COPASI152
is version of: GO:0006402
fast: false
reversible: false
name: cP9_m_degr
type: Reaction

COPASI51
constant: true
value: 0.7
name: m15
type: Parameter

COPASI37
constant: true
value: 0.54
name: m1
type: Parameter

COPASI3
is version of: Q6LA42
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.069699996643553
initial amount: NaN
name: cNI
type: Species

COPASI91
constant: true
value: 0.62
name: p16
type: Parameter

COPASI61
constant: true
value: 0.9
name: m25
type: Parameter

COPASI191
type: Reaction
reversible: true
is version of: GO:0006461
fast: false
name: cG_cZTL_assoc

COPASI89
constant: true
value: 0.14
name: p14
type: Parameter

COPASI60
constant: true
value: 0.5
name: m24
type: Parameter

COPASI79
constant: true
value: 0.5
name: p4
type: Parameter

COPASI23
constant: true
value: 0.6
name: g3
type: Parameter

COPASI151
is version of: GO:0009299
type: Reaction
reversible: false
name: cP9_m_trscr
fast: false

COPASI52
constant: true
value: 0.5
name: m16
type: Parameter

COPASI38
constant: true
value: 0.24
name: m2
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#cb28c14e_e469_405a_99c8_1f88c26fea8b
stoichiometry: 1.0
type: SpeciesReference

COPASI62
constant: true
value: 0.5
name: m26
type: Parameter

COPASI90
constant: true
value: 2.0
name: p15
type: Parameter

COPASI2
type: Species
has part: O04211
initial amount: NaN
has only substance units: false
name: cEC
has part: O82804
boundary condition: false
has part: F4J959
initial concentration: 0.0708999965857662
constant: false

COPASI10
constant: true
value: 0.04
name: n4
type: Parameter

COPASI192
is version of: GO:0006412
fast: false
reversible: false
name: cZTL_trsl
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#fbdfeaa0_72ea_41d3_b964_102805f2bc65
exponent: 1.0
scale: 0
multipler: 3600.0
kind: SECOND
type: SBMLUnit

http://identifiers.org/biomodels.db/BIOMD0000000445#c2e5cfce_7679_49c6_ad78_f4bbe463a64f
has only substance units: false
constant: false
initial concentration: 0.649999968698844
boundary condition: false
name: cCOP1n
type: Species
is version of: P43254
initial amount: NaN
occurs in: GO:0005634

COPASI24
constant: true
value: 0.006
name: g4
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_1220c55e_2dcb_4c6d_a313_00b425239a11
name: time
type: SBMLUnitsDef

COPASI39
constant: true
value: 0.2
name: m3
type: Parameter

ORG:
  orgname: Edinburgh University
n:
  given: Alexandra
  family: Pokhilko

COPASI150
is version of: GO:0030163
fast: false
reversible: false
name: cP_degr
type: Reaction

COPASI140
constant: true
value: 0.1
name: p31
type: Parameter

COPASI63
constant: true
value: 0.1
name: m27
type: Parameter

COPASI49
constant: true
value: 0.32
name: m13
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#b49173ee_82b6_45f4_adf8_2701b3dda7e2
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#ff018e6a_b688_414e_b0f2_9cc1a42f30c5
stoichiometry: 1.0
type: SpeciesReference

COPASI11
constant: true
value: 0.4
name: n5
type: Parameter

COPASI21
constant: true
value: 0.1
name: g1
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_9b0412c5_03ba_4ae9_ad32_b34584ec8b85
stoichiometry: 1.0
type: SpeciesReference

COPASI77
constant: true
value: 0.27
name: p2
type: Parameter

COPASI50
constant: true
value: 0.4
name: m14
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_12b95de1_edfb_448e_9666_c0b1649ed0c1
stoichiometry: 1.0
type: SpeciesReference

COPASI64
constant: true
value: 28.0
name: m28
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#db3aa84f_1911_464d_b563_a3b378954530
initial concentration: 0.256599987643267
has only substance units: false
boundary condition: false
is version of: P43254
name: cCOP1d
initial amount: NaN
occurs in: GO:0005634
type: Species
constant: false

COPASI190
name: cG_degr
is version of: GO:0030163
fast: false
type: Reaction
reversible: false

http://identifiers.org/biomodels.db/BIOMD0000000445#_8deb79a1_3e79_4cd5_91b1_7177b18fa367
occurs in: GO:0005623
constant: true
size: 1.0
spatial dimensions: 3.0
name: def
type: Compartment

COPASI12
constant: true
value: 20.0
name: n6
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_0c03d482_50ae_4adb_913c_987d602400e5
constant: true
value: 2.0
name: a
type: Parameter

COPASI22
constant: true
value: 0.01
name: g2
type: Parameter

COPASI180
type: Reaction
name: cLUX_degr
fast: false
is version of: GO:0030163
reversible: false

