545535
stoichiometry: 1.0
species: 575240
type: SpeciesReference

465503
stoichiometry: 1.0
species: 577371
type: SpeciesReference

578055
notes: FORMULA: C38H70O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)
type: Species

579430
kinetic law: 500785
product: 500772
reactant: 500760
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-carnitine transport via diffusion (extracellular to periplasm)
type: Reaction

579847
fast: false
product: 519278
reactant: 519242
product: 519290
notes: GENE_ASSOCIATION: b0935 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
type: Reaction
name: FMNH2-dependent monooxygenase (ethanesulfonate)
kinetic law: 519314
reactant: 519230
product: 519302
product: 519266
reversible: false
reactant: 519218
product: 519254

590733
units: 456180
value: 0.0
type: LocalParameter

456984
stoichiometry: 7.0E-6
species: 575465
type: SpeciesReference

591395
units: 456180
value: 0.0
type: LocalParameter

590150
units: 456180
value: 1000.0
type: LocalParameter

589549
units: 456180
value: 0.0
type: LocalParameter

536474
stoichiometry: 1.0
species: 576016
type: SpeciesReference

582676
units: 456180
value: 0.0
type: LocalParameter

591396
units: 456180
value: 0.0
type: LocalParameter

511712
stoichiometry: 1.0
species: 574730
type: SpeciesReference

578601
kinetic law: 465032
reactant: 465020
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Pyridoxal exchange
type: Reaction

571438
stoichiometry: 1.0
species: 578021
type: SpeciesReference

614690
stoichiometry: 1.0
species: 578132
type: SpeciesReference

590734
units: 456180
value: 0.0
type: LocalParameter

578603
kinetic law: 465056
reactant: 465044
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Pyridoxine exchange
type: Reaction

567109
stoichiometry: 1.0
species: 575090
type: SpeciesReference

618020
stoichiometry: 1.0
species: 575099
type: SpeciesReference

591394
units: 456180
value: 0.0
type: LocalParameter

586356
units: 456180
value: 1000.0
type: LocalParameter

566843
stoichiometry: 1.0
species: 577233
type: SpeciesReference

582675
units: 456180
value: 0.0
type: LocalParameter

507996
stoichiometry: 1.0
species: 574476
type: SpeciesReference

589547
units: 456180
value: 1000.0
type: LocalParameter

574916
notes: FORMULA: C7H14N2O8P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N1-(5-Phospho-D-ribosyl)glycinamide
type: Species

619326
stoichiometry: 1.0
species: 578154
type: SpeciesReference

480908
stoichiometry: 1.0
species: 574373
type: SpeciesReference

457911
stoichiometry: 0.026166
species: 574550
type: SpeciesReference

520074
stoichiometry: 1.0
species: 577805
type: SpeciesReference

608825
stoichiometry: 1.0
species: 574239
type: SpeciesReference

579845
product: 519194
fast: false
reactant: 519122
type: Reaction
reactant: 519109
product: 519170
reactant: 519134
product: 519146
kinetic law: 519206
notes: GENE_ASSOCIATION: b0935 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
product: 519182
name: FMNH2-dependent monooxygenase (methanesulfonate)
product: 519158
reversible: false

579849
reactant: 519434
type: Reaction
notes: GENE_ASSOCIATION: b0935 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
product: 519518
reactant: 519458
product: 519506
product: 519494
name: FMNH2-dependent monooxygenase (sulfoacetate)
reactant: 519446
product: 519482
reversible: false
product: 519470
kinetic law: 519530
fast: false

578053
stoichiometry: 1.0
species: 578037
type: SpeciesReference

582678
units: 456180
value: 0.0
type: LocalParameter

586357
units: 456180
value: 0.0
type: LocalParameter

590731
units: 456180
value: 1000.0
type: LocalParameter

591398
units: 456180
value: 1000.0
type: LocalParameter

589546
units: 456180
value: -1000.0
type: LocalParameter

512957
stoichiometry: 1.0
species: 576211
type: SpeciesReference

556462
stoichiometry: 1.0
species: 575099
type: SpeciesReference

586580
units: 456180
value: -1000.0
type: LocalParameter

482099
stoichiometry: 1.0
species: 574581
type: SpeciesReference

477472
stoichiometry: 1.0
species: 574211
type: SpeciesReference

466057
stoichiometry: 1.0
species: 577440
type: SpeciesReference

579848
product: 519374
product: 519362
notes: GENE_ASSOCIATION: b0935 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
reactant: 519350
type: Reaction
reactant: 519326
product: 519410
reversible: false
name: FMNH2-dependent monooxygenase (butanesulfonate)
kinetic law: 519422
reactant: 519338
fast: false
product: 519398
product: 519386

578054
notes: FORMULA: C38H74O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerol (dihexadecanoyl, n-C16:0)
type: Species

579431
kinetic law: 500870
reactant: 500797
notes: GENE_ASSOCIATION: b0720 SUBSYSTEM: Citric Acid Cycle EC Number:
reversible: false
product: 500834
product: 500846
name: citrate synthase
fast: false
reactant: 500821
product: 500858
reactant: 500809
type: Reaction

582677
units: 456180
value: 1000.0
type: LocalParameter

586359
units: 456180
value: 0.0
type: LocalParameter

589545
units: 456180
value: 0.0
type: LocalParameter

530384
stoichiometry: 1.0
species: 577890
type: SpeciesReference

572148
stoichiometry: 3.0
species: 575099
type: SpeciesReference

578600
kinetic law: 465008
reactant: 464996
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Pyridoxamine exchange
type: Reaction

