334939
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334722
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334779
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945020
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334679
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334912
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944050
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334713
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334924
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944790
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334610
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334625
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334778
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334903
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334652
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945032
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334628
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334927
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334900
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334667
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334763
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334936
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334637
is: C00236
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334725
is: SBO:0000200
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944014
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943978
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334752
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334978
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334951
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334762
units: 943966
value: 2.0E9
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944110
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334915
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945272
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334716
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fast: false
reactant: 944593
type: Reaction
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ORG:
  orgname: University of Manchester
n:
  given: Kieran
  family: Smallbone

334891
constant: false
units: dimensionless
value: NaN
name: relative ENG
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334789
event assignment: 945332
trigger: 945320
use values from trigger time: true
name: addition of glucose
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334689
fast: false
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is part of: R00299
reversible: false
kinetic law: 944098
reactant: 944062
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is: SBO:0000177
product: 944086
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type: Reaction
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334769
units: 943966
value: 1.0E10
type: LocalParameter

944912
stoichiometry: 4.0
species: 334652
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944655
stoichiometry: 1.0
species: 334607
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334906
constant: false
units: dimensionless
value: NaN
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type: Parameter

334746
type: Reaction
fast: false
name: reaction 20
reversible: false
is version of: GO:0015867
reactant: 945164
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product: 945176
is: SBO:0000185

334774
units: 943966
value: 1.0E7
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species: 334604
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334788
units: 943942
value: 2000000.0
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944496
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334649
type: Species
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name: (DIN) intramitochondrial diphospyridine nucleotide
initial concentration: 3.0E-5
is: SBO:0000247
initial amount: NaN
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has only substance units: false
boundary condition: false
is: CHEBI:15846
in compartment: metaid cell

334768
units: 943966
value: 6.0E9
type: LocalParameter

944618
stoichiometry: 1.0
species: 334682
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944742
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944556
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334754
units: 943966
value: 1.0E10
type: LocalParameter

334948
constant: false
units: dimensionless
value: NaN
name: relative XSI
type: Parameter

334737
fast: false
kinetic law: 945044
is part of: GO:0006119
name: reaction 17
reactant: 945020
reversible: false
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type: Reaction
reactant: 945008
product: 945032

334777
units: 943966
value: 2.0E7
type: LocalParameter

334787
units: 943966
value: 3.0E9
type: LocalParameter

944802
stoichiometry: 1.0
species: 334628
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944668
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species: 334604
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species: 334676
type: SpeciesReference

334728
is version of: http://identifiers.org/ec-code/1.1.1.27
kinetic law: 944876
is version of: R00703
type: Reaction
reactant: 944838
reactant: 944826
reversible: false
is: SBO:0000200
product: 944851
is version of: GO:0004459
product: 944864
name: reaction 14
fast: false

944593
stoichiometry: 1.0
species: 334688
type: SpeciesReference

W3 CDTF: Wed Mar 16 03:53:21 GMT 2011

334734
kinetic law: 944996
reactant: 944948
reactant: 944960
product: 944972
type: Reaction
product: 944984
reactant: 944936
name: reaction 16
is: SBO:0000200
is version of: GO:0019646
reversible: false
fast: false

334767
units: 943966
value: 4.0E8
type: LocalParameter

334918
constant: false
units: dimensionless
value: NaN
name: relative DPN
type: Parameter

334757
units: 943966
value: 4.0E10
type: LocalParameter

334894
constant: false
units: dimensionless
value: NaN
name: relative TP1
type: Parameter

944134
stoichiometry: 1.0
species: 334607
type: SpeciesReference

944195
stoichiometry: 1.0
species: 334613
type: SpeciesReference

metaid cell
is: GO:0005623
is: SBO:0000290
constant: true
size: 1.0
spatial dimensions: 3.0
name: cell
type: Compartment

334749
reactant: 945224
reversible: false
reactant: 945212
product: 945236
is: SBO:0000177
name: reaction 21
type: Reaction
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fast: false

