meta NAD
has only substance units: false
initial amount: NaN
constant: false
type: Species
is: C00003
in compartment: meta cell
boundary condition: false
is: SBO:0000247
is: CHEBI:15846
initial concentration: 1.50329030201531
name: NAD

meta ADH1
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.0409771277320022
initial amount: NaN
in compartment: meta cell
name: ADH1
type: Species

meta P2G
initial amount: NaN
has only substance units: false
initial concentration: 0.0169344770274836
is: C00631
is: SBO:0000247
type: Species
in compartment: meta cell
boundary condition: false
is: CHEBI:17835
name: 2-phosphoglycerate
constant: false

http://identifiers.org/biomodels.db/MODEL1303260000#_2109cdbf_71b8_45f6_8caa_04b78f9b811f
value: 0.785166666666667
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#f1e73d27_b3e3_4940_9fc0_861fcd94b0e8
stoichiometry: 1.0
species: meta G6P
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_881aa2fd_447d_4d3c_acce_7ee370760b0c
units: dimensionless
value: 14492.7536231884
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_2ed72193_7742_40d5_96d5_e42a38a49990
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE
type: SBMLUnit

http://identifiers.org/biomodels.db/MODEL1303260000#_4f09d1dd_40bc_4f37_b15b_fb40612c54ee
stoichiometry: 1.0
species: meta NADH
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#cc599c2a_d4f5_48ef_9869_b2199abd2d1b
units: dimensionless
value: 5.12
type: LocalParameter

meta PGK
fast: false
name: 3-phosphoglycerate kinase
is version of: http://identifiers.org/ec-code/2.7.2.3
is: R01512
is: SBO:0000176
reversible: true
modifier: MODEL1303260000#
type: Reaction
is version of: GO:0004618

http://identifiers.org/biomodels.db/MODEL1303260000#e06ad167_5318_4e9a_95c4_a6b6f3386707
value: 1.83333333333333
type: LocalParameter

meta HXK2
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.0153328384926289
initial amount: NaN
in compartment: meta cell
name: HXK2
type: Species

http://identifiers.org/biomodels.db/MODEL1303260000#_9715dfb6_5357_4e2c_b1c0_2411875a7737
units: dimensionless
value: 0.0174
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#b623a4c0_7b78_4b07_b088_b7d28fda8546
value: 0.3
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#db91f603_9a72_4f3e_b291_caa08a694cf0
stoichiometry: 1.0
species: meta GLCx
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#ddf777ef_098a_4b23_b488_d6f319c453b5
value: 3.36
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#ce93df15_aca6_48eb_8316_c43ca101b7ad
value: 0.09
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_884f2fba_d1bd_42c4_aae1_dd6dfa2ff1f6
units: dimensionless
value: 100.0
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_7baa970e_1539_4052_a0ee_0e262448eae0
value: 1.57816666666667
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#c26393a7_3e89_45d0_a8ad_f33087f6e46b
value: 0.11
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#a5506c2c_1cd5_4c34_b2d4_55996b8ea35e
stoichiometry: 1.0
species: meta PYR
type: SpeciesReference

meta HXK1
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.0041951864287446
initial amount: NaN
in compartment: meta cell
name: HXK1
type: Species

http://identifiers.org/biomodels.db/MODEL1303260000#_73a151dc_5d16_47a5_8ce9_ec8b9cb92cd9
stoichiometry: 1.0
species: meta SUC
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_8a3955de_c5a6_48d3_90e8_b4fe4daaf13f
stoichiometry: 1.0
species: meta ADP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#f73ba490_9a08_42b1_bc4d_aabdd63fdca3
stoichiometry: 3.0
species: meta NADH
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#a073f759_fbae_4c6f_a8ec_d2b761c7417b
stoichiometry: 1.0
species: meta AcAld
type: SpeciesReference

meta glycogen branch
fast: false
reversible: false
type: Reaction
modifier: MODEL1303260000#
name: glycogen branch
is version of: GO:0005978
is: SBO:0000176

http://identifiers.org/biomodels.db/MODEL1303260000#_513697a2_dd43_4542_b179_4f3ba2e9baaa
units: dimensionless
value: 0.19
type: LocalParameter

meta PGI
fast: false
is: SBO:0000176
modifier: MODEL1303260000#
reversible: true
is: R00771
is version of: GO:0004347
name: phosphoglucose isomerase
type: Reaction
is version of: http://identifiers.org/ec-code/5.3.1.9

http://identifiers.org/biomodels.db/MODEL1303260000#edab4b7e_f997_4b71_b990_361f1e4bf7e5
stoichiometry: 1.0
species: meta ATP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#c5c16730_059d_46cd_b104_a9bd39cd6957
units: dimensionless
value: 0.00533412710224736
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#a2f88d56_4fca_4814_b9ea_42d807a3f253
stoichiometry: 1.0
species: meta DHAP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_888f3ba6_6c94_4e06_9b34_c6f337faba68
stoichiometry: 1.0
species: meta P2G
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_46963ce4_f48e_45d6_a2cc_acc81d4da159
value: 0.069
type: LocalParameter