586581
units: 456180
value: 1000.0
type: LocalParameter

581279
kinetic law: 601744
product: 601732
reactant: 601720
reactant: 601708
notes: GENE_ASSOCIATION: b2026 SUBSYSTEM: Histidine Metabolism EC Number: 3.5.4.19
fast: false
reversible: false
name: phosphoribosyl-AMP cyclohydrolase
type: Reaction

579434
product: 500990
reversible: false
product: 500978
reactant: 500966
fast: false
kinetic law: 501003
type: Reaction
name: cytosine transport in via proton symport (periplasm)
reactant: 500954
notes: GENE_ASSOCIATION: b0336 SUBSYSTEM: Transport, Inner Membrane EC Number:

564659
stoichiometry: 1.0
species: 577887
type: SpeciesReference

590737
units: 456180
value: 1000.0
type: LocalParameter

591990
units: 456180
value: 0.0
type: LocalParameter

578606
kinetic law: 465105
reactant: 465092
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Quinate exchange
type: Reaction

594670
units: 456180
value: 0.0
type: LocalParameter

505904
stoichiometry: 1.0
species: 574239
type: SpeciesReference

582671
units: 456180
value: 0.0
type: LocalParameter

518470
stoichiometry: 1.0
species: 574603
type: SpeciesReference

612999
stoichiometry: 1.0
species: 576067
type: SpeciesReference

550682
stoichiometry: 1.0
species: 577890
type: SpeciesReference

586582
stoichiometry: 1.0
species: 574373
type: SpeciesReference

579433
type: Reaction
reversible: false
reactant: 500882
name: Cytosine deaminase
notes: GENE_ASSOCIATION: b0337 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.5.4.1
product: 500918
fast: false
kinetic law: 500942
reactant: 500906
reactant: 500894
product: 500930

590738
units: 456180
value: 0.0
type: LocalParameter

547150
stoichiometry: 1.0
species: 577104
type: SpeciesReference

491625
stoichiometry: 1.0
species: 577691
type: SpeciesReference

516388
stoichiometry: 1.0
species: 574478
type: SpeciesReference

578607
kinetic law: 465129
reactant: 465117
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: alpha-D-Ribose 5-phosphate exchange
type: Reaction

618577
stoichiometry: 1.0
species: 575099
type: SpeciesReference

531754
stoichiometry: 1.0
species: 574373
type: SpeciesReference

488238
stoichiometry: 1.0
species: 575950
type: SpeciesReference

502600
stoichiometry: 1.0
species: 574223
type: SpeciesReference

582670
units: 456180
value: 0.0
type: LocalParameter

589543
units: 456180
value: 0.0
type: LocalParameter

591399
units: 456180
value: 0.0
type: LocalParameter

582674
units: 456180
value: 0.0
type: LocalParameter

578057
notes: FORMULA: C42H82O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerol (dioctadecanoyl, n-C18:0)
type: Species

586583
units: 456180
value: 0.0
type: LocalParameter

473768
stoichiometry: 1.0
species: 575090
type: SpeciesReference

578604
kinetic law: 465080
reactant: 465068
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Pyruvate exchange
type: Reaction

590735
units: 456180
value: 0.0
type: LocalParameter

617827
stoichiometry: 1.0
species: 576175
type: SpeciesReference

552554
stoichiometry: 1.0
species: 574874
type: SpeciesReference

574913
notes: FORMULA: C6H13NO8P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Glucosamine 6-phosphate
type: Species

623004
stoichiometry: 1.0
species: 576403
type: SpeciesReference

594672
units: 456180
value: 1000.0
type: LocalParameter

524793
stoichiometry: 1.0
species: 575785
type: SpeciesReference

511038
stoichiometry: 1.0
species: 574709
type: SpeciesReference

589542
units: 456180
value: 1000.0
type: LocalParameter

579290
kinetic law: 493891
product: 493879
notes: GENE_ASSOCIATION: b1216 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
name: calcium (Ca+2) transport out via proton antiport (periplasm)
reactant: 493842
reversible: false
product: 493867
fast: false
reactant: 493855
type: Reaction

474788
stoichiometry: 1.0
species: 574175
type: SpeciesReference

548989
stoichiometry: 1.0
species: 574239
type: SpeciesReference

578058
notes: FORMULA: C42H78O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)
type: Species

582673
units: 456180
value: 1000.0
type: LocalParameter

586584
units: 456180
value: 0.0
type: LocalParameter

579435
kinetic law: 501042
product: 501029
reactant: 501016
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: cytosine transport via diffusion (extracellular to periplasm)
type: Reaction

527520
stoichiometry: 1.0
species: 576948
type: SpeciesReference

591991
units: 456180
value: 0.0
type: LocalParameter

613928
stoichiometry: 1.0
species: 575105
type: SpeciesReference

625059
stoichiometry: 1.0
species: 576466
type: SpeciesReference

594671
units: 456180
value: 0.0
type: LocalParameter

611278
stoichiometry: 1.0
species: 575519
type: SpeciesReference

554161
stoichiometry: 1.0
species: 577887
type: SpeciesReference

582672
units: 456180
value: -10.0
type: LocalParameter

579439
type: Reaction
product: 501283
notes: GENE_ASSOCIATION: b4111 SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 501259
kinetic law: 501295
name: cronobetaine outward transport (H+ antiport)
reactant: 501247
fast: false
product: 501271
reversible: true