944680
stoichiometry: 1.0
species: 334640
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944718
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species: 334607
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945116
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944544
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species: 334634
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944038
exponent: 2.0
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species: 334673
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945128
stoichiometry: 1.0
species: 334655
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334598
is version of: IPR001312
constant: false
name: (ENZ) hexokinase
initial amount: NaN
in compartment: metaid cell
initial concentration: 1.0E-5
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944532
stoichiometry: 1.0
species: 334685
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334646
is: SBO:0000247
type: Species
boundary condition: false
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name: (LAC) lactate
in compartment: metaid cell
initial concentration: 0.001
is: CHEBI:422
is: C00186
initial amount: NaN

334759
units: 943942
value: 100000.0
type: LocalParameter

944183
stoichiometry: 1.0
species: 334610
type: SpeciesReference

334783
units: 943966
value: 1.2E8
type: LocalParameter

944472
stoichiometry: 1.0
species: 334622
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334719
name: reaction 11
type: Reaction
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kinetic law: 944693
fast: false
is: SBO:0000216
is version of: R01512
reactant: 944642
reversible: false
is version of: http://identifiers.org/ec-code/2.7.2.3
product: 944680
product: 944668

334784
units: 943966
value: 4000000.0
type: LocalParameter

944207
stoichiometry: 1.0
species: 334616
type: SpeciesReference

944851
stoichiometry: 1.0
species: 334643
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stoichiometry: 1.0
species: 334598
type: SpeciesReference

334607
initial amount: NaN
type: Species
initial concentration: 1.0E-4
is: SBO:0000247
is: C00008
constant: false
name: (ADP) adenosine diphosphate
is: CHEBI:16761
boundary condition: false
in compartment: metaid cell
has only substance units: false

334942
constant: false
units: dimensionless
value: NaN
name: relative DIH
type: Parameter

334743
fast: false
is: SBO:0000200
reactant: 945116
reversible: false
is version of: GO:0022900
name: reaction 19
kinetic law: 945152
modifier: 945140
product: 945128
type: Reaction

334957
constant: false
units: dimensionless
value: NaN
name: relative TP2
type: Parameter

334758
units: 943966
value: 4.0E10
type: LocalParameter

944387
stoichiometry: 1.0
species: 334628
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944705
stoichiometry: 1.0
species: 334640
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944448
stoichiometry: 1.0
species: 334631
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334631
is: CHEBI:16908
has only substance units: false
constant: false
name: (DPH) extramitochondrial reduced diphospyridine nucleotide
is: SBO:0000247
is: C00004
in compartment: metaid cell
type: Species
initial concentration: 1.0E-4
boundary condition: false
initial amount: NaN

334685
name: (MOB) acyl enzyme intermediate of glyceraldehyde 3-phoshphate dehydrogenase
boundary condition: false
in compartment: metaid cell
has only substance units: false
initial concentration: 0.0
has property: GO:0004365
constant: false
has part: CHEBI:29052
initial amount: NaN
type: Species
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944231
stoichiometry: 1.0
species: 334616
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945056
stoichiometry: 1.0
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334670
initial concentration: 0.0
initial amount: NaN
type: Species
name: (DBP) dibromophenol
has only substance units: false
is: SBO:0000247
in compartment: metaid cell
constant: false
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is: CHEBI:33625

334897
constant: false
units: dimensionless
value: NaN
name: relative ADP
type: Parameter

944436
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species: 334625
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944766
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species: 334643
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334658
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name: (XSI) high energy intermediate in oxidative phosphorylation
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type: Species
initial concentration: 2.0E-5
is: SBO:0000296
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in compartment: metaid cell
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334930
constant: false
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944146
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species: 334610
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334688
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type: Species
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has property: GO:0004365
name: (MOX) glyceraldehyde 3-phoshphate dehydrogenase
is: SBO:0000252
is version of: Q2TSD0
is version of: P04406
in compartment: metaid cell
constant: false

334619
boundary condition: false
has only substance units: false
initial amount: NaN
type: Species
is: C05378
initial concentration: 0.0
is: CHEBI:28013
is: SBO:0000247
constant: false
in compartment: metaid cell
name: (GPP) hexose diphosphate

334698
type: Reaction
kinetic law: 944291
fast: false
product: 944255
is part of: http://identifiers.org/ec-code/2.7.1.4
name: reaction 4
is: SBO:0000216
is part of: R04779
product: 944279
reactant: 944243
reversible: false
reactant: 944231
product: 944267
is part of: GO:0008865

