cLUX m
type: Species
has only substance units: false
is version of: CHEBI:33699
constant: false
is: SBO:0000278
name: cLUX_m
encodes: F4J959
boundary condition: false
in compartment: def
initial amount: NaN
initial concentration: 0.1012

cZTL degr
kinetic law: CDMT00206
product: CDMT00205
reactant: CDMT00204
is version of: GO:0030163
fast: false
reversible: false
name: cZTL_degr
type: Reaction

CDMT00110
stoichiometry: 1.0
species: s28
type: SpeciesReference

CDMT00120
stoichiometry: 1.0
species: cE3 m
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000412#a
constant: true
value: 2.0
name: a
type: Parameter

parameter 4
constant: true
units: time
value: 1.0
name: lightAmplitude
type: Parameter

cE3 m degr
kinetic law: CDMT00122
product: CDMT00121
reactant: CDMT00120
is version of: GO:0006402
fast: false
reversible: false
name: cE3_m_degr
type: Reaction

s10
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s10
type: Species

s20
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s20
type: Species

cNI m
is version of: CHEBI:33699
type: Species
initial amount: NaN
boundary condition: false
name: cNI_m
encodes: Q9LVG4
constant: false
initial concentration: 0.0731
is: SBO:0000278
in compartment: def
has only substance units: false

CDMT00150
stoichiometry: 1.0
species: s36
type: SpeciesReference

parameter 5
constant: true
units: time
value: 0.0
name: phase
type: Parameter

s40
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s40
type: Species

cCOP1n import
kinetic law: CDMT00169
product: CDMT00168
reactant: CDMT00167
is version of: GO:0015031
fast: false
reversible: false
name: cCOP1n_import
type: Reaction

s30
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s30
type: Species

s21
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s21
type: Species

parameter 6
constant: true
units: time
value: 0.05
name: twilightPeriod
type: Parameter

s41
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s41
type: Species

cE3
initial amount: NaN
is: SBO:0000252
in compartment: def
type: Species
name: cE3
is version of: O82804
initial concentration: 0.1503
constant: false
has only substance units: false
boundary condition: false

CDMT00161
stoichiometry: 1.0
species: s38
type: SpeciesReference

cL
initial amount: NaN
is: SBO:0000297
has only substance units: false
in compartment: def
has part: Q6R0H1
type: Species
boundary condition: false
has part: P92973
name: cL
constant: false
initial concentration: 0.506

CDMT00208
stoichiometry: 1.0
species: s48
type: SpeciesReference

CDMT00121
stoichiometry: 1.0
species: s30
type: SpeciesReference

cG cZTL assoc
kinetic law: CDMT00200
product: CDMT00199
reactant: CDMT00198
reactant: CDMT00197
is version of: GO:0006461
fast: false
reversible: true
name: cG_cZTL_assoc
type: Reaction

s22
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s22
type: Species

s23
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s23
type: Species

parameter 7
constant: true
units: time
value: 12.0
name: photoPeriod
type: Parameter

s42
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s42
type: Species

CDMT00162
stoichiometry: 1.0
species: cCOP1c
type: SpeciesReference

cNI degr
kinetic law: CDMT00079
product: CDMT00078
reactant: CDMT00077
is version of: GO:0030163
fast: false
reversible: false
name: cNI_degr
type: Reaction

CDMT00207
stoichiometry: 1.0
species: cZG
type: SpeciesReference

cG m
is version of: CHEBI:33699
encodes: Q9SQI2
type: Species
constant: false
boundary condition: false
name: cG_m
initial amount: NaN
is: SBO:0000278
has only substance units: false
initial concentration: 0.1017
in compartment: def

s34
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s34
type: Species

cT
name: cT
type: Species
has only substance units: false
in compartment: def
is version of: Q9LKL2
constant: false
initial amount: NaN
is: SBO:0000252
initial concentration: 0.0435
boundary condition: false

s33
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s33
type: Species

s43
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s43
type: Species

cEC form
modifier: CDMT00225
modifier: CDMT00226
reactant: CDMT00222
type: Reaction
kinetic law: CDMT00229
modifier: CDMT00224
is version of: GO:0006461
product: CDMT00223
modifier: CDMT00228
reversible: false
modifier: CDMT00227
name: cEC_form
fast: false

s45
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s45
type: Species

s35
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s35
type: Species

cNI trsl
kinetic law: CDMT00076
modifier: CDMT00075
product: CDMT00074
reactant: CDMT00073
is version of: GO:0006412
fast: false
reversible: false
name: cNI_trsl
type: Reaction

area
unit: CDMT00241
name: area
type: SBMLUnitsDef

cE4
initial concentration: 0.207
has only substance units: false
initial amount: NaN
type: Species
name: cE4
is: SBO:0000252
in compartment: def
constant: false
is version of: O04211
boundary condition: false

cE3 degr
kinetic law: CDMT00130
modifier: CDMT00129
product: CDMT00128
reactant: CDMT00127
is version of: GO:0030163
fast: false
reversible: false
name: cE3_degr
type: Reaction

s44
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s44
type: Species

cCOP1n degr
kinetic law: CDMT00172
product: CDMT00171
reactant: CDMT00170
is version of: GO:0030163
fast: false
reversible: false
name: cCOP1n_degr
type: Reaction