589540
units: 456180
value: -1000.0
type: LocalParameter

593693
units: 456180
value: 1000.0
type: LocalParameter

580043
reversible: true
kinetic law: 529803
product: 529779
notes: GENE_ASSOCIATION: b1300 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
reactant: 529731
reactant: 529743
product: 529767
name: gamma-glutamyl-gamma aminobutyric acid dehydrogenase
product: 529791
fast: false
type: Reaction
reactant: 529755

489289
stoichiometry: 1.0
species: 574476
type: SpeciesReference

580044
name: gamma-glutamyl-gamma-aminobutyric acid hydrolase
reactant: 529827
product: 529839
type: Reaction
reactant: 529815
reversible: false
kinetic law: 529863
fast: false
product: 529851
notes: GENE_ASSOCIATION: b1298 SUBSYSTEM: Alternate Carbon Metabolism EC Number:

583321
units: 456180
value: 0.0
type: LocalParameter

580664
product: 559081
product: 559057
reversible: false
product: 559045
type: Reaction
product: 559069
notes: GENE_ASSOCIATION: (b0198 and b0199 and b0197) SUBSYSTEM: Transport, Inner Membrane EC Number:
name: L-methionine transport via ABC system (periplasm)
reactant: 559009
reactant: 559021
kinetic law: 559093
fast: false
reactant: 559033

586029
units: 456180
value: 0.0
type: LocalParameter

593006
units: 456180
value: 0.0
type: LocalParameter

579438
reactant: 501159
reactant: 501146
name: crotonobetaine transport via ABC system (periplasm)
product: 501211
fast: false
product: 501185
reversible: false
kinetic law: 501235
type: Reaction
reactant: 501172
notes: GENE_ASSOCIATION: (b2677 and b2678 and b2679) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 501198
product: 501223

588908
units: 456180
value: 0.0
type: LocalParameter

587952
units: 456180
value: 1000.0
type: LocalParameter

536279
stoichiometry: 1.0
species: 574871
type: SpeciesReference

543336
stoichiometry: 1.0
species: 573892
type: SpeciesReference

583323
units: 456180
value: 1000.0
type: LocalParameter

565686
stoichiometry: 1.0
species: 575785
type: SpeciesReference

593695
units: 456180
value: 0.0
type: LocalParameter

579437
product: 501107
product: 501094
reversible: false
name: Crotonobetaine-CoA Ligase
product: 501120
kinetic law: 501133
reactant: 501055
reactant: 501068
notes: GENE_ASSOCIATION: b0037 SUBSYSTEM: Oxidative Phosphorylation EC Number:
reactant: 501081
fast: false
type: Reaction

581967
units: 456180
value: 0.0
type: LocalParameter

506862
stoichiometry: 1.0
species: 574595
type: SpeciesReference

538233
stoichiometry: 1.0
species: 576457
type: SpeciesReference

593007
units: 456180
value: 0.0
type: LocalParameter

588909
units: 456180
value: 1000.0
type: LocalParameter

587951
units: 456180
value: 0.0
type: LocalParameter

546771
stoichiometry: 1.0
species: 575785
type: SpeciesReference

512415
stoichiometry: 1.0
species: 575090
type: SpeciesReference

580041
kinetic law: 529719
reactant: 529682
notes: GENE_ASSOCIATION: b3729 SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 2.6.1.16
product: 529707
name: glutamine-fructose-6-phosphate transaminase
product: 529694
fast: false
reactant: 529670
reversible: false
type: Reaction

573758
notes: FORMULA: C20H21N7O7 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 10-Formyltetrahydrofolate
type: Species

506170
stoichiometry: 1.0
species: 574573
type: SpeciesReference

521955
stoichiometry: 1.0
species: 576891
type: SpeciesReference

593696
units: 456180
value: 0.0
type: LocalParameter

578608
stoichiometry: 1.0
species: 575099
type: SpeciesReference

587950
units: 456180
value: 0.0
type: LocalParameter

507383
stoichiometry: 1.0
species: 573808
type: SpeciesReference

581968
units: 456180
value: 0.0
type: LocalParameter

458351
stoichiometry: 2.23E-4
species: 576169
type: SpeciesReference

575366
notes: FORMULA: C12H22O11 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Maltose
type: Species

490028
stoichiometry: 1.0
species: 574353
type: SpeciesReference

580040
kinetic law: 529658
product: 529646
reactant: 529634
notes: GENE_ASSOCIATION: (b1377 or b2215 or b0929 or b0241) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: GDP transport via diffusion (extracellular to periplasm)
type: Reaction

601154
stoichiometry: 1.0
species: 575836
type: SpeciesReference

574910
notes: FORMULA: C6H13NO8P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Glucosamine 1-phosphate
type: Species

479917
stoichiometry: 2.0
species: 574239
type: SpeciesReference

580665
kinetic law: 559129
product: 559117
reactant: 559105
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-methionine transport via diffusion (extracellular to periplasm)
type: Reaction

583320
units: 456180
value: 0.0
type: LocalParameter

578609
kinetic law: 465153
reactant: 465141
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: rifampin exchange
type: Reaction

