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initial concentration: NaN
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name: CoproporphyrinogenIII
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initial concentration: NaN
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name: S-Formylglutathione
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initial concentration: NaN
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initial concentration: NaN
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in compartment: 564338
name: Guanine[e]
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species: 566142
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species: 566672
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initial concentration: NaN
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in compartment: 564339
name: 3-Phosphonooxypyruvate
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type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hydroxymethylbilane
type: Species

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type: LocalParameter

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species: 564535
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species: 566844
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initial concentration: NaN
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in compartment: 564342
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type: Species

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type: LocalParameter

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species: 564535
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species: 564907
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species: 564535
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Riboflavin[e]
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type: LocalParameter

570716
value: 1000.0
type: LocalParameter

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575259
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type: LocalParameter

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type: LocalParameter

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species: 566006
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species: 564424
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Methyltetrahydrofolate
type: Species

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species: 565796
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type: LocalParameter

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species: 564673
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species: 564366
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type: LocalParameter

565532
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Methylglutaconyl-CoA
type: Species

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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Riboflavin[e]
type: Species

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type: LocalParameter

570713
value: 0.0
type: LocalParameter

314351
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species: 566800
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species: 564405
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species: 564345
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299456
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species: 564357
type: SpeciesReference

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value: 0.0
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570827
value: 0.0
type: LocalParameter

572488
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type: LocalParameter

570714
value: 0.0
type: LocalParameter

240636
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species: 564535
type: SpeciesReference

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species: 564345
type: SpeciesReference

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species: 566244
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species: 564408
type: SpeciesReference

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Valine
type: Species

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species: 564733
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species: 566593
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species: 566247
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species: 566762
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type: LocalParameter

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species: 566110
type: SpeciesReference

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species: 564679
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species: 565018
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species: 565969
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species: 565949
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species: 564345
type: SpeciesReference

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species: 564535
type: SpeciesReference

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type: LocalParameter

573049
value: 0.0
type: LocalParameter

572481
value: 0.0
type: LocalParameter

252821
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species: 564351
type: SpeciesReference

570824
value: 1000.0
type: LocalParameter

574751
value: 0.0
type: LocalParameter

573699
value: -1000.0
type: LocalParameter

573271
value: 1000.0
type: LocalParameter

570719
value: 0.0
type: LocalParameter

566616
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Hypoxanthine[p]
type: Species

299590
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species: 564526
type: SpeciesReference

568339
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reversible: true
product: 317338
kinetic law: 317350
notes: GPR_ASSOCIATION: RSP_2569 GENE_LIST: RSP_2569; SUBSYSTEM: Sulfolipid biosynthesis Equation: UDP-glucose + Sulfite + H+ <=> UDP-6-sulfoquinovose + H2O Confidence Level: 4
reactant: 317289
type: Reaction
product: 317325
name: UDP-sulfoquinovose synthase
reactant: 317313
fast: false

569578
value: 0.0
type: LocalParameter

314461
stoichiometry: 1.0
species: 566805
type: SpeciesReference

236535
stoichiometry: 1.0
species: 565301
type: SpeciesReference

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value: 0.0
type: LocalParameter

575102
value: 1000.0
type: LocalParameter

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species: 564348
type: SpeciesReference

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species: 566255
type: SpeciesReference

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stoichiometry: 1.0
species: 566812
type: SpeciesReference

248396
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species: 564351
type: SpeciesReference

569150
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type: LocalParameter

565307
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: NicotinateD-ribonucleotide
type: Species

574750
value: 1000.0
type: LocalParameter

570825
value: 0.0
type: LocalParameter

566617
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Hypoxanthine[e]
type: Species

277661
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species: 566238
type: SpeciesReference

565003
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Aspartate4-semialdehyde
type: Species

246864
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species: 566063
type: SpeciesReference

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species: 565598
type: SpeciesReference

270670
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species: 566442
type: SpeciesReference

569575
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type: LocalParameter

568979
value: 0.0
type: LocalParameter

568338
reactant: 317217
product: 317241
reactant: 317229
product: 317253
type: Reaction
notes: GPR_ASSOCIATION: RSP_0155 GENE_LIST: RSP_0155; SUBSYSTEM: Valine, leucine and isoleucine biosynthesis Equation: (S)-3-Hydroxyisobutyryl-CoA + H2O <=> CoA + (S)-3-Hydroxyisobutyrate + 2 H+ Confidence Level: 1
fast: false
kinetic law: 317277
product: 317265
reversible: false

283208
stoichiometry: 1.0
species: 564372
type: SpeciesReference

572483
value: 1000.0
type: LocalParameter

564628
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Ribose
type: Species

574539
value: -1000.0
type: LocalParameter

289972
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species: 564556
type: SpeciesReference

570717
value: 0.0
type: LocalParameter

566618
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Hypoxanthine[e]
type: Species

575105
value: 0.0
type: LocalParameter

573273
value: 0.0
type: LocalParameter

570822
value: 0.0
type: LocalParameter

298200
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species: 564390
type: SpeciesReference

305253
stoichiometry: 1.0
species: 566646
type: SpeciesReference

569576
value: 1000.0
type: LocalParameter

568337
product: 317181
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Cysteine and methionine metabolism Equation: Acetyl-CoA + L-Homoserine <=> CoA + O-Acetyl-L-homoserine Confidence Level: 1
reactant: 317157
kinetic law: 317205
fast: false
reversible: true
reactant: 317169
product: 317193
type: Reaction

248928
stoichiometry: 1.0
species: 565352
type: SpeciesReference

574538
value: 0.0
type: LocalParameter

271625
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species: 565454
type: SpeciesReference

565688
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Amino-6-(5'-phosphoribitylamino)uracil
type: Species

572484
value: 0.0
type: LocalParameter

294935
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species: 566260
type: SpeciesReference

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species: 565286
type: SpeciesReference

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value: 1000.0
type: LocalParameter

575104
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type: LocalParameter

240527
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species: 564375
type: SpeciesReference

570823
value: -1000.0
type: LocalParameter

573274
value: 0.0
type: LocalParameter

565009
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans,trans-Farnesyldiphosphate
type: Species

568336
product: 317133
reversible: false
notes: GPR_ASSOCIATION: RSP_2771 GENE_LIST: RSP_2771; SUBSYSTEM: Purine metabolism Equation: Guanosine 3'-diphosphate 5'-triphosphate + H2O <=> Guanosine 3',5'-bis(diphosphate) + Orthophosphate + H+ Confidence Level: 2
reactant: 317085
product: 317109
type: Reaction
reactant: 317097
product: 317121
fast: false
kinetic law: 317145

278324
stoichiometry: 1.0
species: 564652
type: SpeciesReference

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species: 564916
type: SpeciesReference

570140
value: 0.0
type: LocalParameter

569573
value: 0.0
type: LocalParameter

573045
value: 0.0
type: LocalParameter

569460
value: 0.0
type: LocalParameter

565304
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Ribulose1,5-bisphosphate
type: Species

277961
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species: 566230
type: SpeciesReference

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species: 564369
type: SpeciesReference

574755
value: 1000.0
type: LocalParameter

573695
value: 1000.0
type: LocalParameter

237808
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species: 564354
type: SpeciesReference

568335
reactant: 317024
notes: GPR_ASSOCIATION: RSP_2578 GENE_LIST: RSP_2578; SUBSYSTEM: Methane metabolism Equation: Methanol + NAD+ <=> Formaldehyde + NADH + H+ Confidence Level: 3
product: 317037
fast: false
kinetic law: 317073
product: 317061
reactant: 317012
name: putative PQQ dehydrogenase protein
reversible: true
type: Reaction
product: 317049

255650
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species: 564721
type: SpeciesReference

569574
value: 0.0
type: LocalParameter

252968
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species: 564811
type: SpeciesReference

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species: 564366
type: SpeciesReference

570820
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type: LocalParameter

573696
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type: LocalParameter

570141
value: 0.0
type: LocalParameter

256519
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species: 565277
type: SpeciesReference

569461
value: 0.0
type: LocalParameter

573046
value: -1000.0
type: LocalParameter

575106
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type: LocalParameter

298961
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species: 564360
type: SpeciesReference

273368
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species: 565986
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species: 564535
type: SpeciesReference

242504
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species: 564646
type: SpeciesReference

574754
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type: LocalParameter

568334
notes: GPR_ASSOCIATION: RSP_0281 GENE_LIST: RSP_0281; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Magnesium protoporphyrin monomethyl ester + H2O <=> Divinylprotochlorophyllide + 6 H+ Confidence Level: 3
reversible: false
product: 316988
fast: false
reactant: 316964
reactant: 316951
name: magnesium-protoporphyrin IX monomethylester oxidative cyclase (Anaerobic)
type: Reaction
kinetic law: 317000
product: 316976

276013
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species: 564811
type: SpeciesReference

569571
value: -1000.0
type: LocalParameter

575109
value: 0.0
type: LocalParameter

275060
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species: 564463
type: SpeciesReference

251454
stoichiometry: 1.0
species: 564372
type: SpeciesReference

574753
value: 0.0
type: LocalParameter

573047
value: 1000.0
type: LocalParameter

565241
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: O-Phospho-L-serine
type: Species

258335
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species: 564348
type: SpeciesReference

568333
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product: 316927
reactant: 316915
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: H+[e] <=> Confidence Level:
fast: false
reversible: false
name: H+ exchange
type: Reaction

277372
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species: 564369
type: SpeciesReference

565006
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5,10-Methenyltetrahydrofolate
type: Species

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species: 564694
type: SpeciesReference

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species: 564348
type: SpeciesReference

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species: 564802
type: SpeciesReference

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species: 566084
type: SpeciesReference

569572
value: 1000.0
type: LocalParameter

238001
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species: 564348
type: SpeciesReference

573270
value: -1000.0
type: LocalParameter

573698
value: 0.0
type: LocalParameter

575108
value: 1000.0
type: LocalParameter

293217
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species: 566130
type: SpeciesReference

572480
value: 0.0
type: LocalParameter

565301
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-(4-Hydroxyphenyl)pyruvate
type: Species

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species: 564622
type: SpeciesReference

574758
value: 0.0
type: LocalParameter

565694
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Deoxy-D-manno-octulosonate8-phosphate
type: Species

570290
value: 0.0
type: LocalParameter

573054
value: 0.0
type: LocalParameter

298622
stoichiometry: 1.0
species: 566461
type: SpeciesReference

286394
stoichiometry: 1.0
species: 564904
type: SpeciesReference

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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 5-Methylcytosine[e]
type: Species

292735
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species: 566260
type: SpeciesReference

568986
value: 0.0
type: LocalParameter

242807
stoichiometry: 1.0
species: 564535
type: SpeciesReference

569146
value: 1000.0
type: LocalParameter

568331
kinetic law: 316867
product: 316855
reactant: 316843
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 5'-Deoxyadenosine[e] <=> Confidence Level:
fast: false
reversible: false
name: 5'-Deoxyadenosine exchange
type: Reaction

573267
value: 0.0
type: LocalParameter

315419
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species: 566838
type: SpeciesReference

277517
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species: 565069
type: SpeciesReference

248177
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species: 564351
type: SpeciesReference

564622
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Phospho-alpha-D-ribose1-diphosphate
type: Species

574533
value: 0.0
type: LocalParameter

574759
value: -1000.0
type: LocalParameter

262103
stoichiometry: 1.0
species: 564360
type: SpeciesReference

566834
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 5-Methylcytosine[e]
type: Species

574420
value: 1000.0
type: LocalParameter

573850
value: 0.0
type: LocalParameter

573053
value: 1000.0
type: LocalParameter

311548
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species: 565952
type: SpeciesReference

255358
stoichiometry: 1.0
species: 565325
type: SpeciesReference

568985
value: 0.0
type: LocalParameter

316301
stoichiometry: 9.95E-4
species: 564396
type: SpeciesReference

569145
value: 0.0
type: LocalParameter

267998
stoichiometry: 1.0
species: 565316
type: SpeciesReference

575260
value: -1000.0
type: LocalParameter

568332
kinetic law: 316903
product: 316891
reactant: 316879
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 5'-Deoxyadenosine[e] <=> 5'-Deoxyadenosine[p] Confidence Level: 2
fast: false
reversible: true
name: 5'-Deoxyadenosine transport via diffusion
type: Reaction

569144
value: 0.0
type: LocalParameter

294717
stoichiometry: 1.0
species: 566107
type: SpeciesReference

573581
value: 0.0
type: LocalParameter

297259
stoichiometry: 1.0
species: 564345
type: SpeciesReference

573851
value: 0.0
type: LocalParameter

573056
value: 0.0
type: LocalParameter

574530
value: 1000.0
type: LocalParameter

305108
stoichiometry: 1.0
species: 564535
type: SpeciesReference

568984
value: 1000.0
type: LocalParameter

289827
stoichiometry: 1.0
species: 566064
type: SpeciesReference

247444
stoichiometry: 1.0
species: 566263
type: SpeciesReference

569039
value: 0.0
type: LocalParameter

260667
stoichiometry: 1.0
species: 565927
type: SpeciesReference

565310
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Deoxy-D-manno-octulosonate
type: Species

574757
value: 0.0
type: LocalParameter

569143
value: 0.0
type: LocalParameter

573269
value: 0.0
type: LocalParameter

568330
type: Reaction
kinetic law: 316831
name: 5'-Deoxyadenosine via proton symport
reversible: true
product: 316819
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 5'-Deoxyadenosine[p] + H+[p] <=> 5'-5'-Deoxyadenosine + H+ Confidence Level: 1
reactant: 316783
fast: false
product: 316807
reactant: 316795

575262
value: 1000.0
type: LocalParameter

566836
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Aminoacetaldehyde[p]
type: Species

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notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 4-Aminobutyraldehyde[e] <=> 4-Aminobutyraldehyde[p] Confidence Level: 2
fast: false
reversible: true
name: 4-Aminobutyraldehyde transport via diffusion
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568968
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type: LocalParameter

298212
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species: 564381
type: SpeciesReference

301402
stoichiometry: 1.0
species: 566530
type: SpeciesReference

569588
value: -1000.0
type: LocalParameter

305241
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species: 566645
type: SpeciesReference

573262
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type: LocalParameter

575116
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type: LocalParameter

240539
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species: 564381
type: SpeciesReference

565676
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5'-Phosphoribosyl-N-formylglycinamide
type: Species

570835
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type: LocalParameter

260438
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species: 565883
type: SpeciesReference

271613
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species: 564393
type: SpeciesReference

572472
value: 1000.0
type: LocalParameter

294923
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species: 566262
type: SpeciesReference

574526
value: 0.0
type: LocalParameter

570155
value: 0.0
type: LocalParameter

564619
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Glyceraldehyde3-phosphate
type: Species

283307
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species: 564354
type: SpeciesReference

305989
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species: 566665
type: SpeciesReference

568969
value: 0.0
type: LocalParameter

259832
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species: 564664
type: SpeciesReference

297958
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species: 566460
type: SpeciesReference

282787
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species: 564535
type: SpeciesReference

247213
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species: 566108
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254471
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species: 564895
type: SpeciesReference

569589
value: 1000.0
type: LocalParameter

276719
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species: 564622
type: SpeciesReference

575115
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type: LocalParameter

566628
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Cobinamide[p]
type: Species

570156
value: -1000.0
type: LocalParameter

565679
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Carboxybiotin-carboxyl-carrierprotein
type: Species

248384
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species: 566438
type: SpeciesReference

311670
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species: 564535
type: SpeciesReference

565250
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Formyl-L-glutamate
type: Species

565319
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: GDP-4-dehydro-6-deoxy-D-mannose
type: Species

565105
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Deoxy-D-ribose5-phosphate
type: Species

570837
value: 0.0
type: LocalParameter

277673
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species: 564369
type: SpeciesReference

566629
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Cobinamide[e]
type: Species

573260
value: 1000.0
type: LocalParameter

572470
value: -1000.0
type: LocalParameter

236547
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species: 564408
type: SpeciesReference

570157
value: 1000.0
type: LocalParameter

573038
value: 0.0
type: LocalParameter

267817
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species: 565253
type: SpeciesReference

574528
value: 0.0
type: LocalParameter

304020
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species: 566608
type: SpeciesReference

568346
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product: 317760
reactant: 317748
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 3-Sulfopyruvate[e] <=> 3-Sulfopyruvate[p] Confidence Level: 2
fast: false
reversible: true
name: 3-Sulfopyruvate transport via diffusion
type: Reaction

243739
stoichiometry: 1.0
species: 566393
type: SpeciesReference

251442
stoichiometry: 1.0
species: 564405
type: SpeciesReference

565253
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-N-acetylmuramate
type: Species

570150
value: -1000.0
type: LocalParameter

573035
value: -1000.0
type: LocalParameter

569583
value: 0.0
type: LocalParameter

238705
stoichiometry: 1.0
species: 565559
type: SpeciesReference

569470
value: -1000.0
type: LocalParameter

570830
value: 0.0
type: LocalParameter

568345
kinetic law: 317736
product: 317724
reactant: 317712
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 3-Sulfopyruvate[e] <=> Confidence Level:
fast: false
reversible: false
name: 3-Sulfopyruvate exchange
type: Reaction

565018
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Deoxyuridine
type: Species

277384
stoichiometry: 1.0
species: 564679
type: SpeciesReference

293229
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species: 566128
type: SpeciesReference

573036
value: 1000.0
type: LocalParameter

565313
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Malonyl-[acyl-carrierprotein]
type: Species

288308
stoichiometry: 1.0
species: 564348
type: SpeciesReference

290666
stoichiometry: 1.0
species: 564348
type: SpeciesReference

251732
stoichiometry: 1.0
species: 565511
type: SpeciesReference

286069
stoichiometry: 1.0
species: 564372
type: SpeciesReference

569471
value: 1000.0
type: LocalParameter

569584
value: -1000.0
type: LocalParameter

574740
value: 0.0
type: LocalParameter

278312
stoichiometry: 1.0
species: 564366
type: SpeciesReference

569585
value: 1000.0
type: LocalParameter

316486
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species: 564345
type: SpeciesReference

317435
stoichiometry: 1.0
species: 564348
type: SpeciesReference

267700
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species: 565811
type: SpeciesReference

568348
kinetic law: 317868
product: 317856
reactant: 317844
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 4-Aminobutyraldehyde[e] <=> Confidence Level:
fast: false
reversible: false
name: 4-Aminobutyraldehyde exchange
type: Reaction

282871
stoichiometry: 1.0
species: 565102
type: SpeciesReference

287883
stoichiometry: 1.0
species: 564535
type: SpeciesReference

565102
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Deoxy-D-ribose1-phosphate
type: Species

574743
value: -1000.0
type: LocalParameter

281036
stoichiometry: 1.0
species: 565972
type: SpeciesReference

575119
value: 1000.0
type: LocalParameter

565316
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-N-acetylmuramoyl-L-alanine
type: Species

570152
value: 1000.0
type: LocalParameter

569586
value: 0.0
type: LocalParameter

288838
stoichiometry: 1.0
species: 564535
type: SpeciesReference

570832
value: 0.0
type: LocalParameter

278904
stoichiometry: 1.0
species: 565087
type: SpeciesReference

568347
product: 317808
product: 317820
fast: false
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 4-Aminobutyraldehyde[p] + H+[p] <=> 4-Aminobutyraldehyde + H+ Confidence Level: 1
kinetic law: 317832
reversible: true
name: 4-Aminobutyraldehyde via proton symport
reactant: 317784
type: Reaction
reactant: 317796

565529
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Shikimate3-phosphate
type: Species

273356
stoichiometry: 1.0
species: 564363
type: SpeciesReference

574742
value: 0.0
type: LocalParameter

272954
stoichiometry: 1.0
species: 565847
type: SpeciesReference

570833
value: -1000.0
type: LocalParameter

570153
value: 0.0
type: LocalParameter

569473
value: 0.0
type: LocalParameter

573034
value: 0.0
type: LocalParameter

573863
value: -1000.0
type: LocalParameter

295071
stoichiometry: 1.0
species: 566280
type: SpeciesReference

565894
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-3-Hydroxyhexanoyl-[acp]
type: Species

297247
stoichiometry: 1.0
species: 565099
type: SpeciesReference

569132
value: 0.0
type: LocalParameter

573593
value: 0.0
type: LocalParameter

575273
value: 1000.0
type: LocalParameter

575120
value: 0.0
type: LocalParameter

574744
value: 1000.0
type: LocalParameter

294705
stoichiometry: 1.0
species: 566108
type: SpeciesReference

573258
value: 0.0
type: LocalParameter

568341
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reactant: 317435
kinetic law: 317507
type: Reaction
reactant: 317447
fast: false
product: 317471
notes: GPR_ASSOCIATION: RSP_4299 and ? GENE_LIST: RSP_4299; SUBSYSTEM: Aminoacyl-tRNA biosynthesis Equation: ATP + L-Aspartate + tRNA(Asn) <=> AMP + Diphosphate + L-Aspartyl-tRNA(Asn) Confidence Level: 1
reactant: 317459
name: L-Aspartate:tRNAAsp ligase (AMP-forming)
product: 317483
reversible: false

569027
value: 0.0
type: LocalParameter

304478
stoichiometry: 1.0
species: 566621
type: SpeciesReference

289839
stoichiometry: 1.0
species: 564366
type: SpeciesReference

568972
value: 1000.0
type: LocalParameter

566848
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 3-Sulfopyruvate[p]
type: Species

573043
value: 0.0
type: LocalParameter

565895
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-3-Hydroxybutanoyl-CoA
type: Species

252980
stoichiometry: 1.0
species: 564345
type: SpeciesReference

569131
value: 0.0
type: LocalParameter

565322
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Glucono-1,5-lactone6-phosphate
type: Species

260655
stoichiometry: 1.0
species: 564345
type: SpeciesReference

573592
value: 0.0
type: LocalParameter

575274
value: 0.0
type: LocalParameter

568342
kinetic law: 317591
reactant: 317543
product: 317579
reactant: 317531
type: Reaction
reversible: false
reactant: 317519
product: 317555
notes: GPR_ASSOCIATION: (RSP_4327 or RSP_4346) and ? GENE_LIST: RSP_4327; RSP_4346; SUBSYSTEM: Aminoacyl-tRNA biosynthesis Equation: ATP + L-Glutamate + tRNA(Gln) <=> AMP + Diphosphate + L-Glutamyl-tRNA(Gln) Confidence Level: 1
fast: false
product: 317567

569026
value: 0.0
type: LocalParameter

308174
stoichiometry: 1.0
species: 566719
type: SpeciesReference

300568
stoichiometry: 1.0
species: 565913
type: SpeciesReference

568971
value: 0.0
type: LocalParameter

565682
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Succinyl-LL-2,6-diaminoheptanedioate
type: Species

574520
value: 0.0
type: LocalParameter

292723
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species: 566255
type: SpeciesReference

298634
stoichiometry: 1.0
species: 564366
type: SpeciesReference

566847
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 5'-Deoxyadenosine[e]
type: Species

573042
value: 1000.0
type: LocalParameter

573861
value: 0.0
type: LocalParameter

573256
value: 0.0
type: LocalParameter

573369
value: -1000.0
type: LocalParameter

574746
value: 0.0
type: LocalParameter

569134
value: 1000.0
type: LocalParameter

568343
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product: 317627
reactant: 317615
reactant: 317603
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Ubiquinone and other terpenoid-quinone biosynthesis Equation: 4-Hydroxybenzoate + Pyruvate <=> Chorismate Confidence Level: 1
fast: false
reversible: false
type: Reaction

569029
value: 1000.0
type: LocalParameter

311452
stoichiometry: 1.0
species: 565802
type: SpeciesReference

300424
stoichiometry: 1.0
species: 564601
type: SpeciesReference

575271
value: -1000.0
type: LocalParameter

570840
value: 0.0
type: LocalParameter

568974
value: 0.0
type: LocalParameter

566846
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 5'-Deoxyadenosine[e]
type: Species

573862
value: 0.0
type: LocalParameter

573255
value: 1000.0
type: LocalParameter

573590
value: 1000.0
type: LocalParameter

573368
value: 0.0
type: LocalParameter

248165
stoichiometry: 1.0
species: 566436
type: SpeciesReference

569133
value: 0.0
type: LocalParameter

574747
value: 0.0
type: LocalParameter

565897
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Poly-beta-hydroxybutyrate
type: Species

564610
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Choline
type: Species

568344
type: Reaction
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 3-Sulfopyruvate[p] + H+[p] <=> 3-Sulfopyruvate + H+ Confidence Level: 1
name: 3-Sulfopyruvate via proton symport
reversible: true
product: 317676
reactant: 317664
product: 317688
fast: false
reactant: 317652
kinetic law: 317700

569028
value: 0.0
type: LocalParameter

298949
stoichiometry: 1.0
species: 565859
type: SpeciesReference

568973
value: 0.0
type: LocalParameter

247431
stoichiometry: 1.0
species: 566262
type: SpeciesReference

568490
value: 0.0
type: LocalParameter

574748
value: 0.0
type: LocalParameter

574522
value: 0.0
type: LocalParameter

281192
stoichiometry: 1.0
species: 566243
type: SpeciesReference

565745
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-3-O-(3-hydroxytetradecanoyl)-N-acetylglucosamine
type: Species

565898
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Acetyl-[acyl-carrierprotein]
type: Species

575124
value: 1000.0
type: LocalParameter

564613
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glycerol
type: Species

571097
value: 1000.0
type: LocalParameter

573040
value: -1000.0
type: LocalParameter

573597
value: 0.0
type: LocalParameter

315599
stoichiometry: 1.0
species: 564345
type: SpeciesReference

263830
stoichiometry: 2.0
species: 564348
type: SpeciesReference

568976
value: 1000.0
type: LocalParameter

291343
stoichiometry: 1.0
species: 564366
type: SpeciesReference

247985
stoichiometry: 1.0
species: 566326
type: SpeciesReference

298066
stoichiometry: 1.0
species: 564366
type: SpeciesReference

282207
stoichiometry: 1.0
species: 564381
type: SpeciesReference

574523
value: -1000.0
type: LocalParameter

573596
value: 1000.0
type: LocalParameter

291646
stoichiometry: 1.0
species: 564366
type: SpeciesReference

568491
value: 0.0
type: LocalParameter

273137
stoichiometry: 1.0
species: 565754
type: SpeciesReference

571098
value: 0.0
type: LocalParameter

570158
value: 0.0
type: LocalParameter

236766
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species: 564688
type: SpeciesReference

304580
stoichiometry: 1.0
species: 564985
type: SpeciesReference

281252
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species: 565965
type: SpeciesReference

565685
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Dehydro-3-deoxy-6-phospho-D-gluconate
type: Species

573253
value: -1000.0
type: LocalParameter

573868
value: 0.0
type: LocalParameter

573869
value: 0.0
type: LocalParameter

568975
value: 0.0
type: LocalParameter

575270
value: 0.0
type: LocalParameter

293445
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species: 566152
type: SpeciesReference

565472
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Dehydroshikimate
type: Species

568492
value: -1000.0
type: LocalParameter

571099
value: 0.0
type: LocalParameter

316166
stoichiometry: 0.024071
species: 566863
type: SpeciesReference

574524
value: 1000.0
type: LocalParameter

569130
value: 1000.0
type: LocalParameter

575122
value: 0.0
type: LocalParameter

306773
stoichiometry: 1.0
species: 566684
type: SpeciesReference

573865
value: 1000.0
type: LocalParameter

260997
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species: 564378
type: SpeciesReference

266151
stoichiometry: 1.0
species: 565039
type: SpeciesReference

568978
value: 0.0
type: LocalParameter

565748
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
type: Species

568493
value: 1000.0
type: LocalParameter

568340
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fast: false
reactant: 317374
type: Reaction
product: 317399
notes: GPR_ASSOCIATION: RSP_2567 and RSP_2568 GENE_LIST: RSP_2567; RSP_2568; SUBSYSTEM: Sulfolipid biosynthesis Equation: UDP-6-sulfoquinovose + 1,2-Diacyl-sn-glycerol <=> Sulfoquinovosyldiacylglycerol + UDP + 2 H+ Confidence Level: 4
product: 317387
kinetic law: 317423
name: SQDG synthase
reversible: true
reactant: 317362

272735
stoichiometry: 1.0
species: 564366
type: SpeciesReference

575123
value: -1000.0
type: LocalParameter

573594
value: 0.0
type: LocalParameter

573251
value: 0.0
type: LocalParameter

573866
value: 0.0
type: LocalParameter

573489
value: 0.0
type: LocalParameter

292494
stoichiometry: 1.0
species: 564345
type: SpeciesReference

568977
value: 0.0
type: LocalParameter

303899
stoichiometry: 1.0
species: 566255
type: SpeciesReference

311341
stoichiometry: 1.0
species: 564622
type: SpeciesReference

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species: 564351
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283955
stoichiometry: 1.0
species: 564838
type: SpeciesReference

250823
stoichiometry: 1.0
species: 564345
type: SpeciesReference

573363
value: -1000.0
type: LocalParameter

238146
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species: 564523
type: SpeciesReference

263721
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species: 565943
type: SpeciesReference

272807
stoichiometry: 1.0
species: 564366
type: SpeciesReference

570002
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type: LocalParameter

574413
value: 0.0
type: LocalParameter

307304
stoichiometry: 1.0
species: 566490
type: SpeciesReference

568494
value: 0.0
type: LocalParameter

265364
stoichiometry: 1.0
species: 564366
type: SpeciesReference

257658
stoichiometry: 1.0
species: 565352
type: SpeciesReference

569139
value: 0.0
type: LocalParameter

293554
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species: 566164
type: SpeciesReference

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species: 564694
type: SpeciesReference

238292
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species: 564427
type: SpeciesReference

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species: 564892
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species: 566314
type: SpeciesReference

573362
value: 0.0
type: LocalParameter

565742
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxododecanoyl-CoA
type: Species

573487
value: 0.0
type: LocalParameter

565475
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Ureidopropionate
type: Species

566840
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Ethanolamine[p]
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5'-Methylthioadenosine
type: Species

570001
value: 0.0
type: LocalParameter

568495
value: 0.0
type: LocalParameter

316056
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species: 564868
type: SpeciesReference

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stoichiometry: 1.0
species: 564478
type: SpeciesReference

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species: 566216
type: SpeciesReference

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value: 0.0
type: LocalParameter

246031
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species: 566147
type: SpeciesReference

288947
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species: 564369
type: SpeciesReference

306907
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species: 566688
type: SpeciesReference

243173
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species: 564378
type: SpeciesReference

573599
value: 0.0
type: LocalParameter

573361
value: 0.0
type: LocalParameter

276876
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species: 564396
type: SpeciesReference

260888
stoichiometry: 1.0
species: 564366
type: SpeciesReference

315116
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species: 566830
type: SpeciesReference

564724
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Lauroyl-KDO2-lipidIV(A)
type: Species

574415
value: 1000.0
type: LocalParameter

289537
stoichiometry: 1.0
species: 566034
type: SpeciesReference

264566
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species: 564345
type: SpeciesReference

569021
value: 1000.0
type: LocalParameter

573486
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type: LocalParameter

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initial concentration: NaN
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name: L-Prolyl-tRNA(Pro)
type: Species

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name: 5'-Deoxyadenosine[p]
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initial concentration: NaN
initial amount: NaN
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initial concentration: NaN
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in compartment: 564339
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species: 565505
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575238
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initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Arginyl-tRNA(Arg)
type: Species

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initial concentration: NaN
initial amount: NaN
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name: 3-Hydroxyisovaleryl-CoA
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initial concentration: NaN
initial amount: NaN
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species: 566402
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species: 566107
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565223
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initial concentration: NaN
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573178
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has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: 5'-Deoxyadenosine
type: Species

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species: 564369
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has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Chlorophyllidea
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species: 564769
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has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Asparaginyl-tRNA(Asn)
type: Species

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has only substance units: false
initial concentration: NaN
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name: Dihydropteroate
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type: LocalParameter

565781
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
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type: Species

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type: LocalParameter

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has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Acetyl-L-glutamate5-semialdehyde
type: Species

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species: 564958
type: SpeciesReference

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species: 564481
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initial concentration: NaN
initial amount: NaN
in compartment: 564339
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species: 564348
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species: 564535
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type: LocalParameter

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has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: 3-Oxohexanoyl-[acp]
type: Species

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species: 564502
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568359
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product: 318389
reactant: 318377
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: H+[e] <=> H+[p] Confidence Level: 2
fast: false
reversible: true
name: H+ transport via diffusion
type: Reaction

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species: 565943
type: SpeciesReference

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has only substance units: false
initial concentration: NaN
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name: UDP-6-sulfoquinovose
type: Species

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species: 565943
type: SpeciesReference

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type: LocalParameter

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species: 566360
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type: LocalParameter

275084
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species: 566504
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product: 318341
type: Reaction
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 3'-CMP[p] + H+[p] <=> 3'-CMP + H+ Confidence Level: 1
fast: false
product: 318353
name: 3'-CMP transport via proton symport
reversible: true
reactant: 318329
reactant: 318316

568959
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type: LocalParameter

565325
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
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species: 564345
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initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 1-Acyl-sn-glycerol3-phosphate
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reactant: 318256
type: Reaction
product: 318292
kinetic law: 318304
reactant: 318268
name: 3'-GMP transport via proton symport
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 3'-GMP[p] + H+[p] <=> 3'-GMP + H+ Confidence Level: 1

250726
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species: 566441
type: SpeciesReference

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type: LocalParameter

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species: 564727
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species: 564366
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species: 566350
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species: 564345
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initial concentration: NaN
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in compartment: 564339
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species: 564345
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species: 564700
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species: 564354
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initial concentration: NaN
initial amount: NaN
in compartment: 564338
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type: Species

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initial concentration: NaN
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name: CDP
type: Species

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species: 564351
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species: 566804
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initial concentration: NaN
initial amount: NaN
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name: 4-Hydroxy-2-oxoglutarate
type: Species

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type: LocalParameter

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type: LocalParameter

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species: 564418
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species: 564366
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species: 565865
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species: 566368
type: SpeciesReference

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initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glyceronephosphate
type: Species

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type: LocalParameter

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type: LocalParameter

573677
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type: LocalParameter

565027
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Cytidine
type: Species

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type: LocalParameter

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species: 566069
type: SpeciesReference

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type: LocalParameter

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species: 565916
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species: 565801
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294959
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species: 566266
type: SpeciesReference

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type: LocalParameter

575128
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type: LocalParameter

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type: LocalParameter

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species: 564345
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species: 566645
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species: 564345
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type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Methyl-5-(2-phosphoethyl)-thiazole
type: Species

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type: LocalParameter

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species: 564345
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species: 564369
type: SpeciesReference

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type: LocalParameter

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species: 564369
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species: 564348
type: SpeciesReference

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type: LocalParameter

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species: 566400
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species: 564366
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species: 566303
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species: 564538
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species: 566685
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species: 565906
type: SpeciesReference

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type: LocalParameter

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has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Dethiobiotin[e]
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Fe2[p]
type: Species

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type: LocalParameter

565331
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-(Imidazol-4-yl)-2-oxopropylphosphate
type: Species

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product: 318027
reactant: 318014
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: D-Proline[e] <=> Confidence Level:
fast: false
reversible: false
name: D-Proline exchange
type: Reaction

569166
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type: LocalParameter

565888
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Mannitol
type: Species

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species: 564345
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species: 564348
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Zinc[e]
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: Dethiobiotin[e]
type: Species

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product: 318063
reactant: 318051
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: D-Proline[e] <=> D-Proline[p] Confidence Level: 2
fast: false
reversible: true
name: D-Proline transport via diffusion
type: Reaction

264686
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species: 564961
type: SpeciesReference

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species: 564366
type: SpeciesReference

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Glycerate
type: Species

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type: LocalParameter

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type: LocalParameter

573453
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type: LocalParameter

575135
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type: LocalParameter

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type: LocalParameter

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species: 564871
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species: 564535
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type: LocalParameter

566818
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Methanethiol[e]
type: Species

566198
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Fe2[e]
type: Species

247997
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species: 566327
type: SpeciesReference

573181
value: 0.0
type: LocalParameter

256095
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species: 564610
type: SpeciesReference

291331
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species: 566152
type: SpeciesReference

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stoichiometry: 1.0
species: 564348
type: SpeciesReference

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species: 564369
type: SpeciesReference

573879
value: 0.0
type: LocalParameter

573456
value: 0.0
type: LocalParameter

565886
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: di-trans,poly-cis-Undecaprenylphosphate
type: Species

281180
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species: 564345
type: SpeciesReference

570123
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type: LocalParameter

564601
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Oxobutanoate
type: Species

569164
value: 0.0
type: LocalParameter

270379
stoichiometry: 1.0
species: 565538
type: SpeciesReference

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species: 564402
type: SpeciesReference

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stoichiometry: 1.0
species: 565763
type: SpeciesReference

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value: 0.0
type: LocalParameter

255963
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species: 564442
type: SpeciesReference

568963
value: 0.0
type: LocalParameter

253064
stoichiometry: 1.0
species: 565343
type: SpeciesReference

573180
value: 0.0
type: LocalParameter

565673
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-4'-Phosphopantothenoyl-L-cysteine
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: meso-2,6-Diaminoheptanedioate
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Methanethiol[p]
type: Species

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value: 0.0
type: LocalParameter

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stoichiometry: 1.0
species: 564345
type: SpeciesReference

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value: 0.0
type: LocalParameter

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stoichiometry: 1.0
species: 564369
type: SpeciesReference

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value: 0.0
type: LocalParameter

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species: 564535
type: SpeciesReference

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value: 0.0
type: LocalParameter

568350
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reactant: 317941
product: 317953
fast: false
product: 317965
kinetic law: 318002
reversible: false
type: Reaction
product: 317978
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + D-Proline[p] <=> ADP + H+ + Orthophosphate + D-Proline Confidence Level: 1
name: ABC D-Proline transporter
product: 317990
reactant: 317917

236778
stoichiometry: 1.0
species: 564345
type: SpeciesReference

570852
value: 0.0
type: LocalParameter

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value: 0.0
type: LocalParameter

245200
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species: 566413
type: SpeciesReference

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value: 1000.0
type: LocalParameter

311464
stoichiometry: 1.0
species: 564363
type: SpeciesReference

568355
product: 318160
reactant: 318148
reactant: 318136
type: Reaction
product: 318172
reversible: true
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 3'-AMP[p] + H+[p] <=> 3'-AMP + H+ Confidence Level: 1
fast: false
name: 3'-AMP transport via proton symport
kinetic law: 318184

298791
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species: 564369
type: SpeciesReference

575130
value: 1000.0
type: LocalParameter

574556
value: -1000.0
type: LocalParameter

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species: 566348
type: SpeciesReference

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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glycolaldehyde[e]
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (4S)-4,6-Dihydroxy-2,5-dioxohexanoate
type: Species

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species: 566259
type: SpeciesReference

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species: 565084
type: SpeciesReference

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species: 564709
type: SpeciesReference

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type: LocalParameter

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value: 1000.0
type: LocalParameter

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species: 564661
type: SpeciesReference

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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: Fe2[e]
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species: 564345
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species: 564958
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type: LocalParameter

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species: 564345
type: SpeciesReference

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value: 0.0
type: LocalParameter

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value: 0.0
type: LocalParameter

568356
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type: Reaction
name: 3'-UMP transport via proton symport
reversible: true
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 3'-UMP[p] + H+[p] <=> 3'-UMP + H+ Confidence Level: 1
product: 318220
reactant: 318196
product: 318232
fast: false
reactant: 318208

