metaid_0000057
kinetic law: 748870
reactant: 748858
is version of: GO:0006196
fast: false
reversible: false
type: Reaction

metaid_0000059
reactant: 748918
fast: false
has part: R00299
type: Reaction
product: 748942
is homolog to: REACT 1164
has part: http://identifiers.org/ec-code/5.3.1.9
reversible: false
has part: http://identifiers.org/ec-code/2.7.1.2
has part: R00771
reactant: 748906
kinetic law: 748954
product: 748930

metaid_0000010
constant: true
value: 1.0
type: Parameter

748641
stoichiometry: 1.0
species: metaid_0000032
type: SpeciesReference

749099
stoichiometry: 1.0
species: metaid_0000038
type: SpeciesReference

metaid_0000043
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000028
type: Species

metaid_0000018
constant: true
value: 0.2
type: Parameter

metaid_0000024
constant: true
value: 10.0
type: Parameter

metaid_0000003
constant: true
value: 0.5
type: Parameter

748737
stoichiometry: 1.0
species: metaid_0000038
type: SpeciesReference

metaid_0000038
is: C00236
is: CHEBI:16001
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.299109
in compartment: metaid_0000028
type: Species

748809
stoichiometry: 1.0
species: metaid_0000041
type: SpeciesReference

748689
stoichiometry: 1.0
species: metaid_0000034
type: SpeciesReference

749111
stoichiometry: 1.0
species: metaid_0000037
type: SpeciesReference

metaid_0000062
is homolog to: REACT 587
is version of: R01061
reactant: 749087
kinetic law: 749123
fast: false
reversible: false
product: 749111
reactant: 749075
type: Reaction
is version of: http://identifiers.org/ec-code/1.2.1.12
product: 749099

748521
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE
type: SBMLUnit

BIOMD0000000042
parameter: metaid_0000016
parameter: metaid_0000017
units def: metaid_0000069
species: metaid_0000031
parameter: metaid_0000023
parameter: metaid_0000024
parameter: metaid_0000006
parameter: metaid_0000010
parameter: metaid_0000011
reaction: metaid_0000046
reaction: metaid_0000045
species: metaid_0000036
is version of: GO:0006096
area units: area
reaction: metaid_0000052
is homolog to: REACT 1383
reaction: metaid_0000063
reaction: metaid_0000053
reaction: metaid_0000064
type: SBMLModel
species: metaid_0000043
parameter: metaid_0000005
parameter: metaid_0000027
reaction: metaid_0000061
parameter: metaid_0000020
units def: metaid_0000070
parameter: metaid_0000014
parameter: metaid_0000015
parameter: metaid_0000022
time units: metaid_0000070
reaction: metaid_0000056
reaction: metaid_0000067
reaction: metaid_0000057
reaction: metaid_0000068
species: metaid_0000032
species: metaid_0000040
reaction: metaid_0000044
species: metaid_0000034
reaction: metaid_0000050
parameter: metaid_0000009
reaction: metaid_0000051
reaction: metaid_0000062
species: metaid_0000029
species: metaid_0000037
reaction: metaid_0000049
parameter: metaid_0000018
parameter: metaid_0000019
curated: true
parameter: metaid_0000003
parameter: metaid_0000004
parameter: metaid_0000026
reaction: metaid_0000060
length unit: length
occurs in: http://identifiers.org/taxonomy/4932
is described by: http://identifiers.org/pubmed/17029704
notes: This model was automatically converted from model BIOMD0000000042 by using libSBML . According to the BioModels Database terms of use , this generated model is not related with model BIOMD0000000042 any more.
substance units: metaid_0000069
reaction: metaid_0000054
reaction: metaid_0000055
reaction: metaid_0000066
is: sce00010
compartment: metaid_0000028
species: metaid_0000033
species: metaid_0000041
parameter: metaid_0000025
parameter: metaid_0000007
parameter: metaid_0000008
parameter: metaid_0000012
species: metaid_0000035
parameter: metaid_0000013
reaction: metaid_0000047
name: Nielsen1998_Glycolysis
reaction: metaid_0000058
reaction: metaid_0000048
reaction: metaid_0000059
species: metaid_0000038
species: metaid_0000042
reaction: metaid_0000065
is: MODEL6622455387
species: metaid_0000030

metaid_0000058
kinetic law: 748894
reactant: 748882
fast: false
reversible: false
type: Reaction

metaid_0000039
is: CHEBI:18021
is: C00074
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0021125
in compartment: metaid_0000028
type: Species