551263
stoichiometry: 1.0
species: 577554
type: SpeciesReference

593697
units: 456180
value: 0.0
type: LocalParameter

588907
units: 456180
value: 0.0
type: LocalParameter

581969
units: 456180
value: 1000.0
type: LocalParameter

599801
stoichiometry: 1.0
species: 575099
type: SpeciesReference

573756
stoichiometry: 1.0
species: 575645
type: SpeciesReference

609675
stoichiometry: 1.0
species: 575920
type: SpeciesReference

564877
stoichiometry: 1.0
species: 574435
type: SpeciesReference

588904
units: 456180
value: 1000.0
type: LocalParameter

503480
stoichiometry: 1.0
species: 574538
type: SpeciesReference

556909
stoichiometry: 1.0
species: 577664
type: SpeciesReference

499516
stoichiometry: 1.0
species: 576721
type: SpeciesReference

581962
units: 456180
value: 0.0
type: LocalParameter

578051
notes: FORMULA: C34H66O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerol (ditetradecanoyl, n-C14:0)
type: Species

575360
notes: FORMULA: C24H33N7O19P3S CHARGE: -5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Malonyl-CoA
type: Species

470052
stoichiometry: 1.0
species: 573993
type: SpeciesReference

573755
constant: true
size: NaN
spatial dimensions: 3.0
name: Periplasm
type: Compartment

615787
stoichiometry: 1.0
species: 574373
type: SpeciesReference

484856
stoichiometry: 1.0
species: 574281
type: SpeciesReference

587956
units: 456180
value: 0.0
type: LocalParameter

590730
units: 456180
value: 0.0
type: LocalParameter

582679
units: 456180
value: 0.0
type: LocalParameter

472104
stoichiometry: 1.0
species: 574042
type: SpeciesReference

488443
stoichiometry: 1.0
species: 575947
type: SpeciesReference

580437
reactant: 548228
product: 548252
type: Reaction
fast: false
kinetic law: 548264
product: 548240
name: lacaldehyde reductase (S-propane-1,2-diol forming)
reversible: true
notes: GENE_ASSOCIATION: b2799 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 1.1.1.77
reactant: 548216
reactant: 548204

588905
units: 456180
value: 0.0
type: LocalParameter

578052
notes: FORMULA: C34H62O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerol (ditetradec-7-enoyl, n-C14:1)
type: Species

610641
stoichiometry: 1.0
species: 574187
type: SpeciesReference

593699
units: 456180
value: 1000.0
type: LocalParameter

492362
stoichiometry: 1.0
species: 574373
type: SpeciesReference

601864
stoichiometry: 1.0
species: 575848
type: SpeciesReference

575363
notes: FORMULA: C25H36N7O19P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: malonyl-CoA methyl ester
type: Species

623436
stoichiometry: 1.0
species: 576424
type: SpeciesReference

481125
stoichiometry: 2.0
species: 575090
type: SpeciesReference

587955
units: 456180
value: 0.0
type: LocalParameter

569155
stoichiometry: 1.0
species: 575090
type: SpeciesReference

526150
stoichiometry: 1.0
species: 577829
type: SpeciesReference

530987
stoichiometry: 1.0
species: 576382
type: SpeciesReference

593008
units: 456180
value: 1000.0
type: LocalParameter

545946
stoichiometry: 1.0
species: 574024
type: SpeciesReference

581964
units: 456180
value: 1000.0
type: LocalParameter

588902
units: 456180
value: 0.0
type: LocalParameter

496990
stoichiometry: 1.0
species: 577887
type: SpeciesReference

563909
stoichiometry: 1.0
species: 575099
type: SpeciesReference

580662
product: 558961
product: 558985
type: Reaction
reactant: 558925
product: 558973
reactant: 558949
kinetic law: 558997
fast: false
name: Methionyl-tRNA synthetase
notes: GENE_ASSOCIATION: b2114 SUBSYSTEM: tRNA Charging EC Number: 6.1.1.10
reversible: false
reactant: 558937

573753
constant: true
size: NaN
spatial dimensions: 3.0
name: Extracellular
type: Compartment

495311
stoichiometry: 1.0
species: 574474
type: SpeciesReference

575362
stoichiometry: 1.0
species: 577890
type: SpeciesReference

540170
stoichiometry: 1.0
species: 575135
type: SpeciesReference

477965
stoichiometry: 1.0
species: 574766
type: SpeciesReference

587954
units: 456180
value: 0.0
type: LocalParameter

580439
product: 548300
type: Reaction
fast: false
notes: GENE_ASSOCIATION: (b2170 or b0070 or b1528) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 548312
reactant: 548276
reactant: 548288
name: Lactose transport via proton aniport (periplasm)
reversible: false
kinetic law: 548324

487078
stoichiometry: 1.0
species: 573786
type: SpeciesReference

459719
stoichiometry: 1.0
species: 576622
type: SpeciesReference

581965
units: 456180
value: 0.0
type: LocalParameter

586790
units: 456180
value: 1000.0
type: LocalParameter

580661
reactant: 558865
type: Reaction
kinetic law: 558913
reactant: 558853
name: L-methionine-R-sulfoxide reductase
product: 558877
product: 558901
reversible: false
fast: false
notes: GENE_ASSOCIATION: ((b1778 and b2582) or (b1778 and b3781)) SUBSYSTEM: Methionine Metabolism EC Number:
product: 558889

538005
stoichiometry: 2.0
species: 575090
type: SpeciesReference

588901
units: 456180
value: 0.0
type: LocalParameter

573750
constant: true
size: NaN
spatial dimensions: 3.0
name: Cytoplasm
type: Compartment