COPASI78
constant: true
value: 0.1
name: p3
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_11718422_7602_491a_bf4e_2aca4626c3f4
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_730ecaf3_b019_494b_8435_ce5f8dc4e99f
constant: false
initial amount: NaN
occurs in: GO:0005634
type: Species
initial concentration: 0.0285999986227492
name: cE3n
has only substance units: false
boundary condition: false
is version of: O82804

COPASI47
constant: true
value: 1.0
name: m11
type: Parameter

COPASI33
constant: true
value: 1.0
name: g13
type: Parameter

COPASI65
constant: true
value: 0.3
name: m29
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#dbb97440_0ab4_4533_a708_9546847e0029
has only substance units: false
name: cNI_m
type: Species
initial concentration: 0.0730999964798238
is: CHEBI:33699
initial amount: NaN
boundary condition: false
constant: false
encodes: Q9LVG4

http://identifiers.org/biomodels.db/BIOMD0000000445#dfac548f_e72d_495b_a00b_f2c0dd08d1fe
has part: P92973
has part: Q6R0H1
initial concentration: 0.0787999962053368
type: Species
constant: false
is version of: CCO:U0000010
name: cLm
initial amount: NaN
has only substance units: false
boundary condition: false

http://identifiers.org/biomodels.db/BIOMD0000000445#f51656f8_de7a_4631_afee_8d130059d816
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#e4861a39_5c35_404b_bd64_1010891da0d9
constant: true
size: 1.0
spatial dimensions: 3.0
name: No Name
type: Compartment

BIOMD0000000445
parameter: COPASI129
parameter: COPASI106
reaction: COPASI168
name: function_4_cNI_m_trscr_1
parameter: COPASI127
parameter: COPASI104
parameter: COPASI16
name: function_4_cPP2C_degr_1
reaction: COPASI192
name: function_4_cG_cZTL_assoc
reaction: COPASI171
parameter: COPASI63
parameter: COPASI40
is described by: http://identifiers.org/pubmed/23506153
parameter: COPASI47
name: function_4_cG_m_trscr_1
reaction: COPASI176
name: function_4_cSnRK2_degr
parameter: COPASI45
name: function_4_cEC_form
reaction: COPASI157
reaction: COPASI174
parameter: COPASI50
species: COPASI2
parameter: COPASI66
name: function_4_cT_trsl
name: function_4_cT_m_degr
reaction: COPASI163
species: COPASI5
name: function_4_cPP2C_act_1
name: function_4_cL_m_degr
parameter: COPASI55
parameter: COPASI32
reaction: COPASI144
parameter: COPASI39
name: function_4_cABAR_m_trscr_1
name: function_4_cL_modif
name: function_4_cE3_degr
parameter: COPASI9
parameter: COPASI92
parameter: COPASI84
name: function_4_cNI_m_degr
parameter: COPASI111
reaction: COPASI199
name: function_4_cG_degr_1
function def: COPASI207
reaction: COPASI202
reaction: COPASI181
name: function_4_cCOP1c_trsl
parameter: COPASI97
parameter: COPASI132
species: COPASI6
parameter: COPASI73
parameter: COPASI21
reaction: COPASI150
parameter: COPASI89
parameter: COPASI139
parameter: COPASI130
reaction: COPASI178
parameter: COPASI71
parameter: COPASI121
name: function_4_cP7_degr
reaction: COPASI186
parameter: COPASI137
parameter: COPASI114
name: function_4_cG_cE3_assoc
parameter: COPASI26
reaction: COPASI184
reaction: COPASI167
parameter: COPASI76
parameter: COPASI24
parameter: COPASI103
name: function_4_cLUX_trsl
notes: Pokhilko2013 - TOC1 signalling in Arabidopsis circadian clock In this model, Pokhilko et al. has incorporated the negative transcriptional regulations of the core clock genes by TOC1 and the up-regulation of TOC1 expression by ABA signalling, to their previous model BIOMD0000000412 This model is described in the article: Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs. Pokhilko A, Mas P, Millar AJ. BMC Syst Biol. 2013 Mar 19;7(1):23. Abstract: BACKGROUND: 24-hour biological clocks are intimately connected to the cellular signalling network, which complicates the analysis of clock mechanisms. The transcriptional regulator TOC1 (TIMING OF CAB EXPRESSION 1) is a founding component of the gene circuit in the plant circadian clock. Recent results show that TOC1 suppresses transcription of multiple target genes within the clock circuit, far beyond its previously-described regulation of the morning transcription factors LHY (LATE ELONGATED HYPOCOTYL) and CCA1 (CIRCADIAN CLOCK ASSOCIATED 1). It is unclear how this pervasive effect of TOC1 affects the dynamics of the clock and its outputs. TOC1 also appears to function in a nested feedback loop that includes signalling by the plant hormone Abscisic Acid (ABA), which is upregulated by abiotic stresses, such as drought. ABA treatments both alter TOC1 levels and affect the clock's timing behaviour. Conversely, the clock rhythmically modulates physiological processes induced by ABA, such as the closing of stomata in the leaf epidermis. In order to understand the dynamics of the clock and its outputs under changing environmental conditions, the reciprocal interactions between the clock and other signalling pathways must be integrated. RESULTS: We extended the mathematical model of the plant clock gene circuit by incorporating the repression of multiple clock genes by TOC1, observed experimentally. The revised model more accurately matches the data on the clock's molecular profiles …
parameter: COPASI15
name: function_4_cP9_trsl
reaction: COPASI191
parameter: COPASI124
is: MODEL1209110002
parameter: COPASI13