meta TPI1
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.073589454911377
initial amount: NaN
in compartment: meta cell
name: TPI1
type: Species

http://identifiers.org/biomodels.db/MODEL1303260000#_6c42c679_202a_4c59_ad59_e28b46051f29
name: per mM per second
type: SBMLUnitsDef

http://identifiers.org/biomodels.db/MODEL1303260000#_13271739_b027_4918_bcff_e0bddcbc9990
value: 6.82E-4
type: LocalParameter

meta PGI1
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.0345726768225249
initial amount: NaN
in compartment: meta cell
name: PGI1
type: Species

http://identifiers.org/biomodels.db/MODEL1303260000#_1a818a32_b22f_423e_9c03_6bd3d6e2f14c
value: 0.031
type: LocalParameter

meta SUC
name: succinate
constant: true
initial amount: NaN
initial concentration: 0.0
is: C00042
is: SBO:0000247
type: Species
is: CHEBI:30031
in compartment: meta cell
has only substance units: false
boundary condition: true

http://identifiers.org/biomodels.db/MODEL1303260000#_4cb328bc_3650_4f07_8262_709919898ecc
name: mmol
type: SBMLUnitsDef

http://identifiers.org/biomodels.db/MODEL1303260000#e0de4b68_e5ef_4bce_9a4e_5c9c5828a808
units: dimensionless
value: 1.9
type: LocalParameter

meta AMP
name: AMP
boundary condition: true
is: SBO:0000247
initial amount: NaN
is: CHEBI:16027
has only substance units: false
in compartment: meta cell
constant: false
is: C00020
initial concentration: 0.44
type: Species

meta EtOH
initial amount: NaN
name: ethanol
is: C00469
initial concentration: 55.472577854384
type: Species
is: CHEBI:16236
is: SBO:0000247
has only substance units: false
constant: true
in compartment: meta cell
boundary condition: true

http://identifiers.org/biomodels.db/MODEL1303260000#_81efbfc0_caa3_43fc_bccc_4ec55681bc2e
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE
type: SBMLUnit

http://identifiers.org/biomodels.db/MODEL1303260000#a6870a49_00e6_4655_90aa_500323307d6d
stoichiometry: 1.0
species: meta EtOH
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#d8779d02_fa35_4dc5_a1ce_209752641dbe
value: 43.0833333333333
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_0e980b94_581e_4348_81ea_6f59ec398aff
units: dimensionless
value: 3.0
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#c6863640_356e_439a_9815_ef59e37d66a9
value: 0.5
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_6ee5224c_4fc8_49d8_8f66_ff170c9b14d7
value: 30.0
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_40518a11_e808_48b6_a682_7ece2725fe8b
stoichiometry: 1.0
species: meta NAD
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_3ebf6be3_f8ac_434c_9a2d_7902bfb0200e
value: 0.3
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_769f1ede_607f_446a_b937_b19f5c66020f
value: 0.93
type: LocalParameter

meta AK
fast: false
is: SBO:0000176
is version of: GO:0004017
is version of: http://identifiers.org/ec-code/2.7.4.3
reversible: true
name: adenylate kinase
is: R00127
modifier: MODEL1303260000#
type: Reaction

http://identifiers.org/biomodels.db/MODEL1303260000#e2c25d6e_bc45_4f1a_9855_d0e564113814
stoichiometry: 1.0
species: meta ADP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#f2f9d940_2814_4398_bf00_86367421c52d
value: 1.11
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_3aa5c31d_103e_48dd_b2fb_a7e12288d997
value: 0.2
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_95976d15_5441_4afa_9fc6_9d6bd93e4d55
exponent: -1.0
scale: 0
multipler: 1.0
kind: LITRE
type: SBMLUnit

http://identifiers.org/biomodels.db/MODEL1303260000#f0d7a3a6_46e1_4a26_870c_4e1133238adc
stoichiometry: 1.0
species: meta GAP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_95a6850b_848f_4d1e_ba1f_75fc211088e5
value: 1.1
type: LocalParameter

meta HXK
modifier: MODEL1303260000#
is version of: GO:0004396
name: hexokinase
fast: false
type: Reaction
is: R02848
is: SBO:0000176
reversible: true
is version of: http://identifiers.org/ec-code/2.7.1.1

http://identifiers.org/biomodels.db/MODEL1303260000#_2748f572_6469_416e_8a55_c8b29e8adb3c
units: dimensionless
value: 0.91
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_9dd0c2b6_29f2_4067_bd92_7c862c36c90f
units: dimensionless
value: 0.66
type: LocalParameter

meta PDC6
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.0016352160527653
initial amount: NaN
in compartment: meta cell
name: PDC6
type: Species

meta extracellular
is: GO:0005576
constant: true
size: 1.0
spatial dimensions: 3.0
name: extracellular
type: Compartment

meta PFK
reversible: false
name: phosphofructokinase
is version of: http://identifiers.org/ec-code/2.7.1.11
type: Reaction
is version of: GO:0003872
is: R00756
fast: false
is: SBO:0000176
modifier: MODEL1303260000#