334707
product: 944448
is: SBO:0000200
kinetic law: 944460
name: reaction 7
is version of: http://identifiers.org/ec-code/1.1.1.8
type: Reaction
is version of: R00842
is version of: GO:0004367
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reversible: false
reactant: 944411
fast: false
reactant: 944424
product: 944436

334595
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is: CHEBI:17234
type: Species
boundary condition: false
name: (GLU) glucose
initial concentration: 0.0
in compartment: metaid cell
is: C00293
initial amount: NaN
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is: SBO:0000247

334909
constant: false
units: dimensionless
value: NaN
name: relative GPP
type: Parameter

BIOMD0000000281
reaction: 334734
species: 334619
has version: hsa00010
parameter: 334915
parameter: 334945
is described by: http://identifiers.org/pubmed/13692276
species: 334607
rule: 334868
parameter: 334887
rule: 334829
has version: REACT 1383.6
parameter: 334924
species: 334676
parameter: 334957
species: 334658
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rule: 334838
occurs in: BTO:0000094
parameter: 334936
species: 334664
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parameter: 334969
units def: 943966
parameter: 334906
substance units: metaid_0000060
species: 334646
parameter: 334900
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species: 334628
species: 334613
units def: 943942
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rule: 334856
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reaction: 334689
species: 334601
species: 334595
occurs in: http://identifiers.org/taxonomy/9606
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time units: 933757
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species: 334640
species: 334634
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reaction: 334731
rule: 334871
is: MODEL1010190002
reaction: 334743
species: 334598
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notes: This model is described inthe article: Metabolic control mechanisms. 5. A solution for the equations representing interaction between glycolysis and respiration in ascites tumor cells. Britton Chance, David Garfinkel, Joseph Higgins and Benno Hess, J Biol Chem. 1960 35:2426-2439. PubmedID: 13692276 Abstract: The other papers of this series present experimental evidence for possible relationships between the kinetics of oxygen, glucose, adenosine diphosphate, adenosine triphosphate, and phosphate and those of the cytochromes and pyridine nucleotides of the ascites tumor cell. From these general experiments we are able to formulate, under the law of mass action, a minimum hypothesis under which the four metabolic regulations previously described can be observed. In brief, the system can be represented by the known enzyme systems, a relatively higher ADP affinity in respiration than in glycolysis, the mitochondrial membrane, a segregation of ATP into two compartments, and an ATP-utilizing system that is responsive to small decreases of the intracellular ADP level. The chemical equations for the pathway from glucose to oxygen are solved by a digital computer method so that the responses of the chemical equations and of the living cell can be accurately compared. For reasons already described, we greatly prefer a com- puter representation based upon a physical or chemical law representing the action of the system to a model simulating the operation of the chemical system but not based upon funda- mental laws for the reactions involved; such a representation would not adequately represent the kinetics of the system, as in an electric circuit network or in some types of hydraulic ana- logues. The model gives solutions of the reaction kinetics for three types of metabolism: 0 - 64s, metabolism of endogenous substrate 64s - 119s, metabolism of added glucose, illustrating the activated and inhibited aspects of glucose metabolism 119s - 153s, relief of glucose and oxygen inhib…
species: 334637
compartment: metaid cell
name: Chance1960_Glycolysis_Respiration
parameter: 334942
rule: 334874
rule: 334817
species: 334643
units def: 944014
reaction: 334704
species: 334625
rule: 334835

334772
units: 943966
value: 5.0E9
type: LocalParameter

334782
units: 943966
value: 1.5E10
type: LocalParameter

334731
reactant: 944900
reactant: 944888
is version of: GO:0042867
is: SBO:0000200
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product: 944912
kinetic law: 944924
reversible: false
name: reaction 15
type: Reaction
has version: GO:0006099

334969
constant: false
units: dimensionless
value: NaN
name: relative AGP
type: Parameter

944243
stoichiometry: 1.0
species: 334604
type: SpeciesReference

944864
stoichiometry: 1.0
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944778
stoichiometry: 1.0
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944086
stoichiometry: 1.0
species: 334601
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334773
units: 943966
value: 5.0E8
type: LocalParameter