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value: 0.0
type: LocalParameter

570128
value: 1000.0
type: LocalParameter

575131
value: 0.0
type: LocalParameter

574557
value: 1000.0
type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: [Dihydrolipoyllysine-residuesuccinyltransferase]
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Glucuronate
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glycolaldehyde[e]
type: Species

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value: 0.0
type: LocalParameter

573874
value: 0.0
type: LocalParameter

570850
value: 0.0
type: LocalParameter

568960
value: 1000.0
type: LocalParameter

568353
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reactant: 318088
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Demand reactions Equation: 3,4,3',4'-Tetrahydrospirilloxanthin <=> Confidence Level: 0
fast: false
reversible: false
name: Demand reaction for minor carotenoid
type: Reaction

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species: 564535
type: SpeciesReference

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species: 565745
type: SpeciesReference

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species: 564451
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species: 564351
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species: 564402
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species: 566279
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: ProteinN6-(lipoyl)lysine
type: Species

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type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Xylitol[p]
type: Species

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species: 565793
type: SpeciesReference

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reactant: 318112
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Demand reactions Equation: Poly-beta-hydroxybutyrate <=> Confidence Level: 0
fast: false
reversible: false
name: Demand reaction for PHB
type: Reaction

569167
value: 0.0
type: LocalParameter

569014
value: 0.0
type: LocalParameter

575133
value: 0.0
type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Amino-6-(5'-phosphoribosylamino)uracil
type: Species

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value: 0.0
type: LocalParameter

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type: LocalParameter

566812
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Dethiobiotin[p]
type: Species

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value: 1000.0
type: LocalParameter

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species: 564348
type: SpeciesReference

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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: Apoprotein
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species: 564484
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type: LocalParameter

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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Xylitol[e]
type: Species

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boundary condition: false
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initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-(5-Phospho-D-ribosylaminoformimino)-1-(5-phosphoribosyl)-
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type: LocalParameter

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type: LocalParameter

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species: 564354
type: SpeciesReference

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type: LocalParameter

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species: 566860
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type: LocalParameter

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type: LocalParameter

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species: 566082
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type: LocalParameter

565562
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: N-(L-Arginino)succinate
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Xylitol[e]
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species: 566836
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value: 0.0
type: LocalParameter

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value: 1000.0
type: LocalParameter

258130
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species: 564535
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value: 0.0
type: LocalParameter

574626
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type: LocalParameter

569012
value: 0.0
type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: UDP-L-iduronate
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species: 564676
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species: 564535
type: SpeciesReference

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value: 1000.0
type: LocalParameter

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species: 564345
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species: 565415
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species: 564357
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species: 564565
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species: 564375
type: SpeciesReference

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Cholinephosphate[p]
type: Species

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value: 0.0
type: LocalParameter

573189
value: -1000.0
type: LocalParameter

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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Cu2+[e]
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type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: Cobamidecoenzyme
type: Species

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type: LocalParameter

262235
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species: 564345
type: SpeciesReference

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Protoporphyrin
type: Species

575241
value: 0.0
type: LocalParameter

574623
value: 1000.0
type: LocalParameter

570018
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type: LocalParameter

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species: 565910
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species: 564348
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species: 566724
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569010
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570017
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type: LocalParameter

283344
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species: 565610
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species: 566280
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species: 564348
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species: 566424
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type: LocalParameter

570016
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type: LocalParameter

264578
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species: 566248
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575243
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type: LocalParameter

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has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: Zinc[p]
type: Species

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type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: (S)-Hydroxyhexanoyl-CoA
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species: 566226
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type: LocalParameter

304593
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species: 566254
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: Cholinephosphate[e]
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type: LocalParameter

246067
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species: 566151
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species: 566379
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species: 565859
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species: 564481
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value: 1000.0
type: LocalParameter

570015
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type: LocalParameter

574404
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575244
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type: LocalParameter

281072
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species: 564913
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boundary condition: false
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initial concentration: NaN
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name: Zinc
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species: 564354
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type: LocalParameter

287980
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species: 564535
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type: LocalParameter

566705
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initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Cholinephosphate[e]
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species: 566600
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238765
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species: 566007
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575245
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type: LocalParameter

565777
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has only substance units: false
initial concentration: NaN
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name: N-(5'-Phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-D-
type: Species

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573185
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type: LocalParameter

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initial concentration: NaN
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name: Zinc[e]
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species: 564535
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name: Ribitol[e]
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type: LocalParameter

570013
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565778
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initial concentration: NaN
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name: 2,3,2',3'-Tetrakis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6-beta-
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species: 564369
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initial concentration: NaN
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name: 3-Phospho-D-glycerate
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name: Ribitol[p]
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type: LocalParameter

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initial concentration: NaN
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name: D-Fructuronate
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281397
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species: 566232
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species: 565673
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species: 564375
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species: 564369
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300592
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species: 566332
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species: 564369
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name: N-Formylmethionyl-tRNA
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name: Adenine[p]
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species: 564348
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name: Adenine[e]
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name: D-Alanyl-D-alanine
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575247
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568479
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type: LocalParameter

266126
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species: 564345
type: SpeciesReference

573390
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type: LocalParameter

257791
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species: 564381
type: SpeciesReference

246708
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species: 566040
type: SpeciesReference

276134
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species: 564366
type: SpeciesReference

569450
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type: LocalParameter

573993
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type: LocalParameter

304152
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species: 566612
type: SpeciesReference

573681
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type: LocalParameter

273488
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species: 564366
type: SpeciesReference

565120
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dTDP-4-dehydro-6-deoxy-L-mannose
type: Species

573168
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type: LocalParameter

568478
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type: LocalParameter

268276
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species: 565808
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species: 564345
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species: 566248
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species: 564345
type: SpeciesReference

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type: LocalParameter

573391
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type: LocalParameter

251865
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species: 566351
type: SpeciesReference

290533
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species: 564369
type: SpeciesReference

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Formamide
type: Species

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species: 566452
type: SpeciesReference

573682
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type: LocalParameter

565547
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dTDP-6-deoxy-L-mannose
type: Species

306327
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species: 566673
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: O-Acetyl-L-serine
type: Species

565033
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Shikimate
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Isocitrate
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-
type: Species

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species: 564345
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569452
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type: LocalParameter

573166
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type: LocalParameter

573991
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type: LocalParameter

574610
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type: LocalParameter

565235
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Phosphoglycolate
type: Species

257077
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species: 564405
type: SpeciesReference

242626
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species: 564646
type: SpeciesReference

255771
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species: 564378
type: SpeciesReference

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type: LocalParameter

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species: 564345
type: SpeciesReference

303079
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species: 566580
type: SpeciesReference

266730
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species: 564619
type: SpeciesReference

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type: LocalParameter

316190
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species: 564351
type: SpeciesReference

565448
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glycyl-tRNA(Gly)
type: Species

238993
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species: 565499
type: SpeciesReference

573680
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type: LocalParameter

573990
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type: LocalParameter

273331
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species: 564357
type: SpeciesReference

574765
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572491
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type: LocalParameter

573011
value: 1000.0
type: LocalParameter

573685
value: 0.0
type: LocalParameter

316460
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species: 564366
type: SpeciesReference

573884
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type: LocalParameter

570853
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type: LocalParameter

257682
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species: 564778
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568947
value: 1000.0
type: LocalParameter

243715
stoichiometry: 1.0
species: 564399
type: SpeciesReference

266017
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species: 564751
type: SpeciesReference

574764
value: 0.0
type: LocalParameter

306218
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species: 566672
type: SpeciesReference

565123
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: alpha,alpha'-Trehalose6-phosphate
type: Species

572492
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type: LocalParameter

276026
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species: 565619
type: SpeciesReference

565337
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-O-(1-Carboxyvinyl)-3-phosphoshikimate
type: Species

573012
value: 0.0
type: LocalParameter

573883
value: 0.0
type: LocalParameter

570855
value: 0.0
type: LocalParameter

250738
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species: 565313
type: SpeciesReference

292253
stoichiometry: 1.0
species: 564369
type: SpeciesReference

570854
value: 1000.0
type: LocalParameter

258347
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species: 564547
type: SpeciesReference

568369
value: 1000.0
type: LocalParameter

568948
value: 0.0
type: LocalParameter

565126
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
type: Species

566608
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Guanine[p]
type: Species

277973
stoichiometry: 1.0
species: 564345
type: SpeciesReference

566609
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Guanine[e]
type: Species

568949
value: 0.0
type: LocalParameter

317411
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species: 564535
type: SpeciesReference

268384
stoichiometry: 1.0
species: 565238
type: SpeciesReference

275097
stoichiometry: 1.0
species: 564405
type: SpeciesReference

572490
value: 0.0
type: LocalParameter

573684
value: 1000.0
type: LocalParameter

573881
value: 1000.0
type: LocalParameter

574766
value: 1000.0
type: LocalParameter

565658
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-(2-Hydroxyethyl)-4-methylthiazole
type: Species

565880
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: ProteinN6-(octanoyl)lysine
type: Species

261086
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species: 565930
type: SpeciesReference

570857
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type: LocalParameter

263926
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species: 564348
type: SpeciesReference

243149
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species: 565568
type: SpeciesReference

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species: 564345
type: SpeciesReference

287968
stoichiometry: 1.0
species: 564366
type: SpeciesReference

573689
value: 1000.0
type: LocalParameter

570705
value: 1000.0
type: LocalParameter

566606
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Thymine[e]
type: Species

574761
value: 1000.0
type: LocalParameter

570858
value: -1000.0
type: LocalParameter

564898
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Citrulline
type: Species

573880
value: -1000.0
type: LocalParameter

572495
value: 0.0
type: LocalParameter

570999
value: 0.0
type: LocalParameter

573015
value: -1000.0
type: LocalParameter

565039
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Mannonate
type: Species

312288
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species: 564829
type: SpeciesReference

266888
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species: 564562
type: SpeciesReference

568943
value: 1000.0
type: LocalParameter

236790
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species: 564466
type: SpeciesReference

570131
value: 0.0
type: LocalParameter

570859
value: 1000.0
type: LocalParameter

570706
value: 0.0
type: LocalParameter

282763
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species: 566234
type: SpeciesReference

565652
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-3-Hydroxydodecanoyl-CoA
type: Species

240515
stoichiometry: 2.0
species: 564535
type: SpeciesReference

569160
value: 0.0
type: LocalParameter

573016
value: 1000.0
type: LocalParameter

568944
value: 0.0
type: LocalParameter

303658
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species: 565355
type: SpeciesReference

566604
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Thymine[p]
type: Species

573687
value: 0.0
type: LocalParameter

575139
value: -1000.0
type: LocalParameter

244682
stoichiometry: 1.0
species: 564517
type: SpeciesReference

569161
value: 0.0
type: LocalParameter

565655
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-3-Hydroxytetradecanoyl-CoA
type: Species

268902
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species: 565295
type: SpeciesReference

568945
value: 0.0
type: LocalParameter

265099
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species: 564348
type: SpeciesReference

251756
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species: 564372
type: SpeciesReference

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species: 566666
type: SpeciesReference

258118
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species: 564520
type: SpeciesReference

565129
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Amylose
type: Species

573688
value: -1000.0
type: LocalParameter

574762
value: 0.0
type: LocalParameter

566605
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Thymine[e]
type: Species

570708
value: 0.0
type: LocalParameter

575138
value: 0.0
type: LocalParameter

573014
value: 0.0
type: LocalParameter

314497
stoichiometry: 1.0
species: 566803
type: SpeciesReference

570133
value: -1000.0
type: LocalParameter

572494
value: 1000.0
type: LocalParameter

569162
value: 1000.0
type: LocalParameter

252240
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species: 565496
type: SpeciesReference

311694
stoichiometry: 1.0
species: 564862
type: SpeciesReference

568946
value: -1000.0
type: LocalParameter

255129
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species: 564565
type: SpeciesReference

285513
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species: 565120
type: SpeciesReference

298042
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species: 565511
type: SpeciesReference

569007
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type: LocalParameter

293361
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species: 566146
type: SpeciesReference

574546
value: 1000.0
type: LocalParameter

569152
value: 0.0
type: LocalParameter

570135
value: 0.0
type: LocalParameter

568361
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type: Reaction
fast: false
reversible: false
reactant: 318449
name: putative sarcosine oxidase
kinetic law: 318497
product: 318473
notes: GPR_ASSOCIATION: (RSP_2689 and RSP_2688 and RSP_2690 and RSP_2686) or (RSP_2689 and RSP_2688 and RSP_2690 and RSP_0638) GENE_LIST: RSP_2689; RSP_2688; RSP_2690; RSP_2686; RSP_2689; RSP_2688; RSP_2690; RSP_0638; SUBSYSTEM: Glycine, serine and threonine metabolism Equation: 5,10-Methylenetetrahydrofolate + 3-Methyl-2-oxobutanoic acid + H2O <=> Tetrahydrofolate + 2-Dehydropantoate Confidence Level: 2
product: 318485
reactant: 318437

565769
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-
type: Species

573230
value: 0.0
type: LocalParameter

573468
value: -1000.0
type: LocalParameter

263854
stoichiometry: 2.0
species: 564345
type: SpeciesReference

575148
value: 0.0
type: LocalParameter

565874
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxooctanoyl-CoA
type: Species

568951
value: 1000.0
type: LocalParameter

283821
stoichiometry: 1.0
species: 564402
type: SpeciesReference

572909
value: 0.0
type: LocalParameter

569006
value: 0.0
type: LocalParameter

270367
stoichiometry: 4.0
species: 564535
type: SpeciesReference

255951
stoichiometry: 1.0
species: 565111
type: SpeciesReference

570134
value: 1000.0
type: LocalParameter

282122
stoichiometry: 1.0
species: 564499
type: SpeciesReference

273113
stoichiometry: 1.0
species: 564535
type: SpeciesReference

568362
notes: GPR_ASSOCIATION: RSP_0957 GENE_LIST: RSP_0957; SUBSYSTEM: Pyrimidine metabolism Equation: (S)-Dihydroorotate + NAD+ <=> Orotate + H+ + NADH Confidence Level: 2
type: Reaction
reversible: true
product: 318533
product: 318545
reactant: 318509
fast: false
name: dihydroorotate dehydrogenase 2
reactant: 318521
product: 318557
kinetic law: 318569

569151
value: 0.0
type: LocalParameter

566828
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Selenide[p]
type: Species

575149
value: 0.0
type: LocalParameter

281276
stoichiometry: 1.0
species: 564481
type: SpeciesReference

573467
value: 0.0
type: LocalParameter

565661
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-(5-Phospho-D-ribosyl)anthranilate
type: Species

250958
stoichiometry: 1.0
species: 564345
type: SpeciesReference

570860
value: 0.0
type: LocalParameter

568954
value: 0.0
type: LocalParameter

299312
stoichiometry: 1.0
species: 564351
type: SpeciesReference

255444
stoichiometry: 1.0
species: 564697
type: SpeciesReference

572908
value: 0.0
type: LocalParameter

265232
stoichiometry: 1.0
species: 565289
type: SpeciesReference

569009
value: 1000.0
type: LocalParameter

574548
value: 0.0
type: LocalParameter

293578
stoichiometry: 1.0
species: 566171
type: SpeciesReference

570137
value: 0.0
type: LocalParameter

568363
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reactant: 318593
notes: GPR_ASSOCIATION: RSP_1508 GENE_LIST: RSP_1508; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Protoporphyrinogen IX + FAD <=> Protoporphyrin + FADH2 + 4H+ Confidence Level: 1
product: 318630
reactant: 318581
product: 318617
kinetic law: 318642
type: Reaction
product: 318605
reversible: true

569154
value: 1000.0
type: LocalParameter

565876
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: EnzymeN6-(lipoyl)lysine
type: Species

575146
value: 1000.0
type: LocalParameter

565343
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine
type: Species

315719
stoichiometry: 1.0
species: 566814
type: SpeciesReference

276743
stoichiometry: 1.0
species: 564676
type: SpeciesReference

566827
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 4-Coumarate[e]
type: Species

263709
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species: 565946
type: SpeciesReference

256725
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species: 564586
type: SpeciesReference

243041
stoichiometry: 1.0
species: 564387
type: SpeciesReference

568953
value: 0.0
type: LocalParameter

307111
stoichiometry: 1.0
species: 564535
type: SpeciesReference

569008
value: 0.0
type: LocalParameter

568364
name: Sulfite via proton symport
kinetic law: 318702
fast: false
product: 318678
reactant: 318666
type: Reaction
reactant: 318654
product: 318690
reversible: false
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Sulfite[p] + H+[p] <=> Sulfite + H+ Confidence Level: 1

274093
stoichiometry: 1.0
species: 564369
type: SpeciesReference

264698
stoichiometry: 0.5
species: 564363
type: SpeciesReference

574549
value: 0.0
type: LocalParameter

570136
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type: LocalParameter

565877
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: EnzymeN6-(dihydrolipoyl)lysine
type: Species

569153
value: 0.0
type: LocalParameter

272711
stoichiometry: 1.0
species: 564348
type: SpeciesReference

573465
value: 0.0
type: LocalParameter

566826
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 4-Coumarate[e]
type: Species

568365
kinetic law: 318740
product: 318728
reactant: 318715
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Sulfite[e] <=> Confidence Level:
fast: false
reversible: false
name: Sulfite exchange
type: Reaction

569003
value: 0.0
type: LocalParameter

569156
value: 0.0
type: LocalParameter

260570
stoichiometry: 1.0
species: 565730
type: SpeciesReference

570862
value: 0.0
type: LocalParameter

279828
stoichiometry: 1.0
species: 564844
type: SpeciesReference

573020
value: -1000.0
type: LocalParameter

566712
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glycolate[e]
type: Species

574542
value: 0.0
type: LocalParameter

573887
value: 1000.0
type: LocalParameter

575144
value: 0.0
type: LocalParameter

574768
value: 0.0
type: LocalParameter

298923
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species: 564357
type: SpeciesReference

573234
value: 0.0
type: LocalParameter

297982
stoichiometry: 1.0
species: 566223
type: SpeciesReference

288320
stoichiometry: 1.0
species: 564345
type: SpeciesReference

570139
value: 0.0
type: LocalParameter

568366
kinetic law: 318777
product: 318765
reactant: 318752
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Sulfite[e] <=> Sulfite[p] Confidence Level: 2
fast: false
reversible: true
name: Sulfite transport via diffusion
type: Reaction

569002
value: 0.0
type: LocalParameter

573233
value: 1000.0
type: LocalParameter

573888
value: 0.0
type: LocalParameter

566824
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 4-Coumarate[p]
type: Species

566711
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Glycolate[p]
type: Species

565871
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: S-(Hydroxymethyl)glutathione
type: Species

289815
stoichiometry: 1.0
species: 564345
type: SpeciesReference

575145
value: 0.0
type: LocalParameter

569155
value: 0.0
type: LocalParameter

574769
value: 0.0
type: LocalParameter

565346
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose5-phosphate
type: Species

570138
value: 1000.0
type: LocalParameter

569158
value: 1000.0
type: LocalParameter

569005
value: 1000.0
type: LocalParameter

245212
stoichiometry: 1.0
species: 564448
type: SpeciesReference

568367
value: -1000.0
type: LocalParameter

311476
stoichiometry: 1.0
species: 564354
type: SpeciesReference

568950
value: 0.0
type: LocalParameter

570864
value: 1000.0
type: LocalParameter

566823
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: meso-Tartaricacid[e]
type: Species

286382
stoichiometry: 1.0
species: 564448
type: SpeciesReference

573885
value: -1000.0
type: LocalParameter

298658
stoichiometry: 1.0
species: 564535
type: SpeciesReference

575142
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type: LocalParameter

282859
stoichiometry: 1.0
species: 564730
type: SpeciesReference

566710
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Ribitol[e]
type: Species

574544
value: 0.0
type: LocalParameter

267986
stoichiometry: 1.0
species: 564348
type: SpeciesReference

569157
value: 0.0
type: LocalParameter

569004
value: 0.0
type: LocalParameter

570863
value: -1000.0
type: LocalParameter

258601
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species: 564520
type: SpeciesReference

304453
stoichiometry: 1.0
species: 566254
type: SpeciesReference

255346
stoichiometry: 1.0
species: 564393
type: SpeciesReference

316313
stoichiometry: 0.00299
species: 564589
type: SpeciesReference

565873
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxodecanoyl-CoA
type: Species

566822
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boundary condition: false
has only substance units: false
initial concentration: NaN
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in compartment: 564338
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initial amount: NaN
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initial concentration: NaN
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name: meso-Tartaricacid[p]
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initial concentration: NaN
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name: 2-Oxoglutarate[p]
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initial concentration: NaN
initial amount: NaN
in compartment: 564339
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type: Species

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initial concentration: NaN
initial amount: NaN
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name: Glycolate[e]
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initial concentration: NaN
initial amount: NaN
in compartment: 564339
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initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-2,3-Dihydrodipicolinate
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Dehydropantoate
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type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: (S)-Lactate
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: [Dihydrolipoyllysine-residue(2-methylpropanoyl)transferase]
type: Species

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type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Methionyl-tRNA
type: Species

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species: 564535
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species: 564622
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species: 565778
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type: LocalParameter

565553
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Aminoimidazoleribotide
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Threonine
type: Species

570028
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type: LocalParameter

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type: LocalParameter

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species: 564369
type: SpeciesReference

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type: LocalParameter

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species: 565640
type: SpeciesReference

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species: 564405
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type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 4-Hydroxy-2-oxoglutarate[p]
type: Species

246055
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species: 566150
type: SpeciesReference

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species: 566264
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species: 565108
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species: 566466
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species: 566680
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2-Oxoglutarate[e]
type: Species

573384
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type: LocalParameter

568473
value: 1000.0
type: LocalParameter

568360
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reactant: 318413
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Demand reactions Equation: Glycogen <=> Confidence Level: 0
fast: false
reversible: false
name: Demand reaction for Glycogen
type: Reaction

570027
value: 0.0
type: LocalParameter

565340
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Amino-5-hydroxymethyl-2-methylpyrimidine
type: Species

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species: 564345
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573461
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type: LocalParameter

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type: LocalParameter

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type: LocalParameter

255552
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species: 564565
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species: 564369
type: SpeciesReference

573170
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type: LocalParameter

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species: 566255
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type: LocalParameter

567806
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product: 284972
reactant: 284960
reactant: 284948
notes: GPR_ASSOCIATION: RSP_1370 GENE_LIST: RSP_1370; SUBSYSTEM: Starch and sucrose metabolism Equation: Maltose + H2O <=> 2 D-Glucose Confidence Level: 2
fast: false
reversible: true
name: alpha amylase domain-containing protein
type: Reaction

573115
value: 0.0
type: LocalParameter

564889
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Xylulose
type: Species

569198
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type: LocalParameter

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type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Carbamoyl-L-aspartate
type: Species

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type: LocalParameter

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species: 565439
type: SpeciesReference

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species: 564351
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species: 564562
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567807
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reactant: 284996
notes: GPR_ASSOCIATION: RSP_1370 GENE_LIST: RSP_1370; SUBSYSTEM: Starch and sucrose metabolism Equation: Sucrose + H2O <=> D-Fructose + D-Glucose Confidence Level: 2
type: Reaction
product: 285020
reactant: 285008
fast: false
kinetic law: 285044
product: 285032

568933
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type: LocalParameter

256773
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species: 564463
type: SpeciesReference

567808
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product: 285080
reactant: 285068
reactant: 285056
notes: GPR_ASSOCIATION: RSP_2874 GENE_LIST: RSP_2874; SUBSYSTEM: Starch and sucrose metabolism Equation: Cellobiose + H2O <=> 2 D-Glucose Confidence Level: 2
fast: false
reversible: true
name: putative beta-glucosidase A
type: Reaction

569197
value: -1000.0
type: LocalParameter

574799
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type: LocalParameter

573890
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type: LocalParameter

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species: 564351
type: SpeciesReference

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Acetyl-L-glutamate5-phosphate
type: Species

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species: 564345
type: SpeciesReference

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species: 564360
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species: 565373
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species: 564366
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species: 564511
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species: 566528
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species: 564369
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species: 565514
type: SpeciesReference

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species: 565991
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species: 564535
type: SpeciesReference

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type: LocalParameter

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species: 565784
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type: LocalParameter

573004
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type: LocalParameter

567809
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product: 285152
product: 285128
reactant: 285104
kinetic law: 285164
type: Reaction
name: OtsA trehalose-6-phosphate synthase
reactant: 285116
product: 285140
fast: false
reversible: true

565640
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initial concentration: NaN
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in compartment: 564339
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type: Species

292999
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species: 564366
type: SpeciesReference

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type: LocalParameter

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type: LocalParameter

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species: 564369
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species: 565918
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type: LocalParameter

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type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Ribulose
type: Species

573116
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type: LocalParameter

573003
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type: LocalParameter

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species: 566826
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species: 564535
type: SpeciesReference

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initial concentration: NaN
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name: N-Acetylornithine
type: Species

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species: 564366
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type: LocalParameter

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type: LocalParameter

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species: 565568
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type: LocalParameter

567802
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reactant: 284645
fast: false
notes: GPR_ASSOCIATION: RSP_2304 GENE_LIST: RSP_2304; SUBSYSTEM: Riboflavin metabolism Equation: ATP + Riboflavin <=> ADP + FMN + H+ Confidence Level: 2
reversible: true
name: FMN adenylyltransferase / riboflavin kinase
reactant: 284657
kinetic law: 284705
product: 284681
product: 284693
type: Reaction

306967
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species: 564535
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species: 564460
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species: 564424
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type: LocalParameter

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species: 566731
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species: 564637
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species: 564348
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species: 564559
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type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-Hydroxydecanoyl-CoA
type: Species

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type: LocalParameter

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kinetic law: 284778
reversible: true
name: FMN adenylyltransferase / riboflavin kinase
reactant: 284729
product: 284766
notes: GPR_ASSOCIATION: RSP_2304 GENE_LIST: RSP_2304; SUBSYSTEM: Riboflavin metabolism Equation: ATP + FMN + 2 H+ <=> Diphosphate + FAD Confidence Level: 2
fast: false
type: Reaction
product: 284754
reactant: 284717

568937
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type: LocalParameter

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species: 564399
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species: 564363
type: SpeciesReference

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species: 565772
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initial concentration: NaN
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in compartment: 564338
name: Glutathionedisulfide[e]
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species: 566828
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species: 566248
type: SpeciesReference

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type: LocalParameter

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type: LocalParameter

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species: 564913
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type: LocalParameter

567804
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kinetic law: 284851
notes: GPR_ASSOCIATION: RSP_2428 GENE_LIST: RSP_2428; SUBSYSTEM: Riboflavin metabolism Equation: Nicotinate D-ribonucleotide + Dimethylbenzimidazole <=> Nicotinate + N1-(5-Phospho-alpha-D-ribosyl)-5,6-dimethylbenzimidazole + H+ Confidence Level: 2
product: 284838
reversible: true
reactant: 284790
name: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
fast: false
type: Reaction
product: 284814
reactant: 284802

307340
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species: 566702
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species: 564535
type: SpeciesReference

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species: 564535
type: SpeciesReference

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species: 565922
type: SpeciesReference

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type: LocalParameter

565349
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has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2,5-Diamino-6-(5'-phosphoribosylamino)-4-pyrimidineone
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species: 564372
type: SpeciesReference

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type: LocalParameter

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type: LocalParameter

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species: 564351
type: SpeciesReference

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type: LocalParameter

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type: LocalParameter

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species: 564345
type: SpeciesReference

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notes: GPR_ASSOCIATION: RSP_0431 GENE_LIST: RSP_0431; SUBSYSTEM: Selenoamino acid metabolism Equation: L-Selenocysteine + H+ + Reduced ferredoxin <=> Selenide + L-Alanine + Oxidized ferredoxin Confidence Level: 2
name: putative selenocysteine lyase
type: Reaction
reactant: 284876
product: 284900
product: 284912
reactant: 284864
reactant: 284888
product: 284924
reversible: true
fast: false

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species: 564348
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species: 566170
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type: LocalParameter

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species: 565637
type: SpeciesReference

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species: 566844
type: SpeciesReference

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type: LocalParameter

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species: 564535
type: SpeciesReference

570258
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575001
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type: LocalParameter

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type: LocalParameter

570032
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type: LocalParameter

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type: LocalParameter

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type: LocalParameter

570185
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type: LocalParameter

568444
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type: LocalParameter

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type: LocalParameter

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species: 564366
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species: 564535
type: SpeciesReference

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type: LocalParameter

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type: LocalParameter

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type: LocalParameter

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type: LocalParameter

573546
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type: LocalParameter

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species: 565924
type: SpeciesReference

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type: LocalParameter

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type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Uridine
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Triphosphate
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Pyruvate[p]
type: Species

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species: 564916
type: SpeciesReference

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species: 564348
type: SpeciesReference

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type: LocalParameter

575003
value: 1000.0
type: LocalParameter

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type: LocalParameter

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type: LocalParameter

570256
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type: LocalParameter

258371
stoichiometry: 1.0
species: 564937
type: SpeciesReference

247044
stoichiometry: 1.0
species: 566088
type: SpeciesReference

572921
value: -1000.0
type: LocalParameter

570183
value: 0.0
type: LocalParameter

570030
value: 1000.0
type: LocalParameter

573549
value: 0.0
type: LocalParameter

565042
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-Pantoate
type: Species

277336
stoichiometry: 1.0
species: 564369
type: SpeciesReference

259748
stoichiometry: 1.0
species: 564411
type: SpeciesReference

568442
value: 0.0
type: LocalParameter

567800
product: 284536
reactant: 284524
product: 284548
name: 6,7-dimethyl-8-ribityllumazine synthase
fast: false
reversible: false
product: 284560
kinetic law: 284585
product: 284572
notes: GPR_ASSOCIATION: RSP_0756 GENE_LIST: RSP_0756; SUBSYSTEM: Riboflavin metabolism Equation: 5-Amino-6-(1-D-ribitylamino)uracil + 3,4-Dihydroxy-2-butanone 4-phosphate <=> 6,7-Dimethyl-8-(1-D-ribityl)lumazine + orthophosphate + H+ Confidence Level: 2
type: Reaction
reactant: 284512

569296
value: 0.0
type: LocalParameter

566880
reversible: true
kinetic law: 236316
name: bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
reactant: 236242
fast: false
product: 236279
reactant: 236254
product: 236292
notes: GPR_ASSOCIATION: RSP_2166 GENE_LIST: RSP_2166; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-1-Pyrroline-5-carboxylate + NADP+ + 2 H2O <=> L-Glutamate + NADPH + H+ Confidence Level: 3
type: Reaction
product: 236304
reactant: 236267

569082
value: 1000.0
type: LocalParameter

297187
stoichiometry: 1.0
species: 566469
type: SpeciesReference

565649
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans-Dec-2-enoyl-[acp]
type: Species

250025
stoichiometry: 1.0
species: 564360
type: SpeciesReference

572920
value: 0.0
type: LocalParameter

573548
value: 0.0
type: LocalParameter

570182
value: 1000.0
type: LocalParameter

575218
value: 1000.0
type: LocalParameter

293481
stoichiometry: 1.0
species: 566156
type: SpeciesReference

567801
kinetic law: 284633
product: 284621
product: 284609
reactant: 284597
notes: GPR_ASSOCIATION: RSP_0758 GENE_LIST: RSP_0758; SUBSYSTEM: Riboflavin metabolism Equation: 2 6,7-Dimethyl-8-(1-D-ribityl)lumazine <=> Riboflavin + 5-Amino-6-(1-D-ribitylamino)uracil Confidence Level: 2
fast: false
reversible: false
name: riboflavin synthase
type: Reaction

304188
stoichiometry: 1.0
species: 566254
type: SpeciesReference

568443
value: 0.0
type: LocalParameter

568939
value: 1000.0
type: LocalParameter

574794
value: 1000.0
type: LocalParameter

570181
value: 0.0
type: LocalParameter

291467
stoichiometry: 1.0
species: 564369
type: SpeciesReference

298779
stoichiometry: 1.0
species: 565991
type: SpeciesReference

573111
value: 0.0
type: LocalParameter

575211
value: 0.0
type: LocalParameter

566883
reactant: 236461
product: 236473
reversible: true
fast: false
reactant: 236449
name: aspartate aminotransferase
kinetic law: 236499
notes: GPR_ASSOCIATION: RSP_0763 or RSP_3439 or RSP_2980 or RSP_3437 or RSP_1984 or RSP_2284 or RSP_0886 GENE_LIST: RSP_0763; RSP_3439; RSP_2980; RSP_3437; RSP_1984; RSP_2284; RSP_0886; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-Phenylalanine + 2-Oxoglutarate <=> Phenylpyruvate + L-Glutamate Confidence Level: 2
product: 236486
type: Reaction

570036
value: 0.0
type: LocalParameter

569089
value: 0.0
type: LocalParameter

315888
stoichiometry: 0.550247685656369
species: 565430
type: SpeciesReference

565202
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Pantothenate
type: Species

574689
value: 1000.0
type: LocalParameter

246972
stoichiometry: 1.0
species: 566080
type: SpeciesReference

568222
name: Hippurate via proton symport
product: 308789
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Hippurate[p] + H+[p] <=> Hippurate + H+ Confidence Level: 1
product: 308801
reversible: true
reactant: 308777
type: Reaction
reactant: 308765
kinetic law: 308813
fast: false

568448
value: -1000.0
type: LocalParameter

281893
stoichiometry: 1.0
species: 564481
type: SpeciesReference

565048
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Methylglyoxal
type: Species

572200
value: 0.0
type: LocalParameter

564670
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Methyl-2-oxobutanoicacid
type: Species

570180
value: 0.0
type: LocalParameter

574795
value: 0.0
type: LocalParameter

273936
stoichiometry: 1.0
species: 564363
type: SpeciesReference

277553
stoichiometry: 1.0
species: 564369
type: SpeciesReference

569088
value: 0.0
type: LocalParameter

575212
value: 1000.0
type: LocalParameter

573005
value: 1000.0
type: LocalParameter

570035
value: 1000.0
type: LocalParameter

564997
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Formimino-L-glutamate
type: Species

566882
notes: GPR_ASSOCIATION: RSP_1874 and RSP_0818 GENE_LIST: RSP_1874; RSP_0818; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: 2 ATP + L-Glutamine + HCO3- + H2O <=> 2 ADP + Orthophosphate + L-Glutamate + Carbamoyl phosphate Confidence Level: 2
name: carbamoyl phosphate synthase
product: 236425
reactant: 236340
fast: false
product: 236401
product: 236389
reactant: 236353
reversible: false
product: 236377
product: 236413
reactant: 236365
kinetic law: 236437
type: Reaction
reactant: 236328

267841
stoichiometry: 1.0
species: 565715
type: SpeciesReference

568223
kinetic law: 308849
product: 308837
reactant: 308825
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Hippurate[e] <=> Confidence Level:
fast: false
reversible: false
name: Hippurate exchange
type: Reaction

271044
stoichiometry: 2.0
species: 564517
type: SpeciesReference

276816
stoichiometry: 1.0
species: 564378
type: SpeciesReference

568449
value: 1000.0
type: LocalParameter

265196
stoichiometry: 1.0
species: 564348
type: SpeciesReference

236694
stoichiometry: 1.0
species: 566119
type: SpeciesReference

564883
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Magnesium
type: Species

574792
value: -1000.0
type: LocalParameter

574687
value: 0.0
type: LocalParameter

573008
value: 0.0
type: LocalParameter

573113
value: 1000.0
type: LocalParameter

569087
value: 0.0
type: LocalParameter

568220
kinetic law: 308717
product: 308705
reactant: 308692
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Cys-Gly[e] <=> Confidence Level:
fast: false
reversible: false
name: Cys-Gly exchange
type: Reaction

568446
value: 0.0
type: LocalParameter

MODEL1106220000
reaction: 568290
species: 566453
reaction: 567006
reaction: 567011
species: 564844
species: 566364
species: 565985
reaction: 567822
species: 565721
reaction: 567971
species: 565319
reaction: 568010
reaction: 567639
species: 564763
reaction: 567766
species: 565763
species: 566234
compartment: 564338
reaction: 567053
species: 564625
species: 566614
species: 565346
reaction: 567081
species: 566174
species: 566525
species: 565084
reaction: 567110
reaction: 567474
species: 566722
reaction: 567801
species: 566373
species: 566371
reaction: 568091
reaction: 568169
reaction: 568259
species: 566092
reaction: 567447
species: 565664
species: 565825
species: 565856
reaction: 567715
species: 565247
reaction: 567624
reaction: 568311
species: 564550
species: 566581
species: 565355
species: 565015
species: 566270
reaction: 567895
species: 566485
species: 566302
species: 565805
reaction: 568083
reaction: 567093
reaction: 567518
reaction: 568028
reaction: 567591
reaction: 566896
species: 565748
reaction: 568298
reaction: 568356
reaction: 567000
species: 565622
species: 566378
reaction: 567169
species: 565196
species: 564348
species: 566646
species: 566295
reaction: 567994
reaction: 567844
reaction: 566974
species: 565706
species: 564643
reaction: 568219
reaction: 567782
species: 565364
reaction: 567811
species: 566192

260510
stoichiometry: 1.0
species: 565883
type: SpeciesReference

270293
stoichiometry: 1.0
species: 564535
type: SpeciesReference

573112
value: -1000.0
type: LocalParameter

292843
stoichiometry: 1.0
species: 566255
type: SpeciesReference

575214
value: 0.0
type: LocalParameter

572202
value: 0.0
type: LocalParameter

305216
stoichiometry: 1.0
species: 565924
type: SpeciesReference

289936
stoichiometry: 1.0
species: 564366
type: SpeciesReference

573007
value: 0.0
type: LocalParameter

574688
value: -1000.0
type: LocalParameter

570033
value: -1000.0
type: LocalParameter

570259
value: -1000.0
type: LocalParameter

569086
value: 1000.0
type: LocalParameter

566884
product: 236535
notes: GPR_ASSOCIATION: RSP_0763 or RSP_3439 or RSP_2980 or RSP_3437 or RSP_1984 or RSP_2284 or RSP_0886 GENE_LIST: RSP_0763; RSP_3439; RSP_2980; RSP_3437; RSP_1984; RSP_2284; RSP_0886; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-Tyrosine + 2-Oxoglutarate <=> 3-(4-Hydroxyphenyl)pyruvate + L-Glutamate Confidence Level: 2
reactant: 236511
product: 236547
fast: false
name: aspartate aminotransferase
type: Reaction
reversible: true
kinetic law: 236559
reactant: 236523

311598
stoichiometry: 1.0
species: 564345
type: SpeciesReference

568221
kinetic law: 308753
product: 308741
reactant: 308729
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Cys-Gly[e] <=> Cys-Gly[p] Confidence Level: 2
fast: false
reversible: true
name: Cys-Gly transport via diffusion
type: Reaction

568447
value: 0.0
type: LocalParameter

242919
stoichiometry: 1.0
species: 564387
type: SpeciesReference

252168
stoichiometry: 1.0
species: 564345
type: SpeciesReference

317097
stoichiometry: 1.0
species: 564345
type: SpeciesReference

305361
stoichiometry: 1.0
species: 564535
type: SpeciesReference

259301
stoichiometry: 1.0
species: 564354
type: SpeciesReference

263806
stoichiometry: 1.0
species: 564369
type: SpeciesReference

302814
stoichiometry: 1.0
species: 566572
type: SpeciesReference

255540
stoichiometry: 1.0
species: 564856
type: SpeciesReference

303778
stoichiometry: 1.0
species: 564679
type: SpeciesReference

572915
value: 0.0
type: LocalParameter

568227
kinetic law: 309017
product: 309005
reactant: 308993
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Chitobiose[e] <=> Chitobiose[p] Confidence Level: 2
fast: false
reversible: true
name: Chitobiose transport via diffusion
type: Reaction