http://identifiers.org/biomodels.db/MODEL1303260000#_9e0b42b2_11ad_4329_a122_b8f9ecca4546
value: 0.3
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_15246912_445d_463a_a291_d216835f42fb
value: 2.4
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_3fecb0c4_b101_4163_b311_d70925c72983
stoichiometry: 1.0
species: meta PYR
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_0ef11fd8_629c_49ae_9e1f_20bf95b8b877
exponent: -1.0
scale: -3
multipler: 1.0
kind: MOLE
type: SBMLUnit

http://identifiers.org/biomodels.db/MODEL1303260000#_5eaad251_bc47_4229_943a_96a535ac3b7e
constant: true
units: litre
value: 2.0E-14
name: volume
type: Parameter

meta ATP
boundary condition: false
is: SBO:0000247
constant: false
name: ATP
has only substance units: false
in compartment: meta cell
type: Species
initial concentration: 4.29
initial amount: NaN
is: C00002
is: CHEBI:15422

meta P3G
type: Species
is: SBO:0000247
constant: false
is: CHEBI:17794
initial concentration: 0.117456252783611
in compartment: meta cell
has only substance units: false
name: 3-phosphoglycerate
boundary condition: false
initial amount: NaN
is: C00197

http://identifiers.org/biomodels.db/MODEL1303260000#f7f4a0e0_ccf0_4eca_9646_fb0db92477d9
units: dimensionless
value: 0.45
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_0043cea8_da18_4284_8db3_dd75c54c776d
value: 10.0
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_99f36c7f_6537_4d00_a27f_ad4edee0e16e
units: dimensionless
value: 6500.0
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_9df45fd0_efd8_4ea5_8223_4c496cfe6f3a
value: 3.945
type: LocalParameter

meta PYR
is: CHEBI:15361
type: Species
has only substance units: false
is: SBO:0000247
is: C00022
initial concentration: 0.527117851793548
constant: false
initial amount: NaN
in compartment: meta cell
name: pyruvate
boundary condition: false

meta PEP
is: C00074
constant: false
boundary condition: false
name: phosphoenolpyruvate
is: SBO:0000247
has only substance units: false
initial concentration: 0.152501353339511
initial amount: NaN
is: CHEBI:18021
in compartment: meta cell
type: Species

http://identifiers.org/biomodels.db/MODEL1303260000#_06f168ab_70d2_4668_9412_fcd401f674f5
stoichiometry: 1.0
species: meta glycogen
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#f42b6626_2afe_410e_a1d7_92031d136293
stoichiometry: 1.0
species: meta P2G
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#ecd3385d_a0c1_4b1a_ad17_27a115f1ce5a
stoichiometry: 1.0
species: meta ATP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_22ad603b_a883_4913_b4f6_ebe168925599
exponent: -1.0
scale: -3
multipler: 1.0
kind: MOLE
type: SBMLUnit

http://identifiers.org/biomodels.db/MODEL1303260000#d37fa732_5d56_4815_865e_1aba3292625e
constant: true
value: 6.022140000000001E20
name: Avogadro constant
type: Parameter

meta CDC19
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.512097526792801
initial amount: NaN
in compartment: meta cell
name: CDC19
type: Species

http://identifiers.org/biomodels.db/MODEL1303260000#a4166064_ce27_4bba_80ab_85db521ccc23
units: dimensionless
value: 0.045
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_11ebdf9d_34e3_4e92_a4b6_4569b2ec3355
stoichiometry: 2.0
species: meta G6P
type: SpeciesReference

meta TRH
is: CHEBI:16551
boundary condition: true
constant: true
type: Species
initial amount: NaN
is: C01083
in compartment: meta cell
is: SBO:0000247
has only substance units: false
name: trehalose
initial concentration: 0.00384697134241316

meta trehalose branch
name: trehalose branch
reversible: false
fast: false
type: Reaction
modifier: MODEL1303260000#
is version of: GO:0005992
is: SBO:0000176

meta BPG
has only substance units: false
type: Species
boundary condition: false
initial concentration: 7.36873499865602E-4
initial amount: NaN
name: 1,3-bisphosphoglycerate
constant: false
is: C00236
is: SBO:0000247
is: CHEBI:16001
in compartment: meta cell

meta ADH
modifier: MODEL1303260000#
is: R00754
is: SBO:0000176
reversible: true
is version of: http://identifiers.org/ec-code/1.1.1.1
fast: false
is version of: GO:0004022
name: alcohol dehydrogenase
type: Reaction

meta GLC
in compartment: meta cell
has only substance units: false
initial amount: NaN
is: CHEBI:4167
name: glucose
constant: false
type: Species
boundary condition: false
initial concentration: 1.5700004483456
is: SBO:0000247
is: C00031

http://identifiers.org/biomodels.db/MODEL1303260000#e0ec9609_27e4_48d5_8eb6_a1385bae01e7
value: 0.92
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_1859a491_d3a1_493b_a650_d8a78c590c6e
value: 0.08
type: LocalParameter

