unbinding rate of Cro2 from OR2 with coop 3
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#_03f97d7c_c616_4350_a53b_02d9ecb70ff4
stoichiometry: 2.0
species: metaid 1005
type: SpeciesReference

metaid 2005
constant: true
value: 1.026
name: unbinding rate of CI2 from OR2
type: Parameter

metaid_0000443
fast: false
reversible: false
modifier: MODEL1308080003#
type: Reaction

http://identifiers.org/biomodels.db/MODEL1308080003#_655ffb37_53cc_4023_9d65_1c025bf28231
stoichiometry: 1.0
species: metaid 1006
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_37d8a354_aa11_499b_9a35_fed5e60855a4
stoichiometry: 1.0
species: metaid 1001
type: SpeciesReference

metaid 2006
constant: true
value: 0.01284
name: unbinding rate of CI2 from OR2 with coop 1
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#_26c726c2_2a64_412e_a0bf_12b972b2dee7
stoichiometry: 1.0
species: metaid 1013
type: SpeciesReference

metaid_0000442
modifier: MODEL1308080003#
type: Reaction
reversible: false
fast: false

http://identifiers.org/biomodels.db/MODEL1308080003#_75c84b65_79d4_44a3_b869_01d52d497722
stoichiometry: 1.0
species: metaid 1007
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#e49b1d3d_bf86_4f8e_bfc1_5804d0bdc13f
stoichiometry: 1.0
species: metaid 1011
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#a03fb183_2a6a_4342_8de2_6712e8306a7f
stoichiometry: 1.0
species: metaid 1002
type: SpeciesReference

metaid 2007
constant: true
value: 0.00928
name: unbinding rate of CI2 from OR2 with coop 2
type: Parameter

metaid_0000431
reversible: false
fast: false
type: Reaction
modifier: MODEL1308080003#

http://identifiers.org/biomodels.db/MODEL1308080003#dc94a18b_a477_428b_a3a0_71e19be9a10e
stoichiometry: 1.0
species: metaid 1001
type: SpeciesReference

metaid_0000441
type: Reaction
modifier: MODEL1308080003#
reversible: false
fast: false

http://identifiers.org/biomodels.db/MODEL1308080003#_27df168d_285e_44f9_a3b6_53c83069f75f
stoichiometry: 1.0
species: metaid 1004
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_3ae62ce0_0b20_413b_b10d_c31fad547d7a
stoichiometry: 1.0
species: metaid 1009
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_27ccdedb_f2af_459e_bd42_18d74dca6fed
stoichiometry: 1.0
species: metaid 1003
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#f2fef258_a88d_4ba9_8eec_e73188c35378
stoichiometry: 1.0
species: metaid 1002
type: SpeciesReference

metaid 1013
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_1000001
name: COR3
type: Species

http://identifiers.org/biomodels.db/MODEL1308080003#_65c266c3_b468_4144_8581_63189c6f9377
stoichiometry: 1.0
species: metaid 1002
type: SpeciesReference

metaid 2008
constant: true
value: 0.01284
name: unbinding rate of CI2 from OR2 with coop 3
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#_6ebf4112_d5cd_4619_8a1d_c506213fdab0
stoichiometry: 1.0
species: metaid 1012
type: SpeciesReference

metaid_0000202
modifier: MODEL1308080003#
reversible: false
type: Reaction
fast: false

metaid 1014
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_1000001
name: EmptySet
type: Species

http://identifiers.org/biomodels.db/MODEL1308080003#b45cce7c_2559_4fa7_9403_af509724ec3e
stoichiometry: 1.0
species: metaid 1002
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_989f9371_472f_403a_85c8_fae55ab5b56c
stoichiometry: 1.0
species: metaid 1012
type: SpeciesReference

metaid_0000413
fast: false
modifier: MODEL1308080003#
type: Reaction
reversible: false

metaid 2011
constant: true
value: 5.19753
name: unbinding rate of CI2 from OR3 with coop 2
type: Parameter

metaid 1011
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_1000001
name: COR1
type: Species

metaid 2021
constant: true
value: 0.01092
name: unbinding rate of Cro2 from OR3 with coop 2
type: Parameter

metaid_0000201
fast: false
modifier: MODEL1308080003#
reversible: false
type: Reaction

http://identifiers.org/biomodels.db/MODEL1308080003#_4fa7da7c_717e_40ff_98f8_df49dc7df755
stoichiometry: 1.0
species: metaid 1006
type: SpeciesReference

metaid 2001
constant: true
value: 0.021
name: binding rate of protein to DNA
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#_6cdb2dc0_74e5_4c8c_ba52_f775399519f2
stoichiometry: 1.0
species: metaid 1009
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_57aeec83_03c4_4b19_b407_41894b7dedba
stoichiometry: 1.0
species: metaid 1010
type: SpeciesReference

metaid_0000433
reversible: false
type: Reaction
modifier: MODEL1308080003#
fast: false

http://identifiers.org/biomodels.db/MODEL1308080003#_5a832b5b_4603_406f_afd5_35361f65cd81
stoichiometry: 1.0
species: metaid 1008
type: SpeciesReference