COPASI55
constant: true
value: 0.9
name: m19
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#e72b135b_ff64_4f60_96f9_aa093337d9d1
name: substance
type: SBMLUnitsDef

http://identifiers.org/biomodels.db/BIOMD0000000445#_9143b57a_ea0f_40c9_b82f_3497706fd156
stoichiometry: 1.0
type: SpeciesReference

COPASI100
constant: true
value: 2.0
name: p25
type: Parameter

COPASI75
constant: true
value: 2.0
name: f
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#e5fde672_c50f_4cc6_bd33_0a143451a12b
stoichiometry: 1.0
type: SpeciesReference

COPASI13
constant: true
value: 0.1
name: n7
type: Parameter

COPASI27
constant: true
value: 1.0
name: g7
type: Parameter

COPASI85
constant: true
value: 0.54
name: p10
type: Parameter

COPASI7
constant: true
value: 2.6
name: n1
type: Parameter

COPASI96
constant: true
value: 1.0
name: p21
type: Parameter

COPASI110
constant: false
value: 0.5
name: D
type: Parameter

COPASI6
is version of: Q94BT6
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.250499987937016
initial amount: NaN
name: cZTL
type: Species

COPASI48
constant: true
value: 1.0
name: m12
type: Parameter

COPASI34
constant: true
value: 0.02
name: g14
type: Parameter

COPASI66
constant: true
value: 1.0
name: m30
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_6db332e9_e2e9_408a_b0e1_59e6d57fdfe1
stoichiometry: 1.0
type: SpeciesReference

COPASI56
constant: true
value: 0.6
name: m20
type: Parameter

COPASI76
constant: true
value: 0.13
name: p1
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#a2ee5a73_5c03_4b41_8a21_7cbb2a81cdd0
is version of: O82804
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.15029999276221
initial amount: NaN
name: cE3
type: Species

COPASI14
constant: true
value: 0.5
name: n8
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_5a52e72c_58df_47af_9008_c2bb736f8410
boundary condition: false
is version of: CHEBI:33699
initial amount: NaN
initial concentration: 0.0976999952951955
name: cT_m
encodes: Q9LKL2
has only substance units: false
type: Species
constant: false

COPASI28
constant: true
value: 0.04
name: g8
type: Parameter

COPASI86
constant: true
value: 0.5
name: p11
type: Parameter

COPASI95
constant: true
value: 0.1
name: p20
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_994386dc_91fd_4094_9914_de2dc87eff84
is version of: O04211
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.206999990031786
initial amount: NaN
name: cE4
type: Species

COPASI67
constant: true
value: 0.1
name: m31
type: Parameter

COPASI35
constant: true
value: 0.4
name: g15
type: Parameter

COPASI93
constant: true
value: 4.0
name: p18
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_97f6d115_a8b9_4f76_a260_111879d93da8
stoichiometry: 1.0
type: SpeciesReference

W3 CDTF: Fri May 17 13:53:43 BST 2013

COPASI5
initial amount: NaN
boundary condition: false
constant: false
has only substance units: false
type: Species
is version of: CHEBI:33699
encodes: Q8L500
name: cP9_m
initial concentration: 0.0657999968313599

COPASI45
constant: true
value: 0.2
name: m9
type: Parameter

COPASI53
constant: true
value: 0.5
name: m17
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#c0ae11dc_f583_4a9b_a8f9_6ba4c85df5e0
stoichiometry: 1.0
type: SpeciesReference

COPASI73
constant: true
value: 0.4
name: m37
type: Parameter

COPASI15
constant: true
value: 0.6
name: n9
type: Parameter

COPASI112
constant: true
value: 24.0
name: cyclePeriod
type: Parameter

COPASI87
constant: true
value: 10.0
name: p12
type: Parameter

COPASI94
constant: true
value: 1.0
name: p19
type: Parameter

COPASI25
constant: true
value: 0.2
name: g5
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_088223e3_32ab_4431_9e29_dfac26a8d683
is version of: Q940H6
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.999999951844376
initial amount: NaN
name: cSnRK2
type: Species

COPASI68
constant: true
value: 0.2
name: m32
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#d35589d9_6149_4130_89c8_a30439dfd03d
boundary condition: false
is version of: P43254
has only substance units: false
occurs in: GO:0005737
name: cCOP1c
constant: false
type: Species
initial amount: NaN
initial concentration: 0.326899984257926

