705243
kinetic law: 516652
reactant: 516640
is version of: GO:0009070
fast: false
reversible: true
name: Serine synthesis
type: Reaction

515533
units: metaid_0000090
value: 0.0136
type: LocalParameter

517585
units: dimensionless
value: 1.4
type: LocalParameter

517839
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

705763
kinetic law: 518267
reactant: 518255
fast: false
reversible: true
name: PG dilution
type: Reaction

705343
kinetic law: 517097
reactant: 517085
is version of: GO:0009423
fast: false
reversible: true
name: Synthesis 1
type: Reaction

516543
stoichiometry: 1.0
species: 704863
type: SpeciesReference

705363
kinetic law: 517145
reactant: 517133
has part: GO:0019877
has part: GO:0009097
has part: GO:0006523
fast: false
reversible: true
name: Synthesis 2
type: Reaction

704843
has only substance units: false
is: C00236
constant: false
initial concentration: 0.008
boundary condition: false
initial amount: NaN
name: 1,3-diphosphosphoglycerate
type: Species
in compartment: metaid_0000088
is: CHEBI:16001

705263
is: R01518
is version of: http://identifiers.org/ec-code/5.4.2.1
reactant: 516688
product: 516700
type: Reaction
reversible: true
kinetic law: 516712
name: Phosphoglycerate mutase
is homolog to: REACT 576
fast: false

517133
stoichiometry: 1.0
species: 704623
type: SpeciesReference

705223
is: R01512
reactant: 516531
type: Reaction
name: Phosphoglycerate kinase
is version of: http://identifiers.org/ec-code/2.7.2.3
product: 516543
reversible: true
fast: false
is homolog to: REACT 1186
kinetic law: 516555

704643
initial concentration: 0.6
has only substance units: false
is version of: CHEBI:15946
is: C05345
name: Fructose-6-Phosphate
type: Species
boundary condition: false
is version of: C00085
in compartment: metaid_0000088
constant: false
initial amount: NaN

515991
stoichiometry: 1.0
species: 704763
type: SpeciesReference

515196
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND
type: SBMLUnit

515280
units: metaid_0000090
value: 3082.3
type: LocalParameter

516808
units: metaid_0000092
value: 330.4476151
type: LocalParameter

515328
units: metaid_0000090
value: 2.15
type: LocalParameter

517048
units: metaid_0000090
value: 0.7
type: LocalParameter

705203
kinetic law: 516495
reactant: 516483
is version of: http://identifiers.org/ec-code/1.1.1.8
is: R00842
is homolog to: REACT_16938
fast: false
reversible: true
name: Glycerol-3-phosphate dehydrogenase
type: Reaction

515834
stoichiometry: 1.0
species: 704723
type: SpeciesReference

518279
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

517961
stoichiometry: 1.0
species: 704863
type: SpeciesReference

705063
product: 515942
reactant: 515918
name: Transketolase a
reversible: true
product: 515930
is: R01641
type: Reaction
is version of: http://identifiers.org/ec-code/2.2.1.1
reactant: 515906
kinetic law: 515954
is homolog to: REACT 162
fast: false

517573
units: metaid_0000091
value: 6.739029475
type: LocalParameter

515521
units: metaid_0000090
value: 1.038
type: LocalParameter

517876
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

705043
is homolog to: REACT 1272
name: Transaldolase
reactant: 515834
reactant: 515822
kinetic law: 515870
reversible: true
product: 515846
is version of: http://identifiers.org/ec-code/2.2.1.2
fast: false
product: 515858
type: Reaction
is: R01827