meta DHAP
type: Species
is: SBO:0000247
name: dihydroxyacetone phosphate
is: CHEBI:16108
constant: false
is: C00111
in compartment: meta cell
initial amount: NaN
initial concentration: 0.290344213186674
boundary condition: false
has only substance units: false

http://identifiers.org/biomodels.db/MODEL1303260000#_90cd397e_30ea_4321_98ac_46372ebbec6a
stoichiometry: 1.0
species: meta F6P
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#ea381412_284c_4d1c_aba2_47825489f1e0
value: 16.6666666666667
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#e8e73966_96cc_4a38_a9da_4709e60dbf2b
value: 21.0
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_283dba2c_cfc2_4abf_b453_ed2f77cff4ac
stoichiometry: 1.0
species: meta ADP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#bd76de19_22d0_4164_ac03_0542eb1622d7
stoichiometry: 1.0
species: meta ADP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_1f7c5717_0aae_4f3a_b6b2_a032a2761b5a
value: 0.15
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_449e9235_08a4_4d31_a628_397d8e59da3f
value: 259.220125786164
type: LocalParameter

meta F16bP
is: CHEBI:28013
name: fructose 1,6-bisphosphate
in compartment: meta cell
initial amount: NaN
boundary condition: false
is: SBO:0000247
type: Species
initial concentration: 1.14580464751733
constant: false
has only substance units: false
is: C05378

http://identifiers.org/biomodels.db/MODEL1303260000#_8fcf1400_848f_4e46_83b3_58e764e24807
stoichiometry: 1.0
species: meta NADH
type: SpeciesReference

meta G6P
constant: false
is: C00668
initial concentration: 0.193120800911304
is: CHEBI:17665
boundary condition: false
name: glucose 6-phosphate
is: SBO:0000247
has only substance units: false
initial amount: NaN
type: Species
in compartment: meta cell

meta PDC5
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.00308868608169189
initial amount: NaN
in compartment: meta cell
name: PDC5
type: Species

http://identifiers.org/biomodels.db/MODEL1303260000#_309c6cb7_1792_4809_a3c2_4d87e838e882
constant: false
units: dimensionless
value: NaN
type: Parameter

http://identifiers.org/biomodels.db/MODEL1303260000#_14e074f6_503e_4e9d_b9bc_8d79c82c8d2d
constant: true
value: 6.02
type: Parameter

http://identifiers.org/biomodels.db/MODEL1303260000#_75a126eb_4b2e_4980_9b29_a1e3ee595d82
stoichiometry: 1.0
species: meta ADP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_5e5dc03d_e61d_42d0_85f9_e5d0ba9bd29a
value: 0.06
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_0edd22c2_55e0_4803_a2da_0eb9254dfae0
stoichiometry: 1.0
species: meta GAP
type: SpeciesReference

meta TPI
is: R01015
is version of: GO:0004807
fast: false
reversible: true
is: SBO:0000176
is version of: http://identifiers.org/ec-code/5.3.1.1
modifier: MODEL1303260000#
name: triosephosphate isomerase
type: Reaction

http://identifiers.org/biomodels.db/MODEL1303260000#fcf69a87_baab_4be0_9f5d_f30b55c94578
stoichiometry: 1.0
species: meta DHAP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_60fc3ad2_bc9e_4af1_96d1_f84f1379c046
value: 0.0995
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_39ebaa56_ca8f_4441_bb92_3d4da18bd195
stoichiometry: 1.0
species: meta GLC
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#ca86a2ab_cfce_419a_b098_0db6f309170d
stoichiometry: 1.0
species: meta F6P
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_15b94c36_2c50_4c2a_8d8c_e4f492206eae
units: dimensionless
value: 4300.0
type: LocalParameter

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stoichiometry: 1.0
species: meta ADP
type: SpeciesReference

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value: 0.1
type: LocalParameter

meta glycerol branch
is: SBO:0000176
has version: http://identifiers.org/ec-code/1.1.1.8
fast: false
modifier: MODEL1303260000#
type: Reaction
has version: http://identifiers.org/ec-code/3.1.3.21
is version of: GO:0006114
has part: R00842
has part: R07298
name: glycerol branch
reversible: false

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stoichiometry: 1.0
species: meta ATP
type: SpeciesReference

meta cell
is: GO:0005829
constant: true
size: 1.0
spatial dimensions: 3.0
name: cell
type: Compartment

http://identifiers.org/biomodels.db/MODEL1303260000#_3ab41547_02a2_4fb6_93d1_361511e633b6
value: 0.65
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_76866979_023e_4104_8a47_6a9b13a307ba
value: 0.23
type: LocalParameter

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stoichiometry: 1.0
species: meta AMP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#b800653f_4f95_4c96_8044_fa6d08f7dd70
value: 0.53
type: LocalParameter

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units: dimensionless
value: 2000.0
type: LocalParameter