W3 CDTF: Fri Mar 22 12:36:55 GMT 2013

COPASI92
constant: true
value: 17.0
name: p17
type: Parameter

COPASI4
has only substance units: false
initial amount: NaN
constant: false
encodes: Q93WK5
initial concentration: 0.401599980660701
type: Species
boundary condition: false
is version of: CHEBI:33699
name: cP7_m

http://identifiers.org/biomodels.db/BIOMD0000000445#_32e7469e_98de_42fa_be33_2703353be5b5
stoichiometry: 1.0
type: SpeciesReference

COPASI36
constant: true
value: 0.3
name: g16
type: Parameter

COPASI46
constant: true
value: 0.1
name: m10
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_67e538c9_32cb_4399_8783_e75367b500c0
constant: true
value: 2.0
name: e
type: Parameter

COPASI54
constant: true
value: 3.4
name: m18
type: Parameter

COPASI74
constant: true
value: 2.0
name: d
type: Parameter

COPASI16
constant: true
value: 0.3
name: n10
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_0fd6daf3_1e51_4c0a_8280_382f69bed6fe
stoichiometry: 1.0
type: SpeciesReference

COPASI88
constant: true
value: 0.1
name: p13
type: Parameter

COPASI111
constant: true
value: 0.0
name: lightOffset
type: Parameter

COPASI26
constant: true
value: 0.3
name: g6
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_80c36fda_417e_41b7_bffb_4ff126af0d09
is version of: Q9LKL2
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0434999979052303
initial amount: NaN
name: cT
type: Species

COPASI114
constant: true
value: 0.0
name: phase
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_80af5fac_f2d0_4460_be45_1650a781c5e1
exponent: 1.0
scale: -9
multipler: 1.0
kind: MOLE
type: SBMLUnit

COPASI185
reversible: false
name: cCOP1d_activ
is version of: MOD:00000
fast: false
type: Reaction

COPASI199
type: Reaction
reversible: false
fast: false
is version of: GO:0009299
name: cABAR_m_trscr

COPASI104
constant: true
value: 0.1
name: p29
type: Parameter

COPASI17
constant: true
value: 0.6
name: n11
type: Parameter

COPASI70
constant: true
value: 0.6
name: m34
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_4f5a93e0_23f7_408c_bb47_8b61e764e666
boundary condition: false
initial concentration: 0.999999951844376
has only substance units: false
initial amount: NaN
is version of: CHEBI:33699
type: Species
name: cABAR_m
encodes: Q9FNB0
constant: false

COPASI171
is version of: GO:0009299
fast: false
reversible: false
name: cE3_m_trscr
type: Reaction

COPASI80
constant: true
value: 1.0
name: p5
type: Parameter

COPASI113
constant: true
value: 1.0
name: lightAmplitude
type: Parameter

COPASI99
constant: true
value: 11.0
name: p24
type: Parameter

COPASI186
is version of: GO:0030163
fast: false
reversible: false
name: cCOP1d_degr
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#d05e38cf_6d0a_4f13_a994_c6a081871ccd
stoichiometry: 1.0
type: SpeciesReference

COPASI18
constant: true
value: 9.0
name: n12
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#a2ab5bce_5bdb_4524_bca1_4c5ebdf6d167
is version of: GO:0003575
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.955999953963223
initial amount: NaN
name: cP
type: Species

COPASI72
constant: true
value: 0.3
name: m36
type: Parameter

COPASI103
constant: true
value: 2.0
name: p28
type: Parameter

COPASI71
constant: true
value: 0.3
name: m35
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_33bc6ac7_485a_4992_80bc_da4080ad195d
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#e8ef6783_340a_4ffc_8595_cab0202808bb
stoichiometry: 1.0
type: SpeciesReference

COPASI81
constant: true
value: 0.2
name: p6
type: Parameter

COPASI172
is version of: GO:0006402
fast: false
reversible: false
name: cE3_m_degr
type: Reaction

COPASI187
is version of: GO:0009299
fast: false
type: Reaction
name: cG_m_trscr
reversible: false

COPASI29
constant: true
value: 0.3
name: g9
type: Parameter

COPASI9
constant: true
value: 0.29
name: n3
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#befcd01e_ef25_4966_ba31_5472b65812ee
is version of: Q9CAJ0
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.999999951844376
initial amount: NaN
name: cPP2C
type: Species

http://identifiers.org/biomodels.db/BIOMD0000000445#_13017315_49d8_49aa_a2f3_192d3685667f
constant: true
value: 0.05
name: twilightPeriod
type: Parameter

COPASI83
constant: true
value: 0.6
name: p8
type: Parameter

COPASI98
constant: true
value: 0.37
name: p23
type: Parameter

COPASI116
constant: true
value: 0.6
name: g17
type: Parameter

COPASI200
is version of: GO:0006402
fast: false
reversible: false
name: cABAR_m_degr
type: Reaction