516531
stoichiometry: 1.0
species: 704843
type: SpeciesReference

BIOMD0000000051
reaction: 705163
parameter: metaid_0000081
rule: metaid_0000086
reaction: 704963
species: 704883
reaction: 705063
area units: area
reaction: 705443
has part: GO:0006098
reaction: 705403
reaction: 705083
reaction: 705243
reaction: 705203
notes: The model reproduces Figures 4,5 and 6 of the publication. The analytical functions for cometabolites Catp, Camp, Cnadph, and Cnadp slightly differ from the equations given in the paper. These changes were made in consultation with Dr. Christophe Chassagnole and are essential for reproducing the figures. The dependency of the rate of change of extracellular glucose concentration on the ratio of biomass concentration to specific weight of biomass (Cx*rPTS/Rhox) is taken into account by appropriately adjusting the stoichiometries of the species involved in the phosphotransferase system (rPTS). The rmax values for the various reactions are obtained from experiments and are not provided in the paper. However, these were personally communicated to the JWS repository. The model has been successfully tested on MathSBML. SBML level 2 code generated for the JWS Online project by Jacky Snoep using PySCeS Run this model online at http://jjj.biochem.sun.ac.za To cite JWS Online please refer to: Olivier, B.G. and Snoep, J.L. (2004) Web-based modelling using JWS Online , Bioinformatics, 20:2143-2144 To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information. In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not. To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.
species: 704623
reaction: 705783
reaction: 705663
length unit: length
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type: SBMLModel
reaction: 705703
rule: metaid_0000083
species: 704743
reaction: 705684
units def: metaid_0000089
compartment: 704545
reaction: 705463
parameter: metaid_0000078
name: Chassagnole2002_Carbon_Metabolism
has part: GO:0009401
species: 704863
rule: metaid_0000085
is described by: http://identifiers.org/pubmed/17590932
reaction: 705503
reaction: 705603
reaction: 705283
reaction: 705043
parameter: metaid_0000079
reaction: 705363
substance units: metaid_0000089
units def: metaid_0010092
reaction: 705143
reaction: 705103
reaction: 705343
reaction: 705263
species: 704583
reaction: 705223
species: 704903
parameter: metaid_0000076
reaction: 704983
reaction: 705123
has part: map00030
reaction: 705823
rule: metaid_0000084
units def: metaid_0000092
units def: metaid_0000090
has part: map00010
reaction: 705763
reaction: 705483
rule: metaid_0000082
rule: metaid_0000087
reaction: 705723
rule: metaid_0000074
reaction: 705643
reaction: 705645
species: 704683
reaction: 705743
reaction: 705383
species: 704643
occurs in: http://identifiers.org/taxonomy/562
reaction: 705003
species: 704803
reaction: 705623
species: 704563
reaction: 705183
is: MODEL6624119661
species: 704783
has part: GO:0006096
species: 704723

705823
kinetic law: 518382
product: 518369
fast: false
reversible: true
name: Extracellular glucose kinetics
type: Reaction

705083
type: Reaction
reversible: true
kinetic law: 516039
product: 516027
is: R01067
is version of: http://identifiers.org/ec-code/2.2.1.1
name: Transketolase b
fast: false
reactant: 515991
product: 516015
is homolog to: REACT 1811
reactant: 516003

515292
units: metaid_0000090
value: 0.01
type: LocalParameter

515268
units: metaid_0000092
value: 7829.78
type: LocalParameter

515846
stoichiometry: 1.0
species: 704643
type: SpeciesReference

516567
units: metaid_0000092
value: 3021.773771
type: LocalParameter

704963
is version of: http://identifiers.org/ec-code/5.3.1.9
modifier: 515364
fast: false
name: Glucose-6-phosphate isomerase
is: R00771
reversible: true
reactant: 515340
kinetic law: 515376
is homolog to: REACT 1255
product: 515352
type: Reaction
is version of: GO:0004347

516604
units: metaid_0000090
value: 0.653
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517888
stoichiometry: 1.0
species: 704823
type: SpeciesReference

515918
stoichiometry: 1.0
species: 704783
type: SpeciesReference

704943
kinetic law: 515256
reactant: 515220
product: 515244
product: 515232
reversible: true
type: Reaction
name: Phosphotransferase system
fast: false
reactant: 515208
is: eco02060

517815
stoichiometry: 1.0
species: 704703
type: SpeciesReference

516399
units: dimensionless
value: 1.39
type: LocalParameter

516219
units: metaid_0000090
value: 0.088
type: LocalParameter

518317
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

705563
kinetic law: 517827
reactant: 517815
is version of: GO:0044275
fast: false
reversible: true
name: FDP degradation
type: Reaction

704983
is version of: http://identifiers.org/ec-code/5.4.2.2
is: R00959
kinetic law: 515485
name: Phosphoglucomutase
reactant: 515461
type: Reaction
is homolog to: REACT 605
product: 515473
fast: false
reversible: true