581971
units: 456180
value: 0.0
type: LocalParameter

580445
notes: GENE_ASSOCIATION: (b3770 or b4054) SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism EC Number: 2.6.1.42
reactant: 548564
name: leucine transaminase (irreversible)
type: Reaction
product: 548589
kinetic law: 548613
reactant: 548576
reversible: false
product: 548601
fast: false

591989
units: 456180
value: 0.0
type: LocalParameter

579287
reactant: 493695
type: Reaction
product: 493743
name: tungsten bispterin guanine dinucleotide synthase
notes: GENE_ASSOCIATION: (b3857 or (b3857 and b3856)) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 493731
reactant: 493707
kinetic law: 493756
fast: false
reversible: false
reactant: 493719

605741
stoichiometry: 1.0
species: 575558
type: SpeciesReference

580659
type: Reaction
notes: GENE_ASSOCIATION: ((b4219 and b2582) or (b4219 and b3781) or (b3551 and b2582) or (b3551 and b3781)) SUBSYSTEM: Methionine Metabolism EC Number: 1.8.4.5
product: 558805
product: 558829
kinetic law: 558841
reactant: 558793
product: 558817
reversible: false
fast: false
reactant: 558781
name: L-methionine-S-oxide reductase

594241
units: 456180
value: 0.0
type: LocalParameter

587734
units: 456180
value: 1000.0
type: LocalParameter

577083
notes: FORMULA: C6H11O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Idonate
type: Species

470639
stoichiometry: 1.0
species: 574606
type: SpeciesReference

496266
stoichiometry: 1.0
species: 574456
type: SpeciesReference

586033
units: 456180
value: 0.0
type: LocalParameter

478759
stoichiometry: 1.0
species: 576304
type: SpeciesReference

588900
units: 456180
value: 0.0
type: LocalParameter

581970
units: 456180
value: 0.0
type: LocalParameter

580446
reactant: 548650
product: 548675
product: 548687
reactant: 548625
name: Leucyl-tRNA synthetase
type: Reaction
reversible: false
kinetic law: 548699
fast: false
reactant: 548638
product: 548662
notes: GENE_ASSOCIATION: b0642 SUBSYSTEM: tRNA Charging EC Number: 6.1.1.4

590309
units: 456180
value: 0.0
type: LocalParameter

596442
units: 456180
value: 1000.0
type: LocalParameter

575147
notes: FORMULA: C124H220N2O51P2 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: heptosyl-heptosyl-kdo2-lipidA
type: Species

587735
units: 456180
value: 0.0
type: LocalParameter

594242
units: 456180
value: 0.0
type: LocalParameter

586782
units: 456180
value: 0.0
type: LocalParameter

580049
reactant: 530142
reactant: 530130
fast: false
type: Reaction
kinetic law: 530190
notes: GENE_ASSOCIATION: b2551 SUBSYSTEM: Glycine and Serine Metabolism EC Number: 2.1.2.1
product: 530154
name: glycine hydroxymethyltransferase, reversible
product: 530178
reversible: true
product: 530166

465816
stoichiometry: 1.0
species: 577410
type: SpeciesReference

581973
units: 456180
value: 1000.0
type: LocalParameter

579289
product: 493817
name: tungsten bispterin cofactor synthase
fast: false
reactant: 493768
product: 493805
reversible: false
reactant: 493780
kinetic law: 493829
notes: GENE_ASSOCIATION: b0827 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 493792
type: Reaction

587731
units: 456180
value: 0.0
type: LocalParameter

590308
units: 456180
value: 1000.0
type: LocalParameter

523815
stoichiometry: 1.0
species: 577887
type: SpeciesReference

593290
units: 456180
value: 1000.0
type: LocalParameter

490949
stoichiometry: 1.0
species: 575090
type: SpeciesReference

594243
units: 456180
value: 1000.0
type: LocalParameter

587958
units: 456180
value: 1000.0
type: LocalParameter

586035
units: 456180
value: -1000.0
type: LocalParameter

573539
stoichiometry: 1.0
species: 573806
type: SpeciesReference

551046
stoichiometry: 1.0
species: 577545
type: SpeciesReference

586781
units: 456180
value: 0.0
type: LocalParameter

519845
stoichiometry: 1.0
species: 575099
type: SpeciesReference

581972
units: 456180
value: 0.0
type: LocalParameter

587732
units: 456180
value: 0.0
type: LocalParameter

594245
units: 456180
value: 0.0
type: LocalParameter

596440
units: 456180
value: -1000.0
type: LocalParameter

580448
product: 548771
name: L-leucine transport via ABC system (periplasm)
kinetic law: 548795
fast: false
reversible: false
product: 548747
type: Reaction
reactant: 548723
reactant: 548711
notes: GENE_ASSOCIATION: ((b3454 and b3455 and b3457 and b3460 and b3456) or (b3454 and b3455 and b3457 and b3458 and b3456)) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 548735
product: 548759
product: 548783