334704
is part of: GO:0006127
fast: false
name: reaction 6
reversible: false
product: 944375
is version of: http://identifiers.org/ec-code/1.1.1.8
reactant: 944351
type: Reaction
is version of: GO:0004367
kinetic law: 944399
product: 944387
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945164
stoichiometry: 1.0
species: 334667
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334676
type: Species
has part: CHEBI:15422
constant: false
name: (PPP) enzyme intermediate concerned in ATP utilization
is: SBO:0000297
has part: CHEBI:16541
initial concentration: 1.0E-6
in compartment: metaid cell
boundary condition: false
has only substance units: false
has property: GO:0016887
initial amount: NaN

334966
constant: false
units: dimensionless
value: NaN
name: relative PPP
type: Parameter

945092
stoichiometry: 1.0
species: 334655
type: SpeciesReference

334921
constant: false
units: dimensionless
value: NaN
name: relative DPH
type: Parameter

334695
reactant: 944195
name: reaction 3
is part of: R04779
is: SBO:0000177
reversible: false
fast: false
reactant: 944183
is part of: http://identifiers.org/ec-code/2.7.1.4
type: Reaction
is part of: GO:0008865
product: 944207
kinetic law: 944219

334622
is: CHEBI:29052
is: SBO:0000247
type: Species
name: (GAP) glyceraldehyde 3-phosphate
boundary condition: false
initial amount: NaN
is: C00118
constant: false
in compartment: metaid cell
initial concentration: 0.0
has only substance units: false

943990
exponent: 1.0
scale: 1
multipler: 1.0
kind: LITRE
type: SBMLUnit

334613
type: Species
boundary condition: false
has only substance units: false
in compartment: metaid cell
has property: GO:0008662
is: SBO:0000297
constant: false
initial amount: NaN
name: (ETZ) phosphofructokinase
initial concentration: 1.0E-5
is version of: IPR022463

943942
unit: 943954
name: per second
type: SBMLUnitsDef

334661
type: Species
is: CHEBI:15379
constant: false
has only substance units: false
boundary condition: false
name: (OXY) oxygen
is: SBO:0000247
initial amount: NaN
in compartment: metaid cell
initial concentration: 5.0E-4
is: C00007

944424
stoichiometry: 1.0
species: 334628
type: SpeciesReference

945320
persistant: true
initial value: true
type: Trigger

944960
stoichiometry: 1.0
species: 334661
type: SpeciesReference

944074
stoichiometry: 1.0
species: 334598
type: SpeciesReference

334655
is: SBO:0000296
boundary condition: false
type: Species
initial concentration: 2.0E-5
in compartment: metaid cell
constant: false
name: (XI) low energy intermediate in oxidative phosphorylation
initial amount: NaN
is part of: GO:0045259
has only substance units: false
is part of: GO:0005746

944255
stoichiometry: 1.0
species: 334619
type: SpeciesReference

334972
constant: false
units: dimensionless
value: NaN
name: relative MOD
type: Parameter

944948
stoichiometry: 3.0
species: 334655
type: SpeciesReference

334640
is: C00197
type: Species
initial concentration: 0.0
initial amount: NaN
has only substance units: false
name: (PGA) 3 phosphoglycerate
constant: false
in compartment: metaid cell
is: CHEBI:17794
boundary condition: false
is: SBO:0000247

944363
stoichiometry: 1.0
species: 334631
type: SpeciesReference

334604
initial concentration: 5.0E-4
name: (TP1) adenosine triphosphate in store 1 (cytoplasm)
constant: false
in compartment: metaid cell
initial amount: NaN
is: C00002
boundary condition: false
is: CHEBI:15422
type: Species
has only substance units: false
is: SBO:0000247

334933
constant: false
units: dimensionless
value: NaN
name: relative PYR
type: Parameter

334664
name: (XSP) phosphorylated intermediate in oxidative phosphorylation
in compartment: metaid cell
has only substance units: false
initial concentration: 2.0E-5
is part of: GO:0045259
is: SBO:0000296
initial amount: NaN
type: Species
constant: false
is part of: GO:0005746
boundary condition: false

