metaid_0000049
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constant: true
boundary condition: true
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type: Species

metaid_0000039
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
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799281
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species: metaid_0000058
type: SpeciesReference

796750
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species: metaid_0000039
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797667
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species: metaid_0000028
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799027
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species: metaid_0000034
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797655
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species: metaid_0000024
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797378
stoichiometry: 1.0
species: metaid_0000040
type: SpeciesReference

metaid_0000011
constant: true
value: 0.001
type: Parameter

799378
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

797715
stoichiometry: 1.0
species: metaid_0000042
type: SpeciesReference

metaid_0000138
kinetic law: 800086
product: 800074
reactant: 800062
reactant: 800050
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

800206
stoichiometry: 1.0
species: metaid_0000040
type: SpeciesReference

ORG:
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n:
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  family: He

796123
stoichiometry: 1.0
species: metaid_0000032
type: SpeciesReference

797474
stoichiometry: 1.0
species: metaid_0000046
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metaid_0000021
is version of: GO:0005829
constant: true
size: 1.0
spatial dimensions: 3.0
type: Compartment

795943
stoichiometry: 1.0
species: metaid_0000027
type: SpeciesReference

metaid_0000048
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constant: true
boundary condition: true
has only substance units: true
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798184
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species: metaid_0000046
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metaid_0000038
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initial amount: 0.0
in compartment: metaid_0000021
type: Species

796495
stoichiometry: 1.0
species: metaid_0000039
type: SpeciesReference

metaid_0000010
constant: true
value: 0.001
type: Parameter

800350
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species: metaid_0000039
type: SpeciesReference

799946
stoichiometry: 1.0
species: metaid_0000035
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798583
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799510
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species: metaid_0000034
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799438
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species: metaid_0000058
type: SpeciesReference

metaid_0000137
kinetic law: 800038
product: 800026
reactant: 800014
reactant: 800002
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

metaid_0000020
constant: true
value: 1.0E-5
type: Parameter

799318
stoichiometry: 1.0
species: metaid_0000040
type: SpeciesReference

798306
stoichiometry: 1.0
species: metaid_0000023
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798499
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species: metaid_0000038
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796762
stoichiometry: 1.0
species: metaid_0000028
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798209
stoichiometry: 8.0
species: metaid_0000024
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799039
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species: metaid_0000058
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797064
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species: metaid_0000024
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797643
stoichiometry: 1.0
species: metaid_0000043
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metaid_0000037
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boundary condition: false
has only substance units: true
initial concentration: NaN
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in compartment: metaid_0000021
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metaid_0000109
kinetic law: 798679
product: 798667
reactant: 798655
reactant: 798643
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

800218
stoichiometry: 1.0
species: metaid_0000058
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799849
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species: metaid_0000035
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796111
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species: metaid_0000031
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metaid_0000023
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boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
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800302
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species: metaid_0000038
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797703
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species: metaid_0000028
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metaid_0000036
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boundary condition: false
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initial concentration: NaN
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796483
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species: metaid_0000032
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795955
stoichiometry: 1.0
species: metaid_0000033
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metaid_0000090
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kinetic law: 797607
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is version of: GO:0016579
product: 797571
fast: false
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type: Reaction
reactant: 797559
reversible: false

metaid_0000139
kinetic law: 800134
product: 800122
reactant: 800110
reactant: 800098
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

799522
stoichiometry: 1.0
species: metaid_0000037
type: SpeciesReference

799426
stoichiometry: 1.0
species: metaid_0000035
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798571
stoichiometry: 2.0
species: metaid_0000040
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798835
stoichiometry: 1.0
species: metaid_0000038
type: SpeciesReference

800747
stoichiometry: 1.0
species: metaid_0000058
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metaid_0000022
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 500.0
in compartment: metaid_0000021
type: Species

metaid_0000149
kinetic law: 800615
product: 800603
reactant: 800591
reactant: 800579
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

800362
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

metaid_0000091
reactant: 797631
fast: false
product: 797643
kinetic law: 797679
reversible: false
reactant: 797619
product: 797655
is version of: GO:0016579
product: 797667
type: Reaction

797450
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species: metaid_0000046
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797739
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

800314
stoichiometry: 1.0
species: metaid_0000058
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metaid_0000035
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boundary condition: false
has only substance units: true
initial concentration: NaN
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in compartment: metaid_0000021
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798197
stoichiometry: 1.0
species: metaid_0000047
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metaid_0000045
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boundary condition: false
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initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
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796546
stoichiometry: 1.0
species: metaid_0000032
type: SpeciesReference

metaid_0000025
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boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 100.0
in compartment: metaid_0000021
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797631
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

800531
stoichiometry: 1.0
species: metaid_0000038
type: SpeciesReference

797052
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

metaid_0000015
constant: true
value: 1.0E-5
type: Parameter

797354
stoichiometry: 1.0
species: metaid_0000044
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799003
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