565352
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: FADH2
type: Species

566874
product: 235891
product: 235879
name: aspartate kinase
notes: GPR_ASSOCIATION: RSP_1849 GENE_LIST: RSP_1849; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: ATP + L-Aspartate <=> ADP + 4-Phospho-L-aspartate Confidence Level: 4
fast: false
reversible: true
type: Reaction
reactant: 235855
reactant: 235867
kinetic law: 235903

566280
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (S)-Malate[e]
type: Species

274069
stoichiometry: 1.0
species: 565945
type: SpeciesReference

572204
value: 1000.0
type: LocalParameter

566729
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Deoxyribose[e]
type: Species

267554
stoichiometry: 1.0
species: 564961
type: SpeciesReference

287847
stoichiometry: 1.0
species: 564345
type: SpeciesReference

568226
kinetic law: 308981
product: 308969
reactant: 308957
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Chitobiose[e] <=> Confidence Level:
fast: false
reversible: false
name: Chitobiose exchange
type: Reaction

572916
value: -1000.0
type: LocalParameter

566875
reversible: false
name: L-glutamine synthetase
product: 235951
type: Reaction
kinetic law: 235999
reactant: 235939
notes: GPR_ASSOCIATION: RSP_0147 or RSP_2319 or RSP_0375 or RSP_0377 or RSP_1568 GENE_LIST: RSP_0147; RSP_2319; RSP_0375; RSP_0377; RSP_1568; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: ATP + L-Glutamate + NH3 <=> ADP + Orthophosphate + L-Glutamine + H+ Confidence Level: 3
reactant: 235927
reactant: 235915
product: 235963
fast: false
product: 235987
product: 235975

572203
value: -1000.0
type: LocalParameter

240092
stoichiometry: 1.0
species: 564378
type: SpeciesReference

572917
value: 1000.0
type: LocalParameter

294862
stoichiometry: 1.0
species: 566250
type: SpeciesReference

568225
reactant: 308897
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Chitobiose[p] + H+[p] <=> Chitobiose + H+ Confidence Level: 1
reversible: true
product: 308921
product: 308933
reactant: 308909
kinetic law: 308945
type: Reaction
name: Chitobiose via proton symport
fast: false

310738
stoichiometry: 0.0725562791901838
species: 565376
type: SpeciesReference

273210
stoichiometry: 3.0
species: 564363
type: SpeciesReference

575222
value: 0.0
type: LocalParameter

569078
value: 1000.0
type: LocalParameter

282955
stoichiometry: 1.0
species: 564348
type: SpeciesReference

297994
stoichiometry: 1.0
species: 564354
type: SpeciesReference

570037
value: 0.0
type: LocalParameter

566282
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (S)-Malate[e]
type: Species

566876
fast: false
product: 236048
notes: GPR_ASSOCIATION: RSP_0763 or RSP_3439 GENE_LIST: RSP_0763; RSP_3439; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-Aspartate + 2-Oxoglutarate <=> Oxaloacetate + L-Glutamate Confidence Level: 3
reversible: true
name: aspartate aminotransferase
product: 236036
kinetic law: 236060
type: Reaction
reactant: 236024
reactant: 236012

572206
value: 0.0
type: LocalParameter

299929
stoichiometry: 1.0
species: 566506
type: SpeciesReference

277118
stoichiometry: 1.0
species: 566235
type: SpeciesReference

256180
stoichiometry: 1.0
species: 564535
type: SpeciesReference

238110
stoichiometry: 1.0
species: 565700
type: SpeciesReference

568224
kinetic law: 308885
product: 308873
reactant: 308861
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Hippurate[e] <=> Hippurate[p] Confidence Level: 2
fast: false
reversible: true
name: Hippurate transport via diffusion
type: Reaction

569079
value: 0.0
type: LocalParameter

316116
stoichiometry: 0.077027
species: 564928
type: SpeciesReference

573541
value: 1000.0
type: LocalParameter

575221
value: 0.0
type: LocalParameter

290606
stoichiometry: 1.0
species: 564366
type: SpeciesReference

570038
value: -1000.0
type: LocalParameter

238741
stoichiometry: 1.0
species: 564366
type: SpeciesReference

276062
stoichiometry: 1.0
species: 564535
type: SpeciesReference

566283
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Fumarate[p]
type: Species

251611
stoichiometry: 1.0
species: 566352
type: SpeciesReference

564532
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Phenylalanine
type: Species

291247
stoichiometry: 1.0
species: 564366
type: SpeciesReference

566170
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine[p]
type: Species

564661
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Putrescine
type: Species

568441
value: 1000.0
type: LocalParameter

255249
stoichiometry: 1.0
species: 565111
type: SpeciesReference

572209
value: 1000.0
type: LocalParameter

315455
stoichiometry: 1.0
species: 566840
type: SpeciesReference

566725
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Altronate[e]
type: Species

573542
value: 0.0
type: LocalParameter

292627
stoichiometry: 1.0
species: 564535
type: SpeciesReference

566878
fast: false
reactant: 236084
reversible: true
product: 236109
reactant: 236072
name: glutamate synthase (NADPH)
product: 236133
kinetic law: 236145
notes: GPR_ASSOCIATION: (RSP_1146 and RSP_1149) or (RSP_1146 and RSP_0189) GENE_LIST: RSP_1146; RSP_1149; RSP_1146; RSP_0189; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: 2 L-Glutamate + NADP+ <=> L-Glutamine + 2-Oxoglutarate + NADPH + H+ Confidence Level: 3
type: Reaction
product: 236121
product: 236096

566284
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Fumarate[e]
type: Species

276960
stoichiometry: 1.0
species: 564874
type: SpeciesReference

281712
stoichiometry: 1.0
species: 564363
type: SpeciesReference

570253
value: 0.0
type: LocalParameter

248286
stoichiometry: 1.0
species: 564535
type: SpeciesReference

572910
value: -1000.0
type: LocalParameter

572912
value: 1000.0
type: LocalParameter

316239
stoichiometry: 3.0E-6
species: 564559
type: SpeciesReference

297909
stoichiometry: 1.0
species: 565511
type: SpeciesReference

572208
value: -1000.0
type: LocalParameter

566879
reactant: 236182
notes: GPR_ASSOCIATION: RSP_2166 GENE_LIST: RSP_2166; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-Glutamate 5-semialdehyde + NADP+ + H2O <=> L-Glutamate + NADPH + H+ Confidence Level: 3
name: bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
reversible: true
reactant: 236169
product: 236218
fast: false
type: Reaction
product: 236206
kinetic law: 236230
reactant: 236157
product: 236194

572207
value: 0.0
type: LocalParameter

566726
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Deoxyribose[p]
type: Species

282232
stoichiometry: 1.0
species: 564850
type: SpeciesReference

568440
value: -1000.0
type: LocalParameter

570254
value: 0.0
type: LocalParameter

565799
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phytyldiphosphate
type: Species

564667
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Acetyl-D-glucosamine
type: Species

267131
stoichiometry: 1.0
species: 564763
type: SpeciesReference

572913
value: 0.0
type: LocalParameter

289719
stoichiometry: 1.0
species: 564345
type: SpeciesReference

568229
kinetic law: 309161
name: D-1-Aminopropan-2-ol O-phosphate via proton symport
fast: false
product: 309137
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: D-1-Aminopropan-2-ol O-phosphate[p] + H+[p] <=> D-1-Aminopropan-2-ol O-phosphate + H+ Confidence Level: 1
product: 309149
reactant: 309125
type: Reaction
reactant: 309113
reversible: true

254910
stoichiometry: 1.0
species: 564469
type: SpeciesReference

566286
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Fumarate[e]
type: Species

566727
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Deoxyribose[e]
type: Species

570251
value: 1000.0
type: LocalParameter

289863
stoichiometry: 1.0
species: 564369
type: SpeciesReference

564664
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Histidine
type: Species

573544
value: 0.0
type: LocalParameter

565798
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Sedoheptulose7-phosphate
type: Species

271999
stoichiometry: 2.0
species: 564399
type: SpeciesReference

568228
reversible: true
fast: false
product: 309065
type: Reaction
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: L-Glutamyl-tRNA(Glu) + NADPH + H+ <=> (S)-4-Amino-5-oxopentanoate + tRNA(Glu) + NADP+ Confidence Level: 1
reactant: 309029
product: 309077
reactant: 309041
product: 309089
kinetic law: 309101
reactant: 309053

305144
stoichiometry: 1.0
species: 566642
type: SpeciesReference

246756
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initial concentration: NaN
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initial concentration: NaN
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name: D-Altronate[e]
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initial concentration: NaN
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name: Glutathionedisulfide[p]
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name: L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine[e]
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name: L-Tyrosine
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name: Potassium
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568942
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238268
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species: 564345
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573431
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type: LocalParameter

564535
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: H
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species: 564454
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name: Glutathione[p]
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species: 566840
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573432
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569188
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304296
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species: 566255
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initial concentration: NaN
initial amount: NaN
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name: 4-Hydroxy-2-oxoglutarate[e]
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species: 564348
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species: 565141
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species: 564345
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312118
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species: 564625
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568301
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product: 314497
reactant: 314485
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 5'-Methylthioadenosine[e] <=> 5'-Methylthioadenosine[p] Confidence Level: 2
fast: false
reversible: true
name: 5'-Methylthioadenosine transport via diffusion
type: Reaction

307473
stoichiometry: 1.0
species: 565060
type: SpeciesReference

569398
value: -1000.0
type: LocalParameter

291682
stoichiometry: 1.0
species: 566168
type: SpeciesReference

303634
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species: 564535
type: SpeciesReference

568920
value: 0.0
type: LocalParameter

292987
stoichiometry: 1.0
species: 566632
type: SpeciesReference

574784
value: 0.0
type: LocalParameter

574671
value: -1000.0
type: LocalParameter

300098
stoichiometry: 1.0
species: 564348
type: SpeciesReference

569184
value: 0.0
type: LocalParameter

573105
value: 0.0
type: LocalParameter

568302
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reactant: 314522
product: 314547
fast: false
product: 314559
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Glycolaldehyde[p] + H+[p] <=> Glycolaldehyde + H+ Confidence Level: 1
name: Glycolaldehyde via proton symport
kinetic law: 314571
reactant: 314535
type: Reaction

255687
stoichiometry: 3.0
species: 564393
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295638
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species: 564360
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species: 564535
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species: 564375
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species: 564616
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species: 566716
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species: 565120
type: SpeciesReference

569183
value: 0.0
type: LocalParameter

564874
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Inosine
type: Species

569397
value: 0.0
type: LocalParameter

573104
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type: LocalParameter

252264
stoichiometry: 1.0
species: 564345
type: SpeciesReference

568922
value: -1000.0
type: LocalParameter

568303
kinetic law: 314607
product: 314595
reactant: 314583
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Glycolaldehyde[e] <=> Confidence Level:
fast: false
reversible: false
name: Glycolaldehyde exchange
type: Reaction

254431
stoichiometry: 1.0
species: 565319
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255105
stoichiometry: 1.0
species: 564613
type: SpeciesReference

574673
value: 1000.0
type: LocalParameter

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-Lactaldehyde
type: Species

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species: 564366
type: SpeciesReference

569186
value: 1000.0
type: LocalParameter

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type: LocalParameter

306737
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species: 566686
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species: 564369
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initial concentration: NaN
initial amount: NaN
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name: Orotate
type: Species

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type: LocalParameter

268926
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species: 564904
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species: 564372
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species: 564715
type: SpeciesReference

568304
kinetic law: 314643
product: 314631
reactant: 314619
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Glycolaldehyde[e] <=> Glycolaldehyde[p] Confidence Level: 2
fast: false
reversible: true
name: Glycolaldehyde transport via diffusion
type: Reaction

568921
value: 0.0
type: LocalParameter

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species: 564366
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265075
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species: 564535
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2,3-Dihydroxy-3-methylbutanoate
type: Species

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value: 0.0
type: LocalParameter

573102
value: 1000.0
type: LocalParameter

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type: LocalParameter

258251
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species: 564366
type: SpeciesReference

574787
value: 0.0
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277239
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species: 566239
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species: 564823
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species: 565724
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stoichiometry: 1.0
species: 565571
type: SpeciesReference

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value: 0.0
type: LocalParameter

573109
value: 0.0
type: LocalParameter

574788
value: 1000.0
type: LocalParameter

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value: -1000.0
type: LocalParameter

297283
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species: 565490
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570199
value: 0.0
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286021
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species: 566484
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species: 565928
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261622
stoichiometry: 1.0
species: 565691
type: SpeciesReference

569180
value: 0.0
type: LocalParameter

568923
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type: LocalParameter

257549
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species: 565132
type: SpeciesReference

245392
stoichiometry: 1.0
species: 565259
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stoichiometry: 2.0
species: 564363
type: SpeciesReference

573108
value: 1000.0
type: LocalParameter

570198
value: 0.0
type: LocalParameter

569393
value: 0.0
type: LocalParameter

238038
stoichiometry: 1.0
species: 564943
type: SpeciesReference

315152
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species: 566830
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species: 564375
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stoichiometry: 1.0
species: 564535
type: SpeciesReference

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value: 0.0
type: LocalParameter

306955
stoichiometry: 1.0
species: 566454
type: SpeciesReference

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stoichiometry: 1.0
species: 566274
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stoichiometry: 1.0
species: 564345
type: SpeciesReference

569182
value: 1000.0
type: LocalParameter

565634
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Dehydro-4-deoxy-D-glucuronate
type: Species

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value: 0.0
type: LocalParameter

264457
stoichiometry: 2.0
species: 564535
type: SpeciesReference

298997
stoichiometry: 1.0
species: 564351
type: SpeciesReference

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value: 1000.0
type: LocalParameter

292349
stoichiometry: 1.0
species: 564369
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244088
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species: 564535
type: SpeciesReference

568300
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product: 314461
reactant: 314448
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 5'-Methylthioadenosine[e] <=> Confidence Level:
fast: false
reversible: false
name: 5'-Methylthioadenosine exchange
type: Reaction

264518
stoichiometry: 4.0
species: 564640
type: SpeciesReference

568925
value: 0.0
type: LocalParameter

268360
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species: 564348
type: SpeciesReference

569395
value: 1000.0
type: LocalParameter

573106
value: -1000.0
type: LocalParameter

569181
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type: LocalParameter

573449
value: 0.0
type: LocalParameter

316551
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species: 566860
type: SpeciesReference

277997
stoichiometry: 1.0
species: 564628
type: SpeciesReference

574670
value: 0.0
type: LocalParameter

570042
value: 0.0
type: LocalParameter

575229
value: 1000.0
type: LocalParameter

565793
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Methylcytosine
type: Species

281144
stoichiometry: 1.0
species: 564535
type: SpeciesReference

569071
value: 0.0
type: LocalParameter

569285
value: -1000.0
type: LocalParameter

247032
stoichiometry: 1.0
species: 566087
type: SpeciesReference

564988
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Aminolevulinate
type: Species

272991
stoichiometry: 1.0
species: 565847
type: SpeciesReference

572934
value: 1000.0
type: LocalParameter

568928
value: 0.0
type: LocalParameter

568454
value: 0.0
type: LocalParameter

565054
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Aminobenzoate
type: Species

568309
kinetic law: 314874
product: 314862
reactant: 314850
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: meso-Tartaric acid[e] <=> Confidence Level:
fast: false
reversible: false
name: meso-Tartaric acid exchange
type: Reaction

259736
stoichiometry: 1.0
species: 565274
type: SpeciesReference

570041
value: 0.0
type: LocalParameter

570194
value: -1000.0
type: LocalParameter

575016
value: 0.0
type: LocalParameter

569070
value: 1000.0
type: LocalParameter

570267
value: 0.0
type: LocalParameter

566892
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reversible: false
type: Reaction
reactant: 236946
kinetic law: 237007
product: 236983
name: aspartate carbamoyltransferase
product: 236970
fast: false
reactant: 236958
notes: GPR_ASSOCIATION: RSP_1002 GENE_LIST: RSP_1002; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: Carbamoyl phosphate + L-Aspartate <=> Orthophosphate + N-Carbamoyl-L-aspartate Confidence Level: 2

569284
value: 0.0
type: LocalParameter

304176
stoichiometry: 1.0
species: 564835
type: SpeciesReference

565637
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: CMP-3-deoxy-D-manno-octulosonate
type: Species

250037
stoichiometry: 1.0
species: 566430
type: SpeciesReference

572932
value: -1000.0
type: LocalParameter

568927
value: 1000.0
type: LocalParameter

568455
value: 0.0
type: LocalParameter

573559
value: 0.0
type: LocalParameter

575227
value: 0.0
type: LocalParameter

570197
value: 0.0
type: LocalParameter

308608
stoichiometry: 1.0
species: 564345
type: SpeciesReference

572931
value: 0.0
type: LocalParameter

568230
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product: 309185
reactant: 309173
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: D-1-Aminopropan-2-ol O-phosphate[e] <=> Confidence Level:
fast: false
reversible: false
name: D-1-Aminopropan-2-ol O-phosphate exchange
type: Reaction

569287
value: 0.0
type: LocalParameter

566891
product: 236886
reactant: 236862
type: Reaction
product: 236922
product: 236874
reversible: true
notes: GPR_ASSOCIATION: RSP_2557 or RSP_7386 GENE_LIST: RSP_2557; RSP_7386; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: ATP + L-Aspartate + L-Glutamine + H2O <=> AMP + Diphosphate + L-Asparagine + L-Glutamate + H+ Confidence Level: 2
reactant: 236838
name: putative asparagine synthase
reactant: 236826
product: 236910
kinetic law: 236934
product: 236898
reactant: 236850
fast: false

287195
stoichiometry: 1.0
species: 565009
type: SpeciesReference

243775
stoichiometry: 1.0
species: 564399
type: SpeciesReference

575013
value: 0.0
type: LocalParameter

569073
value: 0.0
type: LocalParameter

568456
value: 0.0
type: LocalParameter

263986
stoichiometry: 1.0
species: 565945
type: SpeciesReference

570196
value: 1000.0
type: LocalParameter

570043
value: -1000.0
type: LocalParameter

565796
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Carboxy-1-hydroxypropyl-ThPP
type: Species

568231
kinetic law: 309234
product: 309222
reactant: 309210
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: D-1-Aminopropan-2-ol O-phosphate[e] <=> D-1-Aminopropan-2-ol O-phosphate[p] Confidence Level: 2
fast: false
reversible: true
name: D-1-Aminopropan-2-ol O-phosphate transport via diffusion
type: Reaction

294125
stoichiometry: 1.0
species: 566040
type: SpeciesReference

572930
value: 0.0
type: LocalParameter

570269
value: 0.0
type: LocalParameter

565211
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R,R)-Tartaricacid
type: Species

569072
value: 0.0
type: LocalParameter

575014
value: 1000.0
type: LocalParameter

569286
value: 1000.0
type: LocalParameter

566890
reactant: 236778
product: 236802
name: asparaginase
notes: GPR_ASSOCIATION: RSP_3949 GENE_LIST: RSP_3949; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-Asparagine + H2O <=> L-Aspartate + NH3 Confidence Level: 2
type: Reaction
fast: false
product: 236790
kinetic law: 236814
reactant: 236766
reversible: false

307244
stoichiometry: 1.0
species: 564345
type: SpeciesReference

568929
value: 0.0
type: LocalParameter

568457
value: 1000.0
type: LocalParameter

565057
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Betainealdehyde
type: Species

272843
stoichiometry: 1.0
species: 565844
type: SpeciesReference

570046
value: 0.0
type: LocalParameter

569075
value: 0.0
type: LocalParameter

575225
value: 0.0
type: LocalParameter

574780
value: 0.0
type: LocalParameter

573101
value: -1000.0
type: LocalParameter

570191
value: 1000.0
type: LocalParameter

564871
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: HCO3-
type: Species

244293
stoichiometry: 1.0
species: 564357
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289948
stoichiometry: 1.0
species: 564535
type: SpeciesReference

276948
stoichiometry: 1.0
species: 564345
type: SpeciesReference

270281
stoichiometry: 1.0
species: 564436
type: SpeciesReference

568232
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fast: false
type: Reaction
product: 309270
reversible: false
reactant: 309246
kinetic law: 309294
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Riboflavin metabolism Equation: 5-Amino-6-(5'-phosphoribitylamino)uracil + H2O <=> 5-Amino-6-(1-D-ribitylamino)uracil + Orthophosphate Confidence Level: 1
product: 309282

568458
value: 0.0
type: LocalParameter

568305
name: Methanethiol via proton symport
product: 314692
reversible: true
reactant: 314667
type: Reaction
kinetic law: 314704
reactant: 314655
fast: false
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Methanethiol[p] + H+[p] <=> Methanethiol + H+ Confidence Level: 1
product: 314679

569289
value: -1000.0
type: LocalParameter

575012
value: 0.0
type: LocalParameter

569074
value: 1000.0
type: LocalParameter

574676
value: 0.0
type: LocalParameter

566896
name: aminotransferase
notes: GPR_ASSOCIATION: RSP_2176 GENE_LIST: RSP_2176; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: beta-Alanine + 2-Oxoglutarate <=> 3-Oxopropanoate + L-Glutamate Confidence Level: 2
type: Reaction
reversible: true
reactant: 237191
kinetic law: 237240
product: 237228
reactant: 237203
product: 237216
fast: false

278940
stoichiometry: 1.0
species: 564396
type: SpeciesReference

570045
value: 1000.0
type: LocalParameter

292831
stoichiometry: 1.0
species: 566021
type: SpeciesReference

573100
value: 0.0
type: LocalParameter

575226
value: 0.0
type: LocalParameter

299941
stoichiometry: 1.0
species: 564345
type: SpeciesReference

565790
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5,6-Dihydrothymine
type: Species

574781
value: 0.0
type: LocalParameter

305204
stoichiometry: 1.0
species: 566644
type: SpeciesReference

570190
value: -1000.0
type: LocalParameter

252156
stoichiometry: 1.0
species: 566375
type: SpeciesReference

568306
kinetic law: 314740
product: 314728
reactant: 314716
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Methanethiol[e] <=> Confidence Level:
fast: false
reversible: false
name: Methanethiol exchange
type: Reaction

568459
value: 0.0
type: LocalParameter

568233
product: 309342
kinetic law: 309367
fast: false
reactant: 309318
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Lipopolysaccharide biosynthesis Equation: UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + H2O <=> 2,3-Bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate + UMP + 2 H+ Confidence Level: 1
reactant: 309306
reversible: false
name: UDP-2,3-diacylglucosamine hydrolase
product: 309330
product: 309355
type: Reaction

242907
stoichiometry: 1.0
species: 566330
type: SpeciesReference

569288
value: 0.0
type: LocalParameter

566895
type: Reaction
product: 237166
fast: false
product: 237142
name: bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
reactant: 237105
product: 237154
notes: GPR_ASSOCIATION: RSP_2166 GENE_LIST: RSP_2166; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-1-Pyrroline-3-hydroxy-5-carboxylate + NADP+ + 2 H2O <=> L-erythro-4-Hydroxyglutamate + NADPH + H+ Confidence Level: 2
reactant: 237130
reactant: 237117
kinetic law: 237178
reversible: true

569077
value: 0.0
type: LocalParameter

575223
value: 1000.0
type: LocalParameter

565214
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Acetolactate
type: Species

570048
value: -1000.0
type: LocalParameter

574677
value: -1000.0
type: LocalParameter

570193
value: 0.0
type: LocalParameter

568307
kinetic law: 314778
product: 314765
reactant: 314753
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Methanethiol[e] <=> Methanethiol[p] Confidence Level: 2
fast: false
reversible: true
name: Methanethiol transport via diffusion
type: Reaction

291454
stoichiometry: 1.0
species: 564535
type: SpeciesReference

568234
fast: false
reactant: 309391
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Acetamide[p] + H+[p] <=> Acetamide + H+ Confidence Level: 1
product: 309415
reactant: 309379
product: 309403
reversible: true
kinetic law: 309427
name: Acetamide via proton symport
type: Reaction

277565
stoichiometry: 1.0
species: 564958
type: SpeciesReference

566894
reactant: 237043
kinetic law: 237093
reversible: true
reactant: 237019
product: 237069
type: Reaction
product: 237081
notes: GPR_ASSOCIATION: RSP_2166 GENE_LIST: RSP_2166; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-erythro-4-Hydroxyglutamate + NADPH + 3 H+ <=> L-4-Hydroxyglutamate semialdehyde + NADP+ + H2O Confidence Level: 2
name: bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
reactant: 237031
product: 237056
fast: false

570047
value: 0.0
type: LocalParameter

569076
value: 0.0
type: LocalParameter

306302
stoichiometry: 1.0
species: 566674
type: SpeciesReference

575010
value: 0.0
type: LocalParameter

574678
value: 1000.0
type: LocalParameter

564985
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5,6-Dihydrouracil
type: Species

248129
stoichiometry: 1.0
species: 564354
type: SpeciesReference

570192
value: 0.0
type: LocalParameter

574783
value: 1000.0
type: LocalParameter

273924
stoichiometry: 1.0
species: 564357
type: SpeciesReference

287047
stoichiometry: 1.0
species: 564535
type: SpeciesReference

276828
stoichiometry: 1.0
species: 564535
type: SpeciesReference

568308
name: meso-Tartaric acid via proton symport
reactant: 314802
reversible: true
product: 314814
product: 314826
kinetic law: 314838
type: Reaction
reactant: 314790
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: meso-Tartaric acid[p] + H+[p] <=> meso-Tartaric acid + H+ Confidence Level: 1
fast: false

271056
stoichiometry: 2.0
species: 565784
type: SpeciesReference

311403
stoichiometry: 1.0
species: 566763
type: SpeciesReference

267853
stoichiometry: 1.0
species: 564354
type: SpeciesReference

568235
kinetic law: 309463
product: 309451
reactant: 309439
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Acetamide[e] <=> Confidence Level:
fast: false
reversible: false
name: Acetamide exchange
type: Reaction

290098
stoichiometry: 1.0
species: 564348
type: SpeciesReference

568237
reactant: 309535
product: 309547
reversible: true
kinetic law: 309572
reactant: 309523
product: 309559
fast: false
type: Reaction
reactant: 309511
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Purine metabolism Equation: Urate + Oxygen + H2O <=> 5-Hydroxyisourate + H2O2 Confidence Level: 1

294850
stoichiometry: 1.0
species: 566251
type: SpeciesReference

266791
stoichiometry: 1.0
species: 564604
type: SpeciesReference

240080
stoichiometry: 1.0
species: 564396
type: SpeciesReference

257610
stoichiometry: 1.0
species: 564387
type: SpeciesReference

566294
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2-Oxobutanoate[e]
type: Species

277781
stoichiometry: 1.0
species: 564775
type: SpeciesReference

565205
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Dephospho-CoA
type: Species

566888
reactant: 236694
kinetic law: 236754
reversible: true
reactant: 236718
name: aspartate aminotransferase
product: 236742
type: Reaction
notes: GPR_ASSOCIATION: RSP_0763 or RSP_3439 or RSP_2980 or RSP_3437 or RSP_1768 or RSP_3455 GENE_LIST: RSP_0763; RSP_3439; RSP_2980; RSP_3437; RSP_1768; RSP_3455; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-erythro-4-Hydroxyglutamate + 2-Oxoglutarate + H+ <=> D-4-Hydroxy-2-oxoglutarate + L-Glutamate Confidence Level: 2
reactant: 236706
product: 236730
fast: false

243992
stoichiometry: 4.0
species: 564535
type: SpeciesReference

575234
value: 1000.0
type: LocalParameter

573552
value: 1000.0
type: LocalParameter

569066
value: 1000.0
type: LocalParameter

564769
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Dehydro-3-deoxy-D-gluconate
type: Species

568236
kinetic law: 309499
product: 309487
reactant: 309475
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Acetamide[e] <=> Acetamide[p] Confidence Level: 2
fast: false
reversible: true
name: Acetamide transport via diffusion
type: Reaction

316128
stoichiometry: 0.086655
species: 564919
type: SpeciesReference

316447
stoichiometry: 5.9E-5
species: 566343
type: SpeciesReference

564520
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phosphoenolpyruvate
type: Species

251623
stoichiometry: 1.0
species: 564405
type: SpeciesReference

291235
stoichiometry: 1.0
species: 566148
type: SpeciesReference

566295
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2-Oxobutanoate[e]
type: Species

566182
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Cobamidecoenzyme[p]
type: Species

276050
stoichiometry: 1.0
species: 565676
type: SpeciesReference

573553
value: 0.0
type: LocalParameter

569067
value: 0.0
type: LocalParameter

573440
value: -1000.0
type: LocalParameter

297392
stoichiometry: 1.0
species: 564354
type: SpeciesReference

304393
stoichiometry: 1.0
species: 566616
type: SpeciesReference

575233
value: -1000.0
type: LocalParameter

565361
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Selenide
type: Species

290618
stoichiometry: 1.0
species: 564535
type: SpeciesReference

569068
value: 0.0
type: LocalParameter

572927
value: -1000.0
type: LocalParameter

568239
reactant: 309656
kinetic law: 309692
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: (R)-2-Methylmalate[p] + H+[p] <=> (R)-2-Methylmalate + H+ Confidence Level: 1
name: (R)-2-Methylmalate via proton symport
type: Reaction
fast: false
product: 309680
reversible: false
reactant: 309644
product: 309668

302826
stoichiometry: 1.0
species: 566248
type: SpeciesReference

569290
value: 1000.0
type: LocalParameter

570261
value: 1000.0
type: LocalParameter

260268
stoichiometry: 2.0
species: 564535
type: SpeciesReference

566292
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 2-Oxobutanoate[p]
type: Species

287835
stoichiometry: 1.0
species: 564348
type: SpeciesReference

565364
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hippurate
type: Species

575232
value: 0.0
type: LocalParameter

573550
value: 0.0
type: LocalParameter

566886
reactant: 236583
name: aspartate aminotransferase
product: 236607
fast: false
notes: GPR_ASSOCIATION: RSP_0763 or RSP_3439 or RSP_2980 or RSP_3437 GENE_LIST: RSP_0763; RSP_3439; RSP_2980; RSP_3437; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-Cysteine + 2-Oxoglutarate <=> Mercaptopyruvate + L-Glutamate Confidence Level: 2
product: 236595
reactant: 236571
reversible: true
type: Reaction
kinetic law: 236619

569069
value: 0.0
type: LocalParameter

568238
product: 309608
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Cysteine and methionine metabolism Equation: Betaine + L-Homocysteine <=> N,N-Dimethylglycine + L-Methionine Confidence Level: 1
kinetic law: 309632
fast: false
reactant: 309584
reversible: false
product: 309620
reactant: 309596
type: Reaction

572928
value: 1000.0
type: LocalParameter

575009
value: 1000.0
type: LocalParameter

566180
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glutathionedisulfide[e]
type: Species

566887
reactant: 236631
kinetic law: 236682
notes: GPR_ASSOCIATION: RSP_0763 or RSP_3439 or RSP_2980 or RSP_3437 GENE_LIST: RSP_0763; RSP_3439; RSP_2980; RSP_3437; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-Cysteate + 2-Oxoglutarate <=> 3-Sulfopyruvate + L-Glutamate Confidence Level: 2
product: 236669
reversible: true
product: 236657
reactant: 236644
name: aspartate aminotransferase
fast: false
type: Reaction

570262
value: 0.0
type: LocalParameter

273392
stoichiometry: 1.0
species: 564345
type: SpeciesReference

569291
value: 0.0
type: LocalParameter

566298
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2-Oxopentanoicacid[e]
type: Species

271987
stoichiometry: 1.0
species: 565825
type: SpeciesReference

569292
value: 0.0
type: LocalParameter

568451
value: 0.0
type: LocalParameter

575230
value: 0.0
type: LocalParameter

566739
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Chitobiose[e]
type: Species

570263
value: 0.0
type: LocalParameter

289875
stoichiometry: 1.0
species: 564565
type: SpeciesReference

565786
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxohexanoyl-CoA
type: Species

565051
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: meso-Tartaricacid
type: Species

250970
stoichiometry: 1.0
species: 566421
type: SpeciesReference

573556
value: -1000.0
type: LocalParameter

564652
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dATP
type: Species

305132
stoichiometry: 1.0
species: 566641
type: SpeciesReference

248952
stoichiometry: 1.0
species: 566350
type: SpeciesReference

566299
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2-Oxopentanoicacid[e]
type: Species

268204
stoichiometry: 1.0
species: 564366
type: SpeciesReference

572926
value: 0.0
type: LocalParameter

564766
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Octadecanoyl-[acyl-carrierprotein]
type: Species

569293
value: -1000.0
type: LocalParameter

291126
stoichiometry: 1.0
species: 564436
type: SpeciesReference

570264
value: 0.0
type: LocalParameter

568450
value: 0.0
type: LocalParameter

575007
value: -1000.0
type: LocalParameter

573557
value: 1000.0
type: LocalParameter

565208
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Alanyl-tRNA
type: Species

566296
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 2-Oxopentanoicacid[p]
type: Species

572923
value: 1000.0
type: LocalParameter

291380
stoichiometry: 1.0
species: 564970
type: SpeciesReference

298322
stoichiometry: 1.0
species: 564345
type: SpeciesReference

248274
stoichiometry: 1.0
species: 564354
type: SpeciesReference

252372
stoichiometry: 1.0
species: 564345
type: SpeciesReference

568453
value: 1000.0
type: LocalParameter

281700
stoichiometry: 1.0
species: 564907
type: SpeciesReference

569294
value: 1000.0
type: LocalParameter

292615
stoichiometry: 1.0
species: 564366
type: SpeciesReference

237735
stoichiometry: 2.0
species: 564535
type: SpeciesReference

575006
value: 0.0
type: LocalParameter

566737
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Hippurate[e]
type: Species

316227
stoichiometry: 3.98E-4
species: 564357
type: SpeciesReference

572309
value: 0.0
type: LocalParameter

310726
stoichiometry: 0.339612163940608
species: 565373
type: SpeciesReference

572924
value: 0.0
type: LocalParameter

568452
value: -1000.0
type: LocalParameter

570266
value: 1000.0
type: LocalParameter

569295
value: 0.0
type: LocalParameter

565787
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Chlorophylla
type: Species

564655
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Methanol
type: Species

282244
stoichiometry: 1.0
species: 564345
type: SpeciesReference

573555
value: 0.0
type: LocalParameter

566738
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Chitobiose[p]
type: Species

575005
value: 0.0
type: LocalParameter

288983
stoichiometry: 1.0
species: 564348
type: SpeciesReference

573447
value: 1000.0
type: LocalParameter

566735
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Hippurate[e]
type: Species

307690
stoichiometry: 1.0
species: 564369
type: SpeciesReference

259882
stoichiometry: 1.0
species: 564664
type: SpeciesReference

569179
value: 0.0
type: LocalParameter

312046
stoichiometry: 1.0
species: 564348
type: SpeciesReference

279804
stoichiometry: 1.0
species: 564345
type: SpeciesReference

282523
stoichiometry: 1.0
species: 564595
type: SpeciesReference

299408
stoichiometry: 1.0
species: 564387
type: SpeciesReference

295795
stoichiometry: 1.0
species: 566477
type: SpeciesReference

275699
stoichiometry: 1.0
species: 564345
type: SpeciesReference

572306
value: -1000.0
type: LocalParameter

288344
stoichiometry: 1.0
species: 564366
type: SpeciesReference

271879
stoichiometry: 1.0
species: 564345
type: SpeciesReference

236096
stoichiometry: 1.0
species: 564502
type: SpeciesReference

572307
value: 1000.0
type: LocalParameter

272543
stoichiometry: 4.0
species: 564369
type: SpeciesReference

572305
value: 0.0
type: LocalParameter

566733
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Cys-Gly[e]
type: Species

564763
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Ribulose5-phosphate
type: Species

573445
value: 0.0
type: LocalParameter

237626
stoichiometry: 1.0
species: 564427
type: SpeciesReference

564658
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Alanine
type: Species

564529
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Tryptophan
type: Species

252481
stoichiometry: 1.0
species: 564354
type: SpeciesReference

267962
stoichiometry: 1.0
species: 564535
type: SpeciesReference

314802
stoichiometry: 1.0
species: 566248
type: SpeciesReference

248844
stoichiometry: 1.0
species: 564535
type: SpeciesReference

316337
stoichiometry: 0.00697
species: 566013
type: SpeciesReference

566187
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Cu2+[p]
type: Species

285695
stoichiometry: 2.0
species: 564535
type: SpeciesReference

573446
value: -1000.0
type: LocalParameter

566734
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Hippurate[p]
type: Species

315335
stoichiometry: 1.0
species: 566248
type: SpeciesReference

282835
stoichiometry: 1.0
species: 564781
type: SpeciesReference

566188
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Cu2+[e]
type: Species

262709
stoichiometry: 1.0
species: 564348
type: SpeciesReference

569175
value: 0.0
type: LocalParameter

566731
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Cys-Gly[e]
type: Species

564523
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UTP
type: Species

290401
stoichiometry: 1.0
species: 564345
type: SpeciesReference

238256
stoichiometry: 1.0
species: 564943
type: SpeciesReference

573443
value: 0.0
type: LocalParameter

566290
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Pyruvate[e]
type: Species

572303
value: 0.0
type: LocalParameter

257767
stoichiometry: 1.0
species: 564505
type: SpeciesReference

310616
stoichiometry: 5.9E-5
species: 566343
type: SpeciesReference

569176
value: 0.0
type: LocalParameter

304284
stoichiometry: 1.0
species: 566616
type: SpeciesReference

290509
stoichiometry: 1.0
species: 564366
type: SpeciesReference

315551
stoichiometry: 1.0
species: 566842
type: SpeciesReference

572302
value: 1000.0
type: LocalParameter

566291
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Pyruvate[e]
type: Species

316735
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species: 565412
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566186
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Cu2+
type: Species

256083
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species: 564979
type: SpeciesReference

569177
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type: LocalParameter

260111
stoichiometry: 1.0
species: 565943
type: SpeciesReference

573299
value: 1000.0
type: LocalParameter

566183
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Cobamidecoenzyme[e]
type: Species

246612
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species: 566023
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565367
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Ala)
type: Species

573442
value: 1000.0
type: LocalParameter

566730
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Cys-Gly[p]
type: Species

564526
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Ornithine
type: Species

289646
stoichiometry: 1.0
species: 564366
type: SpeciesReference

250860
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species: 564345
type: SpeciesReference

564760
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Glucono-1,5-lactone
type: Species

572300
value: 0.0
type: LocalParameter

276266
stoichiometry: 2.0
species: 564535
type: SpeciesReference

566184
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Cobamidecoenzyme[e]
type: Species

568930
value: -1000.0
type: LocalParameter

569178
value: 1000.0
type: LocalParameter

573414
value: 1000.0
type: LocalParameter

570052
value: 0.0
type: LocalParameter

569485
value: 0.0
type: LocalParameter

573292
value: -1000.0
type: LocalParameter

289416
stoichiometry: 1.0
species: 564348
type: SpeciesReference

298985
stoichiometry: 1.0
species: 564982
type: SpeciesReference

286334
stoichiometry: 1.0
species: 564535
type: SpeciesReference

570165
value: 0.0
type: LocalParameter

242931
stoichiometry: 1.0
species: 566331
type: SpeciesReference

565517
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Phosphoribosylamine
type: Species