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stoichiometry: 1.0
species: meta AcAld
type: SpeciesReference

meta GPM1
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.182500074724267
initial amount: NaN
in compartment: meta cell
name: GPM1
type: Species

http://identifiers.org/biomodels.db/MODEL1303260000#_19a841eb_f9e9_414a_95ad_70134bddc785
value: 1.0
type: LocalParameter

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value: 0.01480424934314
type: LocalParameter

meta GLY
is: CHEBI:17754
name: glycerol
is: C00116
in compartment: meta cell
type: Species
initial concentration: 0.15
has only substance units: false
constant: true
initial amount: NaN
boundary condition: true
is: SBO:0000247

meta F26bP
initial amount: NaN
constant: true
is: C00665
is: CHEBI:28602
is: SBO:0000247
has only substance units: false
in compartment: meta cell
type: Species
boundary condition: true
initial concentration: 0.003
name: fructose 2,6-bisphosphate

meta PFK1
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.0116962574765781
initial amount: NaN
in compartment: meta cell
name: PFK1
type: Species

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value: 0.4
type: LocalParameter

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stoichiometry: 1.0
species: meta DHAP
type: SpeciesReference

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stoichiometry: 1.0
species: meta G6P
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#a431bac1_447f_48b2_a12f_3279ab439e79
value: 0.75
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_0e0ae0ab_6d51_4cb5_af09_179d8857ec10
stoichiometry: 1.0
species: meta ATP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#fc77aec3_dc8d_46e5_a1d3_5e3798b4520e
stoichiometry: 1.0
species: meta GLC
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_1b1e97ac_1cd8_4ae6_a18d_db0edb1f1f45
value: 0.53
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#ffd5964d_ece1_4d2a_8c80_416ad4c8d8c2
value: 0.17
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#a8534be6_7747_4bbb_8ee2_ccff3c0e6258
value: 1.1918
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#c58479c0_b17a_46d9_9e8c_9bfb0e3bc5bd
stoichiometry: 1.0
species: meta NAD
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_7992f6de_1808_4486_b263_e76acf2d11b2
value: 17.0
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_98a7e41d_84e1_4fdc_83ec_84e69d34ba81
value: 17.6
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_058bffa6_1a2d_42cc_aa9e_0052d106dd65
stoichiometry: 2.0
species: meta ADP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_33ac6ed0_9fae_4527_a5c2_870e25be6d40
stoichiometry: 2.0
species: meta AcAld
type: SpeciesReference

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stoichiometry: 1.0
species: meta PEP
type: SpeciesReference

meta GLK1
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.0112717406104807
initial amount: NaN
in compartment: meta cell
name: GLK1
type: Species

http://identifiers.org/biomodels.db/MODEL1303260000#c5cb8f49_a032_45e3_9157_54424c94c92c
value: 1.62066666666667
type: LocalParameter

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units: dimensionless
value: 6.7
type: LocalParameter

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value: 1.4
type: LocalParameter

meta glycogen
constant: true
in compartment: meta cell
is: CHEBI:28087
boundary condition: true
type: Species
is: SBO:0000247
name: glycogen
has only substance units: false
initial amount: NaN
is: C00182
initial concentration: 0.0

http://identifiers.org/biomodels.db/MODEL1303260000#e5f84fb6_ce43_45cb_960e_524f72b8f38a
stoichiometry: 1.0
species: meta P3G
type: SpeciesReference

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stoichiometry: 1.0
species: meta ADP
type: SpeciesReference

meta TDH1
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.087716160700349
initial amount: NaN
in compartment: meta cell
name: TDH1
type: Species

meta TDH
fast: false
name: glyceraldehyde phosphate dehydrogenase
is version of: http://identifiers.org/ec-code/1.2.1.12
is: R01061
type: Reaction
is: SBO:0000176
is version of: GO:0004365
reversible: true
modifier: MODEL1303260000#

http://identifiers.org/biomodels.db/MODEL1303260000#ac7e5464_775b_4bdb_943a_ee908da73c35
stoichiometry: 3.0
species: meta NAD
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#ff618295_4c5e_4d30_b160_336d2ded833d
value: 7500.0
type: LocalParameter

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value: 0.003
type: LocalParameter

meta GPM
reversible: true
is: SBO:0000176
name: phosphoglyceromutase
type: Reaction
is version of: http://identifiers.org/ec-code/5.4.2.1
is version of: GO:0004619
fast: false
is: R01518
modifier: MODEL1303260000#

http://identifiers.org/biomodels.db/MODEL1303260000#_87d3ef9e_97bb_4c88_8d65_6d3b808dd49e
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND
type: SBMLUnit

meta ENO1
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.171592988538958
initial amount: NaN
in compartment: meta cell
name: ENO1
type: Species

http://identifiers.org/biomodels.db/MODEL1303260000#b4f36ebd_595f_4b0f_9406_14e538bcda59
value: 0.023
type: LocalParameter

meta succinate branch
name: succinate branch
is version of: GO:0006105
reversible: false
fast: false
modifier: MODEL1303260000#
type: Reaction
is: SBO:0000176