516519
units: metaid_0000090
value: 1.0
type: LocalParameter

515810
units: dimensionless
value: 11.1
type: LocalParameter

515738
units: metaid_0000090
value: 3.26
type: LocalParameter

515593
units: metaid_0000090
value: 14.4
type: LocalParameter

518395
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

517779
stoichiometry: 1.0
species: 704643
type: SpeciesReference

517182
stoichiometry: 1.0
species: 704763
type: SpeciesReference

705103
kinetic law: 516087
reactant: 516075
is version of: GO:0006002
fast: false
reversible: true
name: Mureine synthesis
type: Reaction

517121
units: metaid_0000090
value: 1.0
type: LocalParameter

516471
units: metaid_0000092
value: 0.001037
type: LocalParameter

517985
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

515906
stoichiometry: 1.0
species: 704803
type: SpeciesReference

516207
units: dimensionless
value: 2.0
type: LocalParameter

515822
stoichiometry: 1.0
species: 704743
type: SpeciesReference

515726
units: metaid_0000090
value: 0.325
type: LocalParameter

517451
units: metaid_0000090
value: 0.0138
type: LocalParameter

705183
kinetic law: 516459
product: 516447
product: 516435
is version of: GO:0000162
fast: false
reversible: true
name: Tryptophan synthesis
type: Reaction

517036
units: metaid_0000092
value: 0.1070205858
type: LocalParameter

516507
units: metaid_0000092
value: 0.01162042696
type: LocalParameter

705123
is version of: http://identifiers.org/ec-code/4.1.2.13
is: R01070
fast: false
is homolog to: REACT 1602
reactant: 516111
kinetic law: 516147
reversible: true
type: Reaction
name: Aldolase
product: 516135
product: 516123

705163
is homolog to: REACT 469
reversible: true
name: Triosephosphate isomerase
type: Reaction
is version of: http://identifiers.org/ec-code/5.3.1.1
fast: false
kinetic law: 516375
reactant: 516351
product: 516363
is: R01015

705143
kinetic law: 516267
is homolog to: REACT 1847
type: Reaction
fast: false
reversible: true
name: Glyceraldehyde-3-phosphate dehydrogenase
is version of: http://identifiers.org/ec-code/1.2.1.12
reactant: 516243
is: R01061
product: 516255

515244
stoichiometry: 65.0
species: 704623
type: SpeciesReference

515232
stoichiometry: 65.0
species: 704603
type: SpeciesReference

516988
units: metaid_0000090
value: 0.26
type: LocalParameter

515148
exponent: -1.0
scale: 0
multipler: 1.0
kind: LITRE
type: SBMLUnit

705423
kinetic law: 517355
product: 517343
is version of: GO:0042866
fast: false
reversible: true
name: Methionine synthesis
type: Reaction

517731
units: metaid_0000090
value: 3.2
type: LocalParameter

704863
name: 3-Phosphoglycerate
is: C00197
constant: false
is: CHEBI:17794
has only substance units: false
initial concentration: 2.13
initial amount: NaN
boundary condition: false
type: Species
in compartment: metaid_0000088

516784
stoichiometry: 1.0
species: 704563
type: SpeciesReference

515774
units: metaid_0000090
value: 128.0
type: LocalParameter

705443
product: 517391
fast: false
is version of: http://identifiers.org/ec-code/1.1.1.44
is: R01528
kinetic law: 517403
is homolog to: REACT 611
reversible: true
name: 6-Phosphogluconate dehydrogenase
reactant: 517379
type: Reaction

517000
stoichiometry: 1.0
species: 704563
type: SpeciesReference

704763
type: Species
in compartment: metaid_0000088
has only substance units: false
initial concentration: 0.098
initial amount: NaN
name: Erythrose-4-phosphate
boundary condition: false
is: C00279
constant: false
is: CHEBI:48153

516676
units: metaid_0000090
value: 1.0
type: LocalParameter

704663
name: Glucose-1-Phosphate
boundary condition: false
initial concentration: 0.653
type: Species
is: C00103
is: CHEBI:16077
has only substance units: false
constant: false
initial amount: NaN
in compartment: metaid_0000088

