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077348
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metaid_0000013
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name: High Substrate MM - RuBisCO
time units: 949038
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is described by: http://identifiers.org/pubmed/22001849
reaction: metaid_0000028
created:
  W3 CDTF: Wed Oct 19 15:53:43 BST 2011
function def: metaid_0000003
function def: metaid_0000007
type: SBMLModel
name: MM s2 - reg (ATP synthesis)
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area units: 498119
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length unit: length
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name: PGA reduction
notes: This model is from the article: A quantitative comparison of Calvin–Benson cycle models Anne Arnold, Zoran Nikoloski Trends in Plant Science 2011 Oct 14. 22001849 , Abstract: The Calvin-Benson cycle (CBC) provides the precursors for biomass synthesis necessary for plant growth. The dynamic behavior and yield of the CBC depend on the environmental conditions and regulation of the cellular state. Accurate quantitative models hold the promise of identifying the key determinants of the tightly regulated CBC function and their effects on the responses in future climates. We provide an integrative analysis of the largest compendium of existing models for photosynthetic processes. Based on the proposed ranking, our framework facilitates the discovery of best-performing models with regard to metabolomics data and of candidates for metabolic engineering. Note: Model of the Calvin cycle by Giersch et al. (1990, DOI:10.1007/BF00032595 ). The parameter values are taken from Figure 4 and 5. The initial metabolite values are chosen from the data set of Zhu et al. (2007,DOI:10.1104/pp.107.103713 ). A detailed description of all modifications is given in the model described by Arnold and Nikoloski (2011,PMID:22001849 . This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2012 The BioModels.net Team. For more information see the terms of use . To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.
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is: MODEL1109270005
name: MM s1 - reg (TP reduction)
reaction: metaid_0000031
species: metaid_0000021
creator:
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    orgname: Max-Planck-Institute of Molecular Plant Physiology
  n:
    given: Anne
    family: Arnold
creator:
  ORG:
    orgname: Institute of Biochemistry and Biology, University of Potsdam, 14476 Potsdam, Germany
  n:
    given: Zoran
    family: Nikoloski
encodes: GO:0019253
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  n:
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    family: Chelliah
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occurs in: http://identifiers.org/taxonomy/33090
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name: Arnold2011_Giersch1990_CalvinCycle