594244
stoichiometry: 1.0
species: 577275
type: SpeciesReference

521056
stoichiometry: 2.0
species: 575090
type: SpeciesReference

587959
units: 456180
value: 0.0
type: LocalParameter

583328
units: 456180
value: 1000.0
type: LocalParameter

500555
stoichiometry: 1.0
species: 575785
type: SpeciesReference

586034
units: 456180
value: 0.0
type: LocalParameter

614100
stoichiometry: 1.0
species: 574287
type: SpeciesReference

593003
units: 456180
value: 0.0
type: LocalParameter

487298
stoichiometry: 1.0
species: 573790
type: SpeciesReference

582817
units: 456180
value: 0.0
type: LocalParameter

594246
units: 456180
value: 0.0
type: LocalParameter

586784
units: 456180
value: 1000.0
type: LocalParameter

580655
fast: false
product: 558564
reactant: 558515
type: Reaction
product: 558588
reactant: 558527
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
kinetic law: 558600
reactant: 558540
name: L-methionine S-oxide transport via ABC system (periplasm)
product: 558552
product: 558576
reversible: false

580047
reversible: false
type: Reaction
kinetic law: 530046
product: 530034
name: gamma glutamyl putrescine synthase
product: 530022
reactant: 529973
fast: false
product: 529997
reactant: 529961
notes: GENE_ASSOCIATION: b1297 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
product: 530010
reactant: 529985

483742
stoichiometry: 1.0
species: 574269
type: SpeciesReference

586037
units: 456180
value: 1000.0
type: LocalParameter

583327
units: 456180
value: 0.0
type: LocalParameter

587738
units: 456180
value: -1000.0
type: LocalParameter

593002
units: 456180
value: 1000.0
type: LocalParameter

502828
stoichiometry: 1.0
species: 576241
type: SpeciesReference

488660
stoichiometry: 1.0
species: 577682
type: SpeciesReference

594247
units: 456180
value: 0.0
type: LocalParameter

582818
units: 456180
value: 0.0
type: LocalParameter

531305
stoichiometry: 1.0
species: 574970
type: SpeciesReference

580656
kinetic law: 558637
product: 558625
reactant: 558612
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-methionine S-oxide diffusion (extracellular)
type: Reaction

586783
units: 456180
value: -1000.0
type: LocalParameter

603906
stoichiometry: 1.0
species: 575890
type: SpeciesReference

580048
kinetic law: 530118
type: Reaction
reactant: 530058
name: gamma-hydroxybutyrate dehydrogenase (NADH)
product: 530094
reactant: 530070
fast: false
reversible: true
notes: GENE_ASSOCIATION: b3882 SUBSYSTEM: Arginine and Proline Metabolism EC Number:
product: 530106
reactant: 530082

580442
reactant: 548372
fast: false
reactant: 548384
name: Lactose transport via proton symport (periplasm)
type: Reaction
notes: GENE_ASSOCIATION: b0343 SUBSYSTEM: Transport, Inner Membrane EC Number:
kinetic law: 548420
reversible: true
product: 548396
product: 548408

593295
units: 456180
value: 0.0
type: LocalParameter

583326
units: 456180
value: 0.0
type: LocalParameter

532446
stoichiometry: 1.0
species: 574991
type: SpeciesReference

479701
stoichiometry: 1.0
species: 574991
type: SpeciesReference

544584
stoichiometry: 1.0
species: 575099
type: SpeciesReference

587739
units: 456180
value: 1000.0
type: LocalParameter

577080
notes: FORMULA: C5H4N4O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Hypoxanthine
type: Species

575357
notes: FORMULA: C14H22N2O10PRS CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Malonyl-[acyl-carrier protein]
type: Species

580657
type: Reaction
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 558697
name: L-methionine R-oxide transport via ABC system (periplasm)
product: 558685
reactant: 558673
product: 558709
kinetic law: 558733
reversible: false
fast: false
reactant: 558649
product: 558721
reactant: 558661

582819
units: 456180
value: 1000.0
type: LocalParameter

505493
stoichiometry: 1.0
species: 575824
type: SpeciesReference

559733
stoichiometry: 1.0
species: 577976
type: SpeciesReference

580443
name: D-lactate dehydrogenase
product: 548456
type: Reaction
fast: false
kinetic law: 548492
reversible: true
product: 548480
product: 548468
notes: GENE_ASSOCIATION: (b2133 or b1380) SUBSYSTEM: Pyruvate Metabolism EC Number: 1.1.1.28
reactant: 548444
reactant: 548432

586786
units: 456180
value: 0.0
type: LocalParameter

488866
stoichiometry: 1.0
species: 574341
type: SpeciesReference

568341
stoichiometry: 1.0
species: 575785
type: SpeciesReference

586787
units: 456180
value: 0.0
type: LocalParameter

593692
units: 456180
value: 0.0
type: LocalParameter

593294
units: 456180
value: 0.0
type: LocalParameter

575144
notes: FORMULA: C17H29N2O11PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Hydroxyglutaryl-[acyl-carrier protein] methyl ester
type: Species

580658
kinetic law: 558769
product: 558757
reactant: 558745
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-methionine R-oxide diffusion (extracellular)
type: Reaction

594249
units: 456180
value: 1000.0
type: LocalParameter

580046
product: 529924
product: 529911
reactant: 529899
product: 529936
type: Reaction
fast: false
reactant: 529887
kinetic law: 529949
notes: GENE_ASSOCIATION: b1301 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
reversible: false
reactant: 529875
name: gamma glutamyl putrescine oxidase

463049
stoichiometry: 1.0
species: 577068
type: SpeciesReference

580444
notes: GENE_ASSOCIATION: b2133 SUBSYSTEM: Oxidative Phosphorylation EC Number: 1.1.2.4
reactant: 548516
type: Reaction
name: D-lactate dehydrogenase
reversible: false
product: 548528
fast: false
reactant: 548504
product: 548540
kinetic law: 548552