565622
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phosphatidylglycerophosphate
type: Species

272966
stoichiometry: 1.0
species: 564378
type: SpeciesReference

568311
product: 314958
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 4-Coumarate[p] + H+[p] <=> 4-Coumarate + H+ Confidence Level: 1
fast: false
type: Reaction
kinetic law: 314970
reactant: 314934
name: 4-Coumarate via proton symport
reactant: 314922
product: 314946
reversible: true

306943
stoichiometry: 1.0
species: 566248
type: SpeciesReference

566015
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Maltose
type: Species

567826
name: sulfite/nitrite reductase
product: 286274
fast: false
kinetic law: 286286
product: 286249
product: 286261
type: Reaction
reversible: true
reactant: 286225
notes: GPR_ASSOCIATION: RSP_1942 GENE_LIST: RSP_1942; SUBSYSTEM: Sulfur metabolism Equation: Hydrogen sulfide + 3 Oxidized ferredoxin + 3 H2O <=> Sulfite + 3 Reduced ferredoxin + 8 H+ Confidence Level: 2
reactant: 286213
reactant: 286237

265486
stoichiometry: 1.0
species: 566005
type: SpeciesReference

568914
value: 0.0
type: LocalParameter

566156
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Valine[p]
type: Species

303790
stoichiometry: 1.0
species: 566254
type: SpeciesReference

261742
stoichiometry: 1.0
species: 565108
type: SpeciesReference

287871
stoichiometry: 1.0
species: 564366
type: SpeciesReference

573413
value: 0.0
type: LocalParameter

569484
value: 1000.0
type: LocalParameter

570164
value: 0.0
type: LocalParameter

570051
value: 0.0
type: LocalParameter

295046
stoichiometry: 1.0
species: 566272
type: SpeciesReference

564868
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dGTP
type: Species

566014
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Fe3
type: Species

568312
kinetic law: 315006
product: 314994
reactant: 314982
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 4-Coumarate[e] <=> Confidence Level:
fast: false
reversible: false
name: 4-Coumarate exchange
type: Reaction

568913
value: 0.0
type: LocalParameter

567827
type: Reaction
product: 286334
reversible: true
product: 286310
name: hydroxymethylglutaryl-CoA lyase
fast: false
notes: GPR_ASSOCIATION: RSP_2510 GENE_LIST: RSP_2510; SUBSYSTEM: Valine, leucine and isoleucine biosynthesis Equation: (S)-3-Hydroxy-3-methylglutaryl-CoA <=> Acetyl-CoA + Acetoacetate + H+ Confidence Level: 2
product: 286322
reactant: 286298
kinetic law: 286346

278300
stoichiometry: 1.0
species: 565969
type: SpeciesReference

573291
value: 0.0
type: LocalParameter

566155
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Isoleucine[e]
type: Species

290630
stoichiometry: 1.0
species: 564369
type: SpeciesReference

570163
value: 0.0
type: LocalParameter

286057
stoichiometry: 1.0
species: 564448
type: SpeciesReference

569483
value: -1000.0
type: LocalParameter

573416
value: 0.0
type: LocalParameter

570050
value: 1000.0
type: LocalParameter

570389
value: 0.0
type: LocalParameter

267713
stoichiometry: 1.0
species: 565709
type: SpeciesReference

568912
value: 0.0
type: LocalParameter

567828
product: 286394
fast: false
type: Reaction
reactant: 286370
kinetic law: 286406
reversible: true
name: 3-ketoacid CoA transferase
reactant: 286358
notes: GPR_ASSOCIATION: RSP_1914 GENE_LIST: RSP_1914; SUBSYSTEM: Succinate metabolism Equation: Succinyl-CoA + Acetoacetate <=> Succinate + Acetoacetyl-CoA Confidence Level: 2
product: 286382

307364
stoichiometry: 1.0
species: 566701
type: SpeciesReference

245464
stoichiometry: 1.0
species: 565259
type: SpeciesReference

566017
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: thiosulfate[p]
type: Species

574519
value: 1000.0
type: LocalParameter

566158
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Valine[e]
type: Species

277203
stoichiometry: 1.0
species: 566238
type: SpeciesReference

259615
stoichiometry: 1.0
species: 564502
type: SpeciesReference

570162
value: 1000.0
type: LocalParameter

569482
value: 0.0
type: LocalParameter

573293
value: 1000.0
type: LocalParameter

238026
stoichiometry: 1.0
species: 564366
type: SpeciesReference

570388
value: 1000.0
type: LocalParameter

572331
value: 0.0
type: LocalParameter

567829
type: Reaction
product: 286442
name: sulfoacetaldehyde acetyltransferase
reactant: 286430
product: 286454
kinetic law: 286478
reversible: false
fast: false
reactant: 286418
notes: GPR_ASSOCIATION: RSP_4011 GENE_LIST: RSP_4011; SUBSYSTEM: Taurine and hypotaurine metabolism Equation: Sulfoacetaldehyde + Orthophosphate <=> Acetyl phosphate + Sulfite + H+ Confidence Level: 3
product: 286466

270099
stoichiometry: 1.0
species: 564375
type: SpeciesReference

568911
value: 1000.0
type: LocalParameter

257513
stoichiometry: 1.0
species: 565057
type: SpeciesReference

568310
kinetic law: 314910
product: 314898
reactant: 314886
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: meso-Tartaric acid[e] <=> meso-Tartaric acid[p] Confidence Level: 2
fast: false
reversible: true
name: meso-Tartaric acid transport via diffusion
type: Reaction

288572
stoichiometry: 1.0
species: 564682
type: SpeciesReference

315755
stoichiometry: 48.8795598256
species: 564348
type: SpeciesReference

574516
value: 0.0
type: LocalParameter

268938
stoichiometry: 1.0
species: 564354
type: SpeciesReference

570169
value: 0.0
type: LocalParameter

564865
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hydrogensulfide
type: Species

573139
value: -1000.0
type: LocalParameter

566750
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: (R)-2-Methylmalate[p]
type: Species

569481
value: 0.0
type: LocalParameter

572332
value: 0.0
type: LocalParameter

306725
stoichiometry: 1.0
species: 566685
type: SpeciesReference

573296
value: 0.0
type: LocalParameter

277685
stoichiometry: 1.0
species: 564679
type: SpeciesReference

236511
stoichiometry: 1.0
species: 564538
type: SpeciesReference

568428
value: 0.0
type: LocalParameter

254484
stoichiometry: 1.0
species: 564360
type: SpeciesReference

568910
value: -1000.0
type: LocalParameter

251816
stoichiometry: 1.0
species: 564372
type: SpeciesReference

304056
stoichiometry: 1.0
species: 566254
type: SpeciesReference

568315
kinetic law: 315140
product: 315128
reactant: 315116
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Selenide[e] <=> Confidence Level:
fast: false
reversible: false
name: Selenide exchange
type: Reaction

566011
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Thiamine
type: Species

570168
value: 0.0
type: LocalParameter

573138
value: 0.0
type: LocalParameter

574517
value: -1000.0
type: LocalParameter

573417
value: 0.0
type: LocalParameter

572333
value: -1000.0
type: LocalParameter

574662
value: 1000.0
type: LocalParameter

569480
value: 1000.0
type: LocalParameter

570800
value: 0.0
type: LocalParameter

573295
value: 0.0
type: LocalParameter

568429
value: 1000.0
type: LocalParameter

566159
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Valine[e]
type: Species

265063
stoichiometry: 1.0
species: 564357
type: SpeciesReference

573418
value: 0.0
type: LocalParameter

566010
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Molybdate
type: Species

568316
kinetic law: 315178
product: 315165
reactant: 315152
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Selenide[e] <=> Selenide[p] Confidence Level: 2
fast: false
reversible: true
name: Selenide transport via diffusion
type: Reaction

570167
value: 0.0
type: LocalParameter

255419
stoichiometry: 1.0
species: 566378
type: SpeciesReference

271649
stoichiometry: 1.0
species: 565802
type: SpeciesReference

292975
stoichiometry: 1.0
species: 564345
type: SpeciesReference

291480
stoichiometry: 1.0
species: 564739
type: SpeciesReference

312251
stoichiometry: 1.0
species: 564366
type: SpeciesReference

280070
stoichiometry: 1.0
species: 565969
type: SpeciesReference

566013
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Spermidine
type: Species

568426
value: 0.0
type: LocalParameter

568313
kinetic law: 315043
product: 315030
reactant: 315018
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 4-Coumarate[e] <=> 4-Coumarate[p] Confidence Level: 2
fast: false
reversible: true
name: 4-Coumarate transport via diffusion
type: Reaction

298224
stoichiometry: 1.0
species: 564418
type: SpeciesReference

574515
value: 0.0
type: LocalParameter

570166
value: 1000.0
type: LocalParameter

566751
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (R)-2-Methylmalate[e]
type: Species

573297
value: -1000.0
type: LocalParameter

574660
value: -1000.0
type: LocalParameter

285549
stoichiometry: 1.0
species: 564357
type: SpeciesReference

305349
stoichiometry: 1.0
species: 564366
type: SpeciesReference

564862
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Erythrose4-phosphate
type: Species

572335
value: 1000.0
type: LocalParameter

568427
value: 0.0
type: LocalParameter

568314
type: Reaction
name: Selenide via proton symport
reversible: true
product: 315091
product: 315079
kinetic law: 315104
reactant: 315055
fast: false
reactant: 315067
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Selenide[p] + H+[p] <=> Selenide + H+ Confidence Level: 1

569279
value: 0.0
type: LocalParameter

568424
value: -1000.0
type: LocalParameter

568319
kinetic law: 315311
product: 315299
reactant: 315287
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 5-Methylcytosine[e] <=> 5-Methylcytosine[p] Confidence Level: 2
fast: false
reversible: true
name: 5-Methylcytosine transport via diffusion
type: Reaction

259326
stoichiometry: 1.0
species: 564673
type: SpeciesReference

298755
stoichiometry: 1.0
species: 565990
type: SpeciesReference

570805
value: 0.0
type: LocalParameter

573135
value: 1000.0
type: LocalParameter

569065
value: 0.0
type: LocalParameter

574665
value: 0.0
type: LocalParameter

569278
value: 1000.0
type: LocalParameter

311572
stoichiometry: 1.0
species: 565520
type: SpeciesReference

267865
stoichiometry: 1.0
species: 564535
type: SpeciesReference

255382
stoichiometry: 1.0
species: 566378
type: SpeciesReference

256640
stoichiometry: 1.0
species: 564748
type: SpeciesReference

568425
value: 1000.0
type: LocalParameter

301304
stoichiometry: 1.0
species: 564345
type: SpeciesReference

294425
stoichiometry: 1.0
species: 566072
type: SpeciesReference

311415
stoichiometry: 1.0
species: 564418
type: SpeciesReference

251708
stoichiometry: 1.0
species: 566456
type: SpeciesReference

273912
stoichiometry: 1.0
species: 565987
type: SpeciesReference

570804
value: 1000.0
type: LocalParameter

573134
value: -1000.0
type: LocalParameter

260815
stoichiometry: 1.0
species: 565778
type: SpeciesReference

277577
stoichiometry: 1.0
species: 565069
type: SpeciesReference

574092
value: 0.0
type: LocalParameter

569064
value: 0.0
type: LocalParameter

574666
value: 0.0
type: LocalParameter

568422
value: 0.0
type: LocalParameter

569277
value: -1000.0
type: LocalParameter

567820
reactant: 285768
reactant: 285756
name: 2-oxoglutarate dehydrogenase E1 component
notes: GPR_ASSOCIATION: RSP_0965 GENE_LIST: RSP_0965; SUBSYSTEM: Succinate metabolism Equation: 2-Oxoadipate + Enzyme N6-(lipoyl)lysine + 2 H+ <=> [Dihydrolipoyllysine-residue succinyltransferase] S-glutaryldihydrolipoyllysine + CO2 Confidence Level: 2
fast: false
reversible: false
type: Reaction
product: 285780
kinetic law: 285804
reactant: 285744
product: 285792

568317
kinetic law: 315239
fast: false
name: 5-Methylcytosine via proton symport
type: Reaction
reversible: true
product: 315215
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 5-Methylcytosine[p] + H+[p] <=> 5-Methylcytosine + H+ Confidence Level: 1
reactant: 315190
reactant: 315202
product: 315227

312142
stoichiometry: 1.0
species: 566767
type: SpeciesReference

294535
stoichiometry: 1.0
species: 566086
type: SpeciesReference

235879
stoichiometry: 1.0
species: 564366
type: SpeciesReference

276936
stoichiometry: 1.0
species: 564649
type: SpeciesReference

570803
value: 0.0
type: LocalParameter

574663
value: 0.0
type: LocalParameter

238717
stoichiometry: 1.0
species: 564408
type: SpeciesReference

272855
stoichiometry: 1.0
species: 564454
type: SpeciesReference

569063
value: 0.0
type: LocalParameter

565628
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2,3,4,5-Tetrahydrodipicolinate
type: Species

570058
value: -1000.0
type: LocalParameter

572941
value: 0.0
type: LocalParameter

297922
stoichiometry: 1.0
species: 565352
type: SpeciesReference

573137
value: 0.0
type: LocalParameter

568423
value: 0.0
type: LocalParameter

298114
stoichiometry: 1.0
species: 564940
type: SpeciesReference

252144
stoichiometry: 1.0
species: 565295
type: SpeciesReference

567821
product: 285852
product: 285864
reactant: 285828
type: Reaction
name: 2-oxoglutarate dehydrogenase E1 component
product: 285876
kinetic law: 285888
fast: false
reversible: false
reactant: 285816
notes: GPR_ASSOCIATION: RSP_0965 GENE_LIST: RSP_0965; SUBSYSTEM: Succinate metabolism Equation: 2-Oxoadipate + CoA + NAD+ <=> Glutaryl-CoA + CO2 + NADH Confidence Level: 2
reactant: 285840

315030
stoichiometry: 1.0
species: 566824
type: SpeciesReference

568318
kinetic law: 315275
product: 315263
reactant: 315251
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 5-Methylcytosine[e] <=> Confidence Level:
fast: false
reversible: false
name: 5-Methylcytosine exchange
type: Reaction

292867
stoichiometry: 1.0
species: 566254
type: SpeciesReference

570802
value: 0.0
type: LocalParameter

569062
value: 1000.0
type: LocalParameter

260534
stoichiometry: 1.0
species: 564802
type: SpeciesReference

574090
value: 1000.0
type: LocalParameter

566860
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Asn)
type: Species

569276
value: 0.0
type: LocalParameter

278952
stoichiometry: 1.0
species: 564378
type: SpeciesReference

570057
value: 0.0
type: LocalParameter

247733
stoichiometry: 1.0
species: 566298
type: SpeciesReference

569489
value: 0.0
type: LocalParameter

566019
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Thiosulfate[e]
type: Species

310750
stoichiometry: 0.162794340704026
species: 565379
type: SpeciesReference

568918
value: -1000.0
type: LocalParameter

568420
value: -1000.0
type: LocalParameter

567822
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kinetic law: 285961
reactant: 285924
name: dihydrolipoamide acetyltransferase
reactant: 285912
type: Reaction
reactant: 285900
notes: GPR_ASSOCIATION: RSP_0964 GENE_LIST: RSP_0964; SUBSYSTEM: Succinate metabolism Equation: Succinyl-CoA + Enzyme N6-(dihydrolipoyl)lysine + H+ <=> CoA + [Dihydrolipoyllysine-residue succinyltransferase]S-succinyldihydrolipoyllysine Confidence Level: 2
reversible: true
product: 285936
product: 285949

574669
value: 0.0
type: LocalParameter

570056
value: 0.0
type: LocalParameter

570809
value: 1000.0
type: LocalParameter

572943
value: -1000.0
type: LocalParameter

569061
value: 0.0
type: LocalParameter

569275
value: 0.0
type: LocalParameter

568919
value: 1000.0
type: LocalParameter

243763
stoichiometry: 1.0
species: 566392
type: SpeciesReference

573131
value: 0.0
type: LocalParameter

570161
value: 0.0
type: LocalParameter

569488
value: 1000.0
type: LocalParameter

565069
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: alpha-D-Ribose1-phosphate
type: Species

566018
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Thiosulfate[e]
type: Species

567823
fast: false
reactant: 285973
product: 286021
type: Reaction
kinetic law: 286033
reactant: 285997
product: 286009
reactant: 285985
notes: GPR_ASSOCIATION: RSP_0964 GENE_LIST: RSP_0964; SUBSYSTEM: Succinate metabolism Equation: Glutaryl-CoA + Enzyme N6-(dihydrolipoyl)lysine + H+ <=> CoA + [Dihydrolipoyllysine-residue succinyltransferase] S-glutaryldihydrolipoyllysine Confidence Level: 2
reversible: true
name: dihydrolipoamide acetyltransferase

568421
value: 1000.0
type: LocalParameter

568917
value: 0.0
type: LocalParameter

245572
stoichiometry: 1.0
species: 564577
type: SpeciesReference

257402
stoichiometry: 1.0
species: 564381
type: SpeciesReference

570808
value: -1000.0
type: LocalParameter

570055
value: 1000.0
type: LocalParameter

264311
stoichiometry: 1.0
species: 565301
type: SpeciesReference

237771
stoichiometry: 1.0
species: 564351
type: SpeciesReference

572942
value: 0.0
type: LocalParameter

569274
value: 1000.0
type: LocalParameter

565514
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Phospho-L-aspartate
type: Species

569060
value: 0.0
type: LocalParameter

573130
value: 1000.0
type: LocalParameter

570160
value: 0.0
type: LocalParameter

263974
stoichiometry: 16.0
species: 564366
type: SpeciesReference

292229
stoichiometry: 1.0
species: 564366
type: SpeciesReference

569487
value: -1000.0
type: LocalParameter

565066
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Deoxyinosine
type: Species

268240
stoichiometry: 1.0
species: 564535
type: SpeciesReference

572946
value: 0.0
type: LocalParameter

293301
stoichiometry: 1.0
species: 566136
type: SpeciesReference

567824
product: 286093
reactant: 286057
type: Reaction
name: succinyl-CoA synthetase (ADP-forming)
product: 286105
kinetic law: 286117
reactant: 286045
product: 286081
notes: GPR_ASSOCIATION: RSP_0966 and RSP_0967 GENE_LIST: RSP_0966; RSP_0967; SUBSYSTEM: Succinate metabolism Equation: ATP + Succinate + CoA <=> ADP + Orthophosphate + Succinyl-CoA Confidence Level: 2
reactant: 286069
fast: false
reversible: true

568916
value: 0.0
type: LocalParameter

297162
stoichiometry: 1.0
species: 564351
type: SpeciesReference

569273
value: -1000.0
type: LocalParameter

574667
value: 1000.0
type: LocalParameter

570807
value: 0.0
type: LocalParameter

281132
stoichiometry: 1.0
species: 566240
type: SpeciesReference

573133
value: 0.0
type: LocalParameter

565511
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Methylcrotonyl-CoA
type: Species

280491
stoichiometry: 1.0
species: 565102
type: SpeciesReference

569486
value: 0.0
type: LocalParameter

572945
value: 1000.0
type: LocalParameter

270488
stoichiometry: 1.0
species: 565592
type: SpeciesReference

568915
value: 1000.0
type: LocalParameter

567825
kinetic law: 286201
type: Reaction
fast: false
reactant: 286141
notes: GPR_ASSOCIATION: RSP_1941 GENE_LIST: RSP_1941; SUBSYSTEM: Sulfur metabolism Equation: Thioredoxin + 3'-Phosphoadenylyl sulfate <=> Thioredoxin disulfide + Sulfite + Adenosine 3',5'-bisphosphate Confidence Level: 2
product: 286165
reactant: 286129
product: 286189
product: 286153
reversible: true
name: phosphoadenosine phosphosulfate reductase
product: 286177

565625
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-1-Pyrroline-5-carboxylate
type: Species

569272
value: 0.0
type: LocalParameter

570279
value: 0.0
type: LocalParameter

570053
value: -1000.0
type: LocalParameter

566854
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 4-Aminobutyraldehyde[e]
type: Species

573566
value: 0.0
type: LocalParameter

566749
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Acetamide[e]
type: Species

315479
stoichiometry: 1.0
species: 566377
type: SpeciesReference

270269
stoichiometry: 1.0
species: 564559
type: SpeciesReference

314595
stoichiometry: 1.0
species: 566811
type: SpeciesReference

570277
value: 0.0
type: LocalParameter

569282
value: 1000.0
type: LocalParameter

281736
stoichiometry: 1.0
species: 564418
type: SpeciesReference

239089
stoichiometry: 1.0
species: 564378
type: SpeciesReference

564408
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Glutamate
type: Species

298334
stoichiometry: 1.0
species: 564363
type: SpeciesReference

572935
value: 0.0
type: LocalParameter

252360
stoichiometry: 1.0
species: 566373
type: SpeciesReference

248262
stoichiometry: 1.0
species: 565906
type: SpeciesReference

568207
kinetic law: 308054
product: 308042
reactant: 308029
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 2-Oxoglutarate[e] <=> 2-Oxoglutarate[p] Confidence Level: 2
fast: false
reversible: true
name: 2-Oxoglutarate transport via diffusion
type: Reaction

258239
stoichiometry: 1.0
species: 564424
type: SpeciesReference

573567
value: 0.0
type: LocalParameter

566855
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 4-Aminobutyraldehyde[e]
type: Species

298537
stoichiometry: 1.0
species: 564348
type: SpeciesReference

267938
stoichiometry: 1.0
species: 564369
type: SpeciesReference

282256
stoichiometry: 1.0
species: 564535
type: SpeciesReference

564643
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glutathionedisulfide
type: Species

569283
value: 0.0
type: LocalParameter

568206
kinetic law: 308017
product: 308005
reactant: 307993
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 2-Oxoglutarate[e] <=> Confidence Level:
fast: false
reversible: false
name: 2-Oxoglutarate exchange
type: Reaction

574099
value: 0.0
type: LocalParameter

316215
stoichiometry: 1.29E-4
species: 564360
type: SpeciesReference

573568
value: 1000.0
type: LocalParameter

282401
stoichiometry: 1.0
species: 564535
type: SpeciesReference

271019
stoichiometry: 1.0
species: 565262
type: SpeciesReference

564640
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Ferrocytochromec
type: Species

566856
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Proline[p]
type: Species

565063
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (-)-Ureidoglycolate
type: Species

283383
stoichiometry: 1.0
species: 564354
type: SpeciesReference

569280
value: 0.0
type: LocalParameter

570275
value: 0.0
type: LocalParameter

288464
stoichiometry: 1.0
species: 564369
type: SpeciesReference

565370
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Arg)
type: Species

568205
type: Reaction
fast: false
product: 307957
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 2-Oxoglutarate[p] + H+[p] <=> 2-Oxoglutarate + H+ Confidence Level: 1
name: 2-Oxoglutarate via proton symport
reactant: 307933
reversible: false
product: 307969
reactant: 307945
kinetic law: 307981

569058
value: 1000.0
type: LocalParameter

572937
value: 0.0
type: LocalParameter

573141
value: 1000.0
type: LocalParameter

275554
stoichiometry: 1.0
species: 564372
type: SpeciesReference

274177
stoichiometry: 1.0
species: 565958
type: SpeciesReference

295674
stoichiometry: 1.0
species: 565983
type: SpeciesReference

569281
value: -1000.0
type: LocalParameter

570276
value: 1000.0
type: LocalParameter

248988
stoichiometry: 1.0
species: 565352
type: SpeciesReference

572938
value: -1000.0
type: LocalParameter

291113
stoichiometry: 1.0
species: 564369
type: SpeciesReference

568204
kinetic law: 307921
product: 307908
reactant: 307896
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Glycolate[e] <=> Glycolate[p] Confidence Level: 2
fast: false
reversible: true
name: Glycolate transport via diffusion
type: Reaction

574097
value: 0.0
type: LocalParameter

569059
value: 0.0
type: LocalParameter

272422
stoichiometry: 1.0
species: 565954
type: SpeciesReference

566850
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 3-Sulfopyruvate[e]
type: Species

569056
value: 0.0
type: LocalParameter

565376
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Cys)
type: Species

274045
stoichiometry: 1.0
species: 564345
type: SpeciesReference

260256
stoichiometry: 2.0
species: 564393
type: SpeciesReference

299904
stoichiometry: 1.0
species: 564381
type: SpeciesReference

269191
stoichiometry: 1.0
species: 565733
type: SpeciesReference

574096
value: 1000.0
type: LocalParameter

572939
value: 1000.0
type: LocalParameter

568203
kinetic law: 307884
product: 307872
reactant: 307860
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Glycolate[e] <=> Confidence Level:
fast: false
reversible: false
name: Glycolate exchange
type: Reaction

313097
stoichiometry: 1.0
species: 566789
type: SpeciesReference

264530
stoichiometry: 1.0
species: 564363
type: SpeciesReference

573563
value: 1000.0
type: LocalParameter

566851
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 3-Sulfopyruvate[e]
type: Species

564405
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Acetyl-CoA
type: Species

289525
stoichiometry: 1.0
species: 564345
type: SpeciesReference

273380
stoichiometry: 1.0
species: 564360
type: SpeciesReference

565060
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Cholinephosphate
type: Species

570274
value: 0.0
type: LocalParameter

267530
stoichiometry: 1.0
species: 564964
type: SpeciesReference

288959
stoichiometry: 1.0
species: 564688
type: SpeciesReference

568202
reversible: false
fast: false
notes: GPR_ASSOCIATION: RSP_3174 GENE_LIST: RSP_3174; SUBSYSTEM: Transport, inner membrane Equation: Glycolate[p] + Sodium[p] <=> Glycolate + Sodium Confidence Level: 2
kinetic law: 307848
product: 307836
reactant: 307812
reactant: 307800
name: Glycolate via Na+ symport
product: 307824
type: Reaction

569057
value: 0.0
type: LocalParameter

308741
stoichiometry: 1.0
species: 566730
type: SpeciesReference

565487
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phosphoribosyl-AMP
type: Species

566852
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 4-Aminobutyraldehyde[p]
type: Species

574094
value: 0.0
type: LocalParameter

273234
stoichiometry: 3.0
species: 564418
type: SpeciesReference

298683
stoichiometry: 1.0
species: 565816
type: SpeciesReference

564402
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Pyruvate
type: Species

236669
stoichiometry: 1.0
species: 564408
type: SpeciesReference

277793
stoichiometry: 1.0
species: 564345
type: SpeciesReference

315695
stoichiometry: 1.0
species: 566815
type: SpeciesReference

570271
value: 1000.0
type: LocalParameter

573564
value: 0.0
type: LocalParameter

243980
stoichiometry: 2.0
species: 564363
type: SpeciesReference

266053
stoichiometry: 1.0
species: 565180
type: SpeciesReference

247889
stoichiometry: 1.0
species: 566315
type: SpeciesReference

257622
stoichiometry: 1.0
species: 564345
type: SpeciesReference

245356
stoichiometry: 1.0
species: 564448
type: SpeciesReference

316879
stoichiometry: 1.0
species: 566846
type: SpeciesReference

568201
kinetic law: 307788
product: 307776
reactant: 307764
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Ribitol[e] <=> Ribitol[p] Confidence Level: 2
fast: false
reversible: true
name: Ribitol transport via diffusion
type: Reaction

574093
value: 0.0
type: LocalParameter

569055
value: 0.0
type: LocalParameter

297380
stoichiometry: 1.0
species: 566458
type: SpeciesReference

565373
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Asp)
type: Species

276086
stoichiometry: 1.0
species: 564348
type: SpeciesReference

301595
stoichiometry: 1.0
species: 566533
type: SpeciesReference

570272
value: 0.0
type: LocalParameter

256059
stoichiometry: 1.0
species: 564697
type: SpeciesReference

316362
stoichiometry: 5.9E-5
species: 564511
type: SpeciesReference

316435
stoichiometry: 5.9E-5
species: 564469
type: SpeciesReference

317519
stoichiometry: 1.0
species: 564348
type: SpeciesReference

286792
stoichiometry: 1.0
species: 564378
type: SpeciesReference

568200
kinetic law: 307752
product: 307739
reactant: 307727
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Ribitol[e] <=> Confidence Level:
fast: false
reversible: false
name: Ribitol exchange
type: Reaction

266164
stoichiometry: 1.0
species: 564351
type: SpeciesReference

570382
value: 1000.0
type: LocalParameter

566741
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Chitobiose[e]
type: Species

307208
stoichiometry: 1.0
species: 566696
type: SpeciesReference

574513
value: 1000.0
type: LocalParameter

265268
stoichiometry: 1.0
species: 564348
type: SpeciesReference

260960
stoichiometry: 1.0
species: 565694
type: SpeciesReference

310306
stoichiometry: 0.002783
species: 566796
type: SpeciesReference

572336
value: 0.0
type: LocalParameter

564796
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hexadecanoicacid
type: Species

570270
value: 0.0
type: LocalParameter

570383
value: 0.0
type: LocalParameter

260148
stoichiometry: 1.0
species: 564348
type: SpeciesReference

573288
value: 1000.0
type: LocalParameter

564514
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: HemeA
type: Species

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stoichiometry: 1.0
species: 566270
type: SpeciesReference

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stoichiometry: 1.0
species: 564402
type: SpeciesReference

565484
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 1-(5-Phospho-D-ribosyl)-ATP
type: Species

566742
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-1-Aminopropan-2-olO-phosphate[p]
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Glu)
type: Species

574512
value: 0.0
type: LocalParameter

267422
stoichiometry: 1.0
species: 565685
type: SpeciesReference

290413
stoichiometry: 1.0
species: 566103
type: SpeciesReference

572339
value: -1000.0
type: LocalParameter

564793
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxopropanoate
type: Species

570380
value: 0.0
type: LocalParameter

566743
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-1-Aminopropan-2-olO-phosphate[e]
type: Species

573560
value: 0.0
type: LocalParameter

574511
value: 0.0
type: LocalParameter

289633
stoichiometry: 1.0
species: 566038
type: SpeciesReference

238873
stoichiometry: 1.0
species: 564348
type: SpeciesReference

564511
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Thiamindiphosphate
type: Species

573289
value: 0.0
type: LocalParameter

259772
stoichiometry: 1.0
species: 564408
type: SpeciesReference

310603
stoichiometry: 5.9E-5
species: 564469
type: SpeciesReference

277130
stoichiometry: 1.0
species: 564345
type: SpeciesReference

257730
stoichiometry: 1.0
species: 564508
type: SpeciesReference

235576
stoichiometry: 1.0
species: 564445
type: SpeciesReference

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Leucine[e]
type: Species

570381
value: -1000.0
type: LocalParameter

572338
value: 0.0
type: LocalParameter

573561
value: -1000.0
type: LocalParameter

564649
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: IMP
type: Species

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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phosphatidylserine
type: Species

297704
stoichiometry: 1.0
species: 565877
type: SpeciesReference

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stoichiometry: 0.0629368267907612
species: 565589
type: SpeciesReference

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stoichiometry: 1.0
species: 566676
type: SpeciesReference

564646
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Isopentenyldiphosphate
type: Species

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Methionine
type: Species

564799
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Acetylphosphate
type: Species

566745
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-1-Aminopropan-2-olO-phosphate[e]
type: Species

566151
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Leucine[e]
type: Species

566858
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Proline[e]
type: Species

245248
stoichiometry: 1.0
species: 565259
type: SpeciesReference

570387
value: 0.0
type: LocalParameter

282365
stoichiometry: 1.0
species: 564985
type: SpeciesReference

566746
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Acetamide[p]
type: Species

315323
stoichiometry: 1.0
species: 566836
type: SpeciesReference

573410
value: 0.0
type: LocalParameter

566859
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Proline[e]
type: Species

289731
stoichiometry: 1.0
species: 566060
type: SpeciesReference

566152
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Isoleucine[p]
type: Species

237613
stoichiometry: 1.0
species: 564345
type: SpeciesReference

568209
kinetic law: 308150
product: 308138
reactant: 308126
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 4-Hydroxy-2-oxoglutarate[e] <=> Confidence Level:
fast: false
reversible: false
name: 4-Hydroxy-2-oxoglutarate exchange
type: Reaction

259894
stoichiometry: 1.0
species: 565138
type: SpeciesReference

291004
stoichiometry: 1.0
species: 564535
type: SpeciesReference

282510
stoichiometry: 1.0
species: 564535
type: SpeciesReference

566747
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Acetamide[e]
type: Species

568208
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reactant: 308066
product: 308102
kinetic law: 308114
product: 308090
name: 4-Hydroxy-2-oxoglutarate via proton symport
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 4-Hydroxy-2-oxoglutarate[p] + H+[p] <=> 4-Hydroxy-2-oxoglutarate + H+ Confidence Level: 1
reversible: false
reactant: 308078
type: Reaction

566154
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Isoleucine[e]
type: Species

305011
stoichiometry: 1.0
species: 566638
type: SpeciesReference

248831
stoichiometry: 1.0
species: 564802
type: SpeciesReference

247468
stoichiometry: 1.0
species: 566266
type: SpeciesReference

272531
stoichiometry: 4.0
species: 564408
type: SpeciesReference

271867
stoichiometry: 1.0
species: 564393
type: SpeciesReference

287084
stoichiometry: 1.0
species: 564345
type: SpeciesReference

570385
value: 0.0
type: LocalParameter

288356
stoichiometry: 1.0
species: 564535
type: SpeciesReference

573412
value: 0.0
type: LocalParameter

574506
value: -1000.0
type: LocalParameter

286045
stoichiometry: 1.0
species: 564348
type: SpeciesReference

570062
value: 0.0
type: LocalParameter

569495
value: -1000.0
type: LocalParameter

570175
value: 0.0
type: LocalParameter

290642
stoichiometry: 1.0
species: 564664
type: SpeciesReference

573282
value: 1000.0
type: LocalParameter

573428
value: 0.0
type: LocalParameter

573429
value: -1000.0
type: LocalParameter

277215
stoichiometry: 1.0
species: 564369
type: SpeciesReference

568900
value: 0.0
type: LocalParameter

567816
kinetic law: 285525
product: 285513
reactant: 285501
notes: GPR_ASSOCIATION: RSP_0024 or RSP_3843 GENE_LIST: RSP_0024; RSP_3843; SUBSYSTEM: Polyketide sugar unit biosynthesis Equation: 4,6-Dideoxy-4-oxo-dTDP-D-glucose <=> dTDP-4-dehydro-6-deoxy-L-mannose Confidence Level: 2
fast: false
reversible: true
name: dTDP-4-dehydrorhamnose 3,5-epimerase
type: Reaction

566005
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-4'-Phosphopantothenate
type: Species

277360
stoichiometry: 1.0
species: 564775
type: SpeciesReference

568321
kinetic law: 315407
product: 315395
reactant: 315383
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Aminoacetaldehyde[e] <=> Confidence Level:
fast: false
reversible: false
name: Aminoacetaldehyde exchange
type: Reaction

245476
stoichiometry: 1.0
species: 564865
type: SpeciesReference

307376
stoichiometry: 1.0
species: 566700
type: SpeciesReference

573281
value: -1000.0
type: LocalParameter

569494
value: 0.0
type: LocalParameter

570174
value: 1000.0
type: LocalParameter

238014
stoichiometry: 1.0
species: 564667
type: SpeciesReference

573427
value: 0.0
type: LocalParameter

570061
value: 0.0
type: LocalParameter

291584
stoichiometry: 1.0
species: 564517
type: SpeciesReference

567817
type: Reaction
name: dTDP-4-dehydrorhamnose reductase
reactant: 285549
reactant: 285537
reversible: true
reactant: 285561
product: 285573
fast: false
product: 285585
notes: GPR_ASSOCIATION: RSP_3845 GENE_LIST: RSP_3845; SUBSYSTEM: Polyketide sugar unit biosynthesis Equation: dTDP-4-dehydro-6-deoxy-L-mannose + NADPH + H+ <=> dTDP-6-deoxy-L-mannose + NADP+ Confidence Level: 2
kinetic law: 285598

267726
stoichiometry: 1.0
species: 565864
type: SpeciesReference

257525
stoichiometry: 1.0
species: 564351
type: SpeciesReference

564508
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Formaldehyde
type: Species

270087
stoichiometry: 1.0
species: 564345
type: SpeciesReference

574508
value: 1000.0
type: LocalParameter

568322
kinetic law: 315443
product: 315431
reactant: 315419
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Aminoacetaldehyde[e] <=> Aminoacetaldehyde[p] Confidence Level: 2
fast: false
reversible: true
name: Aminoacetaldehyde transport via diffusion
type: Reaction

565505
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Histidyl-tRNA(His)
type: Species

570177
value: -1000.0
type: LocalParameter

264433
stoichiometry: 1.0
species: 564961
type: SpeciesReference

245260
stoichiometry: 1.0
species: 564577
type: SpeciesReference

565610
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Dihydrolipoylprotein
type: Species

575207
value: 1000.0
type: LocalParameter

573280
value: 0.0
type: LocalParameter

265498
stoichiometry: 1.0
species: 564577
type: SpeciesReference

569497
value: 0.0
type: LocalParameter

566168
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine
type: Species

243101
stoichiometry: 1.0
species: 564378
type: SpeciesReference

306931
stoichiometry: 1.0
species: 566692
type: SpeciesReference

568323
fast: false
product: 315491
product: 315479
type: Reaction
reactant: 315455
reactant: 315467
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Ethanolamine[p] + H+[p] <=> Ethanolamine + H+ Confidence Level: 1
name: Ethanolamine via proton symport
reversible: true
kinetic law: 315503

574509
value: 0.0
type: LocalParameter

566003
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Hydroxybenzoate
type: Species

567814
product: 285417
type: Reaction
reactant: 285392
kinetic law: 285441
name: glucose-1-phosphate thymidylyltransferase
reversible: true
fast: false
reactant: 285405
reactant: 285380
product: 285429
notes: GPR_ASSOCIATION: RSP_3848 GENE_LIST: RSP_3848; SUBSYSTEM: Polyketide sugar unit biosynthesis Equation: dTTP + D-Glucose 1-phosphate + H+ <=> Diphosphate + dTDP-glucose Confidence Level: 2

568902
value: 0.0
type: LocalParameter

570176
value: 0.0
type: LocalParameter

564856
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: CDP-diacylglycerol
type: Species

575208
value: 0.0
type: LocalParameter

261754
stoichiometry: 1.0
species: 564535
type: SpeciesReference

573425
value: 1000.0
type: LocalParameter

281012
stoichiometry: 1.0
species: 564384
type: SpeciesReference

570063
value: -1000.0
type: LocalParameter

569496
value: 1000.0
type: LocalParameter

566167
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Alanyl-D-alanine[e]
type: Species

271782
stoichiometry: 1.0
species: 565835
type: SpeciesReference

568324
kinetic law: 315539
product: 315527
reactant: 315515
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Ethanolamine[e] <=> Confidence Level:
fast: false
reversible: false
name: Ethanolamine exchange
type: Reaction

567815
kinetic law: 285489
product: 285477
product: 285465
reactant: 285453
notes: GPR_ASSOCIATION: RSP_3844 or RSP_0514 or RSP_0160 GENE_LIST: RSP_3844; RSP_0514; RSP_0160; SUBSYSTEM: Polyketide sugar unit biosynthesis Equation: DTDP-glucose <=> 4,6-Dideoxy-4-oxo-dTDP-D-glucose + H2O Confidence Level: 2
fast: false
reversible: false
name: dTDP-glucose 4,6-dehydratase
type: Reaction