s46
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s46
type: Species

CDMT00205
stoichiometry: 1.0
species: s47
type: SpeciesReference

cNI m trscr
product: CDMT00066
reversible: false
fast: false
is version of: GO:0009299
modifier: CDMT00067
kinetic law: CDMT00069
name: cNI_m_trscr
type: Reaction
reactant: CDMT00065
modifier: CDMT00068

cE4 trsl
kinetic law: CDMT00108
modifier: CDMT00107
product: CDMT00106
reactant: CDMT00105
is version of: GO:0006412
fast: false
reversible: false
name: cE4_trsl
type: Reaction

s1
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s1
type: Species

s31
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s31
type: Species

cP9 degr
kinetic law: CDMT00048
product: CDMT00047
reactant: CDMT00046
is version of: GO:0030163
fast: false
reversible: false
name: cP9_degr
type: Reaction

cP7 trsl
kinetic law: CDMT00061
modifier: CDMT00060
product: CDMT00059
reactant: CDMT00058
is version of: GO:0006412
fast: false
reversible: false
name: cP7_trsl
type: Reaction

CDMT00204
stoichiometry: 1.0
species: cZTL
type: SpeciesReference

s47
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s47
type: Species

cCOP1c degr
kinetic law: CDMT00166
product: CDMT00165
reactant: CDMT00164
is version of: GO:0030163
fast: false
reversible: false
name: cCOP1c_degr
type: Reaction

cP
has only substance units: false
initial concentration: 0.956
name: cP
boundary condition: false
is: SBO:0000252
type: Species
in compartment: def
initial amount: NaN
constant: false
is version of: GO:0003675

s2
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s2
type: Species

s32
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s32
type: Species

W3 CDTF: Tue Feb 12 15:40:34 GMT 2013

cCOP1c trsl
kinetic law: CDMT00163
product: CDMT00162
reactant: CDMT00161
is version of: GO:0006412
fast: false
reversible: false
name: cCOP1c_trsl
type: Reaction

s28
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s28
type: Species

n11
constant: true
value: 0.6
name: n11
type: Parameter

p3
constant: true
value: 0.1
name: p3
type: Parameter

p25
constant: true
value: 8.0
name: p25
type: Parameter

cP7 m degr
kinetic law: CDMT00057
product: CDMT00056
reactant: CDMT00055
is version of: GO:0006402
fast: false
reversible: false
name: cP7_m_degr
type: Reaction

CDMT00093
stoichiometry: 1.0
species: s24
type: SpeciesReference

g3
constant: true
value: 0.6
name: g3
type: Parameter

CDMT00167
stoichiometry: 1.0
species: cCOP1c
type: SpeciesReference

s18
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s18
type: Species

q3
constant: true
value: 2.8
name: q3
type: Parameter

s3
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s3
type: Species

ORG:
  orgname: EMBL-EBI
n:
  given: Vijayalakshmi
  family: Chelliah

s38
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s38
type: Species

cP7
type: Species
is version of: Q93WK5
constant: false
initial concentration: 0.1167
in compartment: def
initial amount: NaN
has only substance units: false
boundary condition: false
name: cP7
is: SBO:0000252

cLUX degr
modifier: CDMT00158
fast: false
reversible: false
modifier: CDMT00157
product: CDMT00155
name: cLUX_degr
type: Reaction
is version of: GO:0030163
reactant: CDMT00154
modifier: CDMT00159
modifier: CDMT00156
kinetic law: CDMT00160

p26
constant: true
value: 0.3
name: p26
type: Parameter

s48
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s48
type: Species

CDMT00003
stoichiometry: 1.0
species: cL m
type: SpeciesReference

p24
constant: true
value: 10.0
name: p24
type: Parameter

n10
constant: true
value: 0.4
name: n10
type: Parameter

s29
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s29
type: Species

p4
constant: true
value: 0.56
name: p4
type: Parameter

cCOP1n
boundary condition: false
type: Species
is: SBO:0000252
is version of: P43254
initial amount: NaN
has only substance units: false
occurs in: GO:0005634
name: cCOP1n
in compartment: def
initial concentration: 0.65
constant: false

CDMT00092
stoichiometry: 1.0
species: cT
type: SpeciesReference

cP9 m trscr
modifier: CDMT00036
product: CDMT00034
modifier: CDMT00035
kinetic law: CDMT00038
name: cP9_m_trscr
type: Reaction
is version of: GO:0009299
reversible: false
reactant: CDMT00033
fast: false
modifier: CDMT00037

CDMT00168
stoichiometry: 1.0
species: cCOP1n
type: SpeciesReference

g4
constant: true
value: 0.01
name: g4
type: Parameter

s19
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s19
type: Species

CDMT00242
exponent: 1.0
scale: 0
multipler: 1.0
kind: METRE
type: SBMLUnit

p19
constant: true
value: 1.0
name: p19
type: Parameter

s4
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s4
type: Species

g5
constant: true
value: 0.15
name: g5
type: Parameter

s39
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s39
type: Species

s49
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s49
type: Species

CDMT00002
stoichiometry: 1.0
species: s1
type: SpeciesReference

CDMT00202
stoichiometry: 1.0
species: cZTL
type: SpeciesReference

COPASI10
constant: true
units: time
value: 24.0
name: cyclePeriod
type: Parameter

p1
constant: true
value: 0.13
name: p1
type: Parameter

CDMT00155
stoichiometry: 1.0
species: s37
type: SpeciesReference

n13
constant: true
value: 1.3
name: n13
type: Parameter

cT m degr
kinetic law: CDMT00087
product: CDMT00086
reactant: CDMT00085
is version of: GO:0006402
fast: false
reversible: false
name: cT_m_degr
type: Reaction

