748130
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND
type: SBMLUnit

748746
stoichiometry: 1.0
species: X meta
type: SpeciesReference

reaction 15 meta
kinetic law: 748734
product: 748722
reactant: 748710
is: SBO:0000176
fast: false
reversible: false
name: v15: Conversion of the activated form of CTR1 protein to its inactivated form
type: Reaction

k14 meta
is: SBO:0000036
constant: true
units: 748046
value: 3.0
name: k14
type: Parameter

compartment 1 meta
is version of: GO:0005623
is: SBO:0000290
constant: true
size: 1.0
spatial dimensions: 3.0
name: cell
type: Compartment

ORG:
  orgname: The Integrative Cell Biology Laboratory and The Biophysical Sciences Institute, School of Biological and Biomedical Sciences, Durham University, Durham, UK
n:
  given: Junli
  family: Liu

RaT meta
in compartment: compartment 1 meta
has only substance units: false
name: Ra_total
has property: GO:0010011
type: Species
is: SBO:0000297
initial amount: NaN
initial concentration: 1.0
constant: false
boundary condition: true

748046
unit: 748082
unit: 748070
unit: 748058
name: per_uM_per_sec
type: SBMLUnitsDef

reaction 8 meta
kinetic law: 748458
modifier: 748446
product: 748434
is: GO:0006412
is: SBO:0000184
fast: false
reversible: false
name: v8: Translation of POLARIS gene
type: Reaction

Auxin meta
has only substance units: false
constant: false
type: Species
boundary condition: false
in compartment: compartment 1 meta
initial concentration: 0.1
is version of: CHEBI:22676
initial amount: NaN
name: Auxin
is: SBO:0000247

k auxin meta
is: SBO:0000035
constant: true
units: 748021
value: 70.0
name: k_auxin
type: Parameter

748070
exponent: 1.0
scale: 0
multipler: 1.0
kind: LITRE
type: SBMLUnit

748662
stoichiometry: 1.0
species: CTR1 meta
type: SpeciesReference

reaction 16 meta
kinetic law: 748770
modifier: 748758
product: 748746
is: SBO:0000176
fast: false
reversible: false
name: v16: Activation of the downstream of ethylene signalling response is inhibited by CTR1*
type: Reaction

748470
stoichiometry: 1.0
species: PLSp meta
type: SpeciesReference

reaction 6 meta
is version of: GO:0009299
modifier: 748373
is: SBO:0000183
modifier: 748385
reversible: false
fast: false
name: v6: Transcription of POLARIS gene
kinetic law: 748397
product: 748361
type: Reaction

Re meta
initial amount: NaN
initial concentration: 0.0
has only substance units: false
is: SBO:0000252
is version of: P49333
constant: false
boundary condition: true
type: Species
is version of: Q0WPQ2
in compartment: compartment 1 meta
name: Re

reaction 10 meta
kinetic law: 748530
modifier: 748518
product: 748506
reactant: 748494
is: SBO:0000176
fast: false
reversible: false
name: v10: Conversion of the inactivated form of ethylene receptor to its activated form by PLSp
type: Reaction

748806
stoichiometry: 1.0
species: CK meta
type: SpeciesReference

k18 meta
is: SBO:0000288
constant: true
units: 747960
value: 0.1
name: k18
type: Parameter

k4 meta
is: SBO:0000036
constant: true
units: 748046
value: 1.0
name: k4
type: Parameter

reaction 18 meta
kinetic law: 748830
modifier: 748818
product: 748806
is version of: GO:0009691
is: SBO:0000393
fast: false
reversible: false
name: v18: Biosynthesis of cytokinin
type: Reaction

748082
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND
type: SBMLUnit

748034
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND
type: SBMLUnit

k2c meta
is: SBO:0000027
constant: true
units: 747960
value: 0.01
name: k2c
type: Parameter

747960
unit: 747984
unit: 747972
name: uM
type: SBMLUnitsDef

748674
stoichiometry: 1.0
species: CTR1 star meta
type: SpeciesReference

k5 meta
is: SBO:0000035
constant: true
units: 748021
value: 1.0
name: k5
type: Parameter

k9 meta
is: SBO:0000035
constant: true
units: 748021
value: 1.0
name: k9
type: Parameter