COPASI102
constant: true
value: 0.8
name: p27
type: Parameter

COPASI19
constant: true
value: 2.0
name: n13
type: Parameter

COPASI197
is version of: GO:0006461
name: cEC_form
reversible: false
type: Reaction
fast: false

http://identifiers.org/biomodels.db/BIOMD0000000445#e8dfe520_36b1_4f49_970c_4f85292c9018
stoichiometry: 1.0
type: SpeciesReference

COPASI82
constant: true
value: 0.3
name: p7
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_2dd6b10b_163d_40d3_8d83_d90e51a60fd2
stoichiometry: 1.0
type: SpeciesReference

COPASI8
constant: true
value: 0.35
name: n2
type: Parameter

COPASI97
constant: true
value: 0.5
name: p22
type: Parameter

COPASI188
is version of: GO:0006402
fast: false
reversible: false
name: cG_m_degr
type: Reaction

COPASI115
constant: true
value: 12.0
name: photoPeriod
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_5573385e_f94e_4e2d_b3b9_58be2f1ea8d3
type: Species
encodes: P92973
boundary condition: false
name: cL_m
is version of: CHEBI:33699
constant: false
initial concentration: 1.01509995111723
encodes: Q6R0H1
has only substance units: false
initial amount: NaN

http://identifiers.org/biomodels.db/BIOMD0000000445#f2a2494e_498c_4752_9f56_179cd0b512bf
stoichiometry: 1.0
type: SpeciesReference

COPASI84
constant: true
value: 0.8
name: p9
type: Parameter

COPASI101
constant: true
value: 0.3
name: p26
type: Parameter

COPASI201
is version of: GO:0031401
fast: false
reversible: false
name: cPP2C_act
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#e9a131a8_2809_44e4_bf26_6f2a889e838d
stoichiometry: 1.0
type: SpeciesReference

COPASI198
type: Reaction
reversible: false
name: cEC_degr
is version of: GO:0030163
fast: false

http://identifiers.org/biomodels.db/BIOMD0000000445#_928a336c_92d8_42ce_9a56_3844e87bfa23
stoichiometry: 1.0
type: SpeciesReference

COPASI160
is version of: GO:0006402
fast: false
reversible: false
name: cNI_m_degr
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#e3e38df9_d7be_44d7_b7cf_6b36061a349e
is version of: Q9SQI2
constant: false
name: cEG
is version of: O82804
initial amount: NaN
type: Species
initial concentration: 0.00409999980256194
boundary condition: false
has only substance units: false

COPASI170
name: cE4_degr
fast: false
type: Reaction
is version of: GO:0030163
reversible: false

http://identifiers.org/biomodels.db/BIOMD0000000445#ae98a04b_363d_4134_a1dc_154852ae0140
has part: P92973
type: Species
constant: false
name: cL
has part: Q6R0H1
initial concentration: 0.505999975633254
has only substance units: false
boundary condition: false
initial amount: NaN

COPASI202
is version of: GO:0030163
fast: false
reversible: false
name: cPP2C_degr
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#_5b7b3546_1f82_4ef9_89c0_5ee4f40a5744
stoichiometry: 1.0
type: SpeciesReference

COPASI181
is version of: GO:0006412
fast: false
reversible: false
name: cCOP1c_trsl
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#ddee8edf_da72_4d51_a4f9_2c922eb94dce
stoichiometry: 1.0
type: SpeciesReference

COPASI195
fast: false
name: cG_cE3_assoc
type: Reaction
reversible: false
is version of: GO:0006461

http://identifiers.org/biomodels.db/BIOMD0000000445#f48e36fa_2c44_42a1_9cfe_b8749ba24655
stoichiometry: 1.0
type: SpeciesReference

COPASI118
constant: true
value: 0.4
name: g19
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_87c2c73d_954f_49a5_b379_d08d5cbc58cf
stoichiometry: 1.0
type: SpeciesReference

COPASI161
is version of: GO:0006412
fast: false
reversible: false
name: cNI_trsl
type: Reaction

COPASI175
fast: false
is version of: GO:0015031
name: cE3n_import
type: Reaction
reversible: false

COPASI108
constant: true
value: 3.0
name: q3
type: Parameter

COPASI182
is version of: GO:0030163
fast: false
reversible: false
name: cCOP1c_degr
type: Reaction

COPASI203
is version of: GO:0030163
fast: false
reversible: false
name: cSnRK2_degr
type: Reaction

COPASI196
reversible: false
type: Reaction
fast: false
is version of: GO:0030163
name: cEG_degr

http://identifiers.org/biomodels.db/BIOMD0000000445#_2310c42f_ce98_4329_a075_c7ede7d4ebf3
initial amount: NaN
is version of: CHEBI:33699
type: Species
initial concentration: 0.101699995102573
encodes: Q9SQI2
has only substance units: false
name: cG_m
constant: false
boundary condition: false

COPASI117
constant: true
value: 0.4
name: g18
type: Parameter

COPASI162
is version of: GO:0030163
fast: false
reversible: false
name: cNI_degr
type: Reaction