BIOMD0000000412
species: s10
parameter: p19
reaction: cE4 trsl
species: s45
parameter: g6
function def: function 4 cE3 m trscr
reaction: cZTL degr
species: cLm
name: function_4_cNI_m_trscr
parameter: g2
species: cE3
function def: function 4 cCOP1n import
reaction: cL modif
parameter: p28
parameter: n6
substance units: substance
occurs in: http://identifiers.org/taxonomy/3702
species: s24
parameter: m28
species: cEG
parameter: m34
reaction: cG cE3 assoc
species: s22
name: function_4_cL_m_degr
name: function_4_cEC_degr
function def: function 4 cCOP1d activ
reaction: cP9 m degr
parameter: n9
reaction: cCOP1n import
function def: function 4 cEC degr
function def: function 4 cZG degr
function def: function 4 cCOP1c trsl
parameter: m37
parameter: p2
function def: function 4 cCOP1n degr
function def: function 4 cE3 degr
length unit: length
species: s25
species: s16
function def: function 4 cP7 m trscr
species: s37
parameter: p16
parameter: m4
parameter: http://identifiers.org/biomodels.db/BIOMD0000000412#a
parameter: g13
name: function_4_cP9_m_degr
parameter: m16
parameter: m22
function def: function 4 cLUX m degr
function def: function 4 cLUX m trscr
function def: function 4 cE3n import
parameter: COPASI10
function def: function 4 cP9 m trscr 1
parameter: q1
parameter: p7
name: function_4_cZTL_trsl
name: function_4_cT_degr
parameter: m7
parameter: http://identifiers.org/biomodels.db/BIOMD0000000412#n3
reaction: cE3 degr
name: function_4_cCOP1c_trsl
parameter: g16
parameter: parameter 5
species: s38
parameter: m25
parameter: m31
function def: function 4 cZTL trsl
name: function_4_cP9_trsl
species: s28
parameter: p21
parameter: n13
name: function_4_cP7_degr
parameter: COPASI2
parameter: m10
parameter: COPASI9
species: s34
parameter: g4
name: function_4_cL_modif
name: function_4_cP_trsl
reaction: cLUX degr

s16
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s16
type: Species

CDMT00241
exponent: 2.0
scale: 0
multipler: 1.0
kind: METRE
type: SBMLUnit

CDMT00081
stoichiometry: 1.0
species: cT m
type: SpeciesReference

p18
constant: true
value: 4.0
name: p18
type: Parameter

cP7 m trscr
modifier: CDMT00053
is version of: GO:0009299
type: Reaction
kinetic law: CDMT00054
name: cP7_m_trscr
reactant: CDMT00049
reversible: false
modifier: CDMT00052
modifier: CDMT00051
product: CDMT00050
fast: false

cEC degr
modifier: CDMT00234
is version of: GO:0030163
modifier: CDMT00235
type: Reaction
kinetic law: CDMT00237
product: CDMT00231
reversible: false
modifier: CDMT00236
modifier: CDMT00233
fast: false
reactant: CDMT00230
modifier: CDMT00232
name: cEC_degr

s5
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s5
type: Species

cP9
has only substance units: false
is: SBO:0000252
initial amount: NaN
boundary condition: false
type: Species
in compartment: def
initial concentration: 0.0238
constant: false
is version of: Q8L500
name: cP9

g6
constant: true
value: 0.3
name: g6
type: Parameter

CDMT00201
stoichiometry: 1.0
species: s46
type: SpeciesReference

s36
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s36
type: Species

p28
constant: true
value: 2.0
name: p28
type: Parameter

CDMT00018
stoichiometry: 1.0
species: s4
type: SpeciesReference

p2
constant: true
value: 0.27
name: p2
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000412#f
constant: true
value: 2.0
name: f
type: Parameter

n12
constant: true
value: 12.5
name: n12
type: Parameter

s17
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s17
type: Species

p17
constant: true
value: 4.8
name: p17
type: Parameter

CDMT00240
exponent: 1.0
scale: -9
multipler: 1.0
kind: MOLE
type: SBMLUnit

CDMT00080
stoichiometry: 1.0
species: s21
type: SpeciesReference

CDMT00142
stoichiometry: 1.0
species: s34
type: SpeciesReference

s6
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s6
type: Species

g7
constant: true
value: 0.6
name: g7
type: Parameter

s37
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s37
type: Species

cEG degr
kinetic law: CDMT00221
type: Reaction
reactant: CDMT00214
modifier: CDMT00219
modifier: CDMT00216
reversible: false
name: cEG_degr
modifier: CDMT00217
fast: false
product: CDMT00215
modifier: CDMT00218
is version of: GO:0030163
modifier: CDMT00220

p27
constant: true
value: 0.8
name: p27
type: Parameter

p16
constant: true
value: 0.62
name: p16
type: Parameter

CDMT00027
stoichiometry: 1.0
species: s7
type: SpeciesReference

cP9 trsl
kinetic law: CDMT00045
modifier: CDMT00044
product: CDMT00043
reactant: CDMT00042
is version of: GO:0006412
fast: false
reversible: false
name: cP9_trsl
type: Reaction

s14
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s14
type: Species

http://identifiers.org/biomodels.db/BIOMD0000000412#e
constant: true
value: 2.0
name: e
type: Parameter

s24
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s24
type: Species

CDMT00017
stoichiometry: 1.0
species: cL
type: SpeciesReference

cL degr
kinetic law: CDMT00019
product: CDMT00018
reactant: CDMT00017
is version of: GO:0030163
fast: false
reversible: false
name: cL_degr
type: Reaction