IAA meta
is: C00954
name: IAA
type: Species
is: SBO:0000247
has only substance units: false
constant: false
initial amount: NaN
is: CHEBI:16411
in compartment: extra meta
boundary condition: true
initial concentration: 0.0

748009
exponent: 1.0
scale: 0
multipler: 1.0
kind: SECOND
type: SBMLUnit

reaction 3 meta
kinetic law: 748264
modifier: 748252
reactant: 748239
is version of: GO:0009852
is: SBO:0000179
fast: false
reversible: false
name: v3: Auxin removal from the cell
type: Reaction

CTR1 star meta
boundary condition: false
type: Species
constant: false
initial concentration: 0.3
is version of: Q05609
is: SBO:0000252
initial amount: NaN
in compartment: compartment 1 meta
has only substance units: false
name: CTR1*

k13 meta
is: SBO:0000035
constant: true
units: 748021
value: 1.0
name: k13
type: Parameter

CK ex meta
initial amount: NaN
name: Cytokinin_ext
has only substance units: false
is version of: CHEBI:23530
initial concentration: 0.0
boundary condition: true
is: SBO:0000247
type: Species
constant: false
in compartment: extra meta

BIOMD0000000269
occurs in: http://identifiers.org/taxonomy/3702
is: MODEL1008260000
parameter: k2c meta
units def: 747960
parameter: k9 meta
reaction: reaction 7 meta
species: PLSp meta
function def: 695449
function def: 695453
parameter: k10a meta
parameter: k auxin meta
function def: 695445
species: CTR1 star meta
parameter: k17 meta
species: ReT meta
species: CK meta
curated: true
compartment: extra meta
species: Auxin meta
parameter: k7 meta
reaction: reaction 3 meta
is described by: http://identifiers.org/pubmed/20531403
parameter: k ethylene meta
name: Rate law for v6: Transcription of POLARIS gene
parameter: k13 meta
species: Ra star meta
parameter: k4 meta
volume units: metaid_0000020
time units: 747996
units def: 747936
function def: 695438
function def: 695437
reaction: reaction 11 meta
species: RaT meta
reaction: reaction 5 meta
name: Rate law for v13: Removal of ethylene
species: PLSm meta
name: Rate law for v2: Auxin biosynthesis in the cell
reaction: v Ethylene meta
compartment: compartment 1 meta
parameter: k11 meta
reaction: v Auxin meta
species: CTR1 meta
species: IAA meta
parameter: k19 meta
reaction: reaction 14 meta
parameter: k5 meta
parameter: k8 meta
parameter: k16 meta
name: Rate law for v14: Conversion of the inactivated form of CTR1 protein to its activated form by Re*
is version of: GO:0009734
parameter: k14 meta
function def: 695446
name: Rate law for v19: removal of cytokinin
function def: 695455
type: SBMLModel
reaction: reaction 19 meta
parameter: k1 meta
reaction: reaction 12 meta
reaction: reaction 1 meta
parameter: k18a meta
units def: 748046
reaction: reaction 2 meta
name: Rate law for v18: Biosynthesis of cytokinin
function def: 695441
parameter: k16a meta
parameter: k cytokinin meta
function def: 695450
name: Rate law for v3: Auxin removal from the cell
reaction: reaction 8 meta
reaction: reaction 17 meta
reaction: reaction 6 meta
substance units: 747936
units def: 748021
name: Rate law for v15: Conversion of the activated form of CTR1 protein to its inactivated form
reaction: reaction 16 meta
is version of: GO:0009873
species: Re star meta
species: ET meta
name: Liu2010_Hormonal_Crosstalk_Arabidopsis

Ra meta
has only substance units: false
initial amount: NaN
in compartment: compartment 1 meta
type: Species
constant: false
name: Ra
has property: GO:0010011
is: SBO:0000297
initial concentration: 0.0
boundary condition: true

748494
stoichiometry: 1.0
species: Re meta
type: SpeciesReference

k6a meta
is: SBO:0000288
constant: true
units: 747960
value: 0.2
name: k6a
type: Parameter

k2a meta
is: SBO:0000046
constant: true
units: 748021
value: 2.8
name: k2a
type: Parameter

748106
exponent: 1.0
scale: -6
multipler: 1.0
kind: MOLE
type: SBMLUnit

748094
unit: 748130
unit: 748118
unit: 748106
name: per_uM_per_sec
type: SBMLUnitsDef

748506
stoichiometry: 1.0
species: Re star meta
type: SpeciesReference

reaction 9 meta
kinetic law: 748482
reactant: 748470
is version of: GO:0030163
is: SBO:0000179
fast: false
reversible: false
name: v9: Decay of protein of POLARIS gene
type: Reaction

748843
stoichiometry: 1.0
species: CK meta
type: SpeciesReference

k cytokinin meta
is: SBO:0000035
constant: true
units: 748021
value: 10.0
name: k_cytokinin
type: Parameter

reaction 1 meta
kinetic law: 748167
modifier: 748155
product: 748142
is version of: GO:0060918
is: SBO:0000185
fast: false
reversible: false
name: v1: Auxin Transport to the cell
type: Reaction

ACC meta
initial concentration: 0.0
is: CHEBI:18053
type: Species
is: SBO:0000247
constant: false
name: ACC
in compartment: extra meta
initial amount: NaN
has only substance units: false
boundary condition: true

748142
stoichiometry: 1.0
species: Auxin meta
type: SpeciesReference

reaction 5 meta
kinetic law: 748349
product: 748337
reactant: 748324
is version of: GO:0010930
is: SBO:0000176
fast: false
reversible: false
name: v5: Conversion of auxin receptor from the activated form to the inactivated form
type: Reaction

ReT meta
is version of: P49333
initial concentration: 0.3
name: Re_total
in compartment: compartment 1 meta
has only substance units: false
type: Species
initial amount: NaN
constant: false
is: SBO:0000252
boundary condition: true

reaction 19 meta
kinetic law: 748855
reactant: 748843
is version of: GO:0009823
is: SBO:0000179
fast: false
reversible: false
name: v19: removal of cytokinin
type: Reaction

reaction 7 meta
kinetic law: 748422
reactant: 748410
is version of: GO:0006402
is: SBO:0000179
fast: false
reversible: false
name: v7: Decay of mRNA of POLARIS gene
type: Reaction

v Ethylene meta
kinetic law: 748891
product: 748879
reactant: 748867
is: SBO:0000185
fast: false
reversible: false
name: vEthylene: Uptake rate of exogenous ACC (1-aminocyclopropane-1-carboxylic acid)
type: Reaction

748590
stoichiometry: 1.0
species: ET meta
type: SpeciesReference

k1a meta
is: SBO:0000186
constant: true
units: 748094
value: 1.0
name: k1a
type: Parameter

748058
exponent: -1.0
scale: -6
multipler: 1.0
kind: MOLE
type: SBMLUnit

748903
stoichiometry: 1.0
species: IAA meta
type: SpeciesReference

Ra star meta
name: Ra*
is: SBO:0000297
in compartment: compartment 1 meta
constant: false
initial amount: NaN
has property: GO:0010011
initial concentration: 1.0
type: Species
has only substance units: false
boundary condition: false

748118
exponent: -1.0
scale: 0
multipler: 1.0
kind: LITRE
type: SBMLUnit

747984
exponent: -1.0
scale: 0
multipler: 1.0
kind: LITRE
type: SBMLUnit

k2 meta
is: SBO:0000485
constant: true
units: 748094
value: 0.2
name: k2
type: Parameter

PLSp meta
name: PLSp
initial concentration: 0.1
boundary condition: false
is: SBO:0000252
is version of: Q8LLV8
is encoded by: http://identifiers.org/ncbigene/3770598
type: Species
has only substance units: false
initial amount: NaN
constant: false
in compartment: compartment 1 meta

v Cytokinin meta
kinetic law: 748964
product: 748951
reactant: 748939
is version of: GO:0010184
is: SBO:0000185
fast: false
reversible: false
name: vCytokinin: Uptake rate of exogenous cytokinin
type: Reaction

k15 meta
is: SBO:0000035
constant: true
units: 748021
value: 0.085
name: k15
type: Parameter

k3a meta
is: SBO:0000036
constant: true
units: 748046
value: 0.45
name: k3a
type: Parameter

k16a meta
is: SBO:0000038
constant: true
units: 748021
value: 1.0
name: k16a
type: Parameter

CK meta
is version of: CHEBI:23530
name: CK
initial concentration: 0.1
type: Species
in compartment: compartment 1 meta
is: SBO:0000247
boundary condition: false
initial amount: NaN
constant: false
has only substance units: false

k ethylene meta
is: SBO:0000035
constant: true
units: 748021
value: 0.5
name: k_ethylene
type: Parameter

k1 meta
is: SBO:0000288
constant: true
units: 747960
value: 1.0
name: k1
type: Parameter

k10 meta
is: SBO:0000035
constant: true
units: 748021
value: 3.0E-4
name: k10
type: Parameter

k18a meta
is: SBO:0000324
constant: true
units: 748094
value: 1.0
name: k18a
type: Parameter

747936
unit: 747948
name: umole
type: SBMLUnitsDef

reaction 17 meta
kinetic law: 748794
reactant: 748782
is version of: GO:0030163
is: SBO:0000179
fast: false
reversible: false
name: v17: Removal of the unknown molecule X
type: Reaction

748867
stoichiometry: 1.0
species: ACC meta
type: SpeciesReference

k8 meta
is: SBO:0000035
constant: true
units: 748021
value: 1.0
name: k8
type: Parameter

748179
stoichiometry: 1.0
species: Auxin meta
type: SpeciesReference

k12a meta
is: SBO:0000036
constant: true
units: 748046
value: 0.1
name: k12a
type: Parameter

k3 meta
is: SBO:0000035
constant: true
units: 748021
value: 2.0
name: k3
type: Parameter

747972
exponent: 1.0
scale: -6
multipler: 1.0
kind: MOLE
type: SBMLUnit

748542
stoichiometry: 1.0
species: Re star meta
type: SpeciesReference

PLSm meta
is encoded by: http://identifiers.org/ncbigene/3770598
name: PLSm
boundary condition: false
type: Species
in compartment: compartment 1 meta
has only substance units: false
constant: false
initial concentration: 0.1
initial amount: NaN
is: SBO:0000278

748939
stoichiometry: 1.0
species: CK ex meta
type: SpeciesReference

k17 meta
is: SBO:0000035
constant: true
units: 748021
value: 0.1
name: k17
type: Parameter

k6 meta
is: SBO:0000035
constant: true
units: 748021
value: 0.3
name: k6
type: Parameter

k12 meta
is: SBO:0000035
constant: true
units: 748094
value: 0.1
name: k12
type: Parameter

reaction 11 meta
kinetic law: 748578
modifier: 748566
product: 748554
reactant: 748542
is: SBO:0000176
fast: false
reversible: false
name: v11: Conversion of the activated form of ethylene receptor to its inactivated form
type: Reaction

748554
stoichiometry: 1.0
species: Re meta
type: SpeciesReference

k10a meta
is: SBO:0000036
constant: true
units: 748046
value: 0.5
name: k10a
type: Parameter

ET meta
name: ET
initial concentration: 0.1
constant: false
is: CHEBI:18153
in compartment: compartment 1 meta
has only substance units: false
initial amount: NaN
is: SBO:0000247
type: Species
is: C06547
boundary condition: false

748951
stoichiometry: 1.0
species: CK meta
type: SpeciesReference

748879
stoichiometry: 1.0
species: ET meta
type: SpeciesReference

747948
exponent: 1.0
scale: -6
multipler: 1.0
kind: MOLE
type: SBMLUnit

reaction 13 meta
kinetic law: 748650
reactant: 748638
is version of: GO:0042457
is: SBO:0000179
fast: false
reversible: false
name: v13: Removal of ethylene
type: Reaction

k11 meta
is: SBO:0000036
constant: true
units: 748046
value: 5.0
name: k11
type: Parameter

748782
stoichiometry: 1.0
species: X meta
type: SpeciesReference

748288
stoichiometry: 1.0
species: Ra star meta
type: SpeciesReference

X meta
is: SBO:0000240
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.1
initial amount: NaN
in compartment: compartment 1 meta
name: X
type: Species

748021
unit: 748034
name: per_sec
type: SBMLUnitsDef

extra meta
is version of: GO:0005615
constant: true
size: 1.0
spatial dimensions: 3.0
name: extracellular
type: Compartment

v Auxin meta
kinetic law: 748927
product: 748915
reactant: 748903
is version of: GO:0060919
is: SBO:0000185
fast: false
reversible: false
name: vAuxin: Uptake rate of exogenous auxin (indole-3-acetic acid, IAA)
type: Reaction

reaction 14 meta
kinetic law: 748698
modifier: 748686
product: 748674
reactant: 748662
is: SBO:0000176
fast: false
reversible: false
name: v14: Conversion of the inactivated form of CTR1 protein to its activated form by Re*
type: Reaction

Re star meta
has only substance units: false
initial amount: NaN
initial concentration: 0.3
type: Species
in compartment: compartment 1 meta
is version of: P49333
name: Re*
constant: false
boundary condition: false
is: SBO:0000252

748337
stoichiometry: 1.0
species: Ra meta
type: SpeciesReference

748361
stoichiometry: 1.0
species: PLSm meta
type: SpeciesReference

748324
stoichiometry: 1.0
species: Ra star meta
type: SpeciesReference

748710
stoichiometry: 1.0
species: CTR1 star meta
type: SpeciesReference

748410
stoichiometry: 1.0
species: PLSm meta
type: SpeciesReference

CTR1 meta
is: SBO:0000252
initial concentration: 0.0
name: CTR1
constant: false
initial amount: NaN
type: Species
has only substance units: false
is version of: Q05609
in compartment: compartment 1 meta
boundary condition: true

748239
stoichiometry: 1.0
species: Auxin meta
type: SpeciesReference

reaction 4 meta
product: 748288
is version of: GO:0010929
kinetic law: 748312
name: v4: Conversion of auxin receptor from the inactivated form to the activated form
fast: false
is: SBO:0000176
reactant: 748276
modifier: 748300
reversible: false
type: Reaction

748915
stoichiometry: 1.0
species: Auxin meta
type: SpeciesReference

748276
stoichiometry: 1.0
species: Ra meta
type: SpeciesReference

k2b meta
is: SBO:0000288
constant: true
units: 747960
value: 1.0
name: k2b
type: Parameter

748434
stoichiometry: 1.0
species: PLSp meta
type: SpeciesReference

reaction 12 meta
modifier: 748614
type: Reaction
is: SBO:0000393
is version of: GO:0009693
reversible: false
modifier: 748602
name: v12: Ethylene biosynthesis
product: 748590
kinetic law: 748626
fast: false

747996
unit: 748009
name: sec
type: SBMLUnitsDef

k19 meta
is: SBO:0000035
constant: true
units: 748021
value: 1.0
name: k19
type: Parameter

k7 meta
is: SBO:0000035
constant: true
units: 748021
value: 1.0
name: k7
type: Parameter

CTR1T meta
boundary condition: true
constant: false
initial concentration: 0.3
has only substance units: false
name: CTR1_total
is version of: Q05609
in compartment: compartment 1 meta
type: Species
is: SBO:0000252
initial amount: NaN

k16 meta
is: SBO:0000324
constant: true
units: 748094
value: 0.3
name: k16
type: Parameter

748722
stoichiometry: 1.0
species: CTR1 meta
type: SpeciesReference

748638
stoichiometry: 1.0
species: ET meta
type: SpeciesReference

reaction 2 meta
fast: false
modifier: 748215
type: Reaction
is version of: GO:0009851
reversible: false
is: SBO:0000393
modifier: 748191
name: v2: Auxin biosynthesis in the cell
kinetic law: 748227
product: 748179
modifier: 748203

orgname: EMBL-EBI

given: Lukas
family: Endler

W3 CDTF: Wed Feb 08 19:28:43 GMT 2012

W3 CDTF: Mon Sep 20 18:04:58 BST 2010