COPASI176
reversible: false
is version of: GO:0030163
fast: false
type: Reaction
name: cE3n_degr

COPASI107
constant: true
value: 1.56
name: q2
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#a72bc0e6_8220_4789_b902_727893ba35f8
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#de4fd5c0_5d03_42f8_aa9c_36dfcd428d31
stoichiometry: 1.0
type: SpeciesReference

COPASI183
is version of: GO:0015031
fast: false
reversible: false
name: cCOP1n_import
type: Reaction

COPASI204
is version of: GO:0031401
fast: false
reversible: false
name: cSnRK2_act
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#e4fb1952_319e_4d7a_a888_e7337e31c017
stoichiometry: 1.0
type: SpeciesReference

COPASI193
is version of: GO:0030163
fast: false
reversible: false
name: cZTL_degr
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#_1705b2dd_bac8_4402_a7d4_12dca289cd33
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#bd43a900_d3bb_4bf0_a803_31afd924876a
is version of: BTO:0000316
constant: true
size: 1.0
spatial dimensions: 3.0
name: default
type: Compartment

COPASI173
is version of: GO:0006412
fast: false
reversible: false
name: cE3_trsl
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#_334cf16b_4be9_40d1_b6ee_613aa507defd
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_3ae6ab7b_9811_4e10_8a4e_6cb3a509bf8e
boundary condition: false
name: cLUX_m
initial amount: NaN
type: Species
initial concentration: 0.101199995126651
constant: false
has only substance units: false
is version of: CHEBI:33699
encodes: F4J959

http://identifiers.org/biomodels.db/BIOMD0000000445#_6e7761b5_6f73_4bca_be66_2b67c114a816
initial concentration: 0.299099985596653
boundary condition: false
encodes: O82804
type: Species
constant: false
is version of: CHEBI:33699
name: cE3_m
initial amount: NaN
has only substance units: false

http://identifiers.org/biomodels.db/BIOMD0000000445#_2d0a3ee5_3ae2_4346_8cab_4db7abef02a0
stoichiometry: 1.0
species: COPASI3
type: SpeciesReference

COPASI106
constant: true
value: 1.0
name: q1
type: Parameter

COPASI163
type: Reaction
fast: false
name: cT_m_trscr
is version of: GO:0009299
reversible: false

COPASI105
constant: true
value: 0.9
name: p30
type: Parameter

COPASI184
is version of: GO:0030163
fast: false
reversible: false
name: cCOP1n_degr
type: Reaction

COPASI194
is version of: GO:0030163
fast: false
reversible: false
name: cZG_degr
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#_80ec7302_a2fe_49e7_a80b_370abbba3ac1
stoichiometry: 1.0
type: SpeciesReference

COPASI119
constant: true
value: 0.03
name: g20
type: Parameter

COPASI174
is version of: GO:0030163
reversible: false
type: Reaction
name: cE3_degr
fast: false

COPASI164
is version of: GO:0006402
fast: false
reversible: false
name: cT_m_degr
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#ab96bc5d_5709_4269_8085_740f5b37d223
is version of: F4J959
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.575999972262361
initial amount: NaN
name: cLUX
type: Species

http://identifiers.org/biomodels.db/BIOMD0000000445#_27a8030f_253a_49c4_85d9_8d32754c7767
stoichiometry: 1.0
type: SpeciesReference

COPASI205
name: cs_act
type: Reaction
is version of: GO:0031401
fast: false
reversible: false

http://identifiers.org/biomodels.db/BIOMD0000000445#_9825ab73_6b17_4530_bae2_401cd1433d1b
stoichiometry: 1.0
type: SpeciesReference

COPASI109
constant: false
value: 0.5
name: L
type: Parameter

COPASI166
is version of: GO:0030163
type: Reaction
fast: false
reversible: false
name: cT_degr

COPASI139
constant: true
value: 0.2
name: n19
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_4422696f_21a5_43d9_a72c_1dc9cfff1e1f
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_56da8026_863b_4da5_862b_294a11ac8c93
has only substance units: false
is version of: Q9SQI2
initial amount: NaN
is version of: Q94BT6
constant: false
type: Species
boundary condition: false
name: cZG
initial concentration: 0.0754999963642504

COPASI125
constant: true
value: 2.0
name: i
type: Parameter

COPASI179
is version of: GO:0006412
fast: false
reversible: false
name: cLUX_trsl
type: Reaction

COPASI165
is version of: GO:0006412
fast: false
reversible: false
name: cT_trsl
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#_76b80f9d_c09e_4c2d_a7f3_55411de361b5
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_6db3b482_df26_475f_bd02_5ae26fb547a9
name: volume
type: SBMLUnitsDef

http://identifiers.org/biomodels.db/BIOMD0000000445#_9aee6ce7_b675_4af2_883a_598713180f5d
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.999999951844376
initial amount: NaN
name: cs
type: Species