CDMT00143
stoichiometry: 1.0
species: cLUX m
type: SpeciesReference

g8
constant: true
value: 0.01
name: g8
type: Parameter

s7
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s7
type: Species

s15
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s15
type: Species

p15
constant: true
value: 3.0
name: p15
type: Parameter

CDMT00164
stoichiometry: 1.0
species: cCOP1c
type: SpeciesReference

CDMT00039
stoichiometry: 1.0
species: cP9 m
type: SpeciesReference

cT trsl
kinetic law: CDMT00091
modifier: CDMT00090
product: CDMT00089
reactant: CDMT00088
is version of: GO:0006412
fast: false
reversible: false
name: cT_trsl
type: Reaction

n14
constant: true
value: 0.1
name: n14
type: Parameter

s25
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s25
type: Species

CDMT00154
stoichiometry: 1.0
species: cLUX
type: SpeciesReference

CDMT00134
stoichiometry: 1.0
species: cE3n
type: SpeciesReference

p29
constant: true
value: 0.1
name: p29
type: Parameter

cP9 m degr
kinetic law: CDMT00041
product: CDMT00040
reactant: CDMT00039
is version of: GO:0006402
fast: false
reversible: false
name: cP9_m_degr
type: Reaction

g9
constant: true
value: 0.3
name: g9
type: Parameter

p14
constant: true
value: 0.14
name: p14
type: Parameter

s8
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s8
type: Species

q1
constant: true
value: 1.2
name: q1
type: Parameter

s12
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s12
type: Species

CDMT00165
stoichiometry: 1.0
species: s39
type: SpeciesReference

cE4 m trscr
name: cE4_m_trscr
modifier: CDMT00099
reactant: CDMT00097
fast: false
type: Reaction
product: CDMT00098
modifier: CDMT00100
kinetic law: CDMT00101
is version of: GO:0009299
reversible: false

s26
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s26
type: Species

CDMT00151
stoichiometry: 1.0
species: cLUX
type: SpeciesReference

cE4 degr
modifier: CDMT00112
product: CDMT00110
type: Reaction
modifier: CDMT00114
is version of: GO:0030163
modifier: CDMT00113
name: cE4_degr
fast: false
reversible: false
kinetic law: CDMT00115
modifier: CDMT00111
reactant: CDMT00109

http://identifiers.org/biomodels.db/BIOMD0000000412#c
constant: true
value: 2.0
name: c
type: Parameter

CDMT00131
stoichiometry: 1.0
species: cE3
type: SpeciesReference

s9
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s9
type: Species

CDMT00231
stoichiometry: 1.0
species: s51
type: SpeciesReference

p13
constant: true
value: 0.1
name: p13
type: Parameter

s11
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s11
type: Species

cCOP1d activ
kinetic law: CDMT00176
modifier: CDMT00175
product: CDMT00174
reactant: CDMT00173
is version of: MOD:00000
fast: false
reversible: false
name: cCOP1d_activ
type: Reaction

CDMT00028
stoichiometry: 1.0
species: cP
type: SpeciesReference

CDMT00014
stoichiometry: 1.0
species: cL
type: SpeciesReference

cG m trscr
fast: false
kinetic law: CDMT00185
reactant: CDMT00180
type: Reaction
modifier: CDMT00184
product: CDMT00181
is version of: GO:0009299
name: cG_m_trscr
reversible: false
modifier: CDMT00183
modifier: CDMT00182

q2
constant: true
value: 1.56
name: q2
type: Parameter

s13
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s13
type: Species

cCOP1d degr
kinetic law: CDMT00179
product: CDMT00178
reactant: CDMT00177
is version of: GO:0030163
fast: false
reversible: false
name: cCOP1d_degr
type: Reaction

s51
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s51
type: Species

s27
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s27
type: Species

CDMT00132
stoichiometry: 1.0
species: cE3n
type: SpeciesReference

CDMT00230
stoichiometry: 1.0
species: cEC
type: SpeciesReference

http://identifiers.org/biomodels.db/BIOMD0000000412#b
constant: true
value: 2.0
name: b
type: Parameter

CDMT00190
stoichiometry: 1.0
species: cG
type: SpeciesReference

p12
constant: true
value: 3.4
name: p12
type: Parameter

p22
constant: true
value: 0.5
name: p22
type: Parameter

CDMT00086
stoichiometry: 1.0
species: s22
type: SpeciesReference

CDMT00210
stoichiometry: 1.0
species: cE3
type: SpeciesReference

cEG
constant: false
in compartment: def
initial concentration: 0.0041
has only substance units: false
type: Species
boundary condition: false
initial amount: NaN
is: SBO:0000297
name: cEG
is version of: O82804
is version of: Q9SQI2

CDMT00186
stoichiometry: 1.0
species: cG m
type: SpeciesReference

cE4 m degr
kinetic law: CDMT00104
product: CDMT00103
reactant: CDMT00102
is version of: GO:0006402
fast: false
reversible: false
name: cE4_m_degr
type: Reaction