566002
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Octaprenylphenol
type: Species

568901
value: 0.0
type: LocalParameter

294413
stoichiometry: 1.0
species: 566073
type: SpeciesReference

292963
stoichiometry: 1.0
species: 564348
type: SpeciesReference

564790
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Nickel
type: Species

569491
value: -1000.0
type: LocalParameter

573286
value: -1000.0
type: LocalParameter

572322
value: -1000.0
type: LocalParameter

574502
value: 1000.0
type: LocalParameter

570179
value: 0.0
type: LocalParameter

271637
stoichiometry: 1.0
species: 564399
type: SpeciesReference

566001
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Octaprenyl-4-hydroxybenzoate
type: Species

568325
kinetic law: 315575
product: 315563
reactant: 315551
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Ethanolamine[e] <=> Ethanolamine[p] Confidence Level: 2
fast: false
reversible: true
name: Ethanolamine transport via diffusion
type: Reaction

307497
stoichiometry: 1.0
species: 566705
type: SpeciesReference

258903
stoichiometry: 1.0
species: 564354
type: SpeciesReference

569269
value: -1000.0
type: LocalParameter

303610
stoichiometry: 1.0
species: 566596
type: SpeciesReference

570810
value: 0.0
type: LocalParameter

568438
value: 0.0
type: LocalParameter

301426
stoichiometry: 1.0
species: 566529
type: SpeciesReference

569490
value: 0.0
type: LocalParameter

564850
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dCTP
type: Species

573285
value: 0.0
type: LocalParameter

249904
stoichiometry: 1.0
species: 564357
type: SpeciesReference

305337
stoichiometry: 1.0
species: 566648
type: SpeciesReference

573128
value: -1000.0
type: LocalParameter

289960
stoichiometry: 1.0
species: 564369
type: SpeciesReference

570178
value: 1000.0
type: LocalParameter

565508
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Threonyl-tRNA(Thr)
type: Species

566763
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Iminoaspartate
type: Species

568326
product: 315659
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + Dethiobiotin[p] <=> ADP + H+ + Orthophosphate + Dethiobiotin Confidence Level: 1
product: 315635
fast: false
reactant: 315611
reversible: false
name: ABC Dethiobiotin transporter
reactant: 315599
type: Reaction
product: 315647
product: 315623
reactant: 315587
kinetic law: 315671

568100
kinetic law: 303031
product: 303019
reactant: 303007
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: (S)-Lactate[e] <=> Confidence Level:
fast: false
reversible: false
name: (S)-Lactate exchange
type: Reaction

246852
stoichiometry: 1.0
species: 566061
type: SpeciesReference

569268
value: 0.0
type: LocalParameter

316577
stoichiometry: 0.071328403696196
species: 565376
type: SpeciesReference

568439
value: 0.0
type: LocalParameter

570813
value: 0.0
type: LocalParameter

570060
value: 1000.0
type: LocalParameter

573284
value: 0.0
type: LocalParameter

569493
value: 0.0
type: LocalParameter

236523
stoichiometry: 1.0
species: 564411
type: SpeciesReference

567819
product: 285719
kinetic law: 285732
type: Reaction
reactant: 285695
product: 285707
reactant: 285683
reactant: 285671
notes: GPR_ASSOCIATION: RSP_0965 GENE_LIST: RSP_0965; SUBSYSTEM: Succinate metabolism Equation: 3-Carboxy-1-hydroxypropyl-ThPP + Enzyme N6-(lipoyl)lysine + 2H+ <=> [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine + Thiamin diphosphate Confidence Level: 2
fast: false
name: 2-oxoglutarate dehydrogenase E1 component
reversible: false

566762
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Pyridine-2,3-dicarboxylate
type: Species

573127
value: 0.0
type: LocalParameter

277697
stoichiometry: 1.0
species: 565102
type: SpeciesReference

315767
stoichiometry: 0.817579349929507
species: 565208
type: SpeciesReference

304044
stoichiometry: 1.0
species: 564820
type: SpeciesReference

572320
value: 0.0
type: LocalParameter

564853
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glycolaldehyde
type: Species

574504
value: 0.0
type: LocalParameter

568101
kinetic law: 303067
product: 303055
reactant: 303043
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: (S)-Lactate[e] <=> (S)-Lactate[p] Confidence Level: 2
fast: false
reversible: true
name: (S)-Lactate transport via diffusion
type: Reaction

568327
kinetic law: 315707
product: 315695
reactant: 315683
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Dethiobiotin[e] <=> Confidence Level:
fast: false
reversible: false
name: Dethiobiotin exchange
type: Reaction

567818
product: 285646
reactant: 285622
reversible: false
name: 2-oxoglutarate dehydrogenase E1 component
product: 285634
kinetic law: 285658
reactant: 285610
notes: GPR_ASSOCIATION: RSP_0965 GENE_LIST: RSP_0965; SUBSYSTEM: Succinate metabolism Equation: 2-Oxoglutarate + Thiamin diphosphate <=> 3-Carboxy-1-hydroxypropyl-ThPP + CO2 Confidence Level: 2
fast: false
type: Reaction

251828
stoichiometry: 1.0
species: 566457
type: SpeciesReference

252288
stoichiometry: 1.0
species: 565490
type: SpeciesReference

572321
value: 0.0
type: LocalParameter

570812
value: 0.0
type: LocalParameter

569492
value: 1000.0
type: LocalParameter

573126
value: 0.0
type: LocalParameter

566761
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Hydrogensulfide[e]
type: Species

574505
value: 0.0
type: LocalParameter

255285
stoichiometry: 1.0
species: 564393
type: SpeciesReference

297934
stoichiometry: 1.0
species: 564535
type: SpeciesReference

568102
product: 303103
kinetic law: 303127
reactant: 303091
product: 303115
reversible: true
name: (R)-Malate transport via Na+ symport
fast: false
type: Reaction
notes: GPR_ASSOCIATION: RSP_0910 and RSP_0911 and RSP_0912 GENE_LIST: RSP_0910; RSP_0911; RSP_0912; SUBSYSTEM: Transport, inner membrane Equation: (R)-Malate[p] + 2 Sodium[p] <=> (R)-Malate + 2 Sodium Confidence Level: 3
reactant: 303079

256761
stoichiometry: 1.0
species: 564505
type: SpeciesReference

255407
stoichiometry: 1.0
species: 564393
type: SpeciesReference

568328
kinetic law: 315743
product: 315731
reactant: 315719
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Dethiobiotin[e] <=> Dethiobiotin[p] Confidence Level: 2
fast: false
reversible: true
name: Dethiobiotin transport via diffusion
type: Reaction

265051
stoichiometry: 1.0
species: 565229
type: SpeciesReference

235867
stoichiometry: 1.0
species: 564466
type: SpeciesReference

568329
product: 316590
product: 316711
reactant: 316398
reactant: 316337
reactant: 315888
reactant: 315828
reactant: 316178
product: 316675
reactant: 316227
reactant: 316325
reactant: 315876
reversible: false
product: 316639
reactant: 316202
product: 316747
reactant: 315755
product: 316651
product: 316538
reactant: 315852
product: 316699
product: 316615
reactant: 315767
fast: false
reactant: 315900
product: 316723
reactant: 316422
reactant: 315972
reactant: 315912
product: 316525
reactant: 315792
reactant: 316104
reactant: 315864
reactant: 315960
product: 316486
reactant: 315948
reactant: 316374
reactant: 316251
reactant: 316044
reactant: 315804
reactant: 316141
reactant: 316386
reactant: 316154
reactant: 316056
product: 316577
reactant: 316166
product: 316473
reactant: 316301
reactant: 316116
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Biomass production Equation: 48.8795598256 ATP + 0.817579349929507 L-Alanyl-tRNA(Ala) + 0.430368015578729 L-Arginyl-tRNA(Arg) + 0.142057409042004 L-Asparaginyl-tRNA(Asn) + 0.333864881166228 L-Aspartyl-tRNA(Asp) + 0.071328403696196 L-Cysteinyl-tRNA(Cys) + 0.16003935955365 L-Glutamyl-tRNA(Glu) + 0.400398098059319 Glutaminyl-tRNA(Gln) + 0.552645279057922 Glycyl-tRNA(Gly) + 0.136063425538122 L-Histidyl-tRNA(His) + 0.29010880158789 L-Isoleucyl-tRNA(Ile) + 0.550247685656369 L-Leucyl-tRNA(Leu) + 0.16663274140792 L-Lysyl-tRNA(Lys) + 0.158241164502485 L-Methionyl-tRNA(Met) + 0.203795439131989 L-Phenylalanyl-tRNA(Phe) + 0.323675109209629 L-Prolyl-tRNA(Pro) + 0.27332564777702 L-Seryl-tRNA(Ser) + 0.312885938902641 L-Threonyl-tRNA(Thr) + 0.0629368267907612 L-Tryptophanyl-tRNA(Trp) + 0.120479068428029 L-Tyrosyl-tRNA(Tyr) + 0.451946356192704 L-Valyl-tRNA(Val) + 0.093471857028361 GTP + 0.0907387617936135 CTP + 0.0437295237559583 UTP + 0.0185403408113183 dATP + 0.0185642947400151 dGTP + 0.0411528495010915 dCTP + 0.0414882045028466 dTTP + 0.027400 Peptidoglycan + 0.00834 LPS + 0.077027 Phosphatidylethanolamine + 0.086655 Phosphatidylglycerol + 0.038513 Phosphatidylcholine + 0.002407 Cardiolipin + 0.024071 Sulfoquinovosyldiacylglycerol + 0.0000676933681191807 Spheroidenone + 0.002140 NAD + 0.00005 NADH + 0.000129 NADP + 0.000398 NADPH + 0.000003 Succinyl-CoA + 0.00005 Acetyl-CoA + 0.000059 CoA + 0.00001 FAD + 0.049752 5-Methyltetrahydrofolate + 0.000995 AMP + 0.002990 D-Glucose 1-phosphate + 0.034830 Putrescine + 0.006970 Spermidine + 0.000059 S-Adenosyl-L-methionine + 0.000059 Thiamindiphosphate + 0.000059 Pyridoxalphosphate + 0.000059 HemeO + 0.000059 Riboflavin + 0.000059 di-trans,poly-cis-Undecaprenyldiphosphate + 0.000059 ubiquinol + 0.000059 Glutathione + 0.000059 Biotinyl-5'-AMP <=> 48.8340638966 ADP + 48.8340638966 Orthophosphate + 48.8340638966 H2O + 48.8340638966 H+ + 0.284470 Diphosphate + 0.817579349929507 tRNA(Ala) + 0.43036801557872…
reactant: 316020
reactant: 316128
reactant: 316032
reactant: 316264
product: 316735
reactant: 316435
kinetic law: 316771
type: Reaction
reactant: 315984
reactant: 316276
product: 316603
reactant: 315779
reactant: 316080
product: 316512
reactant: 316410
reactant: 316313
reactant: 316349
reactant: 316068
product: 316663
product: 316759
product: 316499
reactant: 316447
product: 316627
reactant: 316239
reactant: 315840
reactant: 315996
reactant: 316362
reactant: 316092
product: 316687
reactant: 316288
product: 316551

568434
value: 0.0
type: LocalParameter

260522
stoichiometry: 1.0
species: 565882
type: SpeciesReference

569265
value: -1000.0
type: LocalParameter

568909
value: 0.0
type: LocalParameter

272867
stoichiometry: 1.0
species: 565846
type: SpeciesReference

569051
value: 0.0
type: LocalParameter

572953
value: 0.0
type: LocalParameter

565616
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxopalmitoyl-CoA
type: Species

575201
value: 1000.0
type: LocalParameter

570815
value: 0.0
type: LocalParameter

238729
stoichiometry: 1.0
species: 564369
type: SpeciesReference

574651
value: 1000.0
type: LocalParameter

240624
stoichiometry: 1.0
species: 564526
type: SpeciesReference

266779
stoichiometry: 1.0
species: 564937
type: SpeciesReference

254497
stoichiometry: 1.0
species: 565319
type: SpeciesReference

568435
value: 0.0
type: LocalParameter

298126
stoichiometry: 1.0
species: 565532
type: SpeciesReference

568907
value: 1000.0
type: LocalParameter

568908
value: 0.0
type: LocalParameter

569264
value: 0.0
type: LocalParameter

569050
value: 0.0
type: LocalParameter

314387
stoichiometry: 1.0
species: 566803
type: SpeciesReference

566872
name: succinate semialdehyde dehydrogenase
kinetic law: 235843
reactant: 235781
product: 235818
fast: false
reactant: 235793
reactant: 235768
type: Reaction
product: 235805
product: 235830
notes: GPR_ASSOCIATION: RSP_1012 or RSP_4032 GENE_LIST: RSP_1012; RSP_4032; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: Succinate semialdehyde + NAD+ + H2O <=> Succinate + NADH + H+ Confidence Level: 4
reversible: true

573124
value: 1000.0
type: LocalParameter

278964
stoichiometry: 1.0
species: 564676
type: SpeciesReference

572952
value: 0.0
type: LocalParameter

294523
stoichiometry: 1.0
species: 566087
type: SpeciesReference

292855
stoichiometry: 1.0
species: 564487
type: SpeciesReference

574652
value: 0.0
type: LocalParameter

570814
value: 1000.0
type: LocalParameter

308042
stoichiometry: 1.0
species: 566715
type: SpeciesReference

290073
stoichiometry: 1.0
species: 564613
type: SpeciesReference

569267
value: 0.0
type: LocalParameter

259338
stoichiometry: 1.0
species: 564360
type: SpeciesReference

311585
stoichiometry: 1.0
species: 564862
type: SpeciesReference

568210
kinetic law: 308186
product: 308174
reactant: 308162
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 4-Hydroxy-2-oxoglutarate[e] <=> 4-Hydroxy-2-oxoglutarate[p] Confidence Level: 2
fast: false
reversible: true
name: 4-Hydroxy-2-oxoglutarate transport via diffusion
type: Reaction

568436
value: 0.0
type: LocalParameter

565619
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5'-Phosphoribosylglycinamide
type: Species

246960
stoichiometry: 1.0
species: 566077
type: SpeciesReference

569053
value: 1000.0
type: LocalParameter

288693
stoichiometry: 1.0
species: 564348
type: SpeciesReference

570817
value: 0.0
type: LocalParameter

298767
stoichiometry: 1.0
species: 565858
type: SpeciesReference

573123
value: -1000.0
type: LocalParameter

246091
stoichiometry: 1.0
species: 566154
type: SpeciesReference

301316
stoichiometry: 1.0
species: 566528
type: SpeciesReference

311427
stoichiometry: 1.0
species: 564535
type: SpeciesReference

271032
stoichiometry: 2.0
species: 564375
type: SpeciesReference

276804
stoichiometry: 1.0
species: 565922
type: SpeciesReference

281880
stoichiometry: 1.0
species: 564348
type: SpeciesReference

316422
stoichiometry: 5.9E-5
species: 564964
type: SpeciesReference

260680
stoichiometry: 1.0
species: 564427
type: SpeciesReference

569266
value: 1000.0
type: LocalParameter

255516
stoichiometry: 1.0
species: 564535
type: SpeciesReference

256652
stoichiometry: 1.0
species: 564436
type: SpeciesReference

568211
product: 308234
product: 308222
type: Reaction
reversible: true
kinetic law: 308246
reactant: 308210
reactant: 308198
name: D-Altronate via proton symport
fast: false
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: D-Altronate[p] + H+[p] <=> D-Altronate + H+ Confidence Level: 1

568437
value: 1000.0
type: LocalParameter

575200
value: -1000.0
type: LocalParameter

572950
value: 1000.0
type: LocalParameter

569052
value: 0.0
type: LocalParameter

574654
value: 0.0
type: LocalParameter

306605
stoichiometry: 1.0
species: 566682
type: SpeciesReference

260827
stoichiometry: 1.0
species: 564535
type: SpeciesReference

573122
value: 0.0
type: LocalParameter

567812
type: Reaction
product: 285284
name: glycogen synthase
reversible: false
fast: false
product: 285296
kinetic law: 285320
reactant: 285272
product: 285308
notes: GPR_ASSOCIATION: RSP_2885 GENE_LIST: RSP_2885; SUBSYSTEM: Starch and sucrose metabolism Equation: ADP-glucose <=> ADP + Glycogen + H+ Confidence Level: 3

568430
value: 0.0
type: LocalParameter

568904
value: 0.0
type: LocalParameter

292362
stoichiometry: 1.0
species: 566210
type: SpeciesReference

566009
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Thiosulfate
type: Species

298006
stoichiometry: 1.0
species: 564535
type: SpeciesReference

569499
value: -1000.0
type: LocalParameter

565078
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Mannose1-phosphate
type: Species

575205
value: -1000.0
type: LocalParameter

281120
stoichiometry: 1.0
species: 564345
type: SpeciesReference

570171
value: 0.0
type: LocalParameter

297150
stoichiometry: 1.0
species: 566468
type: SpeciesReference

258383
stoichiometry: 1.0
species: 564535
type: SpeciesReference

574655
value: -1000.0
type: LocalParameter

569261
value: -1000.0
type: LocalParameter

570066
value: 0.0
type: LocalParameter

570819
value: 1000.0
type: LocalParameter

568903
value: 1000.0
type: LocalParameter

572957
value: 0.0
type: LocalParameter

270476
stoichiometry: 1.0
species: 564369
type: SpeciesReference

568431
value: 0.0
type: LocalParameter

567813
kinetic law: 285368
product: 285356
reactant: 285344
reactant: 285332
notes: GPR_ASSOCIATION: RSP_2887 GENE_LIST: RSP_2887; SUBSYSTEM: Starch and sucrose metabolism Equation: Glycogen + Orthophosphate <=> D-Glucose 1-phosphate Confidence Level: 3
fast: false
reversible: false
name: glycogen phosphorylase
type: Reaction

569498
value: 0.0
type: LocalParameter

570065
value: 1000.0
type: LocalParameter

570818
value: -1000.0
type: LocalParameter

573120
value: 0.0
type: LocalParameter

570170
value: 1000.0
type: LocalParameter

574656
value: 1000.0
type: LocalParameter

250013
stoichiometry: 1.0
species: 566429
type: SpeciesReference

565613
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-Hydroxyoctanoyl-CoA
type: Species

569260
value: 0.0
type: LocalParameter

568432
value: -1000.0
type: LocalParameter

568906
value: 0.0
type: LocalParameter

572956
value: 1000.0
type: LocalParameter

276290
stoichiometry: 1.0
species: 564348
type: SpeciesReference

247745
stoichiometry: 1.0
species: 566299
type: SpeciesReference

567810
reactant: 285176
fast: false
type: Reaction
name: putative trehalose-6-phosphate phosphatase
kinetic law: 285224
reactant: 285188
notes: GPR_ASSOCIATION: RSP_0949 GENE_LIST: RSP_0949; SUBSYSTEM: Starch and sucrose metabolism Equation: alpha,alpha'-Trehalose 6-phosphate + H2O <=> alpha,alpha-Trehalose + Orthophosphate Confidence Level: 2
product: 285212
product: 285200
reversible: false

566007
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Glutamyl-tRNA(Gln)
type: Species

575203
value: 0.0
type: LocalParameter

570173
value: 0.0
type: LocalParameter

570068
value: 0.0
type: LocalParameter

265280
stoichiometry: 1.0
species: 565202
type: SpeciesReference

294100
stoichiometry: 1.0
species: 566034
type: SpeciesReference

569263
value: 0.0
type: LocalParameter

243751
stoichiometry: 1.0
species: 564393
type: SpeciesReference

568905
value: 0.0
type: LocalParameter

566006
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glutaminyl-tRNA
type: Species

567811
kinetic law: 285260
product: 285248
reactant: 285236
notes: GPR_ASSOCIATION: RSP_2446 GENE_LIST: RSP_2446; SUBSYSTEM: Starch and sucrose metabolism Equation: Maltose <=> alpha,alpha-Trehalose Confidence Level: 2
fast: false
reversible: true
name: putative trehalose synthase
type: Reaction

568433
value: 1000.0
type: LocalParameter

245584
stoichiometry: 1.0
species: 564568
type: SpeciesReference

257414
stoichiometry: 1.0
species: 564375
type: SpeciesReference

259602
stoichiometry: 1.0
species: 565777
type: SpeciesReference

261646
stoichiometry: 1.0
species: 565682
type: SpeciesReference

263962
stoichiometry: 16.0
species: 564369
type: SpeciesReference

292217
stoichiometry: 1.0
species: 566206
type: SpeciesReference

570172
value: 0.0
type: LocalParameter

575204
value: 0.0
type: LocalParameter

572954
value: -1000.0
type: LocalParameter

570067
value: 0.0
type: LocalParameter

264323
stoichiometry: 1.0
species: 564375
type: SpeciesReference

574658
value: 0.0
type: LocalParameter

569262
value: 1000.0
type: LocalParameter

565502
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Glutamyl-tRNA(Glu)
type: Species

237905
stoichiometry: 1.0
species: 564535
type: SpeciesReference

288476
stoichiometry: 1.0
species: 565132
type: SpeciesReference

289851
stoichiometry: 1.0
species: 564535
type: SpeciesReference

570287
value: 0.0
type: LocalParameter

250994
stoichiometry: 1.0
species: 565904
type: SpeciesReference

566868
type: Reaction
notes: GPR_ASSOCIATION: RSP_0723 GENE_LIST: RSP_0723; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-Alanine + NAD+ + H2O <=> Pyruvate + NH3 + NADH + H+ Confidence Level: 3
product: 235624
fast: false
product: 235612
kinetic law: 235660
product: 235648
name: L-alanine dehydrogenase
reactant: 235600
product: 235636
reactant: 235588
reactant: 235576
reversible: true

565075
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Phospho-D-glycerate
type: Species

316202
stoichiometry: 5.0E-5
species: 564354
type: SpeciesReference

572949
value: -1000.0
type: LocalParameter

565382
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Gly)
type: Species

568217
reactant: 308475
fast: false
type: Reaction
product: 308499
reversible: false
notes: GPR_ASSOCIATION: RSP_2246 GENE_LIST: RSP_2246; SUBSYSTEM: Histidine metabolism Equation: L-Histidinol phosphate + H2O <=> L-Histidinol + Orthophosphate Confidence Level: 2
reactant: 308463
kinetic law: 308511
product: 308487

569046
value: 0.0
type: LocalParameter

574086
value: 0.0
type: LocalParameter

574659
value: 0.0
type: LocalParameter

254418
stoichiometry: 1.0
species: 564574
type: SpeciesReference

275566
stoichiometry: 1.0
species: 566486
type: SpeciesReference

566869
kinetic law: 235756
type: Reaction
product: 235732
fast: false
reversible: false
product: 235744
product: 235720
notes: GPR_ASSOCIATION: RSP_0723 GENE_LIST: RSP_0723; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: Pyruvate + NH3 + NADPH + H+ <=> L-Alanine + NADP+ + H2O Confidence Level: 3
reactant: 235672
reactant: 235708
reactant: 235684
reactant: 235696
name: L-alanine dehydrogenase

274189
stoichiometry: 1.0
species: 565945
type: SpeciesReference

304490
stoichiometry: 1.0
species: 566622
type: SpeciesReference

240406
stoichiometry: 1.0
species: 564381
type: SpeciesReference

268228
stoichiometry: 1.0
species: 565238
type: SpeciesReference

272410
stoichiometry: 1.0
species: 564348
type: SpeciesReference

246744
stoichiometry: 1.0
species: 566049
type: SpeciesReference

266998
stoichiometry: 1.0
species: 564535
type: SpeciesReference

248976
stoichiometry: 1.0
species: 566351
type: SpeciesReference

568216
kinetic law: 308451
product: 308439
reactant: 308427
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Deoxyribose[e] <=> Deoxyribose[p] Confidence Level: 2
fast: false
reversible: true
name: Deoxyribose transport via diffusion
type: Reaction

291101
stoichiometry: 1.0
species: 564535
type: SpeciesReference

317301
stoichiometry: 1.0
species: 564568
type: SpeciesReference

569047
value: 0.0
type: LocalParameter

574085
value: 1000.0
type: LocalParameter

570289
value: 0.0
type: LocalParameter

239077
stoichiometry: 1.0
species: 564396
type: SpeciesReference

569270
value: 1000.0
type: LocalParameter

281724
stoichiometry: 1.0
species: 564877
type: SpeciesReference

566866
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Sulfite[e]
type: Species

573578
value: 0.0
type: LocalParameter

292639
stoichiometry: 1.0
species: 564369
type: SpeciesReference

286490
stoichiometry: 1.0
species: 565976
type: SpeciesReference

315467
stoichiometry: 1.0
species: 566248
type: SpeciesReference

237759
stoichiometry: 1.0
species: 566220
type: SpeciesReference

568219
name: ABC Cys-Gly transporter
type: Reaction
kinetic law: 308680
product: 308668
product: 308656
notes: GPR_ASSOCIATION: (RSP_0804 and RSP_0805 and RSP_0806 and RSP_0807) or (RSP_0803 and RSP_0805 and RSP_0806 and RSP_0807) or (RSP_1451 and RSP_1452 and RSP_1453 and RSP_1454) or (RSP_3524 and RSP_3523 and RSP_3522 and RSP_3520) or (RSP_3525 and RSP_3523 and RSP_3522 and RSP_3520) or (RSP_3248 and RSP_3249 and RSP_3250 and RSP_3251) or (RSP_3255 and RSP_3257 and RSP_3258 and RSP_3252) or (RSP_0704 and RSP_0703 and RSP_0702 and RSP_0701) or (RSP_3231 and RSP_3232 and RSP_3235 and RSP_3236) or (RSP_3231 and RSP_3232 and RSP_3235 and RSP_3235) or (RSP_2702 and RSP_2700 and RSP_2701 and RSP_2703) GENE_LIST: RSP_0804; RSP_0805; RSP_0806; RSP_0807; RSP_0803; RSP_0805; RSP_0806; RSP_0807; RSP_1451; RSP_1452; RSP_1453; RSP_1454; RSP_3524; RSP_3523; RSP_3522; RSP_3520; RSP_3525; RSP_3523; RSP_3522; RSP_3520; RSP_3248; RSP_3249; RSP_3250; RSP_3251; RSP_3255; RSP_3257; RSP_3258; RSP_3252; RSP_0704; RSP_0703; RSP_0702; RSP_0701; RSP_3231; RSP_3232; RSP_3235; RSP_3236; RSP_3231; RSP_3232; RSP_3235; RSP_3235; RSP_2702; RSP_2700; RSP_2701; RSP_2703; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + Cys-Gly[p] <=> ADP + H+ + Orthophosphate + Cys-Gly Confidence Level: 3
product: 308632
reactant: 308608
fast: false
product: 308644
reactant: 308620
reactant: 308596
reversible: false

258227
stoichiometry: 1.0
species: 564348
type: SpeciesReference

248250
stoichiometry: 1.0
species: 564351
type: SpeciesReference

569048
value: 0.0
type: LocalParameter

574088
value: 0.0
type: LocalParameter

282268
stoichiometry: 1.0
species: 565973
type: SpeciesReference

569271
value: 0.0
type: LocalParameter

564631
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Fumarate
type: Species

566867
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Sulfite[e]
type: Species

283370
stoichiometry: 1.0
species: 565421
type: SpeciesReference

298549
stoichiometry: 1.0
species: 565912
type: SpeciesReference

573579
value: 1000.0
type: LocalParameter

568218
product: 308547
notes: GPR_ASSOCIATION: RSP_0311 GENE_LIST: RSP_0311; SUBSYSTEM: Glycine, serine and threonine metabolism Equation: ATP + L-Homoserine <=> ADP + O-Phospho-L-homoserine + H+ Confidence Level: 2
kinetic law: 308584
type: Reaction
fast: false
product: 308572
reactant: 308535
reactant: 308523
reversible: true
product: 308560

569049
value: 1000.0
type: LocalParameter

298347
stoichiometry: 1.0
species: 564823
type: SpeciesReference

572948
value: 0.0
type: LocalParameter

285561
stoichiometry: 1.0
species: 564535
type: SpeciesReference

315683
stoichiometry: 1.0
species: 566814
type: SpeciesReference

575210
value: 0.0
type: LocalParameter

569042
value: 0.0
type: LocalParameter

566864
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Sulfite[p]
type: Species

565499
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Aspartyl-tRNA(Asp)
type: Species

273222
stoichiometry: 1.0
species: 565442
type: SpeciesReference

298695
stoichiometry: 1.0
species: 564351
type: SpeciesReference

574082
value: 0.0
type: LocalParameter

282967
stoichiometry: 1.0
species: 564952
type: SpeciesReference

257634
stoichiometry: 1.0
species: 564778
type: SpeciesReference

254301
stoichiometry: 1.0
species: 564369
type: SpeciesReference

568213
kinetic law: 308318
product: 308306
reactant: 308294
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: D-Altronate[e] <=> D-Altronate[p] Confidence Level: 2
fast: false
reversible: true
name: D-Altronate transport via diffusion
type: Reaction

266065
stoichiometry: 1.0
species: 564769
type: SpeciesReference

245368
stoichiometry: 1.0
species: 564535
type: SpeciesReference

291259
stoichiometry: 1.0
species: 564535
type: SpeciesReference

570284
value: 0.0
type: LocalParameter

238122
stoichiometry: 1.0
species: 564535
type: SpeciesReference

573577
value: 0.0
type: LocalParameter

569043
value: 0.0
type: LocalParameter

574081
value: 0.0
type: LocalParameter

565385
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(His)
type: Species

568212
kinetic law: 308282
product: 308270
reactant: 308258
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: D-Altronate[e] <=> Confidence Level:
fast: false
reversible: false
name: D-Altronate exchange
type: Reaction

570390
value: 0.0
type: LocalParameter

274057
stoichiometry: 1.0
species: 565957
type: SpeciesReference

260244
stoichiometry: 2.0
species: 564553
type: SpeciesReference

570285
value: -1000.0
type: LocalParameter

566862
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Gln)
type: Species

565388
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Ile)
type: Species

569044
value: 0.0
type: LocalParameter

573574
value: 1000.0
type: LocalParameter

568215
kinetic law: 308415
product: 308403
reactant: 308391
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Deoxyribose[e] <=> Confidence Level:
fast: false
reversible: false
name: Deoxyribose exchange
type: Reaction

313085
stoichiometry: 1.0
species: 564802
type: SpeciesReference

299916
stoichiometry: 1.0
species: 564375
type: SpeciesReference

250848
stoichiometry: 1.0
species: 566418
type: SpeciesReference

565072
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Acetyl-L-glutamate
type: Species

573575
value: 0.0
type: LocalParameter

570391
value: -1000.0
type: LocalParameter

283487
stoichiometry: 1.0
species: 564405
type: SpeciesReference

264542
stoichiometry: 8.0
species: 564535
type: SpeciesReference

293469
stoichiometry: 1.0
species: 566158
type: SpeciesReference

307908
stoichiometry: 1.0
species: 566711
type: SpeciesReference

570286
value: 1000.0
type: LocalParameter

569045
value: 1000.0
type: LocalParameter

574083
value: 0.0
type: LocalParameter

566863
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Sulfoquinovosyldiacylglycerol
type: Species

289513
stoichiometry: 1.0
species: 564348
type: SpeciesReference

287859
stoichiometry: 1.0
species: 566111
type: SpeciesReference

568214
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Deoxyribose[p] + H+[p] <=> Deoxyribose + H+ Confidence Level: 1
reversible: false
kinetic law: 308379
type: Reaction
product: 308367
reactant: 308343
reactant: 308330
name: Deoxyribose via proton symport
product: 308355
fast: false

267542
stoichiometry: 1.0
species: 564760
type: SpeciesReference

568104
kinetic law: 303200
product: 303188
reactant: 303176
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: (R)-Malate[e] <=> (R)-Malate[p] Confidence Level: 2
fast: false
reversible: true
name: (R)-Malate transport via diffusion
type: Reaction

255999
stoichiometry: 1.0
species: 565081
type: SpeciesReference

267434
stoichiometry: 1.0
species: 564619
type: SpeciesReference

240068
stoichiometry: 1.0
species: 565385
type: SpeciesReference

279901
stoichiometry: 1.0
species: 564535
type: SpeciesReference

575101
value: -1000.0
type: LocalParameter

289621
stoichiometry: 1.0
species: 564345
type: SpeciesReference

569199
value: 0.0
type: LocalParameter

238885
stoichiometry: 1.0
species: 564445
type: SpeciesReference

573572
value: 0.0
type: LocalParameter

316141
stoichiometry: 0.038513
species: 564697
type: SpeciesReference

237600
stoichiometry: 1.0
species: 564351
type: SpeciesReference

276182
stoichiometry: 1.0
species: 564535
type: SpeciesReference

573277
value: 1000.0
type: LocalParameter

238232
stoichiometry: 1.0
species: 564931
type: SpeciesReference

564781
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Thymidine
type: Species

572327
value: 0.0
type: LocalParameter

566755
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 3-Phospho-D-glycerate[e]
type: Species

290425
stoichiometry: 1.0
species: 564366
type: SpeciesReference

246502
stoichiometry: 1.0
species: 566208
type: SpeciesReference

235588
stoichiometry: 1.0
species: 564345
type: SpeciesReference

257742
stoichiometry: 1.0
species: 564418
type: SpeciesReference

259760
stoichiometry: 1.0
species: 565331
type: SpeciesReference

280058
stoichiometry: 1.0
species: 564366
type: SpeciesReference

568103
kinetic law: 303164
product: 303151
reactant: 303139
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: (R)-Malate[e] <=> Confidence Level:
fast: false
reversible: false
name: (R)-Malate exchange
type: Reaction

316759
stoichiometry: 0.451946356192704
species: 565415
type: SpeciesReference

277142
stoichiometry: 1.0
species: 564901
type: SpeciesReference

573420
value: 1000.0
type: LocalParameter

575100
value: 0.0
type: LocalParameter

573278
value: 0.0
type: LocalParameter

564637
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Ferricytochromec
type: Species

304260
stoichiometry: 1.0
species: 566612
type: SpeciesReference

566162
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Methionine[e]
type: Species

570393
value: 1000.0
type: LocalParameter

291368
stoichiometry: 1.0
species: 564369
type: SpeciesReference

570280
value: -1000.0
type: LocalParameter

266176
stoichiometry: 1.0
species: 565217
type: SpeciesReference

246636
stoichiometry: 1.0
species: 566028
type: SpeciesReference

568106
kinetic law: 303272
product: 303260
reactant: 303248
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Magnesium[e] <=> Confidence Level:
fast: false
reversible: false
name: Magnesium exchange
type: Reaction

573570
value: 0.0
type: LocalParameter

574501
value: -1000.0
type: LocalParameter

566753
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (R)-2-Methylmalate[e]
type: Species

570281
value: 1000.0
type: LocalParameter

572325
value: 0.0
type: LocalParameter

264650
stoichiometry: 1.0
species: 564351
type: SpeciesReference

573275
value: -1000.0
type: LocalParameter

570394
value: 0.0
type: LocalParameter

260972
stoichiometry: 1.0
species: 564369
type: SpeciesReference

310318
stoichiometry: 0.027828
species: 566863
type: SpeciesReference

568105
kinetic law: 303236
product: 303224
reactant: 303212
notes: GPR_ASSOCIATION: RSP_1897 GENE_LIST: RSP_1897; SUBSYSTEM: Transport, inner membrane Equation: Magnesium[p] <=> Magnesium Confidence Level: 2
fast: false
reversible: false
name: Magnesium transporter
type: Reaction

287701
stoichiometry: 1.0
species: 565271
type: SpeciesReference

564502
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Glutamine
type: Species

565496
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-3-Hydroxyisobutyryl-CoA
type: Species

566754
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 3-Phospho-D-glycerate[p]
type: Species

574500
value: 0.0
type: LocalParameter

573571
value: 0.0
type: LocalParameter

564784
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (2E)-Octadecenoyl-[acp]
type: Species

566160
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Methionine[p]
type: Species

570395
value: 0.0
type: LocalParameter

570282
value: 0.0
type: LocalParameter

572324
value: 1000.0
type: LocalParameter

308198
stoichiometry: 1.0
species: 566722
type: SpeciesReference

568108
fast: false
reactant: 303332
kinetic law: 303368
reactant: 303320
type: Reaction
product: 303344
reversible: true
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Gluconate[p] + H+[p] <=> Gluconate + H+ Confidence Level: 1
product: 303356
name: Gluconate via proton symport

566759
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Hydrogensulfide[e]
type: Species

288802
stoichiometry: 1.0
species: 564345
type: SpeciesReference

573423
value: 0.0
type: LocalParameter

570396
value: -1000.0
type: LocalParameter

565490
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (2S,3S)-3-Hydroxy-2-methylbutanoyl-CoA
type: Species

574089
value: -1000.0
type: LocalParameter

568107
kinetic law: 303308
product: 303296
reactant: 303284
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Magnesium[e] <=> Magnesium[p] Confidence Level: 2
fast: false
reversible: true
name: Magnesium transport via diffusion
type: Reaction

312021
stoichiometry: 1.0
species: 564511
type: SpeciesReference

566166
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Alanyl-D-alanine[e]
type: Species

288368
stoichiometry: 1.0
species: 564369
type: SpeciesReference

573424
value: 0.0
type: LocalParameter

295771
stoichiometry: 1.0
species: 564375
type: SpeciesReference

271855
stoichiometry: 1.0
species: 565835
type: SpeciesReference

564859
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Mannose6-phosphate
type: Species

287072
stoichiometry: 1.0
species: 564360
type: SpeciesReference

285671
stoichiometry: 1.0
species: 565796
type: SpeciesReference

248141
stoichiometry: 1.0
species: 564535
type: SpeciesReference

297716
stoichiometry: 1.0
species: 566363
type: SpeciesReference

568320
reversible: true
reactant: 315323
product: 315359
type: Reaction
reactant: 315335
name: Aminoacetaldehyde via proton symport
product: 315347
fast: false
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Aminoacetaldehyde[p] + H+[p] <=> Aminoacetaldehyde + H+ Confidence Level: 1
kinetic law: 315371

268336
stoichiometry: 1.0
species: 564535
type: SpeciesReference

292094
stoichiometry: 1.0
species: 564348
type: SpeciesReference

573421
value: 0.0
type: LocalParameter

566757
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 3-Phospho-D-glycerate[e]
type: Species

566163
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Methionine[e]
type: Species

565493
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Tyrosyl-tRNA(Tyr)
type: Species

570398
value: 1000.0
type: LocalParameter

564787
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Glutamate
type: Species

564634
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Leucine
type: Species

315984
stoichiometry: 0.120479068428029
species: 565493
type: SpeciesReference

564505
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Serine
type: Species

566164
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Alanyl-D-alanine[p]
type: Species

568109
kinetic law: 303404
product: 303392
reactant: 303380
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Gluconate[e] <=> Confidence Level:
fast: false
reversible: false
name: Gluconate exchange
type: Reaction

572329
value: 1000.0
type: LocalParameter

566758
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Hydrogensulfide[p]
type: Species

292747
stoichiometry: 1.0
species: 566254
type: SpeciesReference

572328
value: -1000.0
type: LocalParameter

289743
stoichiometry: 1.0
species: 564366
type: SpeciesReference

570399
value: 0.0
type: LocalParameter

282811
stoichiometry: 1.0
species: 564381
type: SpeciesReference

282377
stoichiometry: 1.0
species: 564345
type: SpeciesReference

564847
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Homoserine
type: Species