COPASI126
constant: true
value: 2.0
name: j
type: Parameter

COPASI178
is version of: GO:0006402
fast: false
reversible: false
name: cLUX_m_degr
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#_6116a6ae_c9f9_441b_b02c_d521058989c9
stoichiometry: 1.0
species: COPASI6
type: SpeciesReference

COPASI168
is version of: GO:0006402
fast: false
reversible: false
name: cE4_m_degr
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#_2d6f57b2_b413_4482_85d8_f8853d096344
is version of: Q9SQI2
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0195999990561498
initial amount: NaN
name: cG
type: Species

COPASI137
constant: true
value: 0.0
name: n16
type: Parameter

COPASI127
constant: true
value: 0.6
name: g23
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#df785cea_7dfe_44ba_bb50_4eafe336a9a7
stoichiometry: 1.0
type: SpeciesReference

COPASI177
fast: false
reversible: false
is version of: GO:0009299
name: cLUX_m_trscr
type: Reaction

COPASI128
constant: true
value: 0.3
name: g24
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_4ba3af31_89e1_4b19_ba84_93062293db2d
stoichiometry: 1.0
type: SpeciesReference

COPASI167
is version of: GO:0009299
type: Reaction
name: cE4_m_trscr
fast: false
reversible: false

COPASI138
constant: true
value: 0.5
name: n17
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_58f5bfba_5fac_44e6_b063_8b2827c9f41b
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_2adf9cf9_c642_47ca_80b5_b8e791e65086
constant: true
value: 2.0
name: c
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_790df144_e6fe_4edc_ac3a_96d46d82e151
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_9faa9fa3_0773_40fa_b394_ab10ad0d39ee
stoichiometry: 1.0
type: SpeciesReference

COPASI129
constant: true
value: 0.5
name: g25
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#b19cd933_7635_4879_9185_5224774092d7
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_37bbe381_18f1_4af9_b33c_8cc54eaf1585
is version of: Q93WK5
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.116699994380239
initial amount: NaN
name: cP7
type: Species

http://identifiers.org/biomodels.db/BIOMD0000000445#_5f3901ae_162b_4e56_8313_03a135586b37
constant: true
value: 2.0
name: b
type: Parameter

COPASI149
is version of: GO:0006412
fast: false
reversible: false
name: cP_trsl
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#_974e65c1_dc17_46fc_b933_e08e48977abd
constant: true
value: 1.0
name: A0
type: Parameter

COPASI169
is version of: GO:0006412
fast: false
reversible: false
name: cE4_trsl
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#_0db8bc5c_c26e_437a_a1fb_7df69f6f10de
is version of: Q8L500
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0237999988538961
initial amount: NaN
name: cP9
type: Species

http://identifiers.org/biomodels.db/BIOMD0000000445#_6992465a_f07a_406a_8844_81c1ca9c9f4b
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_8e41ba09_f051_45f7_a541_6a4e47e6b173
stoichiometry: 1.0
type: SpeciesReference

COPASI189
is version of: GO:0006412
fast: false
reversible: false
name: cG_trsl
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#cac818fe_6caa_4895_a862_01d5de6f32e3
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_4c0852bf_0778_4c71_9bf2_f6f0eb998df4
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_631f958e_833e_4938_bf78_e0608b7efac1
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#d22498c7_2d71_444b_9b5f_0bb0fcb25757
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_662cc91b_75b8_4ef1_ba16_97c2ed52d06f
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_3ea8168a_ce37_4072_885f_9a1e1afd1852
stoichiometry: 1.0
species: COPASI5
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_42a50a75_218b_41dc_b62b_5ae14b722e7b
stoichiometry: 1.0
species: COPASI6
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_9bc86e23_aafc_443f_8288_8b22edc79097
stoichiometry: 1.0
species: COPASI2
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_58b6ee70_adf0_4732_ab1b_db3ca7e1e784
stoichiometry: 1.0
species: COPASI6
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#da27503a_d873_4e13_be63_db2d5bee6b91
stoichiometry: 1.0
species: COPASI4
type: SpeciesReference

COPASI131
constant: true
value: 0.2
name: g27
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_9812fe02_9a96_4549_b48f_c39d72ddf966
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_16e24678_79e1_4727_aab9_f9636f231c70
stoichiometry: 1.0
type: SpeciesReference

COPASI145
is version of: GO:0006412
fast: false
reversible: false
name: cL_trsl
type: Reaction

COPASI44
constant: true
value: 0.5
name: m8
type: Parameter

COPASI159
fast: false
name: cNI_m_trscr
is version of: GO:0009299
reversible: false
type: Reaction

COPASI30
constant: true
value: 0.5
name: g10
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#bc3d55ea_65ce_4f95_b7a7_17f07367bd2b
stoichiometry: 1.0
type: SpeciesReference

COPASI132
constant: true
value: 0.1
name: g28
type: Parameter

COPASI43
constant: true
value: 0.1
name: m7
type: Parameter

COPASI146
is version of: GO:0030163
fast: false
reversible: false
name: cL_degr
type: Reaction