704563
has only substance units: false
initial amount: NaN
type: Species
is: CHEBI:18021
name: Phosphoenol pyruvate
is: C00074
constant: false
boundary condition: false
initial concentration: 2.67
in compartment: metaid_0000088

517379
stoichiometry: 1.0
species: 704683
type: SpeciesReference

705504
kinetic law: 517671
modifier: 517659
reactant: 517647
is version of: http://identifiers.org/ec-code/2.7.7.27
is: R00948
fast: false
reversible: true
name: Glucose-1-phosphate adenyltransferase
type: Reaction

704623
boundary condition: false
type: Species
initial concentration: 2.67
is: C00022
initial amount: NaN
in compartment: metaid_0000088
is: CHEBI:15361
constant: false
name: Pyruvate
has only substance units: false

517415
units: metaid_0000092
value: 16.23235977
type: LocalParameter

517707
units: metaid_0000090
value: 1.2
type: LocalParameter

515701
units: metaid_0000090
value: 0.123
type: LocalParameter

516628
units: metaid_0000090
value: 0.473
type: LocalParameter

515136
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE
type: SBMLUnit

516027
stoichiometry: 1.0
species: 704643
type: SpeciesReference

515160
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND
type: SBMLUnit

705503
kinetic law: 517611
reactant: 517598
is homolog to: REACT 2023
is version of: http://identifiers.org/ec-code/2.7.6.1
is: R01049
fast: false
reversible: true
name: Ribose phosphate pyrophosphokinase
type: Reaction

515220
stoichiometry: 65.0
species: 704563
type: SpeciesReference

516664
units: metaid_0000092
value: 0.025712107
type: LocalParameter

705003
name: Glucose-6-phosphate dehydrogenase
has part: R02035
reversible: true
type: Reaction
has part: http://identifiers.org/ec-code/1.1.1.49
kinetic law: 515569
has part: http://identifiers.org/ec-code/3.1.1.31
reactant: 515545
product: 515557
has part: R00835
fast: false

517743
stoichiometry: 1.0
species: 704603
type: SpeciesReference

516772
stoichiometry: 1.0
species: 704883
type: SpeciesReference

515786
units: metaid_0000090
value: 19.1
type: LocalParameter

704823
type: Species
is: CHEBI:16108
has only substance units: false
in compartment: metaid_0000088
initial concentration: 0.167
initial amount: NaN
boundary condition: false
constant: false
name: Dihydroxyacetonephosphate
is: C00111

517719
units: metaid_0000090
value: 4.42
type: LocalParameter

517803
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

516387
units: metaid_0000092
value: 68.67474392
type: LocalParameter

516616
units: metaid_0000090
value: 0.0468
type: LocalParameter

515713
units: metaid_0000090
value: 4.14
type: LocalParameter

515798
units: dimensionless
value: 5629067.0
type: LocalParameter

516760
units: metaid_0000090
value: 0.369
type: LocalParameter

515858
stoichiometry: 1.0
species: 704763
type: SpeciesReference

metaid_0000090
unit: 515112
unit: 515099
name: milli Molar
type: SBMLUnitsDef

515172
exponent: -1.0
scale: -3
multipler: 1.0
kind: MOLE
type: SBMLUnit

517219
units: metaid_0000092
value: 0.1079531227
type: LocalParameter

516015
stoichiometry: 1.0
species: 704743
type: SpeciesReference

515124
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND
type: SBMLUnit

705543
kinetic law: 517791
reactant: 517779
is version of: GO:0044275
fast: false
reversible: true
name: F6P degradation
type: Reaction

705583
kinetic law: 517863
reactant: 517851
is version of: GO:0019683
fast: false
reversible: true
name: GAP degradation
type: Reaction

705645
kinetic law: 518009
reactant: 517997
is version of: GO:0044275
fast: false
reversible: true
name: PG2 degradation
type: Reaction

516964
units: metaid_0000090
value: 0.19
type: LocalParameter

517157
units: metaid_0000092
value: 0.07361855055
type: LocalParameter

704903
constant: false
is: CHEBI:17363
initial concentration: 0.111
initial amount: NaN
type: Species
has only substance units: false
name: Ribulose-5-phosphate
boundary condition: false
in compartment: metaid_0000088
is: C00199