CDMT00034
stoichiometry: 1.0
species: cP9 m
type: SpeciesReference

CDMT00238
exponent: 1.0
scale: -6
multipler: 1.0
kind: LITRE
type: SBMLUnit

m9
constant: true
value: 1.1
name: m9
type: Parameter

CDMT00047
stoichiometry: 1.0
species: s12
type: SpeciesReference

n9
constant: true
value: 0.2
name: n9
type: Parameter

m13
constant: true
value: 0.32
name: m13
type: Parameter

cL trsl
kinetic law: CDMT00016
modifier: CDMT00015
product: CDMT00014
reactant: CDMT00013
is version of: GO:0006412
fast: false
reversible: false
name: cL_trsl
type: Reaction

CDMT00024
stoichiometry: 1.0
species: cLm
type: SpeciesReference

CDMT00211
stoichiometry: 1.0
species: cG
type: SpeciesReference

p23
constant: true
value: 0.37
name: p23
type: Parameter

CDMT00135
stoichiometry: 1.0
species: s33
type: SpeciesReference

cG degr
kinetic law: CDMT00196
modifier: CDMT00195
product: CDMT00194
reactant: CDMT00193
is version of: GO:0030163
fast: false
reversible: false
name: cG_degr
type: Reaction

cLUX m trscr
name: cLUX_m_trscr
reversible: false
is version of: GO:0009299
reactant: CDMT00142
type: Reaction
product: CDMT00143
kinetic law: CDMT00146
modifier: CDMT00144
fast: false
modifier: CDMT00145

CDMT00066
stoichiometry: 1.0
species: cNI m
type: SpeciesReference

CDMT00239
exponent: 1.0
scale: 0
multipler: 3600.0
kind: SECOND
type: SBMLUnit

CDMT00046
stoichiometry: 1.0
species: cP9
type: SpeciesReference

p9
constant: true
value: 0.8
name: p9
type: Parameter

CDMT00171
stoichiometry: 1.0
species: s40
type: SpeciesReference

m14
constant: true
value: 0.4
name: m14
type: Parameter

COPASI9
constant: true
units: time
value: 0.0
name: lightOffset
type: Parameter

CDMT00025
stoichiometry: 1.0
species: s6
type: SpeciesReference

CDMT00088
stoichiometry: 1.0
species: s23
type: SpeciesReference

p20
constant: true
value: 0.1
name: p20
type: Parameter

CDMT00222
stoichiometry: 1.0
species: s50
type: SpeciesReference

CDMT00098
stoichiometry: 1.0
species: cE4 m
type: SpeciesReference

def
is version of: GO:0005623
is: SBO:0000290
constant: true
units: volume
size: 1.0
spatial dimensions: 3.0
name: def
type: Compartment

CDMT00174
stoichiometry: 1.0
species: cCOP1d
type: SpeciesReference

p10
constant: true
value: 0.54
name: p10
type: Parameter

CDMT00124
stoichiometry: 1.0
species: cE3
type: SpeciesReference

CDMT00059
stoichiometry: 1.0
species: cP7
type: SpeciesReference

m7
constant: true
value: 0.7
name: m7
type: Parameter

p30
constant: true
value: 0.9
name: p30
type: Parameter

CDMT00194
stoichiometry: 1.0
species: s45
type: SpeciesReference

ORG:
  orgname: Edinburgh University
n:
  given: Alexandra
  family: Pokhilko

CDMT00049
stoichiometry: 1.0
species: s13
type: SpeciesReference

cT degr
modifier: CDMT00094
type: Reaction
product: CDMT00093
is version of: GO:0030163
reversible: false
reactant: CDMT00092
kinetic law: CDMT00096
name: cT_degr
modifier: CDMT00095
fast: false

cZTL
is: SBO:0000252
boundary condition: false
initial amount: NaN
has only substance units: false
is version of: Q94BT6
constant: false
type: Species
initial concentration: 0.2505
in compartment: def
name: cZTL

m15
constant: true
value: 0.7
name: m15
type: Parameter

p21
constant: true
value: 1.0
name: p21
type: Parameter

CDMT00089
stoichiometry: 1.0
species: cT
type: SpeciesReference

cLUX m degr
kinetic law: CDMT00149
product: CDMT00148
reactant: CDMT00147
is version of: GO:0006402
fast: false
reversible: false
name: cLUX_m_degr
type: Reaction

cL m trscr
modifier: CDMT00008
name: cL_m_trscr
modifier: CDMT00007
is version of: GO:0009299
modifier: CDMT00006
modifier: CDMT00005
product: CDMT00003
fast: false
modifier: CDMT00004
reversible: false
kinetic law: CDMT00009
type: Reaction
reactant: CDMT00002

CDMT00078
stoichiometry: 1.0
species: s20
type: SpeciesReference

CDMT00193
stoichiometry: 1.0
species: cG
type: SpeciesReference

CDMT00223
stoichiometry: 1.0
species: cEC
type: SpeciesReference

p11
constant: true
value: 0.51
name: p11
type: Parameter

CDMT00173
stoichiometry: 1.0
species: cCOP1n
type: SpeciesReference

CDMT00123
stoichiometry: 1.0
species: s31
type: SpeciesReference

m8
constant: true
value: 0.4
name: m8
type: Parameter

p31
constant: true
value: 0.1
name: p31
type: Parameter

CDMT00058
stoichiometry: 1.0
species: s15
type: SpeciesReference

m16
constant: true
value: 0.5
name: m16
type: Parameter

cNI
initial amount: NaN
type: Species
initial concentration: 0.0697
in compartment: def
is: SBO:0000252
has only substance units: false
constant: false
name: cNI
boundary condition: false
is version of: Q6LA42