metaid 2012
constant: true
value: 0.08999
name: unbinding rate of Cro2 from OR1
type: Parameter

metaid_0000412
type: Reaction
reversible: false
modifier: MODEL1308080003#
fast: false

http://identifiers.org/biomodels.db/MODEL1308080003#eb8b4083_8722_4b71_9551_b7f320236425
stoichiometry: 1.0
species: metaid 1005
type: SpeciesReference

metaid 2022
constant: true
value: 0.05
name: association rate of CI monomer to dimer
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#f086499e_ad0f_4176_9786_8e174c93b2d4
stoichiometry: 1.0
species: metaid 1013
type: SpeciesReference

metaid 1012
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_1000001
name: COR2
type: Species

http://identifiers.org/biomodels.db/MODEL1308080003#_7c36a027_d0ca_457c_934f_9f11c1a394e6
stoichiometry: 1.0
species: metaid 1001
type: SpeciesReference

metaid 2002
constant: true
value: 0.03998
name: unbinding rate of CI2 from OR1
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#f5417184_5f7c_4f13_9201_9436b77f7af1
stoichiometry: 1.0
species: metaid 1007
type: SpeciesReference

metaid_0000432
reversible: false
fast: false
type: Reaction
modifier: MODEL1308080003#

metaid 2023
constant: true
value: 0.0307
name: association rate of Cro monomer to dimer
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#c03f2d32_5c88_4179_aa48_d9b82c86acd9
stoichiometry: 1.0
species: metaid 1013
type: SpeciesReference

metaid_0000425
type: Reaction
modifier: MODEL1308080003#
fast: false
reversible: false

metaid 2003
constant: true
value: 5.0E-4
name: unbinding rate of CI2 from OR1 with coop 1
type: Parameter

metaid_0000445
fast: false
modifier: MODEL1308080003#
reversible: false
type: Reaction

http://identifiers.org/biomodels.db/MODEL1308080003#c945c393_b5cb_4d85_8871_6be8ef63968a
stoichiometry: 1.0
species: metaid 1012
type: SpeciesReference

metaid_0000435
type: Reaction
reversible: false
modifier: MODEL1308080003#
fast: false

metaid_0000415
type: Reaction
reversible: false
fast: false
modifier: MODEL1308080003#

http://identifiers.org/biomodels.db/MODEL1308080003#a056f762_be7b_4353_9172_906ffb8c1271
stoichiometry: 1.0
species: metaid 1007
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#b8a2c6ac_b9d4_428a_9cbd_a5df465af52d
stoichiometry: 1.0
species: metaid 1012
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_85fb81b5_7e3f_47a6_b9fe_006106166e76
stoichiometry: 1.0
species: metaid 1006
type: SpeciesReference

metaid 2010
constant: true
value: 0.04702
name: unbinding rate of CI2 from OR3 with coop 1
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#f1982732_f83d_41f1_863e_be4f6787308a
stoichiometry: 1.0
species: metaid 1001
type: SpeciesReference

metaid 1010
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_1000001
name: ROR3
type: Species

metaid 2024
constant: true
value: 0.5
name: disassociation rate of dimer
type: Parameter

metaid_0000424
type: Reaction
reversible: false
fast: false
modifier: MODEL1308080003#

http://identifiers.org/biomodels.db/MODEL1308080003#_2f14a03c_017a_47a1_9730_4356c6ac8056
stoichiometry: 1.0
species: metaid 1006
type: SpeciesReference

metaid 2004
constant: true
value: 0.05531
name: unbinding rate of CI2 from OR1 with coop 2
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#e6dccd17_11df_4b17_9ec9_619c592719cf
stoichiometry: 1.0
species: metaid 1006
type: SpeciesReference

metaid_0000444
fast: false
type: Reaction
reversible: false
modifier: MODEL1308080003#

metaid_0000434
reversible: false
fast: false
type: Reaction
modifier: MODEL1308080003#

http://identifiers.org/biomodels.db/MODEL1308080003#_29d215a2_1127_424b_aef0_cc0934014c3b
stoichiometry: 1.0
species: metaid 1009
type: SpeciesReference

metaid_0000414
modifier: MODEL1308080003#
reversible: false
fast: false
type: Reaction

metaid_0000423
type: Reaction
fast: false
reversible: false
modifier: MODEL1308080003#

metaid 2025
constant: true
value: 7.0E-4
name: degradation rate of CI
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#_4e53f8f9_bd68_4fe0_b842_c41e679d9b1b
stoichiometry: 1.0
species: metaid 1008
type: SpeciesReference

metaid_0000437
type: Reaction
modifier: MODEL1308080003#
fast: false
reversible: false

http://identifiers.org/biomodels.db/MODEL1308080003#_94dff1e3_165b_4f58_a222_028c249325b5
stoichiometry: 1.0
species: metaid 1006
type: SpeciesReference