749051
stoichiometry: 2.0
species: metaid_0000035
type: SpeciesReference

749039
stoichiometry: 1.0
species: metaid_0000034
type: SpeciesReference

749329
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

metaid_0000011
constant: true
value: 50.0
type: Parameter

metaid_0000056
kinetic law: 748846
reactant: 748834
is version of: GO:0006068
fast: false
reversible: false
type: Reaction

749378
stoichiometry: 2.0
species: metaid_0000030
type: SpeciesReference

metaid_0000042
is: C00469
is: CHEBI:16236
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.33981
in compartment: metaid_0000028
type: Species

metaid_0000025
constant: true
value: 10.0
type: Parameter

metaid_0000019
constant: true
value: 0.3
type: Parameter

metaid_0000063
has part: http://identifiers.org/ec-code/4.2.1.11
has part: R00658
reactant: 749147
has part: R01512
has part: http://identifiers.org/ec-code/2.7.2.3
fast: false
kinetic law: 749184
type: Reaction
has part: REACT 1771
reversible: true
product: 749172
product: 749160
reactant: 749135
has part: http://identifiers.org/ec-code/5.4.2.1
has part: REACT 1400
has part: R01518

metaid_0000012
constant: true
value: 10.0
type: Parameter

metaid_0000055
kinetic law: 748822
reactant: 748809
is version of: GO:0046187
fast: false
reversible: false
type: Reaction

metaid_0000045
kinetic law: 748581
product: 748569
is version of: GO:0006172
fast: false
reversible: true
type: Reaction

metaid_0000022
constant: true
value: 1.0
type: Parameter

metaid_0000005
constant: true
value: 0.063
type: Parameter

metaid_0000064
reversible: false
product: 749220
has version: R00200
product: 749232
reactant: 749196
has version: http://identifiers.org/ec-code/2.7.1.40
is homolog to: REACT 1911
reactant: 749208
type: Reaction
kinetic law: 749245
fast: false

749232
stoichiometry: 1.0
species: metaid_0000029
type: SpeciesReference

metaid_0000054
kinetic law: 748797
reactant: 748785
is version of: GO:0042867
fast: false
reversible: false
type: Reaction

metaid_0000013
constant: true
value: 1.0
type: Parameter

749196
stoichiometry: 1.0
species: metaid_0000039
type: SpeciesReference

749366
stoichiometry: 1.0
species: metaid_0000029
type: SpeciesReference

748966
stoichiometry: 1.0
species: metaid_0000033
type: SpeciesReference

749003
stoichiometry: 1.0
species: metaid_0000030
type: SpeciesReference

748991
stoichiometry: 1.0
species: metaid_0000034
type: SpeciesReference

748918
stoichiometry: 1.0
species: metaid_0000029
type: SpeciesReference

749317
stoichiometry: 1.0
species: metaid_0000042
type: SpeciesReference

metaid_0000023
constant: true
value: 1.43E-4
type: Parameter

metaid_0000044
kinetic law: 748557
product: 748545
is version of: GO:0006754
fast: false
reversible: true
type: Reaction