CDMT00109
stoichiometry: 1.0
species: cE4
type: SpeciesReference

m27
constant: true
value: 0.1
name: m27
type: Parameter

CDMT00010
stoichiometry: 1.0
species: cL m
type: SpeciesReference

CDMT00214
stoichiometry: 1.0
species: cEG
type: SpeciesReference

cG cE3 assoc
kinetic law: CDMT00213
product: CDMT00212
reactant: CDMT00211
reactant: CDMT00210
is version of: GO:0006461
fast: false
reversible: false
name: cG_cE3_assoc
type: Reaction

m37
constant: true
value: 0.8
name: m37
type: Parameter

COPASI6
constant: true
units: time
value: 0.0
name: D
type: Parameter

m18
constant: true
value: 3.4
name: m18
type: Parameter

m17
constant: true
value: 0.5
name: m17
type: Parameter

CDMT00020
stoichiometry: 1.0
species: s5
type: SpeciesReference

cEC
in compartment: def
constant: false
has part: O82804
initial concentration: 0.0709
has part: F4J959
type: Species
has only substance units: false
initial amount: NaN
is: SBO:0000297
boundary condition: false
has part: O04211
name: cEC

cL m degr
kinetic law: CDMT00012
product: CDMT00011
reactant: CDMT00010
is version of: GO:0006402
fast: false
reversible: false
name: cL_m_degr
type: Reaction

CDMT00043
stoichiometry: 1.0
species: cP9
type: SpeciesReference

CDMT00030
stoichiometry: 1.0
species: cP
type: SpeciesReference

p6
constant: true
value: 0.6
name: p6
type: Parameter

CDMT00011
stoichiometry: 1.0
species: s2
type: SpeciesReference

CDMT00097
stoichiometry: 1.0
species: s25
type: SpeciesReference

m28
constant: true
value: 20.0
name: m28
type: Parameter

CDMT00215
stoichiometry: 1.0
species: s49
type: SpeciesReference

cL m
type: Species
encodes: Q6R0H1
in compartment: def
boundary condition: false
initial amount: NaN
name: cL_m
is version of: CHEBI:33699
constant: false
encodes: P92973
initial concentration: 1.0151
has only substance units: false
is: SBO:0000278

cP trsl
kinetic law: CDMT00029
product: CDMT00028
reactant: CDMT00027
is version of: GO:0006412
fast: false
reversible: false
name: cP_trsl
type: Reaction

m38
constant: true
value: 0.5
name: m38
type: Parameter

m19
constant: true
value: 0.2
name: m19
type: Parameter

default
is version of: BTO:0000316
is: SBO:0000290
constant: true
units: volume
size: 1.0
spatial dimensions: 3.0
type: Compartment

COPASI5
constant: true
units: time
value: 1.0
name: L
type: Parameter

CDMT00021
stoichiometry: 1.0
species: cLm
type: SpeciesReference

p5
constant: true
value: 4.0
name: p5
type: Parameter

CDMT00181
stoichiometry: 1.0
species: cG m
type: SpeciesReference

CDMT00056
stoichiometry: 1.0
species: s14
type: SpeciesReference

m29
constant: true
value: 5.0
name: m29
type: Parameter

CDMT00042
stoichiometry: 1.0
species: s11
type: SpeciesReference

CDMT00031
stoichiometry: 1.0
species: s8
type: SpeciesReference

m25
constant: true
value: 1.8
name: m25
type: Parameter

CDMT00128
stoichiometry: 1.0
species: s32
type: SpeciesReference

CDMT00212
stoichiometry: 1.0
species: cEG
type: SpeciesReference

m39
constant: true
value: 0.3
name: m39
type: Parameter

CDMT00148
stoichiometry: 1.0
species: s35
type: SpeciesReference

g16
constant: true
value: 0.3
name: g16
type: Parameter

g2
constant: true
value: 0.01
name: g2
type: Parameter

CDMT00055
stoichiometry: 1.0
species: cP7 m
type: SpeciesReference

CDMT00180
stoichiometry: 1.0
species: s42
type: SpeciesReference

COPASI8
constant: true
value: 1.0
name: EGn
type: Parameter

p8
constant: true
value: 0.6
name: p8
type: Parameter

CDMT00170
stoichiometry: 1.0
species: cCOP1n
type: SpeciesReference

CDMT00198
stoichiometry: 1.0
species: cZTL
type: SpeciesReference

m26
constant: true
value: 0.5
name: m26
type: Parameter

CDMT00013
stoichiometry: 1.0
species: s3
type: SpeciesReference

CDMT00127
stoichiometry: 1.0
species: cE3
type: SpeciesReference

CDMT00085
stoichiometry: 1.0
species: cT m
type: SpeciesReference

g1
constant: true
value: 0.1
name: g1
type: Parameter

CDMT00147
stoichiometry: 1.0
species: cLUX m
type: SpeciesReference

COPASI7
constant: true
value: 1.0
name: Gn
type: Parameter

p7
constant: true
value: 0.3
name: p7
type: Parameter

cE4 m
boundary condition: false
name: cE4_m
encodes: O04211
is version of: CHEBI:33699
has only substance units: false
initial amount: NaN
initial concentration: 0.1012
in compartment: def
type: Species
is: SBO:0000278
constant: false

g15
constant: true
value: 0.4
name: g15
type: Parameter

CDMT00197
stoichiometry: 1.0
species: cG
type: SpeciesReference

CDMT00033
stoichiometry: 1.0
species: s9
type: SpeciesReference

g14
constant: true
value: 0.004
name: g14
type: Parameter

n1
constant: true
value: 2.6
name: n1
type: Parameter

cP7 m
is: SBO:0000278
initial amount: NaN
name: cP7_m
is version of: CHEBI:33699
boundary condition: false
encodes: Q93WK5
has only substance units: false
type: Species
constant: false
in compartment: def
initial concentration: 0.4016