274262
stoichiometry: 1.0
species: 564535
type: SpeciesReference

244742
stoichiometry: 1.0
species: 564535
type: SpeciesReference

571178
value: 1000.0
type: LocalParameter

566130
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Arginine[e]
type: Species

566558
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: beta-Alanine[e]
type: Species

570361
value: 0.0
type: LocalParameter

570605
value: 0.0
type: LocalParameter

310550
stoichiometry: 5.9E-5
species: 564706
type: SpeciesReference

573925
value: 1000.0
type: LocalParameter

566356
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-trans-Dodecenoyl-CoA
type: Species

574077
value: 0.0
type: LocalParameter

566469
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-2,3-Dihydroxy-3-methylbutanoate
type: Species

567517
kinetic law: 265932
reactant: 265884
reactant: 265872
type: Reaction
product: 265896
product: 265908
product: 265920
name: 2-deoxy-D-gluconate 3-dehydrogenase
notes: GPR_ASSOCIATION: RSP_0481 GENE_LIST: RSP_0481; SUBSYSTEM: Pentose and glucuronate interconversions Equation: 2-Dehydro-3-deoxy-D-gluconate + NAD+ <=> (4S)-4,6-Dihydroxy-2,5-dioxohexanoate + NADH + H+ Confidence Level: 2
fast: false
reversible: true

566557
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: beta-Alanine[e]
type: Species

571179
value: 0.0
type: LocalParameter

317049
stoichiometry: 1.0
species: 564354
type: SpeciesReference

264482
stoichiometry: 2.0
species: 564640
type: SpeciesReference

567740
reactant: 280455
fast: false
product: 280491
kinetic law: 280504
notes: GPR_ASSOCIATION: RSP_2207 or RSP_1595 GENE_LIST: RSP_2207; RSP_1595; SUBSYSTEM: Pyrimidine metabolism Equation: Deoxyuridine + Orthophosphate <=> Uracil + 2-Deoxy-D-ribose 1-phosphate Confidence Level: 2
product: 280479
name: purine nucleoside phosphorylase
type: Reaction
reactant: 280467
reversible: true

566355
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Lauroyl-CoA
type: Species

566468
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (2R,3S)-3-Isopropylmalate
type: Species

574078
value: -1000.0
type: LocalParameter

284669
stoichiometry: 1.0
species: 564366
type: SpeciesReference

567518
reactant: 265957
fast: false
product: 265993
notes: GPR_ASSOCIATION: RSP_0490 GENE_LIST: RSP_0490; SUBSYSTEM: Pentose and glucuronate interconversions Equation: ATP + 2-Dehydro-3-deoxy-D-gluconate <=> ADP + 2-Dehydro-3-deoxy-6-phospho-D-gluconate + H+ Confidence Level: 2
kinetic law: 266005
type: Reaction
product: 265981
reactant: 265944
product: 265969
reversible: true
name: 2-keto-3-deoxygluconate kinase

566556
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: beta-Alanine[p]
type: Species

570363
value: 1000.0
type: LocalParameter

289755
stoichiometry: 1.0
species: 564535
type: SpeciesReference

570607
value: 1000.0
type: LocalParameter

299663
stoichiometry: 1.0
species: 564411
type: SpeciesReference

566354
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans-Tetradec-2-enoyl-CoA
type: Species

567515
kinetic law: 265860
product: 265848
reactant: 265836
notes: GPR_ASSOCIATION: RSP_0482 GENE_LIST: RSP_0482; SUBSYSTEM: Pentose and glucuronate interconversions Equation: 5-Dehydro-4-deoxy-D-glucuronate <=> (4S)-4,6-Dihydroxy-2,5-dioxohexanoate Confidence Level: 2
fast: false
reversible: true
name: 5-keto-4-deoxyuronate isomerase
type: Reaction

574079
value: 1000.0
type: LocalParameter

265714
stoichiometry: 1.0
species: 564372
type: SpeciesReference

248468
stoichiometry: 1.0
species: 564351
type: SpeciesReference

288236
stoichiometry: 1.0
species: 566026
type: SpeciesReference

566769
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Biotin[e]
type: Species

316276
stoichiometry: 1.0E-5
species: 564387
type: SpeciesReference

573923
value: 0.0
type: LocalParameter

570606
value: 0.0
type: LocalParameter

570362
value: 0.0
type: LocalParameter

244028
stoichiometry: 3.0
species: 564345
type: SpeciesReference

566466
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (2S)-2-Isopropyl-3-oxosuccinate
type: Species

573924
value: 0.0
type: LocalParameter

281336
stoichiometry: 1.0
species: 564592
type: SpeciesReference

265148
stoichiometry: 1.0
species: 564378
type: SpeciesReference

271080
stoichiometry: 1.0
species: 565442
type: SpeciesReference

318437
stoichiometry: 1.0
species: 564673
type: SpeciesReference

273828
stoichiometry: 1.0
species: 564357
type: SpeciesReference

256144
stoichiometry: 1.0
species: 564345
type: SpeciesReference

281965
stoichiometry: 1.0
species: 564366
type: SpeciesReference

573920
value: 1000.0
type: LocalParameter

239464
stoichiometry: 1.0
species: 565451
type: SpeciesReference

264782
stoichiometry: 4.0
species: 566248
type: SpeciesReference

309920
stoichiometry: 0.831653485843787
species: 565208
type: SpeciesReference

243967
stoichiometry: 2.0
species: 565943
type: SpeciesReference

566554
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Urea[e]
type: Species

280046
stoichiometry: 1.0
species: 566236
type: SpeciesReference

252603
stoichiometry: 1.0
species: 564351
type: SpeciesReference

277154
stoichiometry: 1.0
species: 564369
type: SpeciesReference

247080
stoichiometry: 1.0
species: 566092
type: SpeciesReference

566033
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: thiamine[e]
type: Species

259796
stoichiometry: 1.0
species: 565199
type: SpeciesReference

570600
value: 0.0
type: LocalParameter

566352
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Tetradecanoyl-CoA
type: Species

258951
stoichiometry: 1.0
species: 564351
type: SpeciesReference

298839
stoichiometry: 1.0
species: 566366
type: SpeciesReference

567743
notes: GPR_ASSOCIATION: RSP_2894 GENE_LIST: RSP_2894; SUBSYSTEM: Pyrimidine metabolism Equation: ATP + dTDP <=> ADP + dTTP Confidence Level: 2
product: 280673
fast: false
product: 280661
kinetic law: 280685
reactant: 280637
reactant: 280649
name: nucleoside diphosphate kinase
type: Reaction
reversible: true

302704
stoichiometry: 1.0
species: 564736
type: SpeciesReference

251503
stoichiometry: 1.0
species: 564405
type: SpeciesReference

285152
stoichiometry: 1.0
species: 564535
type: SpeciesReference

282919
stoichiometry: 1.0
species: 564366
type: SpeciesReference

573921
value: 0.0
type: LocalParameter

566767
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Biotin[e]
type: Species

566553
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Urea[e]
type: Species

293085
stoichiometry: 1.0
species: 566192
type: SpeciesReference

267446
stoichiometry: 1.0
species: 564402
type: SpeciesReference

272651
stoichiometry: 1.0
species: 564369
type: SpeciesReference

299517
stoichiometry: 1.0
species: 564961
type: SpeciesReference

253113
stoichiometry: 1.0
species: 564396
type: SpeciesReference

566032
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: thiamine[e]
type: Species

566351
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans-Hexadec-2-enoyl-CoA
type: Species

267385
stoichiometry: 1.0
species: 565069
type: SpeciesReference

567744
kinetic law: 280745
reactant: 280697
reactant: 280709
name: nucleoside diphosphate kinase
type: Reaction
reversible: true
fast: false
product: 280721
notes: GPR_ASSOCIATION: RSP_2894 GENE_LIST: RSP_2894; SUBSYSTEM: Pyrimidine metabolism Equation: ATP + dCDP <=> ADP + dCTP Confidence Level: 2
product: 280733

566766
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Biotin[p]
type: Species

566350
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Palmitoyl-CoA
type: Species

570603
value: 0.0
type: LocalParameter

288512
stoichiometry: 1.0
species: 564345
type: SpeciesReference

313470
stoichiometry: 1.0
species: 564348
type: SpeciesReference

305760
stoichiometry: 1.0
species: 566656
type: SpeciesReference

566552
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Urea[p]
type: Species

281421
stoichiometry: 1.0
species: 566234
type: SpeciesReference

278107
stoichiometry: 1.0
species: 564345
type: SpeciesReference

567519
kinetic law: 266041
product: 266029
reactant: 266017
notes: GPR_ASSOCIATION: RSP_0488 GENE_LIST: RSP_0488; SUBSYSTEM: Pentose and glucuronate interconversions Equation: D-Glucuronate <=> D-Fructuronate Confidence Level: 2
fast: false
reversible: true
name: glucuronate isomerase
type: Reaction

316915
stoichiometry: 1.0
species: 566276
type: SpeciesReference

567741
reactant: 280528
product: 280540
notes: GPR_ASSOCIATION: RSP_2894 GENE_LIST: RSP_2894; SUBSYSTEM: Pyrimidine metabolism Equation: ATP + UDP <=> ADP + UTP Confidence Level: 2
fast: false
reactant: 280516
kinetic law: 280565
name: nucleoside diphosphate kinase
reversible: true
product: 280553
type: Reaction

303007
stoichiometry: 1.0
species: 566577
type: SpeciesReference

253827
stoichiometry: 1.0
species: 564408
type: SpeciesReference

570602
value: 1000.0
type: LocalParameter

565081
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 1,2-Diacyl-sn-glycerol
type: Species

237289
stoichiometry: 1.0
species: 564408
type: SpeciesReference

566765
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Phospho-D-erythronate
type: Species

566030
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: thiamine[p]
type: Species

311136
stoichiometry: 1.0
species: 564487
type: SpeciesReference

302644
stoichiometry: 1.0
species: 566565
type: SpeciesReference

567742
kinetic law: 280625
name: nucleoside diphosphate kinase
product: 280601
reversible: true
reactant: 280589
fast: false
type: Reaction
notes: GPR_ASSOCIATION: RSP_2894 GENE_LIST: RSP_2894; SUBSYSTEM: Pyrimidine metabolism Equation: ATP + CDP <=> ADP + CTP Confidence Level: 2
product: 280613
reactant: 280577

262817
stoichiometry: 1.0
species: 564396
type: SpeciesReference

236910
stoichiometry: 1.0
species: 564408
type: SpeciesReference

248686
stoichiometry: 1.0
species: 564360
type: SpeciesReference

570601
value: -1000.0
type: LocalParameter

566461
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Pyridoxamine
type: Species

572817
value: -1000.0
type: LocalParameter

574138
value: -1000.0
type: LocalParameter

286889
stoichiometry: 1.0
species: 565979
type: SpeciesReference

248794
stoichiometry: 1.0
species: 564802
type: SpeciesReference

567852
name: 2-Oxopentanoic acid transport via Na+ symport
type: Reaction
product: 288175
reactant: 288163
reactant: 288151
reversible: true
fast: false
kinetic law: 288200
notes: GPR_ASSOCIATION: RSP_0097 and RSP_6094 and RSP_0099 GENE_LIST: RSP_0097; RSP_6094; RSP_0099; SUBSYSTEM: Transport, inner membrane Equation: 2-Oxopentanoic acid[p] + 2 Sodium[p] <=> 2-Oxopentanoic acid + 2 Sodium Confidence Level: 4
product: 288187

571717
value: 1000.0
type: LocalParameter

566550
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Ornithine[e]
type: Species

252009
stoichiometry: 1.0
species: 566359
type: SpeciesReference

575196
value: 1000.0
type: LocalParameter

253719
stoichiometry: 1.0
species: 564408
type: SpeciesReference

281856
stoichiometry: 1.0
species: 564375
type: SpeciesReference

316386
stoichiometry: 5.9E-5
species: 564706
type: SpeciesReference

256035
stoichiometry: 1.0
species: 564535
type: SpeciesReference

316855
stoichiometry: 1.0
species: 566847
type: SpeciesReference

304975
stoichiometry: 1.0
species: 564535
type: SpeciesReference

279306
stoichiometry: 1.0
species: 564345
type: SpeciesReference

572816
value: 0.0
type: LocalParameter

567853
kinetic law: 288296
fast: false
product: 288284
reactant: 288212
type: Reaction
reactant: 288224
product: 288248
product: 288260
reactant: 288236
reversible: true
notes: GPR_ASSOCIATION: RSP_3871 and RSP_3869 and RSP_3868 GENE_LIST: RSP_3871; RSP_3869; RSP_3868; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + Molybdate[p] <=> ADP + H+ + Orthophosphate + Molybdate Confidence Level: 3
product: 288272
name: ABC molybdate transporter

253004
stoichiometry: 1.0
species: 564586
type: SpeciesReference

259688
stoichiometry: 1.0
species: 565724
type: SpeciesReference

567028
reversible: true
product: 244281
fast: false
type: Reaction
product: 244293
name: isocitrate dehydrogenase
product: 244269
notes: GPR_ASSOCIATION: RSP_1559 or RSP_0446 GENE_LIST: RSP_1559; RSP_0446; SUBSYSTEM: Citrate cycle (TCA cycle) Equation: Isocitrate + NADP+ <=> 2-Oxoglutarate + CO2 + NADPH Confidence Level: 4
kinetic law: 244305
reactant: 244257
reactant: 244244

574070
value: 0.0
type: LocalParameter

571171
value: 0.0
type: LocalParameter

575197
value: 0.0
type: LocalParameter

571026
value: 0.0
type: LocalParameter

566460
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-3-Hydroxyisobutyrate
type: Species

246936
stoichiometry: 1.0
species: 566075
type: SpeciesReference

307160
stoichiometry: 1.0
species: 566697
type: SpeciesReference

314994
stoichiometry: 1.0
species: 566827
type: SpeciesReference

572815
value: 0.0
type: LocalParameter

271382
stoichiometry: 1.0
species: 564345
type: SpeciesReference

567850
fast: false
kinetic law: 288077
reactant: 288041
reactant: 288029
notes: GPR_ASSOCIATION: RSP_0097 and RSP_6094 and RSP_0099 GENE_LIST: RSP_0097; RSP_6094; RSP_0099; SUBSYSTEM: Transport, inner membrane Equation: Pyruvate[p] + 2 Sodium[p] <=> Pyruvate + 2 Sodium Confidence Level: 4
type: Reaction
name: Pyruvate transport via Na+ symport
product: 288065
product: 288053
reversible: true

571719
value: 0.0
type: LocalParameter

567027
reactant: 244148
type: Reaction
product: 244196
name: spheroidene monooxygenase
reactant: 244172
product: 244208
kinetic law: 244232
fast: false
reactant: 244160
product: 244220
reversible: true
notes: GPR_ASSOCIATION: RSP_0272 GENE_LIST: RSP_0272; SUBSYSTEM: Carotenoid biosynthesis Equation: 2-Ketospirilloxanthin + 2 Reduced ferredoxin + 2 Oxygen + 4 H+ <=> 2,2'-Diketospirilloxanthin + 2 Oxidized ferredoxin + 3 H2O Confidence Level: 3
reactant: 244184

575194
value: 0.0
type: LocalParameter

567628
fast: false
reactant: 272783
type: Reaction
product: 272819
notes: GPR_ASSOCIATION: RSP_0602 GENE_LIST: RSP_0602; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Adenosyl cobinamide + ATP <=> Adenosyl cobinamide phosphate + ADP + H+ Confidence Level: 3
reactant: 272771
name: adenosylcobinamide kinase
product: 272807
product: 272795
kinetic law: 272831
reversible: true

250290
stoichiometry: 1.0
species: 566434
type: SpeciesReference

252761
stoichiometry: 1.0
species: 565874
type: SpeciesReference

571172
value: -1000.0
type: LocalParameter

260160
stoichiometry: 1.0
species: 564796
type: SpeciesReference

574071
value: 0.0
type: LocalParameter

571027
value: -1000.0
type: LocalParameter

565084
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Pyridoxaminephosphate
type: Species

288669
stoichiometry: 1.0
species: 564610
type: SpeciesReference

567851
product: 288126
fast: false
notes: GPR_ASSOCIATION: RSP_0097 and RSP_6094 and RSP_0099 GENE_LIST: RSP_0097; RSP_6094; RSP_0099; SUBSYSTEM: Transport, inner membrane Equation: 2-Oxobutanoate[p] + 2 Sodium[p] <=> 2-Oxobutanoate + 2 Sodium Confidence Level: 4
name: 2-Oxobutanoate transport via Na+ symport
kinetic law: 288139
type: Reaction
product: 288114
reversible: false
reactant: 288102
reactant: 288089

303115
stoichiometry: 2.0
species: 566254
type: SpeciesReference

567026
reactant: 244076
fast: false
product: 244100
reactant: 244052
kinetic law: 244136
product: 244112
reactant: 244088
type: Reaction
product: 244124
reactant: 244064
name: spheroidene monooxygenase
reversible: true
notes: GPR_ASSOCIATION: RSP_0272 GENE_LIST: RSP_0272; SUBSYSTEM: Carotenoid biosynthesis Equation: Spirilloxanthin + 2 Reduced ferredoxin + 2 Oxygen + 4 H+ <=> 2-Ketospirilloxanthin + 2 Oxidized ferredoxin + 3 H2O Confidence Level: 3

567629
type: Reaction
product: 272892
reactant: 272843
fast: false
name: adenosylcobinamide kinase
kinetic law: 272904
product: 272880
notes: GPR_ASSOCIATION: RSP_0602 GENE_LIST: RSP_0602; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Adenosyl cobinamide + GTP <=> Adenosyl cobinamide phosphate + GDP + H+ Confidence Level: 3
product: 272867
reversible: true
reactant: 272855

272011
stoichiometry: 1.0
species: 565832
type: SpeciesReference

566999
reversible: true
name: phytoene dehydrogenase
type: Reaction
reactant: 242833
product: 242870
notes: GPR_ASSOCIATION: RSP_0271 GENE_LIST: RSP_0271; SUBSYSTEM: Carotenoid biosynthesis Equation: zeta-Carotene + NAD+ <=> Neurosporene + NADH + H+ Confidence Level: 4
product: 242882
kinetic law: 242895
reactant: 242846
fast: false
product: 242858

571173
value: 1000.0
type: LocalParameter

574072
value: -1000.0
type: LocalParameter

274021
stoichiometry: 1.0
species: 565943
type: SpeciesReference

571028
value: 1000.0
type: LocalParameter

317313
stoichiometry: 1.0
species: 564535
type: SpeciesReference

574134
value: 1000.0
type: LocalParameter

567626
product: 272627
name: adenosylcobinamide-phosphate synthase
reactant: 272615
product: 272639
type: Reaction
reactant: 272603
reversible: true
product: 272663
fast: false
reactant: 272591
kinetic law: 272675
product: 272651
notes: GPR_ASSOCIATION: RSP_0430 GENE_LIST: RSP_0430; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Adenosyl cobyrinate hexaamide + D-1-Aminopropan-2-ol O-phosphate + ATP <=> Adenosyl cobinamide phosphate + ADP + Orthophosphate + H+ Confidence Level: 3

298284
stoichiometry: 1.0
species: 564418
type: SpeciesReference

266986
stoichiometry: 1.0
species: 564922
type: SpeciesReference

566465
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: [Dihydrolipoyllysine-residue(2-methylpropanoyl)transferase]
type: Species

291429
stoichiometry: 1.0
species: 566156
type: SpeciesReference

571712
value: 1000.0
type: LocalParameter

566998
notes: GPR_ASSOCIATION: RSP_0271 GENE_LIST: RSP_0271; SUBSYSTEM: Carotenoid biosynthesis Equation: Phytoene + NAD+ <=> Phytofluene + NADH + H+ Confidence Level: 4
fast: false
kinetic law: 242820
name: phytoene dehydrogenase
product: 242782
reversible: true
reactant: 242770
type: Reaction
product: 242807
product: 242795
reactant: 242758

248310
stoichiometry: 1.0
species: 566437
type: SpeciesReference

571021
value: 0.0
type: LocalParameter

571174
value: 0.0
type: LocalParameter

274153
stoichiometry: 1.0
species: 564535
type: SpeciesReference

566359
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans-Dec-2-enoyl-CoA
type: Species

571714
value: 0.0
type: LocalParameter

567627
reactant: 272687
name: adenosylcobinamide-phosphate synthase
product: 272735
kinetic law: 272759
product: 272747
reversible: false
product: 272723
reactant: 272699
notes: GPR_ASSOCIATION: RSP_0430 GENE_LIST: RSP_0430; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: ATP + Adenosyl cobyrinate hexaamide + (R)-1-Aminopropan-2-ol <=> ADP + Orthophosphate + Adenosyl cobinamide Confidence Level: 3
reactant: 272711
fast: false
type: Reaction

574074
value: 1000.0
type: LocalParameter

566464
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: [Dihydrolipoyllysine-residue(2-methylpropanoyl)transferase]
type: Species

565087
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Xanthosine5'-phosphate
type: Species

570608
value: 0.0
type: LocalParameter

244632
stoichiometry: 1.0
species: 564631
type: SpeciesReference

294450
stoichiometry: 1.0
species: 566077
type: SpeciesReference

564955
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Cytosine
type: Species

571022
value: -1000.0
type: LocalParameter

567624
name: cob(I)yrinic acid a,c-diamide adenosyltransferase
reactant: 272422
kinetic law: 272459
reversible: true
reactant: 272410
product: 272447
type: Reaction
product: 272435
fast: false
notes: GPR_ASSOCIATION: RSP_2831 GENE_LIST: RSP_2831; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Cob(I)yrinate a,c diamide + ATP <=> Adenosyl cobyrinate a,c diamide + Triphosphate Confidence Level: 2

574075
value: 0.0
type: LocalParameter

571715
value: 0.0
type: LocalParameter

566358
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Decanoyl-CoA
type: Species

574136
value: 0.0
type: LocalParameter

285573
stoichiometry: 1.0
species: 565547
type: SpeciesReference

572819
value: 1000.0
type: LocalParameter

295976
stoichiometry: 1.0
species: 565998
type: SpeciesReference

571023
value: 1000.0
type: LocalParameter

566996
reversible: true
product: 242710
product: 242722
reactant: 242686
product: 242734
kinetic law: 242746
name: phytoene dehydrogenase
fast: false
reactant: 242698
type: Reaction
notes: GPR_ASSOCIATION: RSP_0271 GENE_LIST: RSP_0271; SUBSYSTEM: Carotenoid biosynthesis Equation: Phytofluene + NAD+ <=> zeta-Carotene + NADH + H+ Confidence Level: 4

249735
stoichiometry: 1.0
species: 564360
type: SpeciesReference

571176
value: 0.0
type: LocalParameter

564958
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Xanthine
type: Species

567625
product: 272531
kinetic law: 272579
type: Reaction
product: 272543
product: 272519
reactant: 272471
notes: GPR_ASSOCIATION: RSP_0796 GENE_LIST: RSP_0796; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Adenosyl cobyrinate a,c diamide + 4 L-Glutamine + 4 ATP + 4 H2O <=> Adenosyl cobyrinate hexaamide + 4 L-Glutamate + 4 Orthophosphate + 4 ADP + 3 H+ Confidence Level: 2
reactant: 272495
reactant: 272507
product: 272555
reactant: 272483
name: cobyric acid synthase
fast: false
product: 272567
reversible: true

265039
stoichiometry: 1.0
species: 564360
type: SpeciesReference

267914
stoichiometry: 1.0
species: 564445
type: SpeciesReference

571716
value: 0.0
type: LocalParameter

566462
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Methyl-2-oxopentanoate
type: Species

310440
stoichiometry: 1.0E-5
species: 564387
type: SpeciesReference

574137
value: 0.0
type: LocalParameter

566995
reactant: 242626
product: 242650
reactant: 242614
type: Reaction
name: farnesyl-diphosphate synthase
notes: GPR_ASSOCIATION: RSP_0265 or RSP_1135 GENE_LIST: RSP_0265; RSP_1135; SUBSYSTEM: Carotenoid biosynthesis Equation: trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate Confidence Level: 4
reversible: false
reactant: 242638
fast: false
product: 242662
kinetic law: 242674

571177
value: 0.0
type: LocalParameter

571024
value: 0.0
type: LocalParameter

309812
stoichiometry: 1.0
species: 564535
type: SpeciesReference

575199
value: 0.0
type: LocalParameter

567020
product: 243763
kinetic law: 243787
reactant: 243739
fast: false
notes: GPR_ASSOCIATION: RSP_0264 GENE_LIST: RSP_0264; SUBSYSTEM: Carotenoid biosynthesis Equation: 3,4-Dehydrorhodopin + S-Adenosyl-L-methionine <=> Anhydrorhodovibrin + S-Adenosyl-L-homocysteine Confidence Level: 3
type: Reaction
product: 243775
name: hydroxyneurosporene-O-methyltransferase
reactant: 243751
reversible: true

242589
stoichiometry: 1.0
species: 564910
type: SpeciesReference

570947
value: -1000.0
type: LocalParameter

571721
value: 0.0
type: LocalParameter

314254
stoichiometry: 1.0
species: 566799
type: SpeciesReference

284066
stoichiometry: 1.0
species: 564348
type: SpeciesReference

569972
value: 0.0
type: LocalParameter

566242
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3'-GMP
type: Species

238086
stoichiometry: 1.0
species: 565820
type: SpeciesReference

569369
value: 0.0
type: LocalParameter

567635
product: 273283
notes: GPR_ASSOCIATION: RSP_0289 GENE_LIST: RSP_0289; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: S-Adenosyl-L-methionine + Magnesium protoporphyrin <=> S-Adenosyl-L-homocysteine + Magnesium protoporphyrin monomethyl ester Confidence Level: 3
name: Mg-protoporphyrin IX methyl transferase
fast: false
type: Reaction
kinetic law: 273307
reversible: true
product: 273295
reactant: 273271
reactant: 273259

574143
value: 0.0
type: LocalParameter

270464
stoichiometry: 1.0
species: 564366
type: SpeciesReference

567849
reversible: false
product: 288005
reactant: 287932
name: ABC L-glutamine transporter
product: 287980
fast: false
notes: GPR_ASSOCIATION: (RSP_1747 and RSP_1748 and RSP_1749 and RSP_1750) or (RSP_0371 and RSP_0372 and RSP_0373 and RSP_0374) GENE_LIST: RSP_1747; RSP_1748; RSP_1749; RSP_1750; RSP_0371; RSP_0372; RSP_0373; RSP_0374; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + L-glutamine[p] <=> ADP + H+ + Orthophosphate + L-glutamine Confidence Level: 4
kinetic law: 288017
product: 287968
type: Reaction
reactant: 287944
product: 287992
reactant: 287956

570948
value: 1000.0
type: LocalParameter

571720
value: 0.0
type: LocalParameter

564952
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dUMP
type: Species

315527
stoichiometry: 1.0
species: 566843
type: SpeciesReference

572820
value: 0.0
type: LocalParameter

566243
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3'-CMP
type: Species

569971
value: 0.0
type: LocalParameter

567634
reactant: 273198
kinetic law: 273246
fast: false
notes: GPR_ASSOCIATION: RSP_1508 GENE_LIST: RSP_1508; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Protoporphyrinogen IX + 3 Oxygen <=> Protoporphyrin + 3 H2O2 Confidence Level: 2
reversible: false
type: Reaction
reactant: 273210
product: 273222
product: 273234

317652
stoichiometry: 1.0
species: 566848
type: SpeciesReference

567848
type: Reaction
kinetic law: 287920
fast: false
product: 287883
reactant: 287859
product: 287907
product: 287871
notes: GPR_ASSOCIATION: RSP_1747 and RSP_1748 and RSP_1749 and RSP_1750 GENE_LIST: RSP_1747; RSP_1748; RSP_1749; RSP_1750; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + L-aspartate[p] <=> ADP + H+ + Orthophosphate + L-aspartate Confidence Level: 4
reversible: false
reactant: 287847
name: ABC L-aspartate transporter
product: 287895
reactant: 287835

244184
stoichiometry: 4.0
species: 564535
type: SpeciesReference

264095
stoichiometry: 1.0
species: 564366
type: SpeciesReference

569250
value: 1000.0
type: LocalParameter

264335
stoichiometry: 1.0
species: 564354
type: SpeciesReference

570949
value: 0.0
type: LocalParameter

574290
value: 0.0
type: LocalParameter

566240
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3'-UMP
type: Species

306411
stoichiometry: 1.0
species: 564535
type: SpeciesReference

276912
stoichiometry: 1.0
species: 564369
type: SpeciesReference

567633
type: Reaction
reactant: 273137
product: 273173
notes: GPR_ASSOCIATION: RSP_0789 GENE_LIST: RSP_0789; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: N1-(5-Phospho-alpha-D-ribosyl)-5,6-dimethylbenzimidazole + H2O <=> alpha-Ribazole + Orthophosphate Confidence Level: 2
kinetic law: 273185
fast: false
product: 273161
reversible: false
reactant: 273149

249194
stoichiometry: 1.0
species: 566360
type: SpeciesReference

567847
reactant: 287738
product: 287775
fast: false
product: 287811
reversible: false
kinetic law: 287823
product: 287799
notes: GPR_ASSOCIATION: RSP_1747 and RSP_1748 and RSP_1749 and RSP_1750 GENE_LIST: RSP_1747; RSP_1748; RSP_1749; RSP_1750; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + L-glutamate[p] <=> ADP + H+ + Orthophosphate + L-glutamate Confidence Level: 4
reactant: 287762
reactant: 287750
name: ABC L-glutamate transporter
type: Reaction
product: 287787

571724
value: 0.0
type: LocalParameter

574145
value: 1000.0
type: LocalParameter

569251
value: 0.0
type: LocalParameter

571722
value: 1000.0
type: LocalParameter

269059
stoichiometry: 1.0
species: 565364
type: SpeciesReference

570210
value: 0.0
type: LocalParameter

575049
value: 0.0
type: LocalParameter

239317
stoichiometry: 1.0
species: 565376
type: SpeciesReference

300351
stoichiometry: 1.0
species: 564577
type: SpeciesReference

567632
kinetic law: 273125
product: 273088
fast: false
product: 273113
reactant: 273076
type: Reaction
product: 273101
reversible: true
notes: GPR_ASSOCIATION: RSP_3218 GENE_LIST: RSP_3218; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: 2 Cob(II)yrinate a,c diamide + Reduced FMN <=> 2 Cob(I)yrinate a,c diamide + FMN + H+ Confidence Level: 2
name: cob(II)yrinic acid a,c-diamide reductase
reactant: 273064

315055
stoichiometry: 1.0
species: 566828
type: SpeciesReference

299239
stoichiometry: 1.0
species: 564360
type: SpeciesReference

569973
value: 0.0
type: LocalParameter

299384
stoichiometry: 1.0
species: 565352
type: SpeciesReference

567846
reactant: 287689
reversible: true
type: Reaction
notes: GPR_ASSOCIATION: RSP_1786 and RSP_1788 GENE_LIST: RSP_1786; RSP_1788; SUBSYSTEM: Transport, inner membrane Equation: D-fructose[p] + Phosphoenolpyruvate <=> Fructose-1-phosphate + Pyruvate Confidence Level: 4
name: Fructose transport via PEP:Pyr PTS
product: 287713
product: 287701
fast: false
kinetic law: 287726
reactant: 287677

310774
stoichiometry: 0.562158734565962
species: 565382
type: SpeciesReference

271164
stoichiometry: 1.0
species: 565244
type: SpeciesReference

574144
value: -1000.0
type: LocalParameter

286105
stoichiometry: 1.0
species: 564559
type: SpeciesReference

249807
stoichiometry: 1.0
species: 564360
type: SpeciesReference

312094
stoichiometry: 1.0
species: 564535
type: SpeciesReference

572823
value: -1000.0
type: LocalParameter

299977
stoichiometry: 1.0
species: 565985
type: SpeciesReference

574292
value: -1000.0
type: LocalParameter

277733
stoichiometry: 1.0
species: 564369
type: SpeciesReference

569252
value: 0.0
type: LocalParameter

570211
value: 1000.0
type: LocalParameter

278976
stoichiometry: 1.0
species: 564408
type: SpeciesReference

237130
stoichiometry: 2.0
species: 564345
type: SpeciesReference

575193
value: 0.0
type: LocalParameter

567024
type: Reaction
notes: GPR_ASSOCIATION: RSP_0272 GENE_LIST: RSP_0272; SUBSYSTEM: Carotenoid biosynthesis Equation: Hydroxyspheroidene + 2 Reduced ferredoxin + 2 Oxygen + 4 H+ <=> Hydroxyspheroidenone + 2 Oxidized ferredoxin + 3 H2O Confidence Level: 3
reactant: 243967
product: 244028
product: 244016
reactant: 243992
reactant: 243955
reactant: 243980
fast: false
kinetic law: 244040
name: spheroidene monooxygenase
product: 244004
reversible: false

569365
value: -1000.0
type: LocalParameter

298138
stoichiometry: 1.0
species: 564345
type: SpeciesReference

567845
reactant: 287629
fast: false
reactant: 287605
reactant: 287617
product: 287653
kinetic law: 287665
name: thiamine-phosphate pyrophosphorylase
product: 287641
reversible: true
notes: GPR_ASSOCIATION: RSP_0648 or RSP_3828 GENE_LIST: RSP_0648; RSP_3828; SUBSYSTEM: Thiamine metabolism Equation: 2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-Methyl-5-(2-phosphoethyl)-thiazole + 2 H+ <=> Diphosphate + Thiamin phosphate Confidence Level: 2
type: Reaction

258805
stoichiometry: 1.0
species: 564351
type: SpeciesReference

572824
value: 1000.0
type: LocalParameter

295759
stoichiometry: 1.0
species: 566002
type: SpeciesReference

567631
product: 273015
notes: GPR_ASSOCIATION: RSP_2427 GENE_LIST: RSP_2427; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Adenosine-GDP-cobinamide + alpha-Ribazole <=> Cobamide coenzyme + GMP + H+ Confidence Level: 2
type: Reaction
kinetic law: 273052
product: 273027
product: 273039
reactant: 273003
name: cobalamin-5-phosphate synthase
fast: false
reactant: 272991
reversible: true

566246
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: H2O[e]
type: Species

571029
value: 0.0
type: LocalParameter

275403
stoichiometry: 1.0
species: 566505
type: SpeciesReference

237893
stoichiometry: 1.0
species: 564589
type: SpeciesReference

570212
value: 0.0
type: LocalParameter

263563
stoichiometry: 16.0
species: 564369
type: SpeciesReference

574291
value: 0.0
type: LocalParameter

575047
value: 1000.0
type: LocalParameter

569253
value: -1000.0
type: LocalParameter

567844
name: putative hydoxyethylthiazole kinase
reversible: true
type: Reaction
reactant: 287545
product: 287569
kinetic law: 287593
product: 287557
product: 287581
reactant: 287533
fast: false
notes: GPR_ASSOCIATION: RSP_0649 GENE_LIST: RSP_0649; SUBSYSTEM: Thiamine metabolism Equation: ATP + 5-(2-Hydroxyethyl)-4-methylthiazole <=> ADP + 4-Methyl-5-(2-phosphoethyl)-thiazole + H+ Confidence Level: 2

575192
value: 0.0
type: LocalParameter

569366
value: 1000.0
type: LocalParameter

567630
reversible: true
notes: GPR_ASSOCIATION: RSP_0602 GENE_LIST: RSP_0602; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Adenosyl cobinamide phosphate + GTP + H+ <=> Adenosine-GDP-cobinamide + Diphosphate Confidence Level: 3
reactant: 272942
type: Reaction
reactant: 272917
product: 272954
kinetic law: 272978
name: adenosylcobinamide kinase
product: 272966
reactant: 272929
fast: false

566247
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: H2O[e]
type: Species

274372
stoichiometry: 1.0
species: 564601
type: SpeciesReference

571181
value: 0.0
type: LocalParameter

569254
value: 1000.0
type: LocalParameter

575046
value: 0.0
type: LocalParameter

567022
product: 243835
reversible: true
kinetic law: 243847
name: hydroxyneurosporene-O-methyltransferase
type: Reaction
product: 243823
fast: false
reactant: 243811
notes: GPR_ASSOCIATION: RSP_0264 GENE_LIST: RSP_0264; SUBSYSTEM: Carotenoid biosynthesis Equation: Rhodopin + S-Adenosyl-L-methionine <=> 3,4-Dihydroanhydrorhodovibrin + S-Adenosyl-L-homocysteine Confidence Level: 3
reactant: 243799

574294
value: 1000.0
type: LocalParameter

574141
value: 0.0
type: LocalParameter

566139
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Lysine[e]
type: Species

256664
stoichiometry: 1.0
species: 564544
type: SpeciesReference

568401
value: 1000.0
type: LocalParameter

570500
value: 1000.0
type: LocalParameter

566244
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: H2O[p]
type: Species

285356
stoichiometry: 1.0
species: 564589
type: SpeciesReference

567843
type: Reaction
reversible: true
reactant: 287461
reactant: 287473
name: phosphomethylpyrimidine kinase
product: 287485
fast: false
kinetic law: 287521
notes: GPR_ASSOCIATION: RSP_0647 GENE_LIST: RSP_0647; SUBSYSTEM: Thiamine metabolism Equation: ATP + 4-Amino-5-hydroxymethyl-2-methylpyrimidine <=> ADP + 4-Amino-2-methyl-5-phosphomethylpyrimidine + H+ Confidence Level: 2
product: 287497
product: 287509

569970
value: 1000.0
type: LocalParameter

298731
stoichiometry: 1.0
species: 564375
type: SpeciesReference

572822
value: 0.0
type: LocalParameter

294233
stoichiometry: 1.0
species: 566053
type: SpeciesReference

249953
stoichiometry: 1.0
species: 564360
type: SpeciesReference

570214
value: 0.0
type: LocalParameter

575045
value: 0.0
type: LocalParameter

569368
value: 0.0
type: LocalParameter

569255
value: 0.0
type: LocalParameter

567023
reactant: 243895
fast: false
product: 243931
reversible: false
product: 243919
reactant: 243859
reactant: 243883
type: Reaction
name: spheroidene monooxygenase
product: 243907
kinetic law: 243943
notes: GPR_ASSOCIATION: RSP_0272 GENE_LIST: RSP_0272; SUBSYSTEM: Carotenoid biosynthesis Equation: Spheroidene + 2 Reduced ferredoxin + 2 Oxygen + 4 H+ <=> Spheroidenone + 2 Oxidized ferredoxin + 3 H2O Confidence Level: 3
reactant: 243871

568400
value: -1000.0
type: LocalParameter

574140
value: 1000.0
type: LocalParameter

235732
stoichiometry: 1.0
species: 564345
type: SpeciesReference

575190
value: 1000.0
type: LocalParameter

570501
value: 0.0
type: LocalParameter

567842
product: 287437
type: Reaction
reactant: 287401
fast: false
reversible: true
reactant: 287413
name: phosphomethylpyrimidine kinase
product: 287425
notes: GPR_ASSOCIATION: RSP_0647 GENE_LIST: RSP_0647; SUBSYSTEM: Thiamine metabolism Equation: ATP + 4-Amino-2-methyl-5-phosphomethylpyrimidine <=> ADP + 2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + H+ Confidence Level: 2
kinetic law: 287449