796207
stoichiometry: 1.0
species: metaid_0000027
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798847
stoichiometry: 1.0
species: metaid_0000023
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800735
stoichiometry: 1.0
species: metaid_0000041
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metaid_0000092
kinetic law: 797751
product: 797739
fast: false
product: 797715
is version of: GO:0016579
type: Reaction
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product: 797727
reactant: 797703
reversible: false

metaid_0000034
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
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797991
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species: metaid_0000052
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799414
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species: metaid_0000034
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798475
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species: metaid_0000058
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metaid_0000044
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boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
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796471
stoichiometry: 1.0
species: metaid_0000038
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metaid_0000024
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constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 500.0
in compartment: metaid_0000021
type: Species

metaid_0000014
constant: true
value: 1.0E-5
type: Parameter

798402
stoichiometry: 1.0
species: metaid_0000058
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800494
stoichiometry: 1.0
species: metaid_0000039
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798160
stoichiometry: 1.0
species: metaid_0000054
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metaid_0000093
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product: 797811
reversible: false
reactant: 797763
product: 797823
reactant: 797775
is version of: GO:0016579
fast: false
type: Reaction
kinetic law: 797835
product: 797787

metaid_0000033
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
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796135
stoichiometry: 1.0
species: metaid_0000025
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796534
stoichiometry: 1.0
species: metaid_0000039
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798462
stoichiometry: 2.0
species: metaid_0000037
type: SpeciesReference

799366
stoichiometry: 1.0
species: metaid_0000041
type: SpeciesReference

797727
stoichiometry: 1.0
species: metaid_0000024
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metaid_0000047
is: CHEBI:15422
constant: true
boundary condition: true
has only substance units: true
initial concentration: NaN
initial amount: 10000.0
in compartment: metaid_0000021
type: Species

797040
stoichiometry: 1.0
species: metaid_0000035
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metaid_0000027
is version of: IPR000569
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 100.0
in compartment: metaid_0000021
type: Species

metaid_0000013
constant: true
value: 1.0E-5
type: Parameter

799978
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

800543
stoichiometry: 1.0
species: metaid_0000040
type: SpeciesReference

metaid_0000094
product: 797895
reactant: 797847
product: 797871
is version of: GO:0008233
kinetic law: 797919
type: Reaction
reactant: 797859
is version of: GO:0016887
reversible: false
product: 797907
fast: false
product: 797883

metaid_0000032
has part: IPR000626
has part: IPR000608
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

800723
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species: metaid_0000040
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798859
stoichiometry: 1.0
species: metaid_0000058
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metaid_0000046
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boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

799958
stoichiometry: 1.0
species: metaid_0000040
type: SpeciesReference

metaid_0000026
is version of: IPR000608
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 100.0
in compartment: metaid_0000021
type: Species

800482
stoichiometry: 1.0
species: metaid_0000038
type: SpeciesReference

798318
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

795931
stoichiometry: 1.0
species: metaid_0000023
type: SpeciesReference

metaid_0000012
constant: true
value: 0.01
type: Parameter

796883
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

799812
stoichiometry: 1.0
species: metaid_0000037
type: SpeciesReference

metaid_0000030
is version of: CHEBI:26523
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 10.0
in compartment: metaid_0000021
type: Species

BIOMD0000000105
species: metaid_0000048
reaction: metaid_0000127
reaction: metaid_0000082
compartment: metaid_0000021
length unit: length
reaction: metaid_0000147
reaction: metaid_0000071
reaction: metaid_0000130
reaction: metaid_0000069
reaction: metaid_0000102
species: metaid_0000060
is version of: GO:0043161
species: metaid_0000043
reaction: metaid_0000083
reaction: metaid_0000096
species: metaid_0000023
reaction: metaid_0000099
species: metaid_0000028
reaction: metaid_0000086
parameter: metaid_0000013
is: MODEL6540028317
name: Proctor2007_ubiquitine
species: metaid_0000031
reaction: metaid_0000144
reaction: metaid_0000131
species: metaid_0000027
reaction: metaid_0000103
reaction: metaid_0000108
curated: true
parameter: metaid_0000014
reaction: metaid_0000138
parameter: metaid_0000004
reaction: metaid_0000080
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reaction: metaid_0000145
reaction: metaid_0000109
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species: metaid_0000051
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reaction: metaid_0000067
reaction: metaid_0000100
reaction: metaid_0000094
reaction: metaid_0000081
reaction: metaid_0000097
parameter: metaid_0000011
reaction: metaid_0000112
reaction: metaid_0000142
species: metaid_0000025
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reaction: metaid_0000114
reaction: metaid_0000101
reaction: metaid_0000106
reaction: metaid_0000095
reaction: metaid_0000098
parameter: metaid_0000012
reaction: metaid_0000151
occurs in: http://identifiers.org/taxonomy/2759
reaction: metaid_0000154
reaction: metaid_0000126
parameter: metaid_0000007
species: metaid_0000047
species: metaid_0000030
reaction: metaid_0000140
reaction: metaid_0000143
reaction: metaid_0000115
reaction: metaid_0000107
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species: metaid_0000055
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reaction: metaid_0000092
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reaction: metaid_0000149
species: metaid_0000039
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species: metaid_0000034
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reaction: metaid_0000079

metaid_0000040
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

metaid_0000117
kinetic law: 799063
product: 799051
reactant: 799039
reactant: 799027
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