http://identifiers.org/biomodels.db/MODEL1303260000#e3c34b5f_6d27_4767_b93e_071ced60e939
value: 0.14
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#d06c6788_d9ed_4851_bb77_aa3048734d62
value: 111.334973497906
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_9266ffa0_7052_4811_bd3e_fe4271b26db4
stoichiometry: 1.0
species: meta PEP
type: SpeciesReference

meta NADH
initial concentration: 0.0867096979846952
is: C00004
constant: false
name: NADH
has only substance units: false
is: SBO:0000247
initial amount: NaN
type: Species
boundary condition: true
is: CHEBI:16908
in compartment: meta cell

meta FBA1
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.0367018202831552
initial amount: NaN
in compartment: meta cell
name: FBA1
type: Species

http://identifiers.org/biomodels.db/MODEL1303260000#c175a051_439b_48e8_b571_a4cfacbd4a6b
stoichiometry: 1.0
species: meta TRH
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_45e3d912_9b66_4768_a532_758016d6adaa
stoichiometry: 1.0
species: meta GAP
type: SpeciesReference

meta GAP
name: glyceraldehyde 3-phosphate
initial concentration: 0.0789727571926259
constant: false
is: SBO:0000247
in compartment: meta cell
boundary condition: false
is: CHEBI:29052
has only substance units: false
initial amount: NaN
is: C00118
type: Species

meta ENO2
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.493611573294543
initial amount: NaN
in compartment: meta cell
name: ENO2
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http://identifiers.org/biomodels.db/MODEL1303260000#a118e1ca_52b3_49e8_a8af_fc81b9370e2a
stoichiometry: 1.0
species: meta F16bP
type: SpeciesReference

meta PDC1
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.266952694557084
initial amount: NaN
in compartment: meta cell
name: PDC1
type: Species

http://identifiers.org/biomodels.db/MODEL1303260000#abbea3f2_f126_4749_be11_a1f0a26d0160
value: 4.33
type: LocalParameter

meta ATPase
fast: false
type: Reaction
is: SBO:0000176
name: ATPase
modifier: MODEL1303260000#
reversible: false
is version of: GO:0016887

http://identifiers.org/biomodels.db/MODEL1303260000#_07cae58c_3cad_420f_b2a1_c284b468d62d
name: mM per second
type: SBMLUnitsDef

http://identifiers.org/biomodels.db/MODEL1303260000#dd0f04cc_97b5_4751_a8aa_d0775c110165
value: 0.237257345562943
type: LocalParameter

MODEL1303260000
reaction: meta HXT
reaction: meta glycerol branch
species: meta AMP
name: reversible michaelis-menten: two noncompeting couples
name: reversible michaelis-menten: ordered uni-bi
reaction: meta ADH
species: meta HXK2
species: meta PYR
reaction: meta ATPase
species: meta GLK1
species: meta PFK2
reaction: meta trehalose branch
species: meta PDC6
species: meta PDC1
reaction: meta GPM
type: SBMLModel
name: Hill kinetics
species: meta GLC
area units: area
species: meta TPI1
is: http://identifiers.org/taxonomy/4932
length unit: length
notes: Smallbone2013 - Glycolysis in S.cerevisiae - Iteration 00 This model is described in the article: A model of yeast glycolysis based on a consistent kinetic characterization of all its enzymes Kieran Smallbone, Hanan L. Messiha, Kathleen M. Carroll, Catherine L. Winder, Naglis Malys, Warwick B. Dunn, Ettore Murabito, Neil Swainston, Joseph O. Dada, Farid Khan, Pınar Pir, Evangelos Simeonidis, Irena Spasić, Jill Wishart, Dieter Weichart, Neil W. Hayes, Daniel Jameson, David S. Broomhead, Stephen G. Oliver, Simon J. Gaskell, John E.G. McCarthy, Norman W. Paton, Hans V. Westerhoff, Douglas B. Kell, Pedro Mendes FEBS Letters (in press) Abstract: We present an experimental and computational pipeline for the generation of kinetic models of metabolism, and demonstrate its application to glycolysis in Saccharomyces cerevisiae. Starting from an approximate mathematical model, we employ a “cycle of knowledge” strategy, identifying the steps with most control over flux. Kinetic parameters of the individual isoenzymes within these steps are measured experimentally under a standardised set of conditions. Experimental strategies are applied to establish a set of in vivo concentrations for isoenzymes and metabolites. The data are integrated into a mathematical model that is used to predict a new set of metabolite concentrations and reevaluate the control properties of the system. This bottom-up modelling study reveals that control over the metabolic network most directly involved in yeast glycolysis is more widely distributed than previously thought. This model is hosted on BioModels Database and identified by: MODEL1303260000 . To cite BioModels Database, please use: BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models . To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more …
species: meta BPG
species: meta F26bP
species: meta P2G
compartment: meta cell
reaction: meta TDH
name: phosphofructokinase kinetics
name: reversible mass action
reaction: meta glycogen branch
reaction: meta FBA
species: meta ADH5
species: meta PFK1
species: meta PYK2
name: irreversible mass action
reaction: meta PGK
reaction: meta PFK
species: meta PEP
species: meta P3G
species: meta PGI1
species: meta CDC19
species: meta AcAld
species: meta HXK1
species: meta PGK1
species: meta F6P
species: meta EtOH
species: meta TRH
species: meta glycogen
species: meta TDH3
species: meta ATP
reaction: meta AK
species: meta PDC5
compartment: meta extracellular
species: meta ENO1
species: meta GLCx
name: reversible michaelis-menten: ordered bi-bi
species: meta GLY
name: reversible michaelis-menten: one substrate, one product
species: meta GAP
reaction: meta TPI
species: meta F16bP
species: meta NAD
species: meta DHAP
reaction: meta PDC
reaction: meta HXK
name: facilitated diffusion: symmetrical carrier
species: meta TDH1
reaction: meta succinate branch
reaction: meta PYK
reaction: meta ENO
species: meta NADH
reaction: meta PGI
name: Smallbone2013 - Glycolysis in S.cerevisiae - Iteration 00
species: meta GPM1
name: max
curated: false
species: meta TDH2
species: meta FBA1
species: meta G6P