COPASI69
constant: true
value: 13.0
name: m33
type: Parameter

COPASI59
constant: true
value: 0.5
name: m23
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_690a9d3b_73ac_443e_bd6c_331a46f0e004
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#d18807f7_0d9e_4fbc_93f1_aba9becc3598
stoichiometry: 1.0
species: COPASI2
type: SpeciesReference

COPASI42
constant: true
value: 0.2
name: m6
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#bee5253b_72f8_4770_8dd6_437791837d1e
exponent: 1.0
scale: -6
multipler: 1.0
kind: LITRE
type: SBMLUnit

COPASI147
is version of: MOD:00000
fast: false
reversible: false
name: cL_modif
type: Reaction

COPASI32
constant: true
value: 0.1
name: g12
type: Parameter

COPASI157
is version of: GO:0006412
fast: false
reversible: false
name: cP7_trsl
type: Reaction

COPASI58
constant: true
value: 0.1
name: m22
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_5168ee5f_2718_4c5a_a063_476272bd7d8a
stoichiometry: 1.0
species: COPASI5
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_6cd05dc7_7e5b_4a7f_805a_5685350e4487
stoichiometry: 1.0
species: COPASI3
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#_6003d00c_6697_432b_9d3f_a3d479d9da87
stoichiometry: 1.0
type: SpeciesReference

COPASI120
constant: true
value: 0.4
name: g21
type: Parameter

COPASI130
constant: true
value: 0.3
name: g26
type: Parameter

COPASI57
constant: true
value: 0.08
name: m21
type: Parameter

COPASI148
is version of: GO:0030163
fast: false
reversible: false
name: cLm_degr
type: Reaction

COPASI41
constant: true
value: 0.3
name: m5
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_650a71f1_9929_440f_a6c1_e76f75d51524
constant: true
value: 0.0
name: quantity
type: Parameter

COPASI158
is version of: GO:0030163
fast: false
reversible: false
name: cP7_degr
type: Reaction

COPASI31
constant: true
value: 0.7
name: g11
type: Parameter

COPASI121
constant: true
value: 0.1
name: g22
type: Parameter

COPASI20
constant: true
value: 0.1
name: n14
type: Parameter

COPASI135
constant: true
value: 0.2
name: m39
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_58e17565_837e_41e5_bd76_4b151ee2d1b0
stoichiometry: 1.0
type: SpeciesReference

COPASI141
constant: true
value: 0.1
name: p32
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_2dbf955e_f4f8_403b_a8be_d0d3f52601b8
stoichiometry: 1.0
type: SpeciesReference

COPASI155
name: cP7_m_trscr
type: Reaction
fast: false
reversible: false
is version of: GO:0009299

COPASI40
constant: true
value: 0.2
name: m4
type: Parameter

COPASI122
constant: true
value: 2.0
name: g
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#f61a0c08_24b1_4c60_9b17_54db6b8ef483
stoichiometry: 1.0
type: SpeciesReference

COPASI136
constant: true
value: 0.5
name: n18
type: Parameter

COPASI156
is version of: GO:0006402
fast: false
reversible: false
name: cP7_m_degr
type: Reaction

COPASI142
constant: true
value: 0.2
name: p33
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#d615e584_427c_4587_81b7_c6ce3d47b6e2
stoichiometry: 1.0
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000445#de1a0e2a_407e_4fdb_97be_2466cc57ca81
initial amount: NaN
boundary condition: false
name: cE4_m
encodes: O04211
is version of: CHEBI:33699
has only substance units: false
type: Species
initial concentration: 0.101199995126651
constant: false

COPASI123
constant: true
value: 2.0
name: n15
type: Parameter

COPASI133
constant: true
value: 1.0
name: g29
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#_5ed63195_a30f_4f97_9d59_c57150413bb9
stoichiometry: 1.0
type: SpeciesReference

COPASI153
is version of: GO:0006412
fast: false
reversible: false
name: cP9_trsl
type: Reaction

COPASI206
is version of: GO:0030163
fast: false
reversible: false
name: cs_degr
type: Reaction

COPASI143
type: Reaction
is version of: GO:0009299
name: cL_m_trscr
reversible: false
fast: false

COPASI124
constant: true
value: 2.0
name: h
type: Parameter

COPASI134
constant: true
value: 0.3
name: m38
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000445#c02a8eb2_0dab_456a_be5d_2e9be13a1d0d
stoichiometry: 1.0
species: COPASI4
type: SpeciesReference

COPASI154
is version of: GO:0030163
fast: false
reversible: false
name: cP9_degr
type: Reaction

http://identifiers.org/biomodels.db/BIOMD0000000445#_1cbc34e2_3a79_45ba_89de_13bf60b7aecc
stoichiometry: 1.0
type: SpeciesReference

COPASI144
is version of: GO:0006402
fast: false
reversible: false
name: cL_m_degr
type: Reaction

ORG:
  orgname: EMBL-EBI
n:
  given: Vijayalakshmi
  family: Chelliah