798245
stoichiometry: 1.0
species: metaid_0000055
type: SpeciesReference

797294
stoichiometry: 1.0
species: metaid_0000029
type: SpeciesReference

metaid_0000103
kinetic law: 798450
product: 798438
reactant: 798426
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

metaid_0000031
has part: IPR000011
has part: IPR000626
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

metaid_0000082
product: 797113
reactant: 797089
fast: false
type: Reaction
product: 797125
is version of: GO:0016579
product: 797137
kinetic law: 797149
reversible: false
reactant: 797101

799245
stoichiometry: 2.0
species: metaid_0000058
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796944
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species: metaid_0000037
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799558
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species: metaid_0000034
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799294
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species: metaid_0000058
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798511
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species: metaid_0000058
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797799
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species: metaid_0000029
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798051
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species: metaid_0000029
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800170
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species: metaid_0000058
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796618
stoichiometry: 1.0
species: metaid_0000041
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metaid_0000118
kinetic law: 799112
product: 799100
reactant: 799088
reactant: 799075
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

797234
stoichiometry: 1.0
species: metaid_0000037
type: SpeciesReference

799149
stoichiometry: 2.0
species: metaid_0000058
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800338
stoichiometry: 1.0
species: metaid_0000037
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796594
stoichiometry: 1.0
species: metaid_0000040
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metaid_0000104
kinetic law: 798487
product: 798475
reactant: 798462
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

796654
stoichiometry: 1.0
species: metaid_0000041
type: SpeciesReference

metaid_0000081
fast: false
type: Reaction
reversible: false
is version of: GO:0016579
reactant: 797016
product: 797064
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product: 797052
product: 797040
kinetic law: 797076

799330
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

metaid_0000129
kinetic law: 799643
product: 799631
reactant: 799618
reactant: 799606
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

798715
stoichiometry: 1.0
species: metaid_0000058
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797510
stoichiometry: 1.0
species: metaid_0000024
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799800
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species: metaid_0000035
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metaid_0000119
kinetic law: 799161
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is version of: GO:0006461
fast: false
reversible: false
type: Reaction

797197
stoichiometry: 1.0
species: metaid_0000028
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796895
stoichiometry: 1.0
species: metaid_0000037
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metaid_0000043
constant: false
boundary condition: false
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initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

metaid_0000101
kinetic law: 798378
product: 798366
reactant: 798354
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

800290
stoichiometry: 1.0
species: metaid_0000037
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796956
stoichiometry: 1.0
species: metaid_0000028
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metaid_0000070
is version of: GO:0000209
reactant: 796291
kinetic law: 796339
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reactant: 796303
product: 796315
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type: Reaction
reversible: false

797282
stoichiometry: 1.0
species: metaid_0000038
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metaid_0000080
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type: Reaction
product: 796968
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is version of: GO:0016579
product: 796980
reactant: 796956
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kinetic law: 797004

797595
stoichiometry: 1.0
species: metaid_0000028
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797523
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species: metaid_0000028
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796558
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species: metaid_0000040
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800651
stoichiometry: 1.0
species: metaid_0000058
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800591
stoichiometry: 1.0
species: metaid_0000041
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798063
stoichiometry: 1.0
species: metaid_0000048
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metaid_0000041
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boundary condition: false
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initial concentration: NaN
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in compartment: metaid_0000021
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metaid_0000102
kinetic law: 798414
product: 798402
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is version of: GO:0006461
fast: false
reversible: false
type: Reaction

metaid_0000042
constant: false
boundary condition: false
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initial concentration: NaN
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799342
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species: metaid_0000058
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799137
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species: metaid_0000058
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797823
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species: metaid_0000028
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798269
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species: metaid_0000023
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799221
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species: metaid_0000038
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metaid_0000127
kinetic law: 799546
product: 799534
reactant: 799522
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is version of: GO:0006461
fast: false
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type: Reaction

799534
stoichiometry: 1.0
species: metaid_0000058
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metaid_0000113
kinetic law: 798871
product: 798859
reactant: 798847
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is version of: GO:0006461
fast: false
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type: Reaction

797583
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species: metaid_0000024
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796968
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species: metaid_0000036
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798907
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species: metaid_0000058
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metaid_0000107
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is version of: GO:0006461
fast: false
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type: Reaction

797185
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species: metaid_0000023
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800050
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species: metaid_0000036
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798703
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797306
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796678
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species: metaid_0000040
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797258
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species: metaid_0000042
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metaid_0000114
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is version of: GO:0006461
fast: false
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type: Reaction

metaid_0000128
kinetic law: 799594
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is version of: GO:0006461
fast: false
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type: Reaction

metaid_0000108
kinetic law: 798631
product: 798619
reactant: 798607
is version of: GO:0006461
fast: false
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type: Reaction