295602
stoichiometry: 1.0
species: 564357
type: SpeciesReference

302017
stoichiometry: 1.0
species: 564345
type: SpeciesReference

303598
stoichiometry: 1.0
species: 564345
type: SpeciesReference

567522
kinetic law: 266139
product: 266126
product: 266114
reactant: 266101
notes: GPR_ASSOCIATION: RSP_0773 GENE_LIST: RSP_0773; SUBSYSTEM: Pentose and glucuronate interconversions Equation: D-Mannonate <=> 2-Dehydro-3-deoxy-D-gluconate + H2O Confidence Level: 2
fast: false
reversible: false
name: mannonate dehydratase
type: Reaction

313326
stoichiometry: 1.0
species: 566793
type: SpeciesReference

568403
value: 0.0
type: LocalParameter

241216
stoichiometry: 1.0
species: 565135
type: SpeciesReference

569256
value: 0.0
type: LocalParameter

567736
product: 280202
type: Reaction
notes: GPR_ASSOCIATION: RSP_1222 GENE_LIST: RSP_1222; SUBSYSTEM: Purine metabolism Equation: ATP + H2O <=> ADP + Orthophosphate + H+ Confidence Level: 2
name: putative deoxyribonucleotide triphosphate pyrophosphatase
reversible: false
product: 280215
reactant: 280178
kinetic law: 280227
product: 280190
fast: false
reactant: 280166

566036
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: putrescine[e]
type: Species

263673
stoichiometry: 1.0
species: 564427
type: SpeciesReference

569361
value: -1000.0
type: LocalParameter

570368
value: 1000.0
type: LocalParameter

570215
value: 0.0
type: LocalParameter

566775
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Photon[e]
type: Species

305325
stoichiometry: 1.0
species: 564345
type: SpeciesReference

294389
stoichiometry: 1.0
species: 566068
type: SpeciesReference

252456
stoichiometry: 1.0
species: 564351
type: SpeciesReference

566138
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Lysine[e]
type: Species

567521
kinetic law: 266089
product: 266077
product: 266065
reactant: 266053
notes: GPR_ASSOCIATION: RSP_1610 GENE_LIST: RSP_1610; SUBSYSTEM: Pentose and glucuronate interconversions Equation: D-Altronate <=> 2-Dehydro-3-deoxy-D-gluconate + H2O Confidence Level: 2
fast: false
reversible: false
name: altronate hydrolase
type: Reaction

570217
value: 0.0
type: LocalParameter

568402
value: 0.0
type: LocalParameter

567735
product: 280118
type: Reaction
product: 280142
fast: false
reactant: 280094
product: 280130
notes: GPR_ASSOCIATION: RSP_1222 GENE_LIST: RSP_1222; SUBSYSTEM: Thiamine metabolism Equation: Thiamin diphosphate + H2O <=> Thiamin monophosphate + Orthophosphate + 2 H+ Confidence Level: 2
reactant: 280106
name: putative deoxyribonucleotide triphosphate pyrophosphatase
reversible: false
kinetic law: 280154

574295
value: 0.0
type: LocalParameter

566037
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: putrescine[e]
type: Species

569257
value: -1000.0
type: LocalParameter

569362
value: 1000.0
type: LocalParameter

274480
stoichiometry: 1.0
species: 564583
type: SpeciesReference

575043
value: 0.0
type: LocalParameter

570369
value: 0.0
type: LocalParameter

570216
value: 1000.0
type: LocalParameter

306569
stoichiometry: 1.0
species: 564535
type: SpeciesReference

568405
value: 1000.0
type: LocalParameter

566248
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: H[p]
type: Species

566135
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Histidine[e]
type: Species

252348
stoichiometry: 1.0
species: 565466
type: SpeciesReference

300796
stoichiometry: 1.0
species: 566512
type: SpeciesReference

569258
value: 1000.0
type: LocalParameter

280263
stoichiometry: 1.0
species: 565868
type: SpeciesReference

567734
notes: GPR_ASSOCIATION: RSP_1736 or RSP_0578 GENE_LIST: RSP_1736; RSP_0578; SUBSYSTEM: Purine metabolism Equation: ATP + dAMP <=> ADP + dADP Confidence Level: 2
kinetic law: 280082
reactant: 280034
product: 280058
type: Reaction
product: 280070
reactant: 280046
fast: false
reversible: true
name: adenylate kinase

278421
stoichiometry: 1.0
species: 564439
type: SpeciesReference

235624
stoichiometry: 1.0
species: 564381
type: SpeciesReference

566034
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: putrescine[p]
type: Species

574298
value: 0.0
type: LocalParameter

570218
value: 0.0
type: LocalParameter

575042
value: 1000.0
type: LocalParameter

566773
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Nicotinate[e]
type: Species

257718
stoichiometry: 1.0
species: 564436
type: SpeciesReference

569363
value: 0.0
type: LocalParameter

308897
stoichiometry: 1.0
species: 566738
type: SpeciesReference

566136
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Lysine[p]
type: Species

570610
value: 0.0
type: LocalParameter

567733
kinetic law: 280022
product: 280010
reactant: 279998
reactant: 279986
notes: GPR_ASSOCIATION: RSP_1736 or RSP_0578 GENE_LIST: RSP_1736; RSP_0578; SUBSYSTEM: Purine metabolism Equation: ATP + AMP <=> 2 ADP Confidence Level: 2
fast: false
reversible: false
name: adenylate kinase
type: Reaction

570941
value: 0.0
type: LocalParameter

568404
value: 0.0
type: LocalParameter

574297
value: 0.0
type: LocalParameter

570219
value: -1000.0
type: LocalParameter

569259
value: 0.0
type: LocalParameter

566774
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Photon[e]
type: Species

569364
value: 0.0
type: LocalParameter

564841
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Gluconicacid
type: Species

286213
stoichiometry: 1.0
species: 564865
type: SpeciesReference

567526
kinetic law: 266320
product: 266308
reactant: 266296
notes: GPR_ASSOCIATION: RSP_1176 GENE_LIST: RSP_1176; SUBSYSTEM: Pentose and glucuronate interconversions Equation: D-Glucose <=> D-Fructose Confidence Level: 2
fast: false
reversible: true
name: xylose isomerase
type: Reaction

575040
value: -1000.0
type: LocalParameter

570942
value: -1000.0
type: LocalParameter

266537
stoichiometry: 1.0
species: 566489
type: SpeciesReference

273973
stoichiometry: 2.0
species: 564345
type: SpeciesReference

573918
value: 0.0
type: LocalParameter

569976
value: 0.0
type: LocalParameter

568407
value: 0.0
type: LocalParameter

315635
stoichiometry: 1.0
species: 564535
type: SpeciesReference

317760
stoichiometry: 1.0
species: 566848
type: SpeciesReference

566549
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Ornithine[e]
type: Species

570364
value: 0.0
type: LocalParameter

566771
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Nicotinate[e]
type: Species

570943
value: 1000.0
type: LocalParameter

242698
stoichiometry: 1.0
species: 564351
type: SpeciesReference

567739
product: 280431
type: Reaction
product: 280407
reversible: true
fast: false
product: 280419
reactant: 280383
name: thioredoxin reductase
kinetic law: 280443
reactant: 280395
notes: GPR_ASSOCIATION: RSP_1576 GENE_LIST: RSP_1576; SUBSYSTEM: Pyrimidine metabolism Equation: Thioredoxin + NADP+ <=> Thioredoxin disulfide + NADPH + H+ Confidence Level: 4

574299
value: 1000.0
type: LocalParameter

567525
product: 266272
notes: GPR_ASSOCIATION: RSP_1177 GENE_LIST: RSP_1177; SUBSYSTEM: Pentose and glucuronate interconversions Equation: ATP + D-Xylulose <=> ADP + D-Xylulose 5-phosphate + H+ Confidence Level: 2
reactant: 266236
fast: false
reactant: 266224
kinetic law: 266284
reversible: true
product: 266248
type: Reaction
product: 266260
name: xylulose kinase

259578
stoichiometry: 1.0
species: 565777
type: SpeciesReference

573917
value: 0.0
type: LocalParameter

566134
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Histidine[e]
type: Species

569975
value: 1000.0
type: LocalParameter

568406
value: 0.0
type: LocalParameter

256362
stoichiometry: 1.0
species: 565003
type: SpeciesReference

570944
value: 0.0
type: LocalParameter

566038
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: spermidine[p]
type: Species

310666
stoichiometry: 53.615732887
species: 564535
type: SpeciesReference

567738
reversible: false
kinetic law: 280371
fast: false
product: 280359
reactant: 280299
type: Reaction
product: 280335
reactant: 280311
notes: GPR_ASSOCIATION: RSP_1552 GENE_LIST: RSP_1552; SUBSYSTEM: Purine metabolism Equation: (-)-Ureidoglycolate + H2O + 2 H+ <=> Glyoxylate + 2 NH3 + CO2 Confidence Level: 2
reactant: 280323
product: 280347
name: ureidoglycolate hydrolase

569978
value: 0.0
type: LocalParameter

573916
value: 0.0
type: LocalParameter

568409
value: 1000.0
type: LocalParameter

318593
stoichiometry: 1.0
species: 564387
type: SpeciesReference

566131
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Arginine[e]
type: Species

570366
value: 0.0
type: LocalParameter

564844
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hypoxanthine
type: Species

245272
stoichiometry: 1.0
species: 566413
type: SpeciesReference

567737
reactant: 280239
product: 280263
product: 280275
fast: false
kinetic law: 280287
type: Reaction
name: transthyretin-like protein
reversible: false
notes: GPR_ASSOCIATION: RSP_1555 GENE_LIST: RSP_1555; SUBSYSTEM: Purine metabolism Equation: 5-Hydroxyisourate + H2O <=> 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate + H+ Confidence Level: 2
reactant: 280251

267227
stoichiometry: 1.0
species: 564366
type: SpeciesReference

568408
value: -1000.0
type: LocalParameter

567523
reactant: 266164
name: D-mannonate oxidoreductase
product: 266200
kinetic law: 266212
notes: GPR_ASSOCIATION: RSP_0480 GENE_LIST: RSP_0480; SUBSYSTEM: Pentose and glucuronate interconversions Equation: D-Mannonate + NAD+ <=> D-Fructuronate + NADH + H+ Confidence Level: 2
product: 266188
reactant: 266151
type: Reaction
fast: false
reversible: true
product: 266176

569977
value: 0.0
type: LocalParameter

566132
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Histidine[p]
type: Species

256893
stoichiometry: 1.0
species: 564411
type: SpeciesReference

291571
stoichiometry: 1.0
species: 564369
type: SpeciesReference

260099
stoichiometry: 1.0
species: 565945
type: SpeciesReference

314146
stoichiometry: 1.0
species: 564535
type: SpeciesReference

566548
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Ornithine[p]
type: Species

262962
stoichiometry: 1.0
species: 564345
type: SpeciesReference

570946
value: 0.0
type: LocalParameter

570367
value: -1000.0
type: LocalParameter

569360
value: 0.0
type: LocalParameter

566770
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Nicotinate[p]
type: Species

573934
value: 0.0
type: LocalParameter

289767
stoichiometry: 1.0
species: 564369
type: SpeciesReference

566140
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Cysteine[p]
type: Species

294596
stoichiometry: 1.0
species: 566096
type: SpeciesReference

571168
value: 1000.0
type: LocalParameter

566568
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Benzoate[p]
type: Species

570375
value: 0.0
type: LocalParameter

564838
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-Lactate
type: Species

567503
reversible: true
fast: false
type: Reaction
kinetic law: 265256
notes: GPR_ASSOCIATION: RSP_2533 GENE_LIST: RSP_2533; SUBSYSTEM: Pantothenate and CoA biosynthesis Equation: ATP + Pantetheine <=> ADP + Pantetheine 4'-phosphate + H+ Confidence Level: 2
product: 265232
name: pantothenate kinase
reactant: 265208
product: 265244
product: 265220
reactant: 265196

265726
stoichiometry: 1.0
species: 565601
type: SpeciesReference

299675
stoichiometry: 1.0
species: 566223
type: SpeciesReference

574067
value: 0.0
type: LocalParameter

566366
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Propenoyl-CoA
type: Species

573935
value: 0.0
type: LocalParameter

316264
stoichiometry: 5.9E-5
species: 564372
type: SpeciesReference

571169
value: 0.0
type: LocalParameter

570618
value: 0.0
type: LocalParameter

570374
value: 0.0
type: LocalParameter

288224
stoichiometry: 1.0
species: 564345
type: SpeciesReference

248456
stoichiometry: 1.0
species: 566440
type: SpeciesReference

281639
stoichiometry: 1.0
species: 564907
type: SpeciesReference

265136
stoichiometry: 1.0
species: 564396
type: SpeciesReference

314692
stoichiometry: 1.0
species: 564535
type: SpeciesReference

574068
value: 1000.0
type: LocalParameter

271092
stoichiometry: 1.0
species: 565949
type: SpeciesReference

566478
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-3-Hydroxy-3-methyl-2-oxopentanoate
type: Species

573936
value: 1000.0
type: LocalParameter

286951
stoichiometry: 1.0
species: 565943
type: SpeciesReference

571166
value: 0.0
type: LocalParameter

244730
stoichiometry: 1.0
species: 564393
type: SpeciesReference

570373
value: 1000.0
type: LocalParameter

570617
value: 1000.0
type: LocalParameter

564835
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Riboflavin
type: Species

274274
stoichiometry: 1.0
species: 565844
type: SpeciesReference

567505
fast: false
reversible: true
type: Reaction
kinetic law: 265328
notes: GPR_ASSOCIATION: RSP_2533 GENE_LIST: RSP_2533; SUBSYSTEM: Pantothenate and CoA biosynthesis Equation: ATP + Pantothenate <=> ADP + D-4'-Phosphopantothenate + H+ Confidence Level: 2
product: 265304
reactant: 265280
product: 265316
name: pantothenate kinase
reactant: 265268
product: 265292

574279
value: 0.0
type: LocalParameter

566142
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Cysteine[e]
type: Species

566368
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Methylprop-2-enoyl-CoA
type: Species

566569
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Benzoate[e]
type: Species

570372
value: -1000.0
type: LocalParameter

571167
value: -1000.0
type: LocalParameter

264494
stoichiometry: 4.0
species: 566248
type: SpeciesReference

570616
value: 0.0
type: LocalParameter

574066
value: 0.0
type: LocalParameter

284657
stoichiometry: 1.0
species: 564835
type: SpeciesReference

567506
kinetic law: 265400
product: 265388
fast: false
reversible: false
product: 265364
notes: GPR_ASSOCIATION: RSP_2533 GENE_LIST: RSP_2533; SUBSYSTEM: Pantothenate and CoA biosynthesis Equation: ATP + N-((R)-Pantothenoyl)-L-cysteine <=> ADP + (R)-4'-Phosphopantothenoyl-L-cysteine + 2 H+ Confidence Level: 2
product: 265376
reactant: 265352
reactant: 265340
type: Reaction
name: pantothenate kinase

573938
value: 0.0
type: LocalParameter

566367
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Methylpropanoyl-CoA
type: Species

566564
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Cytosine[p]
type: Species

566778
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Dimethylsulfide[p]
type: Species

570615
value: 0.0
type: LocalParameter

288524
stoichiometry: 1.0
species: 566052
type: SpeciesReference

282498
stoichiometry: 1.0
species: 564345
type: SpeciesReference

570371
value: 0.0
type: LocalParameter

248021
stoichiometry: 1.0
species: 566340
type: SpeciesReference

566362
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans-Oct-2-enoyl-CoA
type: Species

303019
stoichiometry: 1.0
species: 566578
type: SpeciesReference

307063
stoichiometry: 1.0
species: 564348
type: SpeciesReference

567507
type: Reaction
product: 265449
notes: GPR_ASSOCIATION: RSP_0599 GENE_LIST: RSP_0599; SUBSYSTEM: Pantothenate and CoA biosynthesis Equation: (R)-4'-Phosphopantothenoyl-L-cysteine + H+ <=> Pantetheine 4'-phosphate + CO2 Confidence Level: 2
reactant: 265424
fast: false
name: bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
reversible: false
product: 265436
kinetic law: 265461
reactant: 265412

237277
stoichiometry: 1.0
species: 564808
type: SpeciesReference

253815
stoichiometry: 1.0
species: 565849
type: SpeciesReference

573931
value: 1000.0
type: LocalParameter

565093
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Sedoheptulose1,7-bisphosphate
type: Species

566777
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Dimethylsulfoxide[p]
type: Species

281978
stoichiometry: 1.0
species: 565972
type: SpeciesReference

567730
product: 279841
name: adenine deaminase
reactant: 279792
reversible: false
type: Reaction
product: 279828
reactant: 279804
fast: false
notes: GPR_ASSOCIATION: RSP_0985 GENE_LIST: RSP_0985; SUBSYSTEM: Purine metabolism Equation: Adenine + H2O + H+ <=> Hypoxanthine + NH3 Confidence Level: 2
reactant: 279816
kinetic law: 279853

285792
stoichiometry: 1.0
species: 564375
type: SpeciesReference

236922
stoichiometry: 1.0
species: 564535
type: SpeciesReference

262829
stoichiometry: 1.0
species: 564378
type: SpeciesReference

248674
stoichiometry: 1.0
species: 565895
type: SpeciesReference

302656
stoichiometry: 1.0
species: 566564
type: SpeciesReference

311148
stoichiometry: 1.0
species: 564418
type: SpeciesReference

258964
stoichiometry: 1.0
species: 564402
type: SpeciesReference

317217
stoichiometry: 1.0
species: 565496
type: SpeciesReference

299529
stoichiometry: 1.0
species: 564357
type: SpeciesReference

280904
stoichiometry: 1.0
species: 564345
type: SpeciesReference

264770
stoichiometry: 1.0
species: 564366
type: SpeciesReference

265872
stoichiometry: 1.0
species: 564769
type: SpeciesReference

566566
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Cytosine[e]
type: Species

243955
stoichiometry: 1.0
species: 566398
type: SpeciesReference

565090
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: LL-2,6-Diaminoheptanedioate
type: Species

256156
stoichiometry: 1.0
species: 564979
type: SpeciesReference

573932
value: 0.0
type: LocalParameter

574497
value: 1000.0
type: LocalParameter

570613
value: 0.0
type: LocalParameter

273816
stoichiometry: 1.0
species: 565986
type: SpeciesReference

570612
value: 1000.0
type: LocalParameter

566364
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Methylbut-2-enoyl-CoA
type: Species

267398
stoichiometry: 1.0
species: 564616
type: SpeciesReference

251515
stoichiometry: 1.0
species: 564372
type: SpeciesReference

302716
stoichiometry: 1.0
species: 564535
type: SpeciesReference

567731
notes: GPR_ASSOCIATION: RSP_0709 GENE_LIST: RSP_0709; SUBSYSTEM: Purine metabolism Equation: 2',3'-Cyclic AMP + H2O <=> 3'-AMP + H+ Confidence Level: 2
reversible: true
type: Reaction
reactant: 279877
reactant: 279865
product: 279901
kinetic law: 279913
name: 2,3-cyclic-nucleotide 2-phosphodiesterase
fast: false
product: 279889

241288
stoichiometry: 1.0
species: 564378
type: SpeciesReference

567509
type: Reaction
product: 265546
kinetic law: 265558
reactant: 265474
fast: false
product: 265510
notes: GPR_ASSOCIATION: RSP_0599 GENE_LIST: RSP_0599; SUBSYSTEM: Pantothenate and CoA biosynthesis Equation: ATP + D-4'-Phosphopantothenate + L-Cysteine <=> AMP + Diphosphate + (R)-4'-Phosphopantothenoyl-L-cystein +H+ Confidence Level: 2
product: 265522
name: bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
reversible: true
reactant: 265486
reactant: 265498
product: 265534

280034
stoichiometry: 1.0
species: 564348
type: SpeciesReference

304357
stoichiometry: 1.0
species: 566618
type: SpeciesReference

566021
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: sulfate[p]
type: Species

566565
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Cytosine[e]
type: Species

293097
stoichiometry: 1.0
species: 564366
type: SpeciesReference

282907
stoichiometry: 1.0
species: 564949
type: SpeciesReference

566779
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Dimethylsulfoxide[e]
type: Species

574498
value: 0.0
type: LocalParameter

273743
stoichiometry: 1.0
species: 564814
type: SpeciesReference

286743
stoichiometry: 1.0
species: 565853
type: SpeciesReference

570611
value: -1000.0
type: LocalParameter

566363
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-2-Methylbutanoyl-CoA
type: Species

567732
name: 2,3-cyclic-nucleotide 2-phosphodiesterase
reactant: 279925
type: Reaction
kinetic law: 279973
reversible: true
fast: false
notes: GPR_ASSOCIATION: RSP_0709 GENE_LIST: RSP_0709; SUBSYSTEM: Purine metabolism Equation: 2',3'-Cyclic GMP + H2O <=> Guanosine 3'-phosphate + H+ Confidence Level: 2
product: 279949
product: 279961
reactant: 279937

279925
stoichiometry: 1.0
species: 566454
type: SpeciesReference

272663
stoichiometry: 1.0
species: 564535
type: SpeciesReference

567039
kinetic law: 244814
reversible: true
product: 244802
name: S-adenosyl-L-homocysteine hydrolase
reactant: 244766
product: 244790
reactant: 244778
type: Reaction
notes: GPR_ASSOCIATION: RSP_1514 GENE_LIST: RSP_1514; SUBSYSTEM: Cysteine and methionine metabolism Equation: S-Adenosyl-L-homocysteine + H2O <=> Adenosine + L-Homocysteine Confidence Level: 3
fast: false

567616
kinetic law: 271794
notes: GPR_ASSOCIATION: RSP_2821 GENE_LIST: RSP_2821; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: S-Adenosyl-L-methionine + Precorrin 4 <=> S-Adenosyl-L-homocysteine + Precorrin 5 Confidence Level: 2
fast: false
reactant: 271758
reactant: 271746
name: precorrin-4 C11-methyltransferase
product: 271770
type: Reaction
reversible: true
product: 271782

307172
stoichiometry: 1.0
species: 566698
type: SpeciesReference

271370
stoichiometry: 1.0
species: 564514
type: SpeciesReference

570506
value: 0.0
type: LocalParameter

565096
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: gamma-L-Glutamyl-L-cysteine
type: Species

566988
product: 242323
notes: GPR_ASSOCIATION: (RSP_1282 and RSP_1281) or RSP_3271 GENE_LIST: RSP_1282; RSP_1281; RSP_3271; SUBSYSTEM: Carbon fixation in photosynthetic organisms Equation: D-Ribulose 1,5-bisphosphate + Oxygen <=> 3-Phospho-D-glycerate + 2-Phosphoglycolate Confidence Level: 4
reversible: false
product: 242336
fast: false
name: ribulose bisophosphate carboxylase
reactant: 242311
type: Reaction
kinetic law: 242360
reactant: 242298
product: 242348

566560
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Uracil[p]
type: Species

567038
product: 244730
fast: false
product: 244718
product: 244742
reactant: 244694
reactant: 244670
name: S-adenosylmethionine synthetase
kinetic law: 244754
type: Reaction
product: 244706
notes: GPR_ASSOCIATION: RSP_3595 GENE_LIST: RSP_3595; SUBSYSTEM: Cysteine and methionine metabolism Equation: ATP + L-Methionine + H2O <=> Orthophosphate + Diphosphate + S-Adenosyl-L-methionine + H+ Confidence Level: 3
reactant: 244682
reversible: false

567617
name: precorrin 6A synthase
reactant: 271830
reactant: 271806
notes: GPR_ASSOCIATION: RSP_2819 GENE_LIST: RSP_2819; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Precorrin 6X + Acetate + S-Adenosyl-L-homocysteine + H+ <=> Precorrin 5 + S-Adenosyl-L-methionine + H2O Confidence Level: 2
fast: false
product: 271879
kinetic law: 271891
reactant: 271818
product: 271855
reactant: 271842
product: 271867
reversible: true
type: Reaction

574129
value: 1000.0
type: LocalParameter

572802
value: 1000.0
type: LocalParameter

566470
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-2,3-Dihydroxy-3-methylpentanoate
type: Species

571016
value: 0.0
type: LocalParameter

570505
value: 1000.0
type: LocalParameter

572801
value: -1000.0
type: LocalParameter

566987
product: 242250
notes: GPR_ASSOCIATION: RSP_1284 or RSP_3267 GENE_LIST: RSP_1284; RSP_3267; SUBSYSTEM: Carbon fixation in photosynthetic organisms Equation: ATP + D-Ribulose 5-phosphate <=> ADP + D-Ribulose 1,5-bisphosphate Confidence Level: 4
name: phosphoribulokinase
reactant: 242238
product: 242274
reversible: true
reactant: 242226
type: Reaction
fast: false
kinetic law: 242286
product: 242262

574060
value: 0.0
type: LocalParameter

571161
value: 0.0
type: LocalParameter

274033
stoichiometry: 1.0
species: 564535
type: SpeciesReference

277057
stoichiometry: 1.0
species: 565087
type: SpeciesReference

567618
reactant: 271915
kinetic law: 271963
reversible: true
product: 271927
product: 271939
name: cobalt-precorrin-6x reductase
product: 271951
fast: false
type: Reaction
reactant: 271903
notes: GPR_ASSOCIATION: RSP_2825 GENE_LIST: RSP_2825; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Precorrin 6Y + NADP+ <=> Precorrin 6X + NADPH + 3 H+ Confidence Level: 2

304248
stoichiometry: 1.0
species: 566613
type: SpeciesReference

289609
stoichiometry: 1.0
species: 564348
type: SpeciesReference

564949
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dTMP
type: Species

571729
value: 0.0
type: LocalParameter

574126
value: 0.0
type: LocalParameter

566473
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Mannose[e]
type: Species

248782
stoichiometry: 1.0
species: 564375
type: SpeciesReference

572805
value: 0.0
type: LocalParameter

567840
reactant: 287255
reversible: false
type: Reaction
notes: GPR_ASSOCIATION: RSP_2707 GENE_LIST: RSP_2707; SUBSYSTEM: Terpenoid backbone biosynthesis Equation: trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate + H+ <=> trans,trans,cis-Geranylgeranyl diphosphate + Diphosphate Confidence Level: 2
kinetic law: 287315
product: 287303
fast: false
reactant: 287267
name: undecaprenyl pyrophosphate synthetase
reactant: 287279
product: 287291

571013
value: 1000.0
type: LocalParameter

253707
stoichiometry: 1.0
species: 564586
type: SpeciesReference

285272
stoichiometry: 1.0
species: 565036
type: SpeciesReference

276098
stoichiometry: 1.0
species: 565676
type: SpeciesReference

316374
stoichiometry: 5.9E-5
species: 564390
type: SpeciesReference

570504
value: -1000.0
type: LocalParameter

566562
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Uracil[e]
type: Species

295541
stoichiometry: 1.0
species: 566473
type: SpeciesReference

567619
reactant: 271975
product: 271999
product: 272023
kinetic law: 272047
notes: GPR_ASSOCIATION: RSP_2823 GENE_LIST: RSP_2823; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: 2 S-Adenosyl-L-methionine + Precorrin 6Y <=> 2 S-Adenosyl-L-homocysteine + Precorrin 8X + CO2 + H+ Confidence Level: 2
product: 272035
fast: false
product: 272011
name: putative precorrin-6y C5,15-methyltransferase
type: Reaction
reactant: 271987
reversible: true

253016
stoichiometry: 1.0
species: 564535
type: SpeciesReference

316843
stoichiometry: 1.0
species: 566846
type: SpeciesReference

574127
value: 0.0
type: LocalParameter

566472
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Mannose[p]
type: Species

267240
stoichiometry: 1.0
species: 564616
type: SpeciesReference

572804
value: 0.0
type: LocalParameter

567841
product: 287364
reactant: 287327
reversible: false
name: undecaprenyl pyrophosphate synthetase
kinetic law: 287389
product: 287376
reactant: 287339
fast: false
product: 287351
type: Reaction
notes: GPR_ASSOCIATION: RSP_2707 GENE_LIST: RSP_2707; SUBSYSTEM: Terpenoid backbone biosynthesis Equation: trans,trans,cis-Geranylgeranyl diphosphate + 7 Isopentenyl diphosphate <=> di-trans,poly-cis-Undecaprenyl diphosphate + 7 Diphosphate + H+ Confidence Level: 2

571014
value: 0.0
type: LocalParameter

570503
value: 0.0
type: LocalParameter

566561
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Uracil[e]
type: Species

285585
stoichiometry: 1.0
species: 564360
type: SpeciesReference

567612
kinetic law: 271528
product: 271515
product: 271502
reactant: 271490
notes: GPR_ASSOCIATION: s0001 GENE_LIST: SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Hydroxymethylbilane <=> Uroporphyrinogen I + H2O Confidence Level: 2
fast: false
reversible: false
type: Reaction

574063
value: 1000.0
type: LocalParameter

571727
value: 1000.0
type: LocalParameter

571164
value: 0.0
type: LocalParameter

267926
stoichiometry: 1.0
species: 564366
type: SpeciesReference

571011
value: 0.0
type: LocalParameter

564946
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dTDP
type: Species

249747
stoichiometry: 1.0
species: 566422
type: SpeciesReference

566984
product: 242130
notes: GPR_ASSOCIATION: RSP_2532 GENE_LIST: RSP_2532; SUBSYSTEM: Biotin metabolism Equation: biotinyl-5'-AMP + Apo-[carboxylase] <=> AMP + Holo-[carboxylase] + H+ Confidence Level: 2
product: 242117
reversible: true
product: 242104
reactant: 242091
name: biotin protein ligase
kinetic law: 242142
type: Reaction
fast: false
reactant: 242078

256458
stoichiometry: 1.0
species: 564436
type: SpeciesReference

241396
stoichiometry: 1.0
species: 564408
type: SpeciesReference

566474
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Mannose[e]
type: Species

574125
value: 0.0
type: LocalParameter

572806
value: -1000.0
type: LocalParameter

574064
value: 0.0
type: LocalParameter

265027
stoichiometry: 1.0
species: 565042
type: SpeciesReference

280142
stoichiometry: 2.0
species: 564535
type: SpeciesReference

567613
notes: GPR_ASSOCIATION: RSP_2820 or RSP_1944 GENE_LIST: RSP_2820; RSP_1944; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: 2 S-Adenosyl-L-methionine + Uroporphyrinogen III + H+ <=> 2 S-Adenosyl-L-homocysteine + Precorrin 2 Confidence Level: 2
fast: false
type: Reaction
reversible: true
name: uroporphyrin-III C-methyltransferase
product: 271589
reactant: 271564
reactant: 271552
reactant: 271540
product: 271576
kinetic law: 271601

314583
stoichiometry: 1.0
species: 566810
type: SpeciesReference

309800
stoichiometry: 1.0
species: 564757
type: SpeciesReference

570509
value: -1000.0
type: LocalParameter

571012
value: 0.0
type: LocalParameter

566983
fast: false
reactant: 242016
product: 242040
product: 242052
type: Reaction
notes: GPR_ASSOCIATION: RSP_2532 GENE_LIST: RSP_2532; SUBSYSTEM: Biotin metabolism Equation: ATP + Biotin <=> Diphosphate + Biotinyl-5'-AMP Confidence Level: 2
name: biotin protein ligase
reversible: true
reactant: 242028
reactant: 242004
kinetic law: 242065

266974
stoichiometry: 1.0
species: 564345
type: SpeciesReference

572809
value: 0.0
type: LocalParameter

566477
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Octaprenyl-6-hydroxyphenol
type: Species

571725
value: 0.0
type: LocalParameter

567614
product: 271649
notes: GPR_ASSOCIATION: RSP_2826 GENE_LIST: RSP_2826; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: S-Adenosyl-L-methionine + Precorrin 2 <=> S-Adenosyl-L-homocysteine + Precorrin 3A Confidence Level: 2
kinetic law: 271661
fast: false
product: 271637
name: precorrin-2 C20-methyltransferase
reactant: 271625
reactant: 271613
type: Reaction
reversible: true

317325
stoichiometry: 1.0
species: 565891
type: SpeciesReference

574122
value: -1000.0
type: LocalParameter

574061
value: -1000.0
type: LocalParameter

566986
kinetic law: 242214
product: 242202
reversible: false
fast: false
reactant: 242178
name: ribulose bisophosphate carboxylase
product: 242190
notes: GPR_ASSOCIATION: (RSP_1282 and RSP_1281) or RSP_3271 GENE_LIST: RSP_1282; RSP_1281; RSP_3271; SUBSYSTEM: Carbon fixation in photosynthetic organisms Equation: D-Ribulose 1,5-bisphosphate + CO2 + H2O <=> 2 3-Phospho-D-glycerate Confidence Level: 4
type: Reaction
reactant: 242166
reactant: 242154

571162
value: -1000.0
type: LocalParameter

274165
stoichiometry: 1.0
species: 564345
type: SpeciesReference

284766
stoichiometry: 1.0
species: 564387
type: SpeciesReference

291417
stoichiometry: 1.0
species: 564345
type: SpeciesReference

566251
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: NH3[e]
type: Species

570508
value: 0.0
type: LocalParameter

565099
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-3-Methyl-2-oxopentanoicacid
type: Species

572808
value: 1000.0
type: LocalParameter

566476
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-2-Aceto-2-hydroxybutanoate
type: Species

571726
value: -1000.0
type: LocalParameter

574123
value: 1000.0
type: LocalParameter

567615
name: precorrin-3 methyltransferase
reversible: true
product: 271698
kinetic law: 271734
reactant: 271674
reactant: 271686
product: 271710
notes: GPR_ASSOCIATION: RSP_2824 GENE_LIST: RSP_2824; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: S-Adenosyl-L-methionine + Precorrin 3B <=> S-Adenosyl-L-homocysteine + Precorrin 4 + H+ Confidence Level: 2
product: 271722
type: Reaction
fast: false

564943
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Acetyl-D-glucosamine6-phosphate
type: Species

571163
value: 1000.0
type: LocalParameter

566250
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: NH3[p]
type: Species

244620
stoichiometry: 1.0
species: 564685
type: SpeciesReference

295964
stoichiometry: 1.0
species: 564393
type: SpeciesReference

276900
stoichiometry: 1.0
species: 564775
type: SpeciesReference

566991
kinetic law: 242480
product: 242456
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Carbon fixation in photosynthetic organisms Equation: Sedoheptulose 1,7-bisphosphate + H2O <=> Sedoheptulose 7-phosphate + Orthophosphate Confidence Level: 1
type: Reaction
fast: false
reversible: false
reactant: 242432
reactant: 242444
product: 242468

570221
value: 0.0
type: LocalParameter

570937
value: -1000.0
type: LocalParameter

567030
product: 244353
notes: GPR_ASSOCIATION: RSP_0968 GENE_LIST: RSP_0968; SUBSYSTEM: Citrate cycle (TCA cycle) Equation: (S)-Malate + NAD+ <=> Oxaloacetate + NADH + H+ Confidence Level: 4
reactant: 244329
product: 244365
fast: false
product: 244341
kinetic law: 244378
reactant: 244317
reversible: true
name: malate dehydrogenase
type: Reaction

567835
name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
reactant: 286876
fast: false
notes: GPR_ASSOCIATION: RSP_6071 GENE_LIST: RSP_6071; SUBSYSTEM: Terpenoid backbone biosynthesis Equation: 2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol <=> 2-C-Methyl-D-erythritol 2,4-cyclodiphosphate + CMP + H+ Confidence Level: 2
product: 286901
product: 286889
product: 286914
type: Reaction
reversible: true
kinetic law: 286926

571736
value: 0.0
type: LocalParameter

574133
value: 0.0
type: LocalParameter

569359
value: 0.0
type: LocalParameter

569986
value: 0.0
type: LocalParameter

567621
type: Reaction
product: 272193
reactant: 272145
name: cobyrinic acid a,c-diamide synthase
product: 272206
product: 272181
reversible: true
reactant: 272121
fast: false
product: 272157
product: 272169
reactant: 272133
kinetic law: 272218
reactant: 272108
notes: GPR_ASSOCIATION: RSP_3185 GENE_LIST: RSP_3185; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Hydrogenobyrinate + 2 L-Glutamine + 2 ATP + 2 H2O <=> Hydrogenobyrinate a,c diamide + 2 Orthophosphate + 2 L-Glutamate + 2 ADP + H+ Confidence Level: 3

566252
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: NH3[e]
type: Species

239305
stoichiometry: 1.0
species: 564577
type: SpeciesReference

566992
name: farnesyl-diphosphate synthase
reactant: 242504
product: 242517
kinetic law: 242541
fast: false
reversible: false
notes: GPR_ASSOCIATION: RSP_0265 or RSP_1135 GENE_LIST: RSP_0265; RSP_1135; SUBSYSTEM: Carotenoid biosynthesis Equation: Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate Confidence Level: 4
reactant: 242492
product: 242529
type: Reaction

285056
stoichiometry: 1.0
species: 564742
type: SpeciesReference

570222
value: 0.0
type: LocalParameter

567031
kinetic law: 244427
product: 244415
product: 244403
reactant: 244391
notes: GPR_ASSOCIATION: RSP_1771 or RSP_0970 GENE_LIST: RSP_1771; RSP_0970; SUBSYSTEM: Citrate cycle (TCA cycle) Equation: Citrate <=> Acetate + Oxaloacetate Confidence Level: 3
fast: false
reversible: true
name: citrate lyase
type: Reaction

570938
value: 1000.0
type: LocalParameter

571734
value: 0.0
type: LocalParameter

299372
stoichiometry: 1.0
species: 564964
type: SpeciesReference

271698
stoichiometry: 1.0
species: 564399
type: SpeciesReference

571735
value: 0.0
type: LocalParameter

567834
reactant: 286828
notes: GPR_ASSOCIATION: RSP_1779 GENE_LIST: RSP_1779; SUBSYSTEM: Terpenoid backbone biosynthesis Equation: 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol + ATP <=> 2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + ADP Confidence Level: 2
product: 286852
fast: false
reversible: true
name: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
product: 286840
kinetic law: 286864
type: Reaction
reactant: 286816

271152
stoichiometry: 1.0
species: 564345
type: SpeciesReference

567729
type: Reaction
notes: GPR_ASSOCIATION: RSP_1387 GENE_LIST: RSP_1387; SUBSYSTEM: Purine metabolism Equation: AMP + H2O <=> Adenine + D-Ribose 5-phosphate Confidence Level: 2
product: 279768
kinetic law: 279780
fast: false
reactant: 279732
reversible: false
name: AMP nucleosidase
product: 279756
reactant: 279744

574132
value: 0.0
type: LocalParameter

300363
stoichiometry: 1.0
species: 564381
type: SpeciesReference

567620
kinetic law: 272096
product: 272083
reactant: 272071
reactant: 272059
notes: GPR_ASSOCIATION: RSP_6217 GENE_LIST: RSP_6217; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Precorrin 8X + H+<=> Hydrogenobyrinate Confidence Level: 2
fast: false
reversible: true
name: precorrin-8X methylmutase
type: Reaction