E34
constant: true
value: 1.0
name: E34
type: Parameter

m1
constant: true
value: 0.54
name: m1
type: Parameter

COPASI2
constant: true
value: 0.5
name: g10
type: Parameter

m33
constant: true
value: 13.0
name: m33
type: Parameter

CDMT00073
stoichiometry: 1.0
species: s19
type: SpeciesReference

CDMT00105
stoichiometry: 1.0
species: s27
type: SpeciesReference

g13
constant: true
value: 1.0
name: g13
type: Parameter

n2
constant: true
value: 0.64
name: n2
type: Parameter

CDMT00199
stoichiometry: 1.0
species: cZG
type: SpeciesReference

cE3n
type: Species
initial amount: NaN
boundary condition: false
constant: false
name: cE3n
occurs in: GO:0005634
is version of: O82804
in compartment: def
initial concentration: 0.0286
has only substance units: false
is: SBO:0000252

m2
constant: true
value: 0.24
name: m2
type: Parameter

CDMT00116
stoichiometry: 1.0
species: s29
type: SpeciesReference

m34
constant: true
value: 0.6
name: m34
type: Parameter

cP9 m
is version of: CHEBI:33699
name: cP9_m
in compartment: def
encodes: Q8L500
has only substance units: false
type: Species
constant: false
initial amount: NaN
is: SBO:0000278
initial concentration: 0.0658
boundary condition: false

cG
type: Species
name: cG
initial amount: NaN
constant: false
is version of: Q9SQI2
is: SBO:0000252
has only substance units: false
initial concentration: 0.0196
in compartment: def
boundary condition: false

m24
constant: true
value: 0.1
name: m24
type: Parameter

CDMT00106
stoichiometry: 1.0
species: cE4
type: SpeciesReference

g12
constant: true
value: 0.2
name: g12
type: Parameter

http://identifiers.org/biomodels.db/BIOMD0000000412#n3
constant: true
value: 0.29
name: n3
type: Parameter

cE3 trsl
kinetic law: CDMT00126
modifier: CDMT00125
product: CDMT00124
reactant: CDMT00123
is version of: GO:0006412
fast: false
reversible: false
name: cE3_trsl
type: Reaction

CDMT00071
stoichiometry: 1.0
species: s18
type: SpeciesReference

cE3n degr
kinetic law: CDMT00141
modifier: CDMT00136
modifier: CDMT00139
name: cE3n_degr
fast: false
is version of: GO:0030163
modifier: CDMT00138
reactant: CDMT00134
modifier: CDMT00140
type: Reaction
reversible: false
product: CDMT00135
modifier: CDMT00137

COPASI4
constant: true
value: 2.0
name: d
type: Parameter

m35
constant: true
value: 0.3
name: m35
type: Parameter

CDMT00117
stoichiometry: 1.0
species: cE3 m
type: SpeciesReference

CDMT00103
stoichiometry: 1.0
species: s26
type: SpeciesReference

cZG
in compartment: def
has only substance units: false
initial concentration: 0.0755
initial amount: NaN
is version of: Q9SQI2
name: cZG
is: SBO:0000297
is version of: Q94BT6
constant: false
type: Species
boundary condition: false

m21
constant: true
value: 0.08
name: m21
type: Parameter

g11
constant: true
value: 0.7
name: g11
type: Parameter

CDMT00040
stoichiometry: 1.0
species: s10
type: SpeciesReference

n4
constant: true
value: 0.07
name: n4
type: Parameter

CDMT00070
stoichiometry: 1.0
species: cNI m
type: SpeciesReference

COPASI3
constant: true
value: 1.8
name: m23
type: Parameter

m36
constant: true
value: 0.1
name: m36
type: Parameter

CDMT00050
stoichiometry: 1.0
species: cP7 m
type: SpeciesReference

m22
constant: true
value: 0.1
name: m22
type: Parameter

n5
constant: true
value: 0.23
name: n5
type: Parameter

m5
constant: true
value: 0.3
name: m5
type: Parameter

cLUX
initial concentration: 0.576
has only substance units: false
boundary condition: false
is: SBO:0000252
constant: false
type: Species
is version of: F4J959
initial amount: NaN
name: cLUX
in compartment: def

CDMT00063
stoichiometry: 1.0
species: s16
type: SpeciesReference

cP degr
kinetic law: CDMT00032
product: CDMT00031
reactant: CDMT00030
is version of: GO:0030163
fast: false
reversible: false
name: cP_degr
type: Reaction