796291
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species: metaid_0000035
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798535
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species: metaid_0000039
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797979
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800699
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797811
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species: metaid_0000024
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metaid_0000125
kinetic law: 799450
product: 799438
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is version of: GO:0006461
fast: false
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type: Reaction

797571
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797209
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799897
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species: metaid_0000035
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799233
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species: metaid_0000058
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797907
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species: metaid_0000051
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800808
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species: metaid_0000058
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metaid_0000115
kinetic law: 798967
product: 798955
reactant: 798943
reactant: 798931
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

metaid_0000105
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reactant: 798499
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

798811
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species: metaid_0000058
type: SpeciesReference

796871
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species: metaid_0000038
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797089
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species: metaid_0000035
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795979
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species: metaid_0000033
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797173
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species: metaid_0000028
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metaid_0000126
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product: 799486
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reactant: 799462
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

metaid_0000116
kinetic law: 799015
product: 799003
reactant: 798991
reactant: 798979
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

795907
stoichiometry: 1.0
species: metaid_0000057
type: SpeciesReference

799825
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species: metaid_0000058
type: SpeciesReference

797246
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species: metaid_0000029
type: SpeciesReference

796666
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species: metaid_0000028
type: SpeciesReference

796003
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species: metaid_0000027
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800687
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species: metaid_0000041
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796606
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species: metaid_0000032
type: SpeciesReference

800675
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species: metaid_0000039
type: SpeciesReference

metaid_0000106
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product: 798547
reactant: 798535
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

798547
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

800110
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species: metaid_0000038
type: SpeciesReference

798027
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species: metaid_0000047
type: SpeciesReference

799462
stoichiometry: 1.0
species: metaid_0000034
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798111
stoichiometry: 1.0
species: metaid_0000047
type: SpeciesReference

800026
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species: metaid_0000058
type: SpeciesReference

797967
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species: metaid_0000029
type: SpeciesReference

798607
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species: metaid_0000041
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metaid_0000122
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reactant: 799269
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

799173
stoichiometry: 1.0
species: metaid_0000037
type: SpeciesReference

metaid_0000061
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product: 795786
reactant: 795774
is version of: GO:0009059
fast: false
reversible: false
type: Reaction

800832
stoichiometry: 1.0
species: metaid_0000060
type: SpeciesReference

796027
stoichiometry: 1.0
species: metaid_0000025
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metaid_0000136
kinetic law: 799990
product: 799978
reactant: 799958
reactant: 799946
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

799910
stoichiometry: 1.0
species: metaid_0000039
type: SpeciesReference

metaid_0000076
reactant: 796654
type: Reaction
product: 796678
reactant: 796666
reversible: false
is version of: GO:0016579
product: 796702
kinetic law: 796714
product: 796690
fast: false

795858
stoichiometry: 1.0
species: metaid_0000056
type: SpeciesReference

797113
stoichiometry: 1.0
species: metaid_0000034
type: SpeciesReference

796375
stoichiometry: 1.0
species: metaid_0000037
type: SpeciesReference

798667
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

799775
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

798751
stoichiometry: 1.0
species: metaid_0000023
type: SpeciesReference

798233
stoichiometry: 1.0
species: metaid_0000048
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796726
stoichiometry: 1.0
species: metaid_0000040
type: SpeciesReference

797883
stoichiometry: 1.0
species: metaid_0000029
type: SpeciesReference

metaid_0000121
kinetic law: 799257
product: 799245
reactant: 799233
reactant: 799221
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

797028
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

metaid_0000062
product: 795858
reversible: false
product: 795834
has version: GO:0022417
product: 795846
reactant: 795810
fast: false
reactant: 795822
type: Reaction
kinetic law: 795870

796171
stoichiometry: 1.0
species: metaid_0000033
type: SpeciesReference

metaid_0000135
kinetic law: 799934
product: 799922
reactant: 799910
reactant: 799897
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

796810
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

799088
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

799873
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

metaid_0000077
reversible: false
reactant: 796738
type: Reaction
reactant: 796726
product: 796762
product: 796774
product: 796750
fast: false
is version of: GO:0016579
kinetic law: 796786

798123
stoichiometry: 7.0
species: metaid_0000024
type: SpeciesReference

798099
stoichiometry: 1.0
species: metaid_0000045
type: SpeciesReference

797955
stoichiometry: 5.0
species: metaid_0000024
type: SpeciesReference

800122
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

796411
stoichiometry: 1.0
species: metaid_0000037
type: SpeciesReference

798039
stoichiometry: 6.0
species: metaid_0000024
type: SpeciesReference

799474
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

800784
stoichiometry: 1.0
species: metaid_0000059
type: SpeciesReference

metaid_0000124
kinetic law: 799402
product: 799390
reactant: 799378
reactant: 799366
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