503264
stoichiometry: 1.0
species: 575926
type: SpeciesReference

586038
units: 456180
value: 0.0
type: LocalParameter

593293
units: 456180
value: 0.0
type: LocalParameter

593691
units: 456180
value: 0.0
type: LocalParameter

583324
units: 456180
value: 0.0
type: LocalParameter

553930
stoichiometry: 1.0
species: 576262
type: SpeciesReference

613700
stoichiometry: 1.0
species: 578126
type: SpeciesReference

587737
units: 456180
value: 0.0
type: LocalParameter

602978
stoichiometry: 1.0
species: 575090
type: SpeciesReference

581275
type: Reaction
reactant: 601492
reactant: 601504
product: 601528
product: 601540
notes: GENE_ASSOCIATION: b4005 SUBSYSTEM: Purine and Pyrimidine Biosynthesis EC Number: 6.3.4.13
product: 601552
reversible: true
fast: false
reactant: 601516
product: 601564
name: phosphoribosylglycinamide synthase
kinetic law: 601576

586789
stoichiometry: 1.0
species: 578061
type: SpeciesReference

590302
units: 456180
value: 1000.0
type: LocalParameter

464429
stoichiometry: 1.0
species: 577239
type: SpeciesReference

594674
units: 456180
value: 0.0
type: LocalParameter

591981
stoichiometry: 1.0
species: 575740
type: SpeciesReference

595496
units: 456180
value: 0.0
type: LocalParameter

586360
units: 456180
value: -1000.0
type: LocalParameter

586574
units: 456180
value: 0.0
type: LocalParameter

581276
notes: GENE_ASSOCIATION: b2499 SUBSYSTEM: Purine and Pyrimidine Biosynthesis EC Number: 6.3.3.1
product: 601612
reactant: 601600
fast: false
product: 601636
type: Reaction
name: phosphoribosylaminoimidazole synthase
kinetic law: 601660
product: 601624
product: 601648
reversible: false
reactant: 601588

510399
stoichiometry: 1.0
species: 575090
type: SpeciesReference

581274
kinetic law: 601480
product: 601468
reactant: 601456
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: Phosphonate transport via diffusion (extracellular to periplasm)
type: Reaction

501500
stoichiometry: 2.0
species: 575090
type: SpeciesReference

516171
stoichiometry: 1.0
species: 574155
type: SpeciesReference

500121
stoichiometry: 1.0
species: 574509
type: SpeciesReference

619545
stoichiometry: 1.0
species: 577626
type: SpeciesReference

572367
stoichiometry: 2.0
species: 574373
type: SpeciesReference

586788
units: 456180
value: -1000.0
type: LocalParameter

591982
units: 456180
value: 1000.0
type: LocalParameter

594675
units: 456180
value: 0.0
type: LocalParameter

590301
units: 456180
value: 0.0
type: LocalParameter

531936
stoichiometry: 1.0
species: 576993
type: SpeciesReference

582814
units: 456180
value: 1000.0
type: LocalParameter

495761
stoichiometry: 2.0
species: 575525
type: SpeciesReference

586573
units: 456180
value: 0.0
type: LocalParameter

536692
stoichiometry: 1.0
species: 577887
type: SpeciesReference

526370
stoichiometry: 1.0
species: 573884
type: SpeciesReference

579851
kinetic law: 519626
fast: false
product: 519614
reactant: 519542
product: 519602
product: 519590
reversible: false
notes: GENE_ASSOCIATION: b3409 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
type: Reaction
reactant: 519554
product: 519578
name: iron (II) transport via ABC system (periplasm)
reactant: 519566

577089
notes: FORMULA: C10H11N4O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: IMP
type: Species

593298
units: 456180
value: 1000.0
type: LocalParameter

595499
units: 456180
value: 0.0
type: LocalParameter

520619
stoichiometry: 1.0
species: 574239
type: SpeciesReference

591983
units: 456180
value: 0.0
type: LocalParameter

594676
units: 456180
value: 0.0
type: LocalParameter

590300
units: 456180
value: 0.0
type: LocalParameter

550232
stoichiometry: 1.0
species: 577566
type: SpeciesReference

593299
units: 456180
value: 0.0
type: LocalParameter

579281
product: 493464
product: 493452
reactant: 493392
name: butanesulfonate transport via ABC system (periplasm)
type: Reaction
notes: GENE_ASSOCIATION: ((b0936 and b0933 and b0934) or (b0365 and b0366 and b0367)) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 493428
kinetic law: 493476
fast: false
reactant: 493416
product: 493440
reversible: false
reactant: 493404

582815
units: 456180
value: 0.0
type: LocalParameter

513905
stoichiometry: 1.0
species: 578174
type: SpeciesReference

469422
stoichiometry: 1.0
species: 573880
type: SpeciesReference

586576
units: 456180
value: 1000.0
type: LocalParameter

575141
notes: FORMULA: Hg CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hg2+
type: Species

606165
stoichiometry: 1.0
species: 575522
type: SpeciesReference

566627
stoichiometry: 1.0
species: 578004
type: SpeciesReference

596449
units: 456180
value: 0.0
type: LocalParameter

579852
reactant: 519651
name: iron (II) transport in via proton symport (periplasm)
notes: GENE_ASSOCIATION: b2392 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
type: Reaction
kinetic law: 519687
fast: false
product: 519663
product: 519675
reversible: false
reactant: 519639

