MODEL1173105855
parameter: 381726
parameter: 381724
parameter: 381709
parameter: 381698
parameter: 381718
rule: 381679
parameter: 381721
rule: 381687
parameter: 381695
rule: 381680
time units: 152087
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curated: false
parameter: 381716
parameter: 381700
units def: 168038
rule: 381693
parameter: 381704
parameter: 381713
parameter: 381728
length unit: 802859
parameter: 381701
is described by: 978-0-387-09655-1 15
rule: 381684
parameter: 381725
type: SBMLModel
rule: 381688
parameter: 381723
parameter: 381708
parameter: 381697
parameter: 381711
units def: 168098
parameter: 381720
name: Gilbert2008_ElectrochemicalBiosensor
units def: 168147
rule: 381681
area units: 802883
rule: 381682
parameter: 381706
parameter: 381715
parameter: 381703
units def: 168062
notes: This a model from the article: A Case Study in Model-driven Synthetic Biology David Gilbert, Monika Heiner, Susan Rosser, Rachael Fulton, Xu Gu and Maciej Trybilo IFIP International Federation for Information Processing 2008; Volume 268:163-175 doi:10.1007/978-0-387-09655-1_15 , Abstract: We report on a case study in synthetic biology, demonstrating the model-driven design of a self-powering electrochemical biosensor. An essential result of the design process is a general template of a biosensor, which can be instantiated to be adapted to specific pollutants. This template represents a gene expression network extended by metabolic activity. We illustrate the model-based analysis of this template using qualitative, stochastic and continuous Petri nets and related analysis techniques, contributing to a reliable and robust design. This model was taken from the CellML repository and automatically converted to SBML. The original model was: David Gilbert, Monika Heiner, Susan Rosser, Rachael Fulton, Xu Gu and Maciej Trybilo. (2007) - version01 The original CellML model was created by: Cooling, Mike m.cooling@aukland.ac.nz The University of Auckland The Bioengineering Institute This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2011 The BioModels.net Team. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information. In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not.. To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database:…
parameter: 381719
parameter: 381699
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substance units: 163161
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parameter: 381710
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parameter: 381714

168110
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381719
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381711
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name: betaPhzMS
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381725
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name: alphaPYO
type: Parameter

381709
constant: false
units: 168098
value: NaN
name: Jassociation
type: Parameter

381721
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value: 0.0
name: PhzMS
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381723
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units: 168062
value: 0.0
name: PYO
type: Parameter

168147
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unit: 168171
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name: per_uM_per_second
type: SBMLUnitsDef

381706
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168171
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168050
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381714
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168135
exponent: -1.0
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381716
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units: dimensionless
value: 1.0
name: feedbackOn
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381697
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168062
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168159
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381699
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381704
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value: 1000000.0
name: betaTFS
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381710
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381675
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381718
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168086
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168184
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381708
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381720
constant: false
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name: Jgain_PYO
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381726
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value: 0.58
name: deltaPYO
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168074
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381728
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units: 168098
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name: JPYOformation
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381695
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381724
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value: 8.0225E-6
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381698
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name: Jgain_TF
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381705
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name: kd
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381715
constant: true
units: 168098
value: 0.07
name: betaTF
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381696
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value: 0.05
name: alphaTF
type: Parameter

381713
constant: false
units: 168098
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name: JPhzMS
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168122
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168038
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381703
constant: true
units: 168062
value: 5.0
name: s
type: Parameter

381700
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units: 168062
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name: TFS
type: Parameter

168098
unit: 168135
unit: 168122
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381701
constant: false
units: 168062
value: 8.6207
name: TF
type: Parameter