796039
stoichiometry: 1.0
species: metaid_0000024
type: SpeciesReference

797125
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

metaid_0000088
kinetic law: 797462
product: 797450
reactant: 797438
reactant: 797426
is version of: GO:0005515
fast: false
reversible: false
type: Reaction

799922
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

W3 CDTF: Wed Jul 11 18:41:30 BST 2012

metaid_0000078
type: Reaction
product: 796822
product: 796847
kinetic law: 796859
reversible: false
reactant: 796810
is version of: GO:0016579
reactant: 796798
fast: false
product: 796834

metaid_0000134
kinetic law: 799885
product: 799873
reactant: 799861
reactant: 799849
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

798619
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

797402
stoichiometry: 1.0
species: metaid_0000045
type: SpeciesReference

798763
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

797619
stoichiometry: 1.0
species: metaid_0000044
type: SpeciesReference

796738
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

797895
stoichiometry: 1.0
species: metaid_0000048
type: SpeciesReference

796387
stoichiometry: 1.0
species: metaid_0000026
type: SpeciesReference

798221
stoichiometry: 1.0
species: metaid_0000029
type: SpeciesReference

796822
stoichiometry: 1.0
species: metaid_0000038
type: SpeciesReference

800194
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

799861
stoichiometry: 1.0
species: metaid_0000038
type: SpeciesReference

metaid_0000060
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

metaid_0000123
kinetic law: 799354
product: 799342
reactant: 799330
reactant: 799318
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

metaid_0000089
reversible: false
reactant: 797474
kinetic law: 797535
type: Reaction
fast: false
reactant: 797486
product: 797498
product: 797510
product: 797523
is version of: GO:0016579

796920
stoichiometry: 1.0
species: metaid_0000024
type: SpeciesReference

metaid_0000133
kinetic law: 799837
product: 799825
reactant: 799812
reactant: 799800
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

800579
stoichiometry: 1.0
species: metaid_0000038
type: SpeciesReference

800266
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

796183
stoichiometry: 1.0
species: metaid_0000034
type: SpeciesReference

800771
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

796099
stoichiometry: 1.0
species: metaid_0000026
type: SpeciesReference

798281
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

metaid_0000079
reversible: false
fast: false
product: 796895
type: Reaction
product: 796920
reactant: 796883
kinetic law: 796932
is version of: GO:0016579
product: 796907
reactant: 796871

metaid_0000050
constant: true
boundary condition: true
has only substance units: true
initial concentration: NaN
initial amount: 1.0
in compartment: metaid_0000021
type: Species

797943
stoichiometry: 1.0
species: metaid_0000047
type: SpeciesReference

metaid_0000066
reactant: 796039
product: 796075
kinetic law: 796087
product: 796063
reactant: 796027
reactant: 796051
is version of: GO:0006167
reversible: false
fast: false
is version of: GO:0008641
is version of: GO:0005515
type: Reaction

metaid_0000150
kinetic law: 800663
product: 800651
reactant: 800639
reactant: 800627
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

795894
stoichiometry: 1.0
species: metaid_0000022
type: SpeciesReference

metaid_0000085
kinetic law: 797318
product: 797306
reactant: 797294
reactant: 797282
is version of: GO:0005515
fast: false
reversible: false
type: Reaction

metaid_0000071
reactant: 796351
is version of: GO:0000209
product: 796387
kinetic law: 796399
type: Reaction
reversible: false
product: 796375
fast: false
reactant: 796363

796992
stoichiometry: 1.0
species: metaid_0000024
type: SpeciesReference

metaid_0000112
kinetic law: 798823
product: 798811
reactant: 798799
reactant: 798787
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

799703
stoichiometry: 1.0
species: metaid_0000034
type: SpeciesReference

800639
stoichiometry: 1.0
species: metaid_0000040
type: SpeciesReference

795834
stoichiometry: 1.0
species: metaid_0000023
type: SpeciesReference

797847
stoichiometry: 1.0
species: metaid_0000042
type: SpeciesReference

metaid_0000051
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

metaid_0000132
kinetic law: 799787
product: 799775
reactant: 799763
reactant: 799751
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

metaid_0000086
kinetic law: 797366
product: 797354
reactant: 797342
reactant: 797330
is version of: GO:0005515
fast: false
reversible: false
type: Reaction

798135
stoichiometry: 1.0
species: metaid_0000029
type: SpeciesReference

797438
stoichiometry: 1.0
species: metaid_0000029
type: SpeciesReference

metaid_0000151
kinetic law: 800711
product: 800699
reactant: 800687
reactant: 800675
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

798895
stoichiometry: 1.0
species: metaid_0000023
type: SpeciesReference

metaid_0000067
kinetic law: 796147
reactant: 796111
is version of: GO:0019787
type: Reaction
product: 796135
reactant: 796099
reversible: false
product: 796123
fast: false
is version of: GO:0005515

