metaid_0000016
constant: true
value: 0.8
type: Parameter

metaid_0000002
unit: 886809
name: micromole (default)
type: SBMLUnitsDef

metaid_0000012
constant: true
value: 1.0
type: Parameter

metaid_0000022
constant: true
value: 0.7
type: Parameter

886978
value: 0.1
type: LocalParameter

metaid_0000006
is version of: CHEBI:29108
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: metaid_0000005
type: Species

metaid_0000003
unit: 886821
name: minute (default)
type: SBMLUnitsDef

metaid_0000017
constant: true
value: 5.0
type: Parameter

886882
stoichiometry: 1.0
species: metaid_0000006
type: SpeciesReference

886821
exponent: 1.0
scale: 0
multipler: 60.0
kind: SECOND
type: SBMLUnit

metaid_0000013
constant: true
value: 0.5
type: Parameter

886930
stoichiometry: 1.0
species: metaid_0000007
type: SpeciesReference

metaid_0000027
kinetic law: 886858
product: 886846
reactant: 886833
is version of: GO:0051482
is version of: GO:0006816
fast: false
reversible: false
type: Reaction

metaid_0000007
is version of: CHEBI:29108
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: metaid_0000004
type: Species

metaid_0000031
constant: true
value: 5.0
type: Parameter

metaid_0000004
is version of: GO:0005829
constant: true
size: 1.0
spatial dimensions: 3.0
type: Compartment

metaid_0000021
constant: true
value: 0.5
type: Parameter

metaid_0000014
constant: false
value: 0.0
type: Parameter

886918
value: 0.5
type: LocalParameter

metaid_0000018
constant: false
value: 0.0
type: Parameter

886809
exponent: 1.0
scale: -6
multipler: 1.0
kind: MOLE
type: SBMLUnit

metaid_0000028
kinetic law: 886906
product: 886894
reactant: 886882
is version of: GO:0006816
is version of: GO:0007204
fast: false
reversible: false
type: Reaction

886833
stoichiometry: 1.0
species: metaid_0000006
type: SpeciesReference

886966
value: 2.0
type: LocalParameter

metaid_0000005
is version of: GO:0005790
constant: true
size: 1.0
spatial dimensions: 3.0
type: Compartment

BIOMD0000000047
rule: metaid_0000025
is described by: http://identifiers.org/pubmed/15596518
parameter: metaid_0000011
units def: metaid_0000002
substance units: metaid_0000002
length unit: length
name: Oxhamre2005_Ca_oscillation
type: SBMLModel
compartment: metaid_0000004
is version of: GO:0019722
parameter: metaid_0000015
reaction: metaid_0000029
occurs in: http://identifiers.org/taxonomy/10114
creator:
  ORG:
    orgname: Keck Graduate Institute
  n:
    given: Harish
    family: Dharuri
rule: metaid_0000023
is version of: GO:0048016
parameter: metaid_0000018
units def: metaid_0000003
parameter: metaid_0000012
parameter: metaid_0000022
volume units: metaid_0000323
is: MODEL6623415355
compartment: metaid_0000005
is: rno04020
rule: metaid_0000026
modified:
  W3 CDTF: Thu Jul 05 15:44:53 BST 2012
parameter: metaid_0000016
parameter: metaid_0000020
species: metaid_0000007
species: metaid_0000006
parameter: metaid_0000019
reaction: metaid_0000027
time units: metaid_0000003
parameter: metaid_0000013
curated: true
created:
  W3 CDTF: Thu Aug 25 12:00:43 BST 2005
area units: area
parameter: metaid_0000017
parameter: metaid_0000021
parameter: metaid_0000031
parameter: metaid_0000014
reaction: metaid_0000028
notes: The model should reproduce the figure 1C of the article (successfully reproduced in MathSBML). If your software does not support the variable "time", you can replace the assignmentRule: n = n0 * [ exp(-kbN*time) + kappa * (1 - exp(-kbN*time))] by n = n0 * kappa To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information. In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not. To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.
rule: metaid_0000024

886870
value: 8.0
type: LocalParameter

metaid_0000011
constant: false
value: 1.0
type: Parameter

886942
stoichiometry: 1.0
species: metaid_0000006
type: SpeciesReference

metaid_0000015
constant: true
value: 0.2
type: Parameter

metaid_0000020
constant: false
value: 0.95
type: Parameter

886894
stoichiometry: 1.0
species: metaid_0000007
type: SpeciesReference

metaid_0000019
constant: true
value: 0.7
type: Parameter

metaid_0000029
kinetic law: 886954
product: 886942
reactant: 886930
is version of: GO:0006816
is version of: GO:0051481
fast: false
reversible: false
type: Reaction

886846
stoichiometry: 1.0
species: metaid_0000007
type: SpeciesReference