http://identifiers.org/biomodels.db/MODEL1303260000#_4bd254bf_1478_4092_973a_e0a346b745eb
stoichiometry: 1.0
species: meta ATP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_9e1dd2e9_03eb_4f3c_b440_20d9517ee9d5
value: 0.00592169973725601
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_79b56b47_9e37_4dcd_a254_4006b6c925df
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http://identifiers.org/biomodels.db/MODEL1303260000#_59ddb082_8dbc_45a8_a3a1_0c2cebf1fdcb
value: 1.2
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_2ef17db4_18f6_46ef_8df3_81d015b60447
value: 0.658333333333333
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_66b4c2ba_a8ea_4890_9fbd_f4e5f3067088
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND
type: SBMLUnit

meta PGK1
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.0644142281647388
initial amount: NaN
in compartment: meta cell
name: PGK1
type: Species

http://identifiers.org/biomodels.db/MODEL1303260000#_9c945893_6b96_4088_ae3a_e08540ead348
units: dimensionless
value: 0.397
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_6ffa38a6_f2bf_4598_9245_b6aae6cd67ea
value: 0.04
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#ee0c27e3_88d0_40b0_b204_e94e56f6f652
stoichiometry: 1.0
species: meta F16bP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_7dd838c3_8cc8_4f46_ab71_646db1285816
value: 19.2
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_1cb820d8_e91e_42db_b419_3e296950b824
exponent: 1.0
scale: 0
multipler: 1.0
kind: LITRE
type: SBMLUnit

meta ENO
is: SBO:0000176
is version of: http://identifiers.org/ec-code/4.2.1.11
type: Reaction
fast: false
is version of: GO:0004634
is: R00658
modifier: MODEL1303260000#
reversible: true
name: enolase

meta TDH3
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 1.05110118662137
initial amount: NaN
in compartment: meta cell
name: TDH3
type: Species

meta ADH5
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.00106249605621922
initial amount: NaN
in compartment: meta cell
name: ADH5
type: Species

http://identifiers.org/biomodels.db/MODEL1303260000#_4f0c9959_1e63_46a7_a3e5_6135a4d63545
units: dimensionless
value: 3200.0
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#f48896ab_f64c_4986_940a_67ec770a5576
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND
type: SBMLUnit

http://identifiers.org/biomodels.db/MODEL1303260000#_17043f26_afa5_4374_af5c_d294df0175bd
value: 90.0
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_70b0ab71_f37c_49ff_a9e0_0770374c9bc2
stoichiometry: 1.0
species: meta ATP
type: SpeciesReference

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stoichiometry: 1.0
species: meta ATP
type: SpeciesReference

meta PDC
is: SBO:0000176
is version of: http://identifiers.org/ec-code/4.1.1.1
reversible: false
name: pyruvate decarboxylase
fast: false
is: R00636
modifier: MODEL1303260000#
is version of: GO:0004737
type: Reaction

http://identifiers.org/biomodels.db/MODEL1303260000#f329f9a8_7bd8_445b_9268_3ea24784d2e9
name: mM
type: SBMLUnitsDef

http://identifiers.org/biomodels.db/MODEL1303260000#_0c7b7367_5fb9_48d6_824b_1b98552f53ab
constant: false
value: NaN
name: glycerate phosphates
type: Parameter

meta TDH2
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: meta cell
name: TDH2
type: Species

meta AcAld
initial amount: NaN
is: SBO:0000247
type: Species
name: acetaldehyde
in compartment: meta cell
has only substance units: false
boundary condition: false
is: C00084
constant: false
initial concentration: 0.178140579850657
is: CHEBI:15343

http://identifiers.org/biomodels.db/MODEL1303260000#_4df2fe08_1387_42a6_89af_cc11a0af80ef
stoichiometry: 1.0
species: meta NADH
type: SpeciesReference

meta PFK2
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.00975915538330228
initial amount: NaN
in compartment: meta cell
name: PFK2
type: Species