800254
stoichiometry: 1.0
species: metaid_0000041
type: SpeciesReference

795991
stoichiometry: 1.0
species: metaid_0000023
type: SpeciesReference

798931
stoichiometry: 1.0
species: metaid_0000040
type: SpeciesReference

796063
stoichiometry: 1.0
species: metaid_0000031
type: SpeciesReference

metaid_0000072
type: Reaction
fast: false
reactant: 796411
product: 796435
kinetic law: 796459
reactant: 796423
is version of: GO:0000209
reversible: false
product: 796447

metaid_0000111
kinetic law: 798775
product: 798763
reactant: 798751
reactant: 798739
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

metaid_0000053
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

metaid_0000052
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

799100
stoichiometry: 2.0
species: metaid_0000058
type: SpeciesReference

798643
stoichiometry: 1.0
species: metaid_0000034
type: SpeciesReference

796690
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

796834
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

799667
stoichiometry: 1.0
species: metaid_0000040
type: SpeciesReference

metaid_0000131
kinetic law: 799739
product: 799727
reactant: 799715
reactant: 799703
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

metaid_0000087
kinetic law: 797414
product: 797402
reactant: 797390
reactant: 797378
is version of: GO:0005515
fast: false
reversible: false
type: Reaction

799751
stoichiometry: 1.0
species: metaid_0000035
type: SpeciesReference

metaid_0000152
kinetic law: 800759
product: 800747
reactant: 800735
reactant: 800723
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

799618
stoichiometry: 1.0
species: metaid_0000039
type: SpeciesReference

metaid_0000083
product: 797197
reactant: 797161
type: Reaction
reversible: false
product: 797209
product: 797185
reactant: 797173
fast: false
is version of: GO:0016579
kinetic law: 797222

796630
stoichiometry: 1.0
species: metaid_0000026
type: SpeciesReference

795846
stoichiometry: 1.0
species: metaid_0000030
type: SpeciesReference

799125
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

797101
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

metaid_0000064
type: Reaction
product: 795955
reversible: false
is version of: GO:0004842
kinetic law: 795967
is version of: GO:0005515
fast: false
reactant: 795931
reactant: 795943

797859
stoichiometry: 1.0
species: metaid_0000047
type: SpeciesReference

metaid_0000100
kinetic law: 798342
product: 798330
reactant: 798318
reactant: 798306
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

metaid_0000054
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

797931
stoichiometry: 1.0
species: metaid_0000043
type: SpeciesReference

metaid_0000110
kinetic law: 798727
product: 798715
reactant: 798703
reactant: 798691
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

795882
stoichiometry: 1.0
species: metaid_0000023
type: SpeciesReference

797426
stoichiometry: 1.0
species: metaid_0000041
type: SpeciesReference

800820
stoichiometry: 1.0
species: metaid_0000029
type: SpeciesReference

metaid_0000073
type: Reaction
is version of: GO:0000209
product: 796495
product: 796507
reactant: 796483
fast: false
kinetic law: 796519
reversible: false
reactant: 796471

metaid_0000130
kinetic law: 799691
product: 799679
reactant: 799667
reactant: 799655
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

798147
stoichiometry: 1.0
species: metaid_0000048
type: SpeciesReference

798075
stoichiometry: 1.0
species: metaid_0000053
type: SpeciesReference

metaid_0000063
kinetic law: 795919
product: 795907
product: 795894
reactant: 795882
is version of: GO:0042026
fast: false
reversible: false
type: Reaction

800146
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

metaid_0000120
kinetic law: 799209
product: 799197
reactant: 799185
reactant: 799173
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

796847
stoichiometry: 1.0
species: metaid_0000024
type: SpeciesReference

metaid_0000084
kinetic law: 797270
product: 797258
reactant: 797246
reactant: 797234
is version of: GO:0005515
fast: false
reversible: false
type: Reaction

797390
stoichiometry: 1.0
species: metaid_0000029
type: SpeciesReference

796075
stoichiometry: 1.0
species: metaid_0000049
type: SpeciesReference

797161
stoichiometry: 1.0
species: metaid_0000034
type: SpeciesReference

metaid_0000065
kinetic law: 796015
product: 796003
product: 795991
reactant: 795979
is version of: GO:0043624
fast: false
reversible: false
type: Reaction

metaid_0000055
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

797016
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

800555
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

800242
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

798883
stoichiometry: 1.0
species: metaid_0000039
type: SpeciesReference

799269
stoichiometry: 1.0
species: metaid_0000039
type: SpeciesReference

798943
stoichiometry: 1.0
species: metaid_0000023
type: SpeciesReference

metaid_0000074
product: 796558
reversible: false
product: 796570
kinetic law: 796582
reactant: 796534
reactant: 796546
type: Reaction
is version of: GO:0000209
fast: false

796231
stoichiometry: 1.0
species: metaid_0000034
type: SpeciesReference

metaid_0000075
reactant: 796606
type: Reaction
product: 796618
reversible: false
reactant: 796594
kinetic law: 796642
product: 796630
is version of: GO:0000209
fast: false