515509
units: dimensionless
value: 0.196
type: LocalParameter

516351
stoichiometry: 1.0
species: 704823
type: SpeciesReference

517695
units: metaid_0000090
value: 0.119
type: LocalParameter

516688
stoichiometry: 1.0
species: 704863
type: SpeciesReference

518216
stoichiometry: 1.0
species: 704623
type: SpeciesReference

516820
units: metaid_0000090
value: 6.73
type: LocalParameter

517767
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

516291
units: dimensionless
value: 0.63
type: LocalParameter

metaid_0000092
unit: 515160
unit: 515148
unit: 515136
name: mM per second
type: SBMLUnitsDef

515112
exponent: -1.0
scale: 0
multipler: 1.0
kind: LITRE
type: SBMLUnit

516003
stoichiometry: 1.0
species: 704783
type: SpeciesReference

517598
stoichiometry: 1.0
species: 704803
type: SpeciesReference

516976
units: metaid_0000090
value: 0.2
type: LocalParameter

515184
exponent: 1.0
scale: 0
multipler: 1.0
kind: LITRE
type: SBMLUnit

705643
kinetic law: 517973
reactant: 517961
is version of: GO:0044275
fast: false
reversible: true
name: PG3 degradation
type: Reaction

517169
units: metaid_0000090
value: 1.0
type: LocalParameter

518203
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

517109
units: metaid_0000092
value: 0.01953897003
type: LocalParameter

metaid_0000091
unit: 515124
name: second inverse
type: SBMLUnitsDef

517683
units: metaid_0000092
value: 0.007525458026
type: LocalParameter

516363
stoichiometry: 1.0
species: 704743
type: SpeciesReference

515545
stoichiometry: 1.0
species: 704603
type: SpeciesReference

515449
units: metaid_0000090
value: 0.2
type: LocalParameter

517549
stoichiometry: 1.0
species: 704783
type: SpeciesReference

515641
stoichiometry: 1.0
species: 704643
type: SpeciesReference

metaid_0000089
unit: 515087
name: millimole
type: SBMLUnitsDef

516952
units: metaid_0000090
value: 22.5
type: LocalParameter

705723
kinetic law: 518190
reactant: 518178
fast: false
reversible: true
name: SED7P dilution
type: Reaction

705623
kinetic law: 517937
reactant: 517925
is version of: GO:0044275
fast: false
reversible: true
name: PGP degradation
type: Reaction

516856
stoichiometry: 1.0
species: 704563
type: SpeciesReference

516243
stoichiometry: 1.0
species: 704743
type: SpeciesReference

metaid_0000079
constant: false
units: metaid_0000090
value: 0.062
type: Parameter

516195
units: metaid_0000090
value: 0.088
type: LocalParameter

516640
stoichiometry: 1.0
species: 704863
type: SpeciesReference

517913
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

518069
stoichiometry: 1.0
species: 704903
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515352
stoichiometry: 1.0
species: 704643
type: SpeciesReference

704683
initial amount: NaN
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type: Species
boundary condition: false
has only substance units: false
name: 6-Phosphogluconate
is: C00345
is: CHEBI:16863
initial concentration: 0.808
in compartment: metaid_0000088

704783
boundary condition: false
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type: Species
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is: CHEBI:16332
is: C00231
constant: false
has only substance units: false
initial amount: NaN
name: Xylulose-5-phosphate

704803
initial amount: NaN
is: CHEBI:17797
name: Ribose-5-phosphate
type: Species
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initial concentration: 0.398
has only substance units: false
boundary condition: false
in compartment: metaid_0000088
is: C00117

515557
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518291
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species: 704763
type: SpeciesReference

517073
units: metaid_0000090
value: 4.07
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517537
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species: 704903
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515653
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species: 704703
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515437
units: metaid_0000090
value: 0.2
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516748
units: metaid_0000090
value: 0.2
type: LocalParameter

704545
is: GO:0005576
constant: true
size: 1.0
spatial dimensions: 3.0
type: Compartment

516255
stoichiometry: 1.0
species: 704843
type: SpeciesReference

516159
units: metaid_0000092
value: 17.41464425
type: LocalParameter

517488
stoichiometry: 1.0
species: 704803
type: SpeciesReference

516868
stoichiometry: 1.0
species: 704623
type: SpeciesReference

517060
units: dimensionless
value: 4.21
type: LocalParameter

516940
units: dimensionless
value: 1000.0
type: LocalParameter

metaid_0000077
constant: false
units: metaid_0000090
value: 0.955
type: Parameter