334887
constant: false
units: dimensionless
value: NaN
name: relative GLU
type: Parameter

334954
constant: false
units: dimensionless
value: NaN
name: relative XSP
type: Parameter

334740
product: 945080
reactant: 945068
type: Reaction
is part of: GO:0006119
reversible: false
kinetic law: 945104
product: 945092
name: reaction 18
reactant: 945056
fast: false
is: SBO:0000216

334975
constant: false
units: dimensionless
value: NaN
name: relative MOB
type: Parameter

334673
is version of: CHEBI:16541
name: (PUE) enzyme concerned in ATP utilization
constant: false
boundary condition: false
has only substance units: false
is: SBO:0000297
in compartment: metaid cell
initial concentration: 2.0E-6
initial amount: NaN
is version of: C00017
type: Species

944002
exponent: -1.0
scale: 1
multipler: 1.0
kind: SECOND
type: SBMLUnit

945080
stoichiometry: 1.0
species: 334667
type: SpeciesReference

944888
stoichiometry: 1.0
species: 334643
type: SpeciesReference

334701
reversible: false
is version of: http://identifiers.org/ec-code/4.1.2.13
reactant: 944303
name: reaction 5
type: Reaction
is: SBO:0000376
kinetic law: 944339
product: 944315
product: 944327
is version of: GO:0004332
fast: false
is version of: R01068

334601
boundary condition: false
initial concentration: 0.0
has only substance units: false
has version: IPR001312
has part: CHEBI:17234
type: Species
name: (ENG) hexokinase-glucose intermediate
in compartment: metaid cell
is: SBO:0000297
constant: false
initial amount: NaN

943954
exponent: -1.0
scale: 1
multipler: 1.0
kind: SECOND
type: SBMLUnit

945236
stoichiometry: 1.0
species: 334676
type: SpeciesReference

334634
in compartment: metaid cell
has only substance units: false
initial concentration: 0.004
is: C00009
boundary condition: false
constant: false
is: SBO:0000247
initial amount: NaN
is: CHEBI:18367
type: Species
name: (PID) inorganic phosphate

334888
constant: false
units: dimensionless
value: NaN
name: relative ENZ
type: Parameter

944267
stoichiometry: 1.0
species: 334613
type: SpeciesReference

945068
stoichiometry: 1.0
species: 334607
type: SpeciesReference

944936
stoichiometry: 1.0
species: 334652
type: SpeciesReference

334682
in compartment: metaid cell
name: (MOD) glyceraldehyde 3-phoshphate dehydrogenase-DPN complex
has version: IPR006424
initial amount: NaN
is: SBO:0000297
constant: false
boundary condition: false
has only substance units: false
initial concentration: 5.0E-5
has part: CHEBI:15846
type: Species

334692
is: SBO:0000216
reactant: 944110
type: Reaction
reversible: false
kinetic law: 944171
product: 944134
is part of: GO:0004396
fast: false
is part of: R00299
reactant: 944122
name: reaction 2
product: 944146
product: 944158
is part of: http://identifiers.org/ec-code/2.7.1.1

944062
stoichiometry: 1.0
species: 334595
type: SpeciesReference

944972
stoichiometry: 3.0
species: 334658
type: SpeciesReference

334643
boundary condition: false
constant: false
type: Species
initial concentration: 0.001
initial amount: NaN
in compartment: metaid cell
is: C00022
name: (PYR) pyruvate
is: CHEBI:32816
has only substance units: false
is: SBO:0000247

944375
stoichiometry: 1.0
species: 334679
type: SpeciesReference

334945
constant: false
units: dimensionless
value: NaN
name: relative XI
type: Parameter

944411
stoichiometry: 1.0
species: 334679
type: SpeciesReference

334616
has only substance units: false
constant: false
has version: IPR022463
is: SBO:0000297
initial amount: NaN
type: Species
boundary condition: false
name: (ETG) phosphofructokinase intermediate
has part: CHEBI:4170
initial concentration: 0.0
in compartment: metaid cell
has property: GO:0008662

orgname: EMBL-EBI

given: Lukas
family: Endler

W3 CDTF: Sun Oct 10 11:10:10 BST 2010