799763
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

799606
stoichiometry: 1.0
species: metaid_0000034
type: SpeciesReference

798655
stoichiometry: 1.0
species: metaid_0000023
type: SpeciesReference

799679
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

798438
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

metaid_0000097
type: Reaction
product: 798160
is version of: GO:0008233
product: 798147
reversible: false
kinetic law: 798172
reactant: 798111
reactant: 798099
is version of: GO:0016887
product: 798123
fast: false
product: 798135

796243
stoichiometry: 1.0
species: metaid_0000032
type: SpeciesReference

metaid_0000141
kinetic law: 800230
product: 800218
reactant: 800206
reactant: 800194
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

796303
stoichiometry: 1.0
species: metaid_0000032
type: SpeciesReference

metaid_0000016
notes: This is the inhibiting proteasome activity situlation, k69=0. All the other parameters as in Tables2 and 3. If in the model is in the normal conditions, k69=1e-3.
constant: true
value: 0.0
type: Parameter

800074
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

metaid_0000006
constant: true
value: 4.0E-6
type: Parameter

798799
stoichiometry: 1.0
species: metaid_0000023
type: SpeciesReference

798955
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

metaid_0000056
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

metaid_0000140
kinetic law: 800182
product: 800170
reactant: 800158
reactant: 800146
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

797787
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

metaid_0000096
kinetic law: 798087
is version of: GO:0008233
reactant: 798027
product: 798051
product: 798075
is version of: GO:0016887
type: Reaction
product: 798063
product: 798039
reactant: 798015
fast: false
reversible: false

799051
stoichiometry: 2.0
species: metaid_0000058
type: SpeciesReference

799390
stoichiometry: 2.0
species: metaid_0000058
type: SpeciesReference

797547
stoichiometry: 1.0
species: metaid_0000045
type: SpeciesReference

796507
stoichiometry: 1.0
species: metaid_0000026
type: SpeciesReference

796447
stoichiometry: 1.0
species: metaid_0000026
type: SpeciesReference

metaid_0000017
constant: true
value: 1.0E-8
type: Parameter

799727
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

798366
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

797342
stoichiometry: 1.0
species: metaid_0000029
type: SpeciesReference

metaid_0000142
kinetic law: 800278
product: 800266
reactant: 800254
reactant: 800242
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

800158
stoichiometry: 1.0
species: metaid_0000039
type: SpeciesReference

metaid_0000007
constant: true
value: 1.7E-5
type: Parameter

796159
stoichiometry: 1.0
species: metaid_0000032
type: SpeciesReference

metaid_0000057
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

795810
stoichiometry: 1.0
species: metaid_0000022
type: SpeciesReference

798739
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

800458
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

798691
stoichiometry: 1.0
species: metaid_0000035
type: SpeciesReference

metaid_0000095
product: 797991
reactant: 797931
product: 797955
product: 797979
fast: false
kinetic law: 798003
product: 797967
reversible: false
is version of: GO:0008233
is version of: GO:0016887
type: Reaction
reactant: 797943

795786
stoichiometry: 1.0
species: metaid_0000022
type: SpeciesReference

metaid_0000099
kinetic law: 798294
product: 798281
reactant: 798269
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

796255
stoichiometry: 1.0
species: metaid_0000035
type: SpeciesReference

metaid_0000153
kinetic law: 800796
product: 800784
reactant: 800771
is version of: GO:0051220
fast: false
reversible: false
type: Reaction

796570
stoichiometry: 1.0
species: metaid_0000026
type: SpeciesReference

metaid_0000004
constant: true
value: 0.01
type: Parameter

800062
stoichiometry: 1.0
species: metaid_0000037
type: SpeciesReference

metaid_0000018
constant: true
value: 1.0E-8
type: Parameter

796907
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

799655
stoichiometry: 1.0
species: metaid_0000034
type: SpeciesReference

metaid_0000143
kinetic law: 800326
product: 800314
reactant: 800302
reactant: 800290
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

798426
stoichiometry: 2.0
species: metaid_0000036
type: SpeciesReference

800398
stoichiometry: 1.0
species: metaid_0000040
type: SpeciesReference

796051
stoichiometry: 1.0
species: metaid_0000047
type: SpeciesReference

metaid_0000058
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

metaid_0000068
type: Reaction
fast: false
product: 796207
product: 796195
reactant: 796159
reactant: 796171
reversible: false
kinetic law: 796219
product: 796183
is version of: GO:0006513

798991
stoichiometry: 1.0
species: metaid_0000023
type: SpeciesReference

797775
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

797330
stoichiometry: 1.0
species: metaid_0000039
type: SpeciesReference

metaid_0000098
product: 798245
reactant: 798184
reactant: 798197
is version of: GO:0008233
is version of: GO:0016887
kinetic law: 798257
product: 798233
product: 798209
reversible: false
type: Reaction
product: 798221
fast: false

metaid_0000154
kinetic law: 800844
product: 800832
reactant: 800820
reactant: 800808
is version of: GO:0008539
fast: false
reversible: false
type: Reaction