705383
kinetic law: 517207
reactant: 517194
reactant: 517182
is version of: http://identifiers.org/ec-code/2.5.1.54
is: R01826
fast: false
reversible: true
name: DAHP synthesis
type: Reaction

705323
kinetic law: 517024
modifier: 517012
reactant: 517000
is version of: http://identifiers.org/ec-code/4.1.1.31
is: R00345
fast: false
reversible: true
name: PEP carboxylase
type: Reaction

704743
has only substance units: false
initial concentration: 0.218
type: Species
is: CHEBI:17138
in compartment: metaid_0000088
constant: false
is: C00661
boundary condition: false
initial amount: NaN
name: Glyceraldehyde-3-Phosphate

704883
initial amount: NaN
name: 2-Phosphoglycerate
initial concentration: 0.399
boundary condition: false
in compartment: metaid_0000088
type: Species
has only substance units: false
is: CHEBI:17835
constant: false
is: C00631

704703
initial concentration: 0.272
is: CHEBI:16905
is: C00354
constant: false
name: Fructose-1,6-bisphosphate
boundary condition: false
type: Species
initial amount: NaN
in compartment: metaid_0000088
has only substance units: false

705303
is homolog to: REACT 1524
name: Pyruvate kinase
kinetic law: 516892
is: R00200
modifier: 516880
product: 516868
reversible: true
is version of: http://identifiers.org/ec-code/2.7.1.40
reactant: 516856
fast: false
type: Reaction

metaid_0000078
constant: false
units: metaid_0000090
value: 0.195
type: Parameter

518165
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

516832
units: metaid_0000090
value: 0.1
type: LocalParameter

517524
units: dimensionless
value: 4.0
type: LocalParameter

516171
units: metaid_0000090
value: 0.144
type: LocalParameter

517476
stoichiometry: 1.0
species: 704903
type: SpeciesReference

515425
units: metaid_0000090
value: 0.266
type: LocalParameter

516916
units: metaid_0000090
value: 0.31
type: LocalParameter

704603
type: Species
is: CHEBI:17665
boundary condition: false
constant: false
in compartment: metaid_0000088
is: C00668
has only substance units: false
name: Glucose-6-Phosphate
initial concentration: 3.48
initial amount: NaN

517427
units: metaid_0000090
value: 37.5
type: LocalParameter

515762
units: metaid_0000090
value: 3.2
type: LocalParameter

516447
stoichiometry: 1.0
species: 704743
type: SpeciesReference

metaid_0000076
constant: false
units: metaid_0000090
value: 0.595
type: Parameter

705523
kinetic law: 517755
reactant: 517743
is version of: GO:0044275
fast: false
reversible: true
name: G6P degradation
type: Reaction

516303
units: metaid_0000090
value: 0.683
type: LocalParameter

517623
units: metaid_0000092
value: 0.01290045226
type: LocalParameter

516099
units: metaid_0000092
value: 4.3711E-4
type: LocalParameter

518369
stoichiometry: 1.0
species: 704583
type: SpeciesReference

516135
stoichiometry: 1.0
species: 704743
type: SpeciesReference

516844
units: metaid_0000090
value: 0.135
type: LocalParameter

516183
units: metaid_0000090
value: 1.75
type: LocalParameter

516231
units: metaid_0000090
value: 0.6
type: LocalParameter

517464
units: metaid_0000090
value: 208.0
type: LocalParameter

705663
kinetic law: 518045
reactant: 518033
is version of: GO:0046395
fast: false
reversible: true
name: PEP degradation
type: Reaction

517512
units: metaid_0000091
value: 4.83841193
type: LocalParameter

metaid_0000073
constant: false
units: metaid_0000090
value: 4.27
type: Parameter

704583
is version of: C00293
constant: false
has only substance units: false
is: C00031
is: CHEBI:4167
name: Extracellular Glucose
initial amount: NaN
initial concentration: 2.0
in compartment: 704545
type: Species
boundary condition: false
is version of: CHEBI:17234

516904
units: metaid_0000092
value: 0.06113150238
type: LocalParameter

518408
units: metaid_0000090
value: 110.96
type: LocalParameter

517085
stoichiometry: 1.0
species: 704563
type: SpeciesReference

517439
units: metaid_0000090
value: 0.0506
type: LocalParameter

515750
units: metaid_0000090
value: 3.89
type: LocalParameter

515413
units: metaid_0000090
value: 2.9
type: LocalParameter

515340
stoichiometry: 1.0
species: 704603
type: SpeciesReference

518057
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

518356
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

518141
stoichiometry: 1.0
species: 704783
type: SpeciesReference

517635
units: metaid_0000090
value: 0.1
type: LocalParameter

518093
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

517925
stoichiometry: 1.0
species: 704843
type: SpeciesReference

metaid_0000088
is: GO:0005829
constant: true
size: 1.0
spatial dimensions: 3.0
type: Compartment

705403
kinetic law: 517295
reactant: 517280
is part of: rn00620
is: R00209
is version of: http://identifiers.org/ec-code/1.2.1.51
fast: false
reversible: true
name: Pyruvate dehydrogenase
type: Reaction

515099
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE
type: SBMLUnit

515316
units: dimensionless
value: 3.66
type: LocalParameter

515979
units: dimensionless
value: 1.2
type: LocalParameter

metaid_0000081
constant: false
units: metaid_0000090
value: 0.1
type: Parameter

515689
units: metaid_0000092
value: 1840.584747
type: LocalParameter

517319
units: dimensionless
value: 3.68
type: LocalParameter

517367
units: metaid_0000092
value: 0.0022627
type: LocalParameter

705603
kinetic law: 517901
reactant: 517888
is version of: GO:0044275
fast: false
reversible: true
name: DHAP degradation
type: Reaction

517391
stoichiometry: 1.0
species: 704903
type: SpeciesReference

515401
units: dimensionless
value: 0.1725
type: LocalParameter

518021
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

516423
units: metaid_0000090
value: 0.3
type: LocalParameter

515629
units: metaid_0000090
value: 0.01
type: LocalParameter

705743
kinetic law: 518229
reactant: 518216
fast: false
reversible: true
name: Pyruvate dilution
type: Reaction

518105
stoichiometry: 1.0
species: 704803
type: SpeciesReference

516339
units: metaid_0000090
value: 1.09
type: LocalParameter

705703
kinetic law: 518153
reactant: 518141
fast: false
reversible: true
name: XYL5P dilution
type: Reaction

516063
units: dimensionless
value: 10.0
type: LocalParameter

517647
stoichiometry: 1.0
species: 704663
type: SpeciesReference

516123
stoichiometry: 1.0
species: 704823
type: SpeciesReference

515304
units: dimensionless
value: 245.3
type: LocalParameter

517949
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

517268
units: metaid_0000090
value: 0.0053
type: LocalParameter

515208
stoichiometry: 1.0
species: 704583
type: SpeciesReference

516315
units: metaid_0000090
value: 1.04E-5
type: LocalParameter

515087
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE
type: SBMLUnit

516435
stoichiometry: 1.0
species: 704623
type: SpeciesReference

518033
stoichiometry: 1.0
species: 704563
type: SpeciesReference

516700
stoichiometry: 1.0
species: 704883
type: SpeciesReference

517280
stoichiometry: 1.0
species: 704623
type: SpeciesReference

705803
kinetic law: 518343
reactant: 518330
fast: false
reversible: true
name: GLP dilution
type: Reaction

515966
units: metaid_0010092
value: 9.473384783
type: LocalParameter

515617
units: metaid_0000090
value: 0.0246
type: LocalParameter

516928
units: dimensionless
value: 4.0
type: LocalParameter

516483
stoichiometry: 1.0
species: 704823
type: SpeciesReference

705483
fast: false
reactant: 517537
kinetic law: 517561
is version of: http://identifiers.org/ec-code/5.1.3.1
type: Reaction
is: R01529
name: Ribulose-phosphate epimerase
reversible: true
is homolog to: REACT 1522
product: 517549

704723
initial concentration: 0.276
is: CHEBI:15721
in compartment: metaid_0000088
name: sedoheptulose-7-phosphate
boundary condition: false
initial amount: NaN
has only substance units: false
constant: false
type: Species
is: C00281