CDMT00077
stoichiometry: 1.0
species: cNI
type: SpeciesReference

cZTL trsl
kinetic law: CDMT00203
product: CDMT00202
reactant: CDMT00201
is version of: GO:0006412
fast: false
reversible: false
name: cZTL_trsl
type: Reaction

cE3 m
initial concentration: 0.2991
boundary condition: false
encodes: O82804
has only substance units: false
is version of: CHEBI:33699
type: Species
initial amount: NaN
is: SBO:0000278
constant: false
name: cE3_m
in compartment: def

cE3n import
kinetic law: CDMT00133
product: CDMT00132
reactant: CDMT00131
is version of: GO:0015031
fast: false
reversible: false
name: cE3n_import
type: Reaction

cNI m degr
kinetic law: CDMT00072
product: CDMT00071
reactant: CDMT00070
is version of: GO:0006402
fast: false
reversible: false
name: cNI_m_degr
type: Reaction

n6
constant: true
value: 20.0
name: n6
type: Parameter

m10
constant: true
value: 1.0
name: m10
type: Parameter

cLm degr
kinetic law: CDMT00026
product: CDMT00025
reactant: CDMT00024
is version of: GO:0030163
fast: false
reversible: false
name: cLm_degr
type: Reaction

cZG degr
kinetic law: CDMT00209
product: CDMT00208
reactant: CDMT00207
is version of: GO:0030163
fast: false
reversible: false
name: cZG_degr
type: Reaction

m6
constant: true
value: 0.3
name: m6
type: Parameter

cT m trscr
modifier: CDMT00083
reversible: false
product: CDMT00081
modifier: CDMT00082
kinetic law: CDMT00084
name: cT_m_trscr
fast: false
type: Reaction
reactant: CDMT00080
is version of: GO:0009299

m30
constant: true
value: 3.0
name: m30
type: Parameter

cG m degr
kinetic law: CDMT00188
product: CDMT00187
reactant: CDMT00186
is version of: GO:0006402
fast: false
reversible: false
name: cG_m_degr
type: Reaction

CDMT00062
stoichiometry: 1.0
species: cP7
type: SpeciesReference

cG trsl
kinetic law: CDMT00192
modifier: CDMT00191
product: CDMT00190
reactant: CDMT00189
is version of: GO:0006412
fast: false
reversible: false
name: cG_trsl
type: Reaction

CDMT00189
stoichiometry: 1.0
species: s44
type: SpeciesReference

CDMT00102
stoichiometry: 1.0
species: cE4 m
type: SpeciesReference

m20
constant: true
value: 0.6
name: m20
type: Parameter

cL modif
kinetic law: CDMT00023
modifier: CDMT00022
product: CDMT00021
reactant: CDMT00020
is version of: MOD:00000
fast: false
reversible: false
name: cL_modif
type: Reaction

m11
constant: true
value: 1.0
name: m11
type: Parameter

n7
constant: true
value: 0.2
name: n7
type: Parameter

cLm
constant: false
in compartment: def
boundary condition: false
has part: P92973
initial concentration: 0.0788
name: cLm
has part: Q6R0H1
is: SBO:0000297
type: Species
is version of: CCO:U0000010
has only substance units: false
initial amount: NaN

m3
constant: true
value: 0.2
name: m3
type: Parameter

s50
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s50
type: Species

length
unit: CDMT00242
name: length
type: SBMLUnitsDef

CDMT00178
stoichiometry: 1.0
species: s41
type: SpeciesReference

CDMT00065
stoichiometry: 1.0
species: s17
type: SpeciesReference

cE3 m trscr
kinetic law: CDMT00119
modifier: CDMT00118
product: CDMT00117
reactant: CDMT00116
is version of: GO:0009299
fast: false
reversible: false
name: cE3_m_trscr
type: Reaction

cP7 degr
kinetic law: CDMT00064
product: CDMT00063
reactant: CDMT00062
is version of: GO:0030163
fast: false
reversible: false
name: cP7_degr
type: Reaction

m31
constant: true
value: 0.3
name: m31
type: Parameter

cLUX trsl
kinetic law: CDMT00153
modifier: CDMT00152
product: CDMT00151
reactant: CDMT00150
is version of: GO:0006412
fast: false
reversible: false
name: cLUX_trsl
type: Reaction

cCOP1d
has only substance units: false
in compartment: def
initial amount: NaN
occurs in: GO:0005634
is version of: P43254
initial concentration: 0.2566
name: cCOP1d
constant: false
is: SBO:0000252
boundary condition: false
type: Species

cT m
name: cT_m
has only substance units: false
initial concentration: 0.0977
initial amount: NaN
in compartment: def
boundary condition: false
encodes: Q9LKL2
constant: false
is: SBO:0000278
type: Species
is version of: CHEBI:33699

m12
constant: true
value: 1.0
name: m12
type: Parameter

W3 CDTF: Thu Aug 18 15:47:18 BST 2011

n8
constant: true
value: 0.5
name: n8
type: Parameter

m4
constant: true
value: 0.2
name: m4
type: Parameter

CDMT00177
stoichiometry: 1.0
species: cCOP1d
type: SpeciesReference

CDMT00074
stoichiometry: 1.0
species: cNI
type: SpeciesReference

cCOP1c
initial amount: NaN
constant: false
is: SBO:0000252
initial concentration: 0.3269
type: Species
name: cCOP1c
has only substance units: false
in compartment: def
boundary condition: false
occurs in: GO:0005737
is version of: P43254

m32
constant: true
value: 0.2
name: m32
type: Parameter

CDMT00187
stoichiometry: 1.0
species: s43
type: SpeciesReference