797691
stoichiometry: 1.0
species: metaid_0000043
type: SpeciesReference

metaid_0000019
constant: true
value: 0.001
type: Parameter

metaid_0000005
constant: true
value: 2.0E-6
type: Parameter

798354
stoichiometry: 2.0
species: metaid_0000034
type: SpeciesReference

799715
stoichiometry: 1.0
species: metaid_0000041
type: SpeciesReference

800627
stoichiometry: 1.0
species: metaid_0000039
type: SpeciesReference

796798
stoichiometry: 1.0
species: metaid_0000039
type: SpeciesReference

metaid_0000144
kinetic law: 800374
product: 800362
reactant: 800350
reactant: 800338
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

795822
stoichiometry: 1.0
species: metaid_0000030
type: SpeciesReference

796980
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

800446
stoichiometry: 1.0
species: metaid_0000041
type: SpeciesReference

795774
stoichiometry: 1.0
species: metaid_0000050
type: SpeciesReference

metaid_0000059
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000021
type: Species

metaid_0000069
reactant: 796243
product: 796267
fast: false
reactant: 796231
kinetic law: 796279
product: 796255
type: Reaction
reversible: false
is version of: GO:0000209

797763
stoichiometry: 1.0
species: metaid_0000042
type: SpeciesReference

796195
stoichiometry: 1.0
species: metaid_0000026
type: SpeciesReference

796327
stoichiometry: 1.0
species: metaid_0000026
type: SpeciesReference

metaid_0000145
kinetic law: 800422
product: 800410
reactant: 800398
reactant: 800386
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

799075
stoichiometry: 1.0
species: metaid_0000035
type: SpeciesReference

800386
stoichiometry: 1.0
species: metaid_0000037
type: SpeciesReference

796267
stoichiometry: 1.0
species: metaid_0000026
type: SpeciesReference

798979
stoichiometry: 1.0
species: metaid_0000041
type: SpeciesReference

800506
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

800098
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

796351
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

796702
stoichiometry: 1.0
species: metaid_0000024
type: SpeciesReference

799197
stoichiometry: 2.0
species: metaid_0000058
type: SpeciesReference

metaid_0000146
kinetic law: 800470
product: 800458
reactant: 800446
reactant: 800434
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

797486
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

797137
stoichiometry: 1.0
species: metaid_0000024
type: SpeciesReference

800434
stoichiometry: 1.0
species: metaid_0000037
type: SpeciesReference

795762
exponent: 1.0
scale: 0
multipler: 1.0
kind: ITEM
type: SBMLUnit

799582
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

796423
stoichiometry: 1.0
species: metaid_0000032
type: SpeciesReference

799486
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

800002
stoichiometry: 1.0
species: metaid_0000035
type: SpeciesReference

metaid_0000147
kinetic law: 800519
product: 800506
reactant: 800494
reactant: 800482
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

metaid_0000008
constant: true
value: 2.0E-4
type: Parameter

800410
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

796315
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

797871
stoichiometry: 4.0
species: metaid_0000024
type: SpeciesReference

798787
stoichiometry: 1.0
species: metaid_0000037
type: SpeciesReference

796363
stoichiometry: 1.0
species: metaid_0000032
type: SpeciesReference

799631
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

metaid_0000028
is version of: IPR001394
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 200.0
in compartment: metaid_0000021
type: Species

797559
stoichiometry: 1.0
species: metaid_0000028
type: SpeciesReference

metaid_0000009
constant: true
value: 2.0E-4
type: Parameter

metaid_0000148
kinetic law: 800567
product: 800555
reactant: 800543
reactant: 800531
is version of: GO:0006461
fast: false
reversible: false
type: Reaction

798390
stoichiometry: 2.0
species: metaid_0000035
type: SpeciesReference

799185
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

797498
stoichiometry: 1.0
species: metaid_0000045
type: SpeciesReference

800014
stoichiometry: 1.0
species: metaid_0000041
type: SpeciesReference

798330
stoichiometry: 2.0
species: metaid_0000058
type: SpeciesReference

796435
stoichiometry: 1.0
species: metaid_0000038
type: SpeciesReference

metaid_0000029
is version of: GO:0000502
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 100.0
in compartment: metaid_0000021
type: Species

798015
stoichiometry: 1.0
species: metaid_0000044
type: SpeciesReference

796774
stoichiometry: 1.0
species: metaid_0000024
type: SpeciesReference

799570
stoichiometry: 1.0
species: metaid_0000038
type: SpeciesReference

800603
stoichiometry: 1.0
species: metaid_0000058
type: SpeciesReference

given: Carole
family: Proctor

orgname: University of Newcastle

W3 CDTF: Mon Apr 02 10:08:41 BST 2007