516592
units: metaid_0000090
value: 0.185
type: LocalParameter

705463
reactant: 517476
reversible: true
is version of: http://identifiers.org/ec-code/5.3.1.6
kinetic law: 517500
name: Ribose-phosphate isomerase
product: 517488
fast: false
is homolog to: REACT 6907
type: Reaction
is: R01056

516111
stoichiometry: 1.0
species: 704703
type: SpeciesReference

515497
units: metaid_0000092
value: 0.8398242773
type: LocalParameter

516075
stoichiometry: 2.0
species: 704643
type: SpeciesReference

517194
stoichiometry: 1.0
species: 704563
type: SpeciesReference

515581
units: metaid_0000092
value: 1.380196955
type: LocalParameter

515894
units: dimensionless
value: 1.05
type: LocalParameter

517343
stoichiometry: 1.0
species: 704623
type: SpeciesReference

515930
stoichiometry: 1.0
species: 704743
type: SpeciesReference

517256
units: metaid_0000090
value: 0.035
type: LocalParameter

518330
stoichiometry: 1.0
species: 704663
type: SpeciesReference

517231
units: dimensionless
value: 2.6
type: LocalParameter

705023
modifier: 515665
reactant: 515641
type: Reaction
fast: false
name: Phosphofructokinase
product: 515653
kinetic law: 515677
is homolog to: REACT 736
is: R00756
is version of: http://identifiers.org/ec-code/2.7.1.11
reversible: true

515461
stoichiometry: 1.0
species: 704603
type: SpeciesReference

518178
stoichiometry: 1.0
species: 704723
type: SpeciesReference

518255
stoichiometry: 1.0
species: 704683
type: SpeciesReference

516736
units: dimensionless
value: 0.188
type: LocalParameter

515605
units: metaid_0000090
value: 6.43
type: LocalParameter

517243
units: dimensionless
value: 2.2
type: LocalParameter

516580
units: dimensionless
value: 1934.4
type: LocalParameter

518129
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

516411
units: metaid_0000090
value: 2.8
type: LocalParameter

515882
units: metaid_0010092
value: 10.87164108
type: LocalParameter

517307
units: metaid_0000092
value: 6.059531017
type: LocalParameter

515388
units: metaid_0000092
value: 650.9878687
type: LocalParameter

517331
units: metaid_0000090
value: 1159.0
type: LocalParameter

517851
stoichiometry: 1.0
species: 704743
type: SpeciesReference

705684
kinetic law: 518117
reactant: 518105
fast: false
reversible: true
name: Rib5P dilution
type: Reaction

518242
units: metaid_0000091
value: 2.78E-5
type: LocalParameter

515473
stoichiometry: 1.0
species: 704663
type: SpeciesReference

516279
units: metaid_0000092
value: 921.5942861
type: LocalParameter

metaid_0000080
constant: false
units: metaid_0000090
value: 1.47
type: Parameter

516051
units: metaid_0010092
value: 86.55855855
type: LocalParameter

517997
stoichiometry: 1.0
species: 704883
type: SpeciesReference

705283
is version of: http://identifiers.org/ec-code/4.2.1.11
type: Reaction
name: Enolase
product: 516784
is homolog to: REACT 1400
is: R00658
reversible: true
reactant: 516772
kinetic law: 516796
fast: false

516327
units: metaid_0000090
value: 0.252
type: LocalParameter

515942
stoichiometry: 1.0
species: 704723
type: SpeciesReference

705783
kinetic law: 518304
reactant: 518291
fast: false
reversible: true
name: E4P dilution
type: Reaction

516724
units: metaid_0000092
value: 89.04965407
type: LocalParameter

metaid_0010092
unit: 515196
unit: 515184
unit: 515172
name: per mM per second
type: SBMLUnitsDef

705683
kinetic law: 518081
reactant: 518069
fast: false
reversible: true
name: Ribu5P dilution
type: Reaction

given: Jacky L
family: Snoep

orgname: Stellenbosh University

orgname: California Institute of Technology

W3 CDTF: Wed Jan 18 22:51:54 GMT 2006

n:
  given: Harish
  family: Dharuri

W3 CDTF: Wed Aug 01 18:37:58 BST 2012