569985
value: 1000.0
type: LocalParameter

299227
stoichiometry: 1.0
species: 565790
type: SpeciesReference

310762
stoichiometry: 0.407290710075989
species: 566862
type: SpeciesReference

284078
stoichiometry: 1.0
species: 564402
type: SpeciesReference

256266
stoichiometry: 1.0
species: 564856
type: SpeciesReference

567032
fast: false
reactant: 244451
kinetic law: 244488
product: 244476
reactant: 244439
name: succinate dehydrogenase
product: 244463
type: Reaction
notes: GPR_ASSOCIATION: (RSP_3147 and RSP_3148 and RSP_3149 and RSP_3150) or (RSP_0974 and RSP_0975 and RSP_0976 and RSP_0979) GENE_LIST: RSP_3147; RSP_3148; RSP_3149; RSP_3150; RSP_0974; RSP_0975; RSP_0976; RSP_0979; SUBSYSTEM: Citrate cycle (TCA cycle) Equation: Ubiquinone + Succinate <=> Ubiquinol + Fumarate Confidence Level: 3
reversible: true

570935
value: 0.0
type: LocalParameter

242577
stoichiometry: 1.0
species: 564378
type: SpeciesReference

567837
kinetic law: 287096
reversible: false
reactant: 287035
reactant: 287047
product: 287072
name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
fast: false
type: Reaction
product: 287084
notes: GPR_ASSOCIATION: RSP_1666 GENE_LIST: RSP_1666; SUBSYSTEM: Terpenoid backbone biosynthesis Equation: 1-Hydroxy-2-methyl-2-butenyl 4-diphosphate + NADPH + H+ <=> Isopentenyl diphosphate + NADP+ + H2O Confidence Level: 2
product: 287060
reactant: 287023

270452
stoichiometry: 1.0
species: 564345
type: SpeciesReference

259458
stoichiometry: 1.0
species: 564345
type: SpeciesReference

569357
value: -1000.0
type: LocalParameter

266658
stoichiometry: 1.0
species: 564547
type: SpeciesReference

566254
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Sodium
type: Species

238074
stoichiometry: 1.0
species: 564405
type: SpeciesReference

567623
notes: GPR_ASSOCIATION: RSP_2831 GENE_LIST: RSP_2831; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: ATP + Cobinamide + H+ <=> Triphosphate + Adenosyl cobinamide Confidence Level: 2
product: 272374
product: 272386
fast: false
reactant: 272338
reversible: true
name: cob(I)yrinic acid a,c-diamide adenosyltransferase
reactant: 272362
reactant: 272350
kinetic law: 272398
type: Reaction

566994
product: 242589
reactant: 242565
name: farnesyl-diphosphate synthase
reversible: false
kinetic law: 242602
product: 242577
type: Reaction
notes: GPR_ASSOCIATION: RSP_0265 or RSP_1135 GENE_LIST: RSP_0265; RSP_1135; SUBSYSTEM: Carotenoid biosynthesis Equation: Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate Confidence Level: 4
reactant: 242553
fast: false

571732
value: 1000.0
type: LocalParameter

295323
stoichiometry: 1.0
species: 566310
type: SpeciesReference

570220
value: 1000.0
type: LocalParameter

564940
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-3-Hydroxy-3-methylglutaryl-CoA
type: Species

315515
stoichiometry: 1.0
species: 566842
type: SpeciesReference

244196
stoichiometry: 1.0
species: 566410
type: SpeciesReference

569358
value: 1000.0
type: LocalParameter

574130
value: 0.0
type: LocalParameter

567836
name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
reactant: 286938
kinetic law: 287011
fast: false
product: 286999
type: Reaction
reversible: true
product: 286975
product: 286987
notes: GPR_ASSOCIATION: RSP_2982 GENE_LIST: RSP_2982; SUBSYSTEM: Terpenoid backbone biosynthesis Equation: 2-C-Methyl-D-erythritol 2,4-cyclodiphosphate + Reduced ferredoxin + H+ <=> 1-Hydroxy-2-methyl-2-butenyl 4-diphosphate + H2O + Oxidized ferredoxin Confidence Level: 2
reactant: 286951
reactant: 286963

569983
value: -1000.0
type: LocalParameter

566255
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Sodium[p]
type: Species

567622
product: 272290
reactant: 272242
fast: false
type: Reaction
name: cobaltochelatase
product: 272302
reactant: 272254
product: 272314
kinetic law: 272326
reactant: 272230
reversible: true
notes: GPR_ASSOCIATION: RSP_2827 and RSP_1977and RSP_1976 GENE_LIST: RSP_2827; RSP_1977; RSP_1976; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Hydrogenobyrinate a,c diamide + Cobalt ion + ATP + H2O <=> Cob(II)yrinate a,c diamide + Orthophosphate + ADP + 4 H+ Confidence Level: 2
product: 272278
reactant: 272266

570225
value: 1000.0
type: LocalParameter

274384
stoichiometry: 1.0
species: 564369
type: SpeciesReference

575058
value: 1000.0
type: LocalParameter

569242
value: 1000.0
type: LocalParameter

571731
value: -1000.0
type: LocalParameter

243631
stoichiometry: 1.0
species: 564393
type: SpeciesReference

566256
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Sodium[e]
type: Species

569982
value: 0.0
type: LocalParameter

567831
product: 286634
kinetic law: 286658
product: 286646
reactant: 286598
notes: GPR_ASSOCIATION: RSP_0254 or RSP_1134 GENE_LIST: RSP_0254; RSP_1134; SUBSYSTEM: Terpenoid backbone biosynthesis Equation: Pyruvate + D-Glyceraldehyde 3-phosphate + H+ <=> 1-Deoxy-D-xylulose 5-phosphate + CO2 Confidence Level: 2
reactant: 286622
name: 1-deoxy-D-xylulose-5-phosphate synthase
fast: false
reversible: false
reactant: 286610
type: Reaction

569355
value: 0.0
type: LocalParameter

567034
name: citrate synthase
product: 244560
reversible: true
reactant: 244524
kinetic law: 244572
reactant: 244512
product: 244548
type: Reaction
reactant: 244500
fast: false
notes: GPR_ASSOCIATION: RSP_1994 GENE_LIST: RSP_1994; SUBSYSTEM: Citrate cycle (TCA cycle) Equation: Citrate + CoA + H+ <=> Acetyl-CoA + H2O + Oxaloacetate Confidence Level: 2
product: 244536

252749
stoichiometry: 1.0
species: 564351
type: SpeciesReference

568413
value: 1000.0
type: LocalParameter

249965
stoichiometry: 1.0
species: 566428
type: SpeciesReference

570226
value: 0.0
type: LocalParameter

571730
value: 0.0
type: LocalParameter

575057
value: -1000.0
type: LocalParameter

569243
value: 0.0
type: LocalParameter

574281
value: 0.0
type: LocalParameter

571019
value: 0.0
type: LocalParameter

570513
value: 0.0
type: LocalParameter

567830
fast: false
reactant: 286502
kinetic law: 286586
name: FAD dependent oxidoreductase
product: 286550
product: 286526
reactant: 286490
product: 286538
reactant: 286514
product: 286562
type: Reaction
product: 286574
reversible: false
notes: GPR_ASSOCIATION: RSP_4012 GENE_LIST: RSP_4012; SUBSYSTEM: Taurine and hypotaurine metabolism Equation: Taurine + 2-Oxoglutarate + Oxygen <=> Sulfite + Aminoacetaldehyde + Succinate + CO2 + H+ Confidence Level: 3

569981
value: 0.0
type: LocalParameter

569356
value: 0.0
type: LocalParameter

567035
kinetic law: 244608
product: 244596
reactant: 244584
notes: GPR_ASSOCIATION: RSP_1806 GENE_LIST: RSP_1806; SUBSYSTEM: Citrate cycle (TCA cycle) Equation: Citrate <=> Isocitrate Confidence Level: 2
fast: false
reversible: true
name: aconitate hydratase
type: Reaction

568412
value: -1000.0
type: LocalParameter

235744
stoichiometry: 1.0
species: 564360
type: SpeciesReference

574280
value: 0.0
type: LocalParameter

258818
stoichiometry: 1.0
species: 565574
type: SpeciesReference

570939
value: 0.0
type: LocalParameter

278988
stoichiometry: 2.0
species: 564535
type: SpeciesReference

569240
value: 0.0
type: LocalParameter

569353
value: -1000.0
type: LocalParameter

277745
stoichiometry: 1.0
species: 564844
type: SpeciesReference

251672
stoichiometry: 1.0
species: 564583
type: SpeciesReference

571018
value: 1000.0
type: LocalParameter

299989
stoichiometry: 1.0
species: 564418
type: SpeciesReference

249819
stoichiometry: 1.0
species: 566425
type: SpeciesReference

312082
stoichiometry: 1.0
species: 564366
type: SpeciesReference

569980
value: 1000.0
type: LocalParameter

572811
value: 0.0
type: LocalParameter

317061
stoichiometry: 1.0
species: 564535
type: SpeciesReference

295747
stoichiometry: 1.0
species: 564535
type: SpeciesReference

566258
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Sodium[e]
type: Species

570510
value: 1000.0
type: LocalParameter

568411
value: 0.0
type: LocalParameter

567036
kinetic law: 244657
product: 244644
product: 244632
reactant: 244620
notes: GPR_ASSOCIATION: RSP_2138 GENE_LIST: RSP_2138; SUBSYSTEM: Citrate cycle (TCA cycle) Equation: (S)-Malate <=> Fumarate + H2O Confidence Level: 2
fast: false
reversible: true
name: fumarate hydratase
type: Reaction

287907
stoichiometry: 1.0
species: 564466
type: SpeciesReference

289079
stoichiometry: 1.0
species: 566250
type: SpeciesReference

567833
kinetic law: 286804
fast: false
notes: GPR_ASSOCIATION: RSP_2835 GENE_LIST: RSP_2835; SUBSYSTEM: Terpenoid backbone biosynthesis Equation: 2-C-Methyl-D-erythritol 4-phosphate + CTP + H+ <=> 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol + Diphosphate Confidence Level: 2
product: 286779
reactant: 286767
reactant: 286743
product: 286792
reactant: 286755
type: Reaction
reversible: true
name: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase

569241
value: -1000.0
type: LocalParameter

281529
stoichiometry: 1.0
species: 564345
type: SpeciesReference

263551
stoichiometry: 16.0
species: 564345
type: SpeciesReference

570224
value: 0.0
type: LocalParameter

571017
value: -1000.0
type: LocalParameter

566990
reactant: 242384
kinetic law: 242420
reactant: 242372
fast: false
reversible: false
product: 242396
name: phosphoglycolate phosphatase
type: Reaction
product: 242408
notes: GPR_ASSOCIATION: RSP_1278 or RSP_0412 or RSP_2504 GENE_LIST: RSP_1278; RSP_0412; RSP_2504; SUBSYSTEM: Carbon fixation in photosynthetic organisms Equation: 2-Phosphoglycolate + H2O <=> Glycolate + Orthophosphate Confidence Level: 3

572812
value: -1000.0
type: LocalParameter

572813
value: 1000.0
type: LocalParameter

567832
product: 286719
fast: false
name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
notes: GPR_ASSOCIATION: RSP_2709 GENE_LIST: RSP_2709; SUBSYSTEM: Terpenoid backbone biosynthesis Equation: 2-C-Methyl-D-erythritol 4-phosphate + NADP+ <=> 1-Deoxy-D-xylulose 5-phosphate + NADPH + H+ Confidence Level: 2
product: 286707
type: Reaction
reactant: 286683
product: 286695
kinetic law: 286731
reversible: true
reactant: 286671

292651
stoichiometry: 1.0
species: 565268
type: SpeciesReference

570511
value: 0.0
type: LocalParameter

566259
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Calcium
type: Species

278541
stoichiometry: 1.0
species: 564925
type: SpeciesReference

568410
value: 0.0
type: LocalParameter

569354
value: 1000.0
type: LocalParameter

300784
stoichiometry: 1.0
species: 566513
type: SpeciesReference

278433
stoichiometry: 1.0
species: 564366
type: SpeciesReference

280251
stoichiometry: 1.0
species: 564345
type: SpeciesReference

569246
value: 1000.0
type: LocalParameter

574286
value: 0.0
type: LocalParameter

235636
stoichiometry: 1.0
species: 564354
type: SpeciesReference

566022
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: sulfate[e]
type: Species

568417
value: 1000.0
type: LocalParameter

566147
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Glutamine[e]
type: Species

567722
fast: false
kinetic law: 279270
reactant: 279209
reactant: 279221
reactant: 279233
name: ribonucleotide-diphosphate reductase
product: 279258
product: 279245
notes: GPR_ASSOCIATION: RSP_2495 or RSP_3547 GENE_LIST: RSP_2495; RSP_3547; SUBSYSTEM: Purine metabolism Equation: dGDP + Thioredoxin disulfide + H2O <=> GDP + Thioredoxin Confidence Level: 2
reversible: true
type: Reaction

298851
stoichiometry: 1.0
species: 564357
type: SpeciesReference

243522
stoichiometry: 1.0
species: 566397
type: SpeciesReference

575054
value: 0.0
type: LocalParameter

569351
value: 0.0
type: LocalParameter

569247
value: 0.0
type: LocalParameter

300206
stoichiometry: 1.0
species: 566510
type: SpeciesReference

253126
stoichiometry: 1.0
species: 565757
type: SpeciesReference

566023
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: sulfate[e]
type: Species

251067
stoichiometry: 1.0
species: 565730
type: SpeciesReference

568416
value: -1000.0
type: LocalParameter

570622
value: -1000.0
type: LocalParameter

566148
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Leucine[p]
type: Species

567721
kinetic law: 279197
reversible: true
product: 279172
type: Reaction
notes: GPR_ASSOCIATION: RSP_2919 GENE_LIST: RSP_2919; SUBSYSTEM: Purine metabolism Equation: ATP + dGMP <=> ADP + dGDP Confidence Level: 2
reactant: 279148
reactant: 279160
name: guanylate kinase
product: 279184
fast: false

250133
stoichiometry: 1.0
species: 564360
type: SpeciesReference

253998
stoichiometry: 1.0
species: 564571
type: SpeciesReference

566786
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2,5-Diaminopyrimidinenucleosidetriphosphate
type: Species

575053
value: 1000.0
type: LocalParameter

241809
stoichiometry: 1.0
species: 564427
type: SpeciesReference

569352
value: 0.0
type: LocalParameter

241204
stoichiometry: 1.0
species: 564682
type: SpeciesReference

570228
value: -1000.0
type: LocalParameter

568415
value: 0.0
type: LocalParameter

569244
value: 0.0
type: LocalParameter

567724
product: 279378
name: deoxyguanosinetriphosphate triphosphohydrolase-like protein
product: 279390
kinetic law: 279402
reactant: 279354
reversible: true
fast: false
type: Reaction
reactant: 279366
notes: GPR_ASSOCIATION: RSP_1621 or RSP_3644 or RSP_2659 GENE_LIST: RSP_1621; RSP_3644; RSP_2659; SUBSYSTEM: Purine metabolism Equation: dGTP + H2O <=> Deoxyguanosine + Triphosphate Confidence Level: 2

574284
value: 0.0
type: LocalParameter

302005
stoichiometry: 1.0
species: 564348
type: SpeciesReference

567510
notes: GPR_ASSOCIATION: RSP_2960 GENE_LIST: RSP_2960; SUBSYSTEM: Pantothenate and CoA biosynthesis Equation: ATP + Pantetheine 4'-phosphate + H+ <=> Diphosphate + Dephospho-CoA Confidence Level: 2
reactant: 265570
fast: false
reactant: 265582
type: Reaction
name: phosphopantetheine adenylyltransferase
reversible: true
product: 265618
product: 265606
reactant: 265594
kinetic law: 265630

305313
stoichiometry: 1.0
species: 564348
type: SpeciesReference

294377
stoichiometry: 1.0
species: 566069
type: SpeciesReference

575056
value: 0.0
type: LocalParameter

570227
value: 0.0
type: LocalParameter

566787
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2,5-Diamino-6-(5'-triphosphoryl-3',4'-trihydroxy-2'-oxopentyl)-
type: Species

568414
value: 0.0
type: LocalParameter

300050
stoichiometry: 1.0
species: 565985
type: SpeciesReference

567723
reactant: 279306
reactant: 279282
type: Reaction
reactant: 279294
fast: false
product: 279318
notes: GPR_ASSOCIATION: RSP_2495 or RSP_3547 GENE_LIST: RSP_2495; RSP_3547; SUBSYSTEM: Purine metabolism Equation: dADP + Thioredoxin disulfide + H2O <=> Thioredoxin + ADP Confidence Level: 2
kinetic law: 279342
reversible: true
product: 279330
name: ribonucleotide-diphosphate reductase

569245
value: -1000.0
type: LocalParameter

574283
value: 1000.0
type: LocalParameter

570620
value: 0.0
type: LocalParameter

252444
stoichiometry: 1.0
species: 565781
type: SpeciesReference

566360
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Octanoyl-CoA
type: Species

306557
stoichiometry: 1.0
species: 566450
type: SpeciesReference

566788
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine
type: Species

263660
stoichiometry: 1.0
species: 564345
type: SpeciesReference

569350
value: 1000.0
type: LocalParameter

248237
stoichiometry: 1.0
species: 565801
type: SpeciesReference

311292
stoichiometry: 1.0
species: 565307
type: SpeciesReference

274492
stoichiometry: 1.0
species: 564871
type: SpeciesReference

307280
stoichiometry: 1.0
species: 564535
type: SpeciesReference

248892
stoichiometry: 1.0
species: 566347
type: SpeciesReference

314850
stoichiometry: 1.0
species: 566822
type: SpeciesReference

573928
value: 0.0
type: LocalParameter

566143
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Cysteine[e]
type: Species

318581
stoichiometry: 1.0
species: 565262
type: SpeciesReference

310654
stoichiometry: 53.615732887
species: 564345
type: SpeciesReference

567726
name: adenylosuccinate synthetase
reversible: false
product: 279549
product: 279537
kinetic law: 279574
reactant: 279500
notes: GPR_ASSOCIATION: RSP_0366 GENE_LIST: RSP_0366; SUBSYSTEM: Purine metabolism Equation: GTP + IMP + L-Aspartate <=> GDP + Orthophosphate + N6-(1,2-Dicarboxyethyl)-AMP + 2 H+ Confidence Level: 2
fast: false
product: 279561
product: 279524
type: Reaction
reactant: 279487
reactant: 279512

566026
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Molybdate[p]
type: Species

567839
reactant: 287195
name: geranylgeranyl pyrophosphate synthase/polyprenyl synthetase
product: 287219
reversible: false
fast: false
notes: GPR_ASSOCIATION: RSP_0750 GENE_LIST: RSP_0750; SUBSYSTEM: Terpenoid backbone biosynthesis Equation: trans,trans-Farnesyl diphosphate + 5 Isopentenyl diphosphate <=> all-trans-Octaprenyl diphosphate + 5 Diphosphate Confidence Level: 2
type: Reaction
kinetic law: 287243
reactant: 287207
product: 287231

575050
value: 0.0
type: LocalParameter

570378
value: 0.0
type: LocalParameter

570933
value: 0.0
type: LocalParameter

566781
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Dimethylsulfoxide[e]
type: Species

564832
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Prephenate
type: Species

296085
stoichiometry: 1.0
species: 564345
type: SpeciesReference

305869
stoichiometry: 1.0
species: 566660
type: SpeciesReference

567511
reactant: 265654
product: 265666
kinetic law: 265702
product: 265678
type: Reaction
fast: false
notes: GPR_ASSOCIATION: RSP_1235 GENE_LIST: RSP_1235; SUBSYSTEM: Pantothenate and CoA biosynthesis Equation: ATP + Dephospho-CoA <=> ADP + CoA + H+ Confidence Level: 2
reactant: 265642
reversible: false
product: 265690
name: dephospho-CoA kinase

573927
value: 0.0
type: LocalParameter

256881
stoichiometry: 1.0
species: 565241
type: SpeciesReference

566144
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Glutamine[p]
type: Species

245284
stoichiometry: 1.0
species: 564427
type: SpeciesReference

295819
stoichiometry: 1.0
species: 565995
type: SpeciesReference

567725
type: Reaction
fast: false
reactant: 279426
reactant: 279414
name: RelA/SpoT family protein
notes: GPR_ASSOCIATION: RSP_1670 GENE_LIST: RSP_1670; SUBSYSTEM: Purine metabolism Equation: ATP + GTP <=> AMP + Guanosine 3'-diphosphate 5'-triphosphate + H+ Confidence Level: 2
product: 279450
kinetic law: 279475
product: 279463
product: 279438
reversible: false

302875
stoichiometry: 1.0
species: 566573
type: SpeciesReference

272880
stoichiometry: 1.0
species: 564430
type: SpeciesReference

567838
product: 287158
name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
reactant: 287133
reversible: true
reactant: 287120
product: 287146
type: Reaction
notes: GPR_ASSOCIATION: RSP_1666 GENE_LIST: RSP_1666; SUBSYSTEM: Terpenoid backbone biosynthesis Equation: 1-Hydroxy-2-methyl-2-butenyl 4-diphosphate + NADPH + H+ <=> Dimethylallyl diphosphate + NADP+ + H2O Confidence Level: 2
product: 287170
kinetic law: 287182
fast: false
reactant: 287108

238378
stoichiometry: 1.0
species: 564712
type: SpeciesReference

566782
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Dimethylsulfide[e]
type: Species

314134
stoichiometry: 1.0
species: 565625
type: SpeciesReference

260087
stoichiometry: 1.0
species: 565924
type: SpeciesReference

262974
stoichiometry: 1.0
species: 564396
type: SpeciesReference

273961
stoichiometry: 1.0
species: 564360
type: SpeciesReference

569988
value: -1000.0
type: LocalParameter

568419
value: 0.0
type: LocalParameter

281108
stoichiometry: 1.0
species: 566453
type: SpeciesReference

569248
value: 0.0
type: LocalParameter

567514
kinetic law: 265824
product: 265811
product: 265799
reactant: 265787
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Pantothenate and CoA biosynthesis Equation: N-((R)-Pantothenoyl)-L-cysteine <=> Pantetheine + CO2 Confidence Level: 1
fast: false
reversible: false
type: Reaction

574288
value: 1000.0
type: LocalParameter

570930
value: 0.0
type: LocalParameter

567728
reactant: 279660
reactant: 279672
notes: GPR_ASSOCIATION: RSP_1597 GENE_LIST: RSP_1597; SUBSYSTEM: Purine metabolism Equation: Deoxyadenosine + H2O + H+ <=> Deoxyinosine + NH3 Confidence Level: 2
reactant: 279684
name: adenosine deaminase
type: Reaction
reversible: false
product: 279696
kinetic law: 279720
product: 279708
fast: false

566028
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Molybdate[e]
type: Species

270561
stoichiometry: 1.0
species: 564378
type: SpeciesReference

266549
stoichiometry: 1.0
species: 564354
type: SpeciesReference

570376
value: 0.0
type: LocalParameter

566783
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Dimethylsulfide[e]
type: Species

242686
stoichiometry: 1.0
species: 566383
type: SpeciesReference

315623
stoichiometry: 1.0
species: 564366
type: SpeciesReference

296581
stoichiometry: 1.0
species: 564535
type: SpeciesReference

573929
value: -1000.0
type: LocalParameter

566029
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Molybdate[e]
type: Species

566146
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Glutamine[e]
type: Species

568418
value: 0.0
type: LocalParameter

567513
reactant: 265714
reactant: 265726
kinetic law: 265775
type: Reaction
product: 265738
reversible: true
product: 265750
product: 265763
fast: false
notes: GPR_ASSOCIATION: RSP_1673 GENE_LIST: RSP_1673; SUBSYSTEM: Pantothenate and CoA biosynthesis Equation: CoA + Apo-[acyl-carrier-protein] <=> Adenosine 3',5'-bisphosphate + Acyl-carrier protein + H+ Confidence Level: 2
name: 4-phosphopantetheinyl transferase

569987
value: 0.0
type: LocalParameter

575051
value: -1000.0
type: LocalParameter

570931
value: -1000.0
type: LocalParameter

567727
reactant: 279587
product: 279635
kinetic law: 279648
reactant: 279611
name: adenosine deaminase
reversible: false
notes: GPR_ASSOCIATION: RSP_1597 GENE_LIST: RSP_1597; SUBSYSTEM: Purine metabolism Equation: Adenosine + H2O + H+<=> Inosine + NH3 Confidence Level: 2
fast: false
product: 279623
reactant: 279599
type: Reaction

574287
value: -1000.0
type: LocalParameter

569249
value: -1000.0
type: LocalParameter

312384
stoichiometry: 1.0
species: 566774
type: SpeciesReference

259566
stoichiometry: 1.0
species: 565775
type: SpeciesReference

570377
value: 1000.0
type: LocalParameter

570932
value: 1000.0
type: LocalParameter

566784
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Formamidopyrimidinenucleosidetriphosphate
type: Species

256374
stoichiometry: 1.0
species: 564357
type: SpeciesReference

277178
stoichiometry: 1.0
species: 566236
type: SpeciesReference

574057
value: 1000.0
type: LocalParameter

241276
stoichiometry: 1.0
species: 564396
type: SpeciesReference

566057
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: choline[e]
type: Species

239440
stoichiometry: 1.0
species: 565451
type: SpeciesReference

316723
stoichiometry: 0.312885938902641
species: 565409
type: SpeciesReference

251527
stoichiometry: 1.0
species: 565742
type: SpeciesReference

241968
stoichiometry: 2.0
species: 564517
type: SpeciesReference

291558
stoichiometry: 1.0
species: 564535
type: SpeciesReference

571158
value: 1000.0
type: LocalParameter

574485
value: -1000.0
type: LocalParameter

278409
stoichiometry: 1.0
species: 564348
type: SpeciesReference

256168
stoichiometry: 1.0
species: 566377
type: SpeciesReference

256229
stoichiometry: 1.0
species: 564366
type: SpeciesReference

573315
value: 1000.0
type: LocalParameter

280916
stoichiometry: 1.0
species: 564952
type: SpeciesReference

309944
stoichiometry: 0.144502841748517
species: 565559
type: SpeciesReference

566578
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (S)-Lactate[e]
type: Species

570780
value: 0.0
type: LocalParameter

279937
stoichiometry: 1.0
species: 564345
type: SpeciesReference

566056
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: choline[p]
type: Species

273731
stoichiometry: 1.0
species: 564646
type: SpeciesReference

286755
stoichiometry: 1.0
species: 564499
type: SpeciesReference

570623
value: 1000.0
type: LocalParameter

267361
stoichiometry: 1.0
species: 565105
type: SpeciesReference

567720
reversible: true
reactant: 279100
product: 279124
reactant: 279087
name: guanylate kinase
type: Reaction
fast: false
notes: GPR_ASSOCIATION: RSP_2919 GENE_LIST: RSP_2919; SUBSYSTEM: Purine metabolism Equation: ATP + GMP <=> ADP + GDP Confidence Level: 2
product: 279112
kinetic law: 279136

574486
value: 1000.0
type: LocalParameter

570624
value: 0.0
type: LocalParameter

571159
value: 0.0
type: LocalParameter

564826
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Chorismate
type: Species

566682
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2',3'-CyclicAMP[e]
type: Species

573314
value: -1000.0
type: LocalParameter

566577
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (S)-Lactate[e]
type: Species

310576
stoichiometry: 5.9E-5
species: 565709
type: SpeciesReference

566055
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-proline[e]
type: Species

574059
value: 0.0
type: LocalParameter

570783
value: -1000.0
type: LocalParameter

278288
stoichiometry: 1.0
species: 564348
type: SpeciesReference

570627
value: -1000.0
type: LocalParameter

302030
stoichiometry: 1.0
species: 566548
type: SpeciesReference

288536
stoichiometry: 1.0
species: 564366
type: SpeciesReference

252894
stoichiometry: 1.0
species: 564484
type: SpeciesReference

573313
value: 0.0
type: LocalParameter

566576
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: (S)-Lactate[p]
type: Species

566681
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2',3'-CyclicAMP[e]
type: Species

564829
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Nicotinate
type: Species

566680
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 2',3'-CyclicAMP[p]
type: Species

302620
stoichiometry: 1.0
species: 566566
type: SpeciesReference

570782
value: 0.0
type: LocalParameter

566789
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Octadecanoicacid
type: Species

570626
value: 0.0
type: LocalParameter

237265
stoichiometry: 1.0
species: 564411
type: SpeciesReference

260292
stoichiometry: 2.0
species: 564517
type: SpeciesReference

574488
value: 0.0
type: LocalParameter

566332
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: gamma-Glutamyl-gamma-aminobutyrate
type: Species

300628
stoichiometry: 1.0
species: 564408
type: SpeciesReference

315190
stoichiometry: 1.0
species: 566832
type: SpeciesReference

574053
value: 0.0
type: LocalParameter

566053
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-proline[e]
type: Species

574489
value: 0.0
type: LocalParameter

564823
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Pyridoxal
type: Species

569390
value: -1000.0
type: LocalParameter

573311
value: 0.0
type: LocalParameter

571041
value: 0.0
type: LocalParameter

274286
stoichiometry: 1.0
species: 564345
type: SpeciesReference

571154
value: 0.0
type: LocalParameter

284645
stoichiometry: 1.0
species: 564348
type: SpeciesReference

244766
stoichiometry: 1.0
species: 564399
type: SpeciesReference

570629
value: 0.0
type: LocalParameter

566331
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hydroxyspirilloxanthin
type: Species

573902
value: -1000.0
type: LocalParameter

574268
value: 0.0
type: LocalParameter

566052
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-proline[p]
type: Species

570628
value: 1000.0
type: LocalParameter

573310
value: 1000.0
type: LocalParameter

573901
value: 0.0
type: LocalParameter

566330
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Rhodovibrin
type: Species

574269
value: 0.0
type: LocalParameter

574055
value: 0.0
type: LocalParameter

310427
stoichiometry: 5.9E-5
species: 564372
type: SpeciesReference

265738
stoichiometry: 1.0
species: 564478
type: SpeciesReference

571043
value: 0.0
type: LocalParameter

293060
stoichiometry: 1.0
species: 564348
type: SpeciesReference

569392
value: 0.0
type: LocalParameter

311391
stoichiometry: 1.0
species: 564363
type: SpeciesReference

566051
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: betaine[e]
type: Species

316251
stoichiometry: 5.0E-5
species: 564405
type: SpeciesReference

281312
stoichiometry: 1.0
species: 564369
type: SpeciesReference

289779
stoichiometry: 1.0
species: 566015
type: SpeciesReference

571156
value: 0.0
type: LocalParameter

256579
stoichiometry: 1.0
species: 565816
type: SpeciesReference

286963
stoichiometry: 1.0
species: 564535
type: SpeciesReference

314814
stoichiometry: 1.0
species: 565051
type: SpeciesReference

263539
stoichiometry: 4.0
species: 565943
type: SpeciesReference

574056
value: 0.0
type: LocalParameter

569391
value: 1000.0
type: LocalParameter

288212
stoichiometry: 1.0
species: 564348
type: SpeciesReference

249603
stoichiometry: 1.0
species: 565900
type: SpeciesReference

571157
value: -1000.0
type: LocalParameter

571045
value: 1000.0
type: LocalParameter

571737
value: 1000.0
type: LocalParameter

566570
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Benzoate[e]
type: Species

311268
stoichiometry: 1.0
species: 564628
type: SpeciesReference

298260
stoichiometry: 1.0
species: 564363
type: SpeciesReference

574158
value: 0.0
type: LocalParameter

567872
kinetic law: 289987
product: 289972
reactant: 289924
product: 289960
name: ABC sucrose transporter
product: 289948
reactant: 289911
reactant: 289899
fast: false
product: 289936
reversible: false
notes: GPR_ASSOCIATION: RSP_2870 and RSP_2871 and RSP_2872 and RSP_2873 GENE_LIST: RSP_2870; RSP_2871; RSP_2872; RSP_2873; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + sucrose[p] <=> ADP + H+ + Orthophosphate + sucrose Confidence Level: 2
type: Reaction

566336
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Ureidoisobutyrate
type: Species

566263
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Calcium[e]
type: Species

566489
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Arabinose
type: Species

571046
value: 0.0
type: LocalParameter

570789
value: 1000.0
type: LocalParameter

566262
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Calcium[e]
type: Species

295952
stoichiometry: 1.0
species: 565997
type: SpeciesReference

574050
value: 0.0
type: LocalParameter

564979
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phosphatidate
type: Species

567093
kinetic law: 246732
product: 246720
reactant: 246708
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: spermidine[e] <=> Confidence Level:
fast: false
reversible: false
name: spermidine exchange
type: Reaction

571151
value: 0.0
type: LocalParameter

314400
stoichiometry: 1.0
species: 566248
type: SpeciesReference

296509
stoichiometry: 1.0
species: 564535
type: SpeciesReference

315792
stoichiometry: 0.142057409042004
species: 565559
type: SpeciesReference

567008
kinetic law: 243293
product: 243281
reactant: 243269
reactant: 243257
notes: GPR_ASSOCIATION: RSP_0267 GENE_LIST: RSP_0267; SUBSYSTEM: Carotenoid biosynthesis Equation: Anhydrorhodovibrin + H2O <=> Rhodovibrin Confidence Level: 3
fast: false
reversible: true
name: hydroxyneurosporene synthase
type: Reaction

266961
stoichiometry: 1.0
species: 565322
type: SpeciesReference

574159
value: 0.0
type: LocalParameter

570788
value: -1000.0
type: LocalParameter

567873
product: 290073
type: Reaction
name: ABC glycerol transporter
reversible: false
product: 290036
reactant: 290012
kinetic law: 290086
reactant: 289999
reactant: 290024
product: 290060
notes: GPR_ASSOCIATION: (RSP_2663 and RSP_2665 and RSP_2666 and RSP_2667) or (RSP_2663 and RSP_2665 and RSP_2666 and RSP_2669) GENE_LIST: RSP_2663; RSP_2665; RSP_2666; RSP_2667; RSP_2663; RSP_2665; RSP_2666; RSP_2669; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + glycerol[p] <=> ADP + H+ + Orthophosphate + glycerol Confidence Level: 2
product: 290048
fast: false

566488
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3,4-Dihydroxy-2-butanone4-phosphate
type: Species

566335
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Acetyl-L-citrulline
type: Species

567090
kinetic law: 246660
product: 246648
reactant: 246636
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Molybdate[e] <=> Confidence Level:
fast: false
reversible: false
name: molybdate exchange
type: Reaction

570230
value: 1000.0
type: LocalParameter

566689
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2',3'-CyclicUMP[e]
type: Species

571047
value: 0.0
type: LocalParameter

575017
value: 0.0
type: LocalParameter

571152
value: 0.0
type: LocalParameter

567007
kinetic law: 243245
product: 243233
reactant: 243221
reactant: 243209
notes: GPR_ASSOCIATION: RSP_0267 GENE_LIST: RSP_0267; SUBSYSTEM: Carotenoid biosynthesis Equation: Lycopene + H2O <=> Rhodopin Confidence Level: 3
fast: false
reversible: true
name: hydroxyneurosporene synthase
type: Reaction

571739
value: 0.0
type: LocalParameter

567648
product: 274335
fast: false
product: 274348
reactant: 274310
reactant: 274322
notes: GPR_ASSOCIATION: s0001 GENE_LIST: SUBSYSTEM: Propanoate metabolism Equation: (2S)-2-Isopropyl-3-oxosuccinate + H+ <=> 4-Methyl-2-oxopentanoate + CO2 Confidence Level: 2
reversible: false
kinetic law: 274360
type: Reaction

269071
stoichiometry: 1.0
species: 564345
type: SpeciesReference

566334
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans-4-Hydroxy-L-proline
type: Species

281204
stoichiometry: 1.0
species: 564535
type: SpeciesReference

567870
product: 289779
product: 289755
type: Reaction
reactant: 289731
product: 289743
name: ABC Maltose transporter
reactant: 289707
kinetic law: 289791
reactant: 289719
notes: GPR_ASSOCIATION: (RSP_3941 and RSP_3942 and RSP_3943 and RSP_3948) or (RSP_2870 and RSP_2871 and RSP_2872 and RSP_2873) GENE_LIST: RSP_3941; RSP_3942; RSP_3943; RSP_3948; RSP_2870; RSP_2871; RSP_2872; RSP_2873; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + Maltose[p] <=> ADP + H+ + Orthophosphate + Maltose Confidence Level: 2
reversible: false
fast: false
product: 289767

571048
value: 0.0
type: LocalParameter

566260
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Calcium[p]
type: Species

575018
value: -1000.0
type: LocalParameter

571153
value: 1000.0
type: LocalParameter

566688
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 2',3'-CyclicUMP[p]
type: Species

567091
kinetic law: 246696
product: 246684
reactant: 246672
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: putrescine[e] <=> Confidence Level:
fast: false
reversible: false
name: putrescine exchange
type: Reaction

248335
stoichiometry: 1.0
species: 565649
type: SpeciesReference

567649
product: 274444
product: 274420
kinetic law: 274456
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Propanoate metabolism Equation: 2-Oxobutanoate + Orthophosphate + 0.5 Oxygen + H+ <=> Propanoyl phosphate + CO2 + H2O Confidence Level: 1
fast: false
type: Reaction
reactant: 274396
reactant: 274408
reactant: 274384
reactant: 274372
reversible: false
product: 274432

567006
product: 243173
product: 243161
kinetic law: 243197
name: phytoene synthase
product: 243185
fast: false
reversible: false
reactant: 243149
type: Reaction
notes: GPR_ASSOCIATION: RSP_0270 GENE_LIST: RSP_0270; SUBSYSTEM: Carotenoid biosynthesis Equation: Prephytoene diphosphate <=> Phytoene + Diphosphate Confidence Level: 3

574052
value: 1000.0
type: LocalParameter

265848
stoichiometry: 1.0
species: 565670
type: SpeciesReference

280178
stoichiometry: 1.0
species: 564345
type: SpeciesReference

251635
stoichiometry: 1.0
species: 564372
type: SpeciesReference

566486
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Propanoylphosphate
type: Species

567871
reactant: 289803
notes: GPR_ASSOCIATION: (RSP_3287 and RSP_3288 and RSP_3289 and RSP_3290) or (RSP_3672 and RSP_3673 and RSP_3674 and RSP_3677) GENE_LIST: RSP_3287; RSP_3288; RSP_3289; RSP_3290; RSP_3672; RSP_3673; RSP_3674; RSP_3677; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + glycerol-3-phosphate[p] <=> ADP + H+ + Orthophosphate + glycerol-3-phosphate Confidence Level: 2
kinetic law: 289887
type: Reaction
fast: false
reversible: false
product: 289875
product: 289851
reactant: 289827
product: 289863
reactant: 289815
name: ABC glycerol-3-phosphate transporter
product: 289839

566574
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (R)-Lactate[e]
type: Species

304381
stoichiometry: 1.0
species: 566617
type: SpeciesReference

285284
stoichiometry: 1.0
species: 564366
type: SpeciesReference

256011
stoichiometry: 1.0
species: 564366
type: SpeciesReference

281832
stoichiometry: 1.0
species: 564535
type: SpeciesReference

288102
stoichiometry: 2.0
species: 566255
type: SpeciesReference

566485
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Sulfoacetaldehyde
type: Species

570785
value: 0.0
type: LocalParameter

567876
fast: false
product: 290338
reactant: 290290
name: ABC fructose transporter
reactant: 290302
reactant: 290314
kinetic law: 290375
product: 290350
reversible: false
product: 290326
notes: GPR_ASSOCIATION: RSP_0990 and RSP_0989 and RSP_0988 GENE_LIST: RSP_0990; RSP_0989; RSP_0988; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + D-fructose[p] <=> ADP + H+ + Orthophosphate + D-fructose Confidence Level: 2
type: Reaction
product: 290362