meta FBA
reversible: true
is version of: GO:0004332
is version of: http://identifiers.org/ec-code/4.1.2.13
type: Reaction
is: R01068
name: fructosebisphosphate aldolase
is: SBO:0000176
fast: false
modifier: MODEL1303260000#

meta GLCx
in compartment: meta extracellular
is: CHEBI:4167
initial concentration: 74.0
is: C00031
type: Species
initial amount: NaN
boundary condition: true
has only substance units: false
constant: true
name: glucose
is: SBO:0000247

http://identifiers.org/biomodels.db/MODEL1303260000#_2a51ccb1_5a10_4ca3_8b67_2a6421945937
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE
type: SBMLUnit

http://identifiers.org/biomodels.db/MODEL1303260000#e21933ab_60c5_43b8_94da_4f288d7c2bba
value: 1.5
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_6a0c8ea0_e564_4066_a821_070dc6098ede
value: 0.0098
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_6b00fa28_b8f3_49cd_94c2_6aeabc29849c
value: 0.111
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_1a75f398_4a00_4db1_8d0e_c196467031bd
exponent: -1.0
scale: 0
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kind: LITRE
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http://identifiers.org/biomodels.db/MODEL1303260000#_36bd3d07_adc0_4279_bd1d_117d160fa622
stoichiometry: 1.0
species: meta GLY
type: SpeciesReference

meta HXT
fast: false
name: glucose transport
reversible: true
is version of: GO:0015758
type: Reaction
modifier: MODEL1303260000#
is: SBO:0000185

http://identifiers.org/biomodels.db/MODEL1303260000#_9c4d1808_882b_4b30_8c64_d644fe0c3f02
constant: true
value: 1.59
type: Parameter

http://identifiers.org/biomodels.db/MODEL1303260000#a6b61922_e2b7_4d5c_9a82_f84babde4a8e
value: 14.2966666666667
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_0414c325_c45e_426c_bac7_b686d4a961b9
value: 0.08
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_20003c19_fe95_4803_b472_a45808aec197
units: dimensionless
value: 0.29
type: LocalParameter

meta F6P
is: CHEBI:16084
name: fructose 6-phosphate
boundary condition: false
constant: false
is: C05345
has only substance units: false
in compartment: meta cell
type: Species
initial amount: NaN
initial concentration: 0.0588603054728053
is: SBO:0000247

http://identifiers.org/biomodels.db/MODEL1303260000#_279b5fcc_90c5_4e10_b00d_003a201f0c32
units: dimensionless
value: 0.0845
type: LocalParameter

meta PYK
fast: false
modifier: MODEL1303260000#
name: pyruvate kinase
is: R00200
is version of: GO:0004743
reversible: true
is: SBO:0000176
is version of: http://identifiers.org/ec-code/2.7.1.40
type: Reaction

http://identifiers.org/biomodels.db/MODEL1303260000#f8259075_9beb_443f_a14d_f9de6b2810e4
value: 0.21
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#d7fcff85_68f3_4364_b879_0dfc9f23c76f
stoichiometry: 1.0
species: meta NAD
type: SpeciesReference

meta ADP
is: SBO:0000247
is: CHEBI:16761
type: Species
initial amount: NaN
in compartment: meta cell
is: C00008
constant: false
initial concentration: 1.29
has only substance units: false
name: ADP
boundary condition: false

http://identifiers.org/biomodels.db/MODEL1303260000#_77a8af4d_f143_4c4f_a6e8_23a3edf5bf23
value: 0.71
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#e8219059_513a_45e3_9b71_083b03b6c144
constant: false
units: dimensionless
value: NaN
type: Parameter

http://identifiers.org/biomodels.db/MODEL1303260000#_7b61b620_bc52_4139_b3ea_a2fc5a71018c
stoichiometry: 1.0
species: meta BPG
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#fcc19ae5_a026_4b12_b69c_798592a2ada2
name: per mmol
type: SBMLUnitsDef

http://identifiers.org/biomodels.db/MODEL1303260000#d7106294_3e4f_46c8_ad4a_811b745726bd
stoichiometry: 1.0
species: meta BPG
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_7fa1a7cb_b376_4a16_9231_4c62e7a087dd
stoichiometry: 1.0
species: meta ATP
type: SpeciesReference

http://identifiers.org/biomodels.db/MODEL1303260000#_69a0a0cf_2ddf_43db_a472_9cee1650b3cb
value: 2.0
type: LocalParameter

http://identifiers.org/biomodels.db/MODEL1303260000#_6d17fc7f_502a_440d_a9d0_0f9bf4648acf
name: per second
type: SBMLUnitsDef

meta PYK2
is: SBO:0000252
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.00151748381804475
initial amount: NaN
in compartment: meta cell
name: PYK2
type: Species

orgname: University of Manchester

W3 CDTF: Sun Nov 09 00:00:00 GMT 2008

n:
  given: Kieran
  family: Smallbone

W3 CDTF: Wed Nov 14 14:34:48 GMT 2012