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notes: This a model from the article: Applications of metabolic modelling to plant metabolism. Poolman MG ,Assmus HE, Fell DA J. Exp. Bot. [2004 May; Volume: 55 (Issue: 400 )]: 1177-86 15073223 , Abstract: In this paper some of the general concepts underpinning the computer modelling of metabolic systems are introduced. The difference between kinetic and structural modelling is emphasized, and the more important techniques from both, along with the physiological implications, are described. These approaches are then illustrated by descriptions of other work, in which they have been applied to models of the Calvin cycle, sucrose metabolism in sugar cane, and starch metabolism in potatoes. This model describes the non oxidative Calvin cycle as depicted in Poolman et al; J Exp Bot (2004) 55:1177-1186, fig 2. Reaction E20: E4P + F6P ↔ S7P + GAP, is depicted in the figure, but not included in the model. The light reaction: ADP + P i → ATP, is included in the model, but only mentioned in the figure caption. The parameters and initial concentrations are the same as in Poolman, 1999, Computer Modelling Applied to the Calvin Cycle, PhD Thesis, Oxford Brookes University, Appendix A (available at at http://mudshark.brookes.ac.uk/index.php/Publications/Theses/Mark ) © Mark Poolman (mgpoolman@brookes.ac.uk) 1995-2002 Based on a description by Pettersson 1988, Eur. J. Biochem. 175, 661-672 Differences are: 1 - Reactions assumed by Pettersson to be in equilibrium have fast mass action kinetics. 2 - Introduction of the parameter PGAxpMult to modulate PGA export through TPT. 3 - Introduction of Starch phosphorylase reaction. This file may be freely copied or translated into other formats provided: 1 - This notice is reproduced in its entirety 2 - Published material making use of (information gained from) this model cites at least: (a) Poolman, 1999, Computer Modelling Applied to the Calvin Cycle, PhD Thesis, Oxford Brookes University (b) Poolman, Fell, and Thomas. 2000, Modelling Photosynt…
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kinetic law: 613888
type: Reaction
reversible: false
product: 613840
reactant: 613816
modifier: 613864
product: 613852
fast: false
modifier: 613876

metaid_0000035
reversible: true
type: Reaction
reactant: 613153
reactant: 613141
kinetic law: 613177
is version of: http://identifiers.org/ec-code/4.1.2.13
is: R01829
product: 613165
fast: false

513835
value: 22.0
type: LocalParameter

metaid_0000049
kinetic law: 613804
modifier: 613792
fast: false
reactant: 613732
product: 613768
reversible: false
type: Reaction
product: 613756
is version of: GO:0051407
modifier: 613780
reactant: 613744

613310
stoichiometry: 1.0
species: metaid_0000020
type: SpeciesReference

513913
value: 0.077
type: LocalParameter

513849
value: 13.0
type: LocalParameter

613732
stoichiometry: 1.0
species: metaid_0000021
type: SpeciesReference

513869
value: 0.05
type: LocalParameter

613274
stoichiometry: 1.0
species: metaid_0000016
type: SpeciesReference

513829
value: 0.07
type: LocalParameter

513855
value: 5.0E8
type: LocalParameter