metaid 2015
constant: true
value: 0.6306
name: unbinding rate of Cro2 from OR2
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#_5f60e08f_e608_4c5e_84d1_3127e8c760cf
stoichiometry: 1.0
species: metaid 1011
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#d2a29d52_7cbf_4693_8f43_2c9de3593899
stoichiometry: 1.0
species: metaid 1012
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_248b4c91_251c_4fe1_8741_9e28c119fa16
stoichiometry: 1.0
species: metaid 1006
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#cb5f25ae_0c07_4af9_b912_3a7e8e20206e
stoichiometry: 1.0
species: metaid 1008
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#dbc0025d_8665_4873_9812_e755a54af3eb
stoichiometry: 1.0
species: metaid 1007
type: SpeciesReference

metaid_0000422
type: Reaction
modifier: MODEL1308080003#
reversible: false
fast: false

metaid 2026
constant: true
value: 0.0025
name: degradation rate of Cro
type: Parameter

metaid 2016
constant: true
value: 0.12448
name: unbinding rate of Cro2 from OR2 with coop 1
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#e25b664c_01ed_4d88_8982_91d3c12df208
stoichiometry: 1.0
species: metaid 1006
type: SpeciesReference

metaid_0000436
type: Reaction
modifier: MODEL1308080003#
reversible: false
fast: false

http://identifiers.org/biomodels.db/MODEL1308080003#_9fdf2715_c729_46f3_a43b_30beb51a5194
stoichiometry: 1.0
species: metaid 1009
type: SpeciesReference

metaid_0000421
type: Reaction
reversible: false
fast: false
modifier: MODEL1308080003#

metaid_0000411
reversible: false
fast: false
modifier: MODEL1308080003#
type: Reaction

metaid 2013
constant: true
value: 0.01776
name: unbinding rate of Cro2 from OR1 with coop 1
type: Parameter

metaid 2027
constant: true
value: 0.0069
name: synthesis rate of CI
type: Parameter

metaid_0000439
reversible: false
fast: false
modifier: MODEL1308080003#
type: Reaction

http://identifiers.org/biomodels.db/MODEL1308080003#_60627278_3eb5_4c25_8d6c_dbaf1cada840
stoichiometry: 1.0
species: metaid 1007
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_15647195_acd4_4614_b272_764c9744a276
stoichiometry: 1.0
species: metaid 1010
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_2d56b57d_cde0_463a_8295_893d0984b14a
stoichiometry: 1.0
species: metaid 1009
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http://identifiers.org/biomodels.db/MODEL1308080003#_5492ac0e_697f_4809_b38c_38ff484f489d
stoichiometry: 1.0
species: metaid 1010
type: SpeciesReference

metaid 1009
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_1000001
name: ROR2
type: Species

http://identifiers.org/biomodels.db/MODEL1308080003#_63823353_61cd_4f18_b6f0_ab55b529b3f9
stoichiometry: 1.0
species: metaid 1004
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_33bba9f9_c53d_41ee_bc95_14c66115f976
stoichiometry: 1.0
species: metaid 1001
type: SpeciesReference

metaid 2014
constant: true
value: 0.05531
name: unbinding rate of Cro2 from OR1 with coop 2
type: Parameter

metaid_0000438
type: Reaction
modifier: MODEL1308080003#
reversible: false
fast: false

metaid 2028
constant: true
value: 0.066
name: synthesis rate of CI with cooperativity
type: Parameter

http://identifiers.org/biomodels.db/MODEL1308080003#d9545b81_aeb6_47bd_ae65_861e2742321f
stoichiometry: 1.0
species: metaid 1003
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_8ebebe98_0978_462f_b5cf_255d5c35477d
stoichiometry: 1.0
species: metaid 1009
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http://identifiers.org/biomodels.db/MODEL1308080003#e98d5750_9f91_49c0_aac3_2c3f8ee4e37e
stoichiometry: 1.0
species: metaid 1012
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http://identifiers.org/biomodels.db/MODEL1308080003#_9a4655d7_295d_4a27_a837_95d4bf87ae9d
stoichiometry: 1.0
species: metaid 1006
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#c3083e5b_07d2_46a4_84d9_f340123c41c7
stoichiometry: 1.0
species: metaid 1004
type: SpeciesReference

metaid_0000301
type: Reaction
modifier: MODEL1308080003#
fast: false
reversible: true

metaid 1008
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_1000001
name: ROR1
type: Species

http://identifiers.org/biomodels.db/MODEL1308080003#_09ccd8b3_46b9_4e4b_aba1_e88c6b2160c8
stoichiometry: 1.0
species: metaid 1012
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#_6153a6ad_90b0_41fa_a46b_e9c9e8b34d53
stoichiometry: 1.0
species: metaid 1012
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1308080003#f2db8deb_9259_429f_b0e6_166ae4c88d42
stoichiometry: 1.0
species: metaid 1008
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http://identifiers.org/biomodels.db/MODEL1308080003#_99cbe8b9_ac0d_43fa_b2f3_b9164eb3ec29
stoichiometry: 1.0
species: metaid 1009
type: SpeciesReference

metaid 1007
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_1000001
name: C2
type: Species

metaid_0000302
modifier: MODEL1308080003#
type: Reaction
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