748834
stoichiometry: 1.0
species: metaid_0000042
type: SpeciesReference

749147
stoichiometry: 1.0
species: metaid_0000030
type: SpeciesReference

748785
stoichiometry: 1.0
species: metaid_0000040
type: SpeciesReference

metaid_0000065
kinetic law: 749281
product: 749269
reactant: 749257
is version of: R00224
is version of: http://identifiers.org/ec-code/4.1.1.1
fast: false
reversible: false
type: Reaction

metaid_0000004
constant: true
value: 0.1
type: Parameter

748569
stoichiometry: 1.0
species: metaid_0000030
type: SpeciesReference

748713
stoichiometry: 1.0
species: metaid_0000035
type: SpeciesReference

749269
stoichiometry: 1.0
species: metaid_0000041
type: SpeciesReference

749208
stoichiometry: 1.0
species: metaid_0000030
type: SpeciesReference

749403
stoichiometry: 1.0
species: metaid_0000033
type: SpeciesReference

749220
stoichiometry: 1.0
species: metaid_0000040
type: SpeciesReference

metaid_0000014
constant: true
value: 1.0
type: Parameter

metaid_0000053
kinetic law: 748773
reactant: 748761
fast: false
reversible: false
type: Reaction

748930
stoichiometry: 1.0
species: metaid_0000033
type: SpeciesReference

748978
stoichiometry: 1.0
species: metaid_0000029
type: SpeciesReference

748545
stoichiometry: 1.0
species: metaid_0000029
type: SpeciesReference

metaid_0000007
constant: true
value: 0.0016
type: Parameter

metaid_0000033
is: C05345
is: CHEBI:20935
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.65939
in compartment: metaid_0000028
type: Species

metaid_0000034
is: C05378
is: CHEBI:16905
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.00770135
in compartment: metaid_0000028
type: Species

749075
stoichiometry: 1.0
species: metaid_0000035
type: SpeciesReference

metaid_0000028
is version of: GO:0005737
constant: true
size: 1.0
spatial dimensions: 3.0
type: Compartment

metaid_0000066
reactant: 749305
kinetic law: 749342
product: 749329
reactant: 749293
is version of: R00754
reversible: true
product: 749317
fast: false
type: Reaction
is version of: http://identifiers.org/ec-code/1.1.1.71
is homolog to: REACT 799

metaid_0000048
kinetic law: 748653
product: 748641
is version of: GO:0046323
fast: false
reversible: true
type: Reaction

metaid_0000052
kinetic law: 748749
reactant: 748737
fast: false
reversible: false
type: Reaction

748882
stoichiometry: 1.0
species: metaid_0000043
type: SpeciesReference

749293
stoichiometry: 1.0
species: metaid_0000041
type: SpeciesReference

748617
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

metaid_0000015
constant: true
value: 1.0
type: Parameter

749135
stoichiometry: 1.0
species: metaid_0000038
type: SpeciesReference

metaid_0000035
is: C00118
is: CHEBI:29052
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.00190919
in compartment: metaid_0000028
type: Species

749305
stoichiometry: 1.0
species: metaid_0000037
type: SpeciesReference

metaid_0000032
is: C00293
is: CHEBI:17234
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0112817
in compartment: metaid_0000028
type: Species

748665
stoichiometry: 1.0
species: metaid_0000033
type: SpeciesReference

748906
stoichiometry: 1.0
species: metaid_0000032
type: SpeciesReference

metaid_0000006
constant: true
value: 1.5
type: Parameter

metaid_0000067
fast: false
reactant: 749366
reactant: 749354
kinetic law: 749391
is version of: R00127
reversible: true
type: Reaction
is version of: http://identifiers.org/ec-code/2.7.4.3
product: 749378

metaid_0000029
is: C00002
is: CHEBI:15422
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 4.49064
in compartment: metaid_0000028
type: Species

749160
stoichiometry: 1.0
species: metaid_0000039
type: SpeciesReference

749354
stoichiometry: 1.0
species: metaid_0000031
type: SpeciesReference

metaid_0000049
kinetic law: 748677
reactant: 748665
is version of: GO:0006002
fast: false
reversible: false
type: Reaction

metaid_0000026
constant: true
value: 0.05
type: Parameter

metaid_0000060
is homolog to: REACT 1840
is version of: R00756
reversible: false
modifier: 749015
product: 748991
reactant: 748966
fast: false
reactant: 748978
is version of: http://identifiers.org/ec-code/2.7.1.11
kinetic law: 749027
product: 749003
type: Reaction

metaid_0000051
kinetic law: 748725
reactant: 748713
is version of: GO:0019683
fast: false
reversible: false
type: Reaction

748858
stoichiometry: 1.0
species: metaid_0000031
type: SpeciesReference

749257
stoichiometry: 1.0
species: metaid_0000040
type: SpeciesReference

metaid_0000070
unit: 748533
name: minute
type: SBMLUnitsDef

metaid_0000041
is: C00084
is: CHEBI:15343
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0738334
in compartment: metaid_0000028
type: Species

metaid_0000016
constant: true
value: 0.5
type: Parameter

metaid_0000031
is: C00020
is: CHEBI:16027
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.00261149
in compartment: metaid_0000028
type: Species

metaid_0000009
constant: true
value: 0.01
type: Parameter

metaid_0000036
is: C00003
is: CHEBI:15846
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 3.62057
in compartment: metaid_0000028
type: Species

metaid_0000068
kinetic law: 749427
product: 749415
reactant: 749403
is homolog to: REACT 1571
is version of: GO:0006001
fast: false
reversible: false
type: Reaction

metaid_0000046
kinetic law: 748605
product: 748593
is version of: GO:0006735
fast: false
reversible: true
type: Reaction

748533
exponent: 1.0
scale: 0
multipler: 60.0
kind: SECOND
type: SBMLUnit

748593
stoichiometry: 1.0
species: metaid_0000037
type: SpeciesReference

metaid_0000021
constant: true
value: 0.3
type: Parameter

749087
stoichiometry: 1.0
species: metaid_0000036
type: SpeciesReference

metaid_0000061
has part: R01070
product: 749051
has part: http://identifiers.org/ec-code/4.1.2.13
reactant: 749039
has part: http://identifiers.org/ec-code/5.3.1.1
kinetic law: 749063
type: Reaction
fast: false
is homolog to: REACT 1693
reversible: true
has part: R01015

metaid_0000027
constant: true
value: 0.011
type: Parameter

748761
stoichiometry: 1.0
species: metaid_0000039
type: SpeciesReference

metaid_0000050
kinetic law: 748701
reactant: 748689
is version of: GO:0030388
fast: false
reversible: false
type: Reaction

metaid_0000040
is: CHEBI:15361
is: C00022
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.00422702
in compartment: metaid_0000028
type: Species

749415
stoichiometry: 1.0
species: metaid_0000043
type: SpeciesReference

metaid_0000017
constant: true
value: 10.0
type: Parameter

metaid_0000008
constant: true
value: 0.017
type: Parameter

749172
stoichiometry: 1.0
species: metaid_0000029
type: SpeciesReference

metaid_0000037
is: C00004
is: CHEBI:16908
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.616118
in compartment: metaid_0000028
type: Species

metaid_0000047
kinetic law: 748629
product: 748617
is version of: GO:0009435
fast: false
reversible: true
type: Reaction

748942
stoichiometry: 1.0
species: metaid_0000030
type: SpeciesReference

metaid_0000069
unit: 748521
name: millimole
type: SBMLUnitsDef

metaid_0000020
constant: true
value: 2.0
type: Parameter

metaid_0000030
is: C00008
is: CHEBI:16761
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.108367
in compartment: metaid_0000028
type: Species

orgname: Institute of Theoretical Chemistry, University of Vienna

W3 CDTF: Thu Jun 30 15:08:28 BST 2005

W3 CDTF: Thu Jun 06 12:35:59 BST 2013

ORG:
  orgname: Institute of Theoretical Chemistry, University of Vienna
n:
  given: Lukas
  family: Endler

ORG:
  orgname: EMBL-EBI
n:
  given: Nicolas
  family: Le Novère

n:
  given: Christoph
  family: Flamm