593297
stoichiometry: 1.0
species: 575761
type: SpeciesReference

473072
stoichiometry: 1.0
species: 575099
type: SpeciesReference

595497
units: 456180
value: 0.0
type: LocalParameter

580440
kinetic law: 548360
product: 548348
reactant: 548336
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: Lactose transport via diffusion (extracellular to periplasm)
type: Reaction

581277
kinetic law: 601696
product: 601684
reactant: 601672
notes: GENE_ASSOCIATION: b1262 SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism EC Number: 5.3.1.24
fast: false
reversible: false
name: phosphoribosylanthranilate isomerase (irreversible)
type: Reaction

484118
stoichiometry: 1.0
species: 575090
type: SpeciesReference

579282
kinetic law: 493513
product: 493500
reactant: 493488
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: butanesulfonate transport via diffusion (extracellular to periplasm)
type: Reaction

586361
units: 456180
value: 1000.0
type: LocalParameter

554381
stoichiometry: 1.0
species: 575453
type: SpeciesReference

579853
kinetic law: 519748
reactant: 519711
name: iron (Fe+2) transport out via proton antiport (periplasm)
product: 519723
fast: false
type: Reaction
notes: GENE_ASSOCIATION: b3915 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
reversible: false
reactant: 519699
product: 519735

578610
kinetic law: 465177
reactant: 465165
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-Ribose exchange
type: Reaction

553701
stoichiometry: 1.0
species: 573858
type: SpeciesReference

596446
units: 456180
value: -1000.0
type: LocalParameter

586579
units: 456180
value: 0.0
type: LocalParameter

519000
stoichiometry: 1.0
species: 574826
type: SpeciesReference

581271
product: 601347
reactant: 601323
notes: GENE_ASSOCIATION: b1702 SUBSYSTEM: Glycolysis/Gluconeogenesis EC Number: 2.7.9.2
product: 601335
reactant: 601299
type: Reaction
fast: false
name: phosphoenolpyruvate synthase
product: 601359
reactant: 601311
kinetic law: 601383
product: 601371
reversible: false

499999
stoichiometry: 1.0
species: 574502
type: SpeciesReference

586364
units: 456180
value: 0.0
type: LocalParameter

591390
units: 456180
value: 0.0
type: LocalParameter

579283
reactant: 493537
product: 493550
type: Reaction
reactant: 493525
fast: false
kinetic law: 493574
product: 493562
reversible: true
notes: GENE_ASSOCIATION: b2223 SUBSYSTEM: Transport, Inner Membrane EC Number:
name: Butyrate transport via proton symport, reversible (periplasm)

590306
units: 456180
value: 0.0
type: LocalParameter

552771
stoichiometry: 1.0
species: 575099
type: SpeciesReference

491407
stoichiometry: 1.0
species: 574991
type: SpeciesReference

594678
units: 456180
value: 1000.0
type: LocalParameter

591985
units: 456180
value: 0.0
type: LocalParameter

595492
units: 456180
value: 0.0
type: LocalParameter

623899
stoichiometry: 1.0
species: 574991
type: SpeciesReference

500073
stoichiometry: 1.0
species: 574506
type: SpeciesReference

488019
stoichiometry: 1.0
species: 575588
type: SpeciesReference

515649
stoichiometry: 1.0
species: 574844
type: SpeciesReference

565057
stoichiometry: 1.0
species: 574715
type: SpeciesReference

596447
units: 456180
value: 1000.0
type: LocalParameter

581270
kinetic law: 601287
product: 601275
reactant: 601263
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: 3-phenylpropionate transport via diffusion (extracellular to periplasm)
type: Reaction

525192
stoichiometry: 1.0
species: 576918
type: SpeciesReference

574907
notes: FORMULA: C6H9O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Galacturonate
type: Species

586577
units: 456180
value: 0.0
type: LocalParameter

586363
units: 456180
value: 0.0
type: LocalParameter

591391
units: 456180
value: 0.0
type: LocalParameter

587730
units: 456180
value: 0.0
type: LocalParameter

590305
units: 456180
value: 0.0
type: LocalParameter

508914
stoichiometry: 1.0
species: 573868
type: SpeciesReference

461648
stoichiometry: 1.0
species: 576894
type: SpeciesReference

591986
units: 456180
value: 0.0
type: LocalParameter

594679
units: 456180
value: 0.0
type: LocalParameter

582810
units: 456180
value: 0.0
type: LocalParameter

557416
stoichiometry: 1.0
species: 575564
type: SpeciesReference

508333
stoichiometry: 1.0
species: 575483
type: SpeciesReference

586031
units: 456180
value: 1000.0
type: LocalParameter

468828
stoichiometry: 1.0
species: 573846
type: SpeciesReference

579855
kinetic law: 519785
product: 519772
reactant: 519760
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: iron (II) transport via diffusion (extracellular to periplasm)
type: Reaction

478543
stoichiometry: 1.0
species: 575099
type: SpeciesReference

481476
stoichiometry: 1.0
species: 575099
type: SpeciesReference

482799
stoichiometry: 1.0
species: 575108
type: SpeciesReference

609224
stoichiometry: 1.0
species: 574092
type: SpeciesReference

577085
stoichiometry: 1.0
species: 575519
type: SpeciesReference

581273
reactant: 601395
type: Reaction
name: Phosphonate hydrogenase (periplasