metaid_0000016
type: Reaction
is version of: GO:0006816
fast: false
reactant: 880276
is version of: GO:0032471
is version of: GO:0007204
reversible: true
name: Ca translocation between cytoplasm and ER
kinetic law: 880300
product: 880288

880276
stoichiometry: 1.0
species: metaid_0000004
type: SpeciesReference

metaid_0000018
is version of: GO:0005783
constant: true
size: 1.0
spatial dimensions: 3.0
name: endoplasmic reticulum
type: Compartment

metaid_0000011
constant: true
value: 1.0
type: Parameter

metaid_0000013
constant: false
value: NaN
type: Parameter

metaid_0000023
is version of: GO:0005576
constant: true
size: 1.0
spatial dimensions: 3.0
type: Compartment

metaid_0000008
constant: true
value: 4.0
type: Parameter

BIOMD0000000114
notes: This model encoded according to the paper Hormone induced Calcium Oscillations in Liver Cells Can Be Explained by a Simple One Pool Model. The values of parameters a and alpha are varioused inorder to simulate results in different situations. For Figure 3A, a=3.5,alpha=1.2 ; Figure 3B, a=3,alpha=5 ; Figure 3C a= 0.95, alpha=1.5; Figure3D, a=1, alpha=5. Keep in mind that the value for the xy axies are arbitrary value. Figures3 in the paper are reproduced by COPASI 4.0.20(development) , and SBMLodeSolver online. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information. In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not. To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.
parameter: metaid_0000009
parameter: metaid_0000006
parameter: metaid_0000013
parameter: metaid_0000010
reaction: metaid_0000021
is described by: http://identifiers.org/pubmed/1904060
is: MODEL8907365389
parameter: metaid_0000008
area units: metaid_0000005
volume units: metaid_0000084
length unit: length
creator:
  ORG:
    orgname: BNMC
  n:
    given: Enuo
    family: He
species: metaid_0000005
rule: metaid_0000014
reaction: metaid_0000022
parameter: metaid_0000020
compartment: metaid_0000017
time units: metaid_0000048
is version of: GO:0009755
is version of: GO:0051924
created:
  W3 CDTF: Thu May 10 09:46:04 BST 2007
modified:
  W3 CDTF: Thu Jul 05 15:44:46 BST 2012
type: SBMLModel
occurs in: http://identifiers.org/taxonomy/10114
substance units: metaid_0000031
reaction: metaid_0000015
compartment: metaid_0000018
curated: true
parameter: metaid_0000007
parameter: metaid_0000011
species: metaid_0000004
compartment: metaid_0000023
name: Somogyi1990_CaOscillations
reaction: metaid_0000016

metaid_0000004
has only substance units: false
type: Species
is: C00076
boundary condition: false
in compartment: metaid_0000018
name: Ca_ER
initial concentration: 1.0
initial amount: NaN
constant: false
is: CHEBI:29108

metaid_0000021
kinetic law: 880324
reactant: 880312
is version of: GO:0006816
is version of: GO:0051481
is version of: GO:0005388
fast: false
reversible: false
name: Ca pumped out of the cell
type: Reaction

880288
stoichiometry: 1.0
species: metaid_0000005
type: SpeciesReference

metaid_0000006
constant: true
value: 0.01
type: Parameter

metaid_0000010
constant: true
value: 2.0
type: Parameter

metaid_0000015
kinetic law: 880264
product: 880252
is version of: GO:0006816
is version of: GO:0007204
fast: false
reversible: false
name: Ca flux into the cell
type: Reaction

metaid_0000017
is version of: GO:0005737
constant: true
size: 1.0
spatial dimensions: 3.0
type: Compartment

880252
stoichiometry: 1.0
species: metaid_0000005
type: SpeciesReference

metaid_0000007
notes: Value of alpha is changed for different figures.
constant: true
value: 5.0
type: Parameter

880312
stoichiometry: 1.0
species: metaid_0000005
type: SpeciesReference

metaid_0000009
notes: Value of a is changed for different figures.
constant: true
value: 3.0
type: Parameter

880348
stoichiometry: 1.0
species: metaid_0000005
type: SpeciesReference

metaid_0000020
constant: true
value: 1.0
type: Parameter

880336
stoichiometry: 1.0
species: metaid_0000004
type: SpeciesReference

metaid_0000005
is: C00076
name: Ca_Cyt
initial amount: NaN
boundary condition: false
constant: false
is: CHEBI:29108
in compartment: metaid_0000017
initial concentration: 1.0
has only substance units: false
type: Species

metaid_0000022
kinetic law: 880360
product: 880348
fast: false
is version of: GO:0051482
name: InsP3 channel
type: Reaction
is version of: GO:0006816
reversible: false
reactant: 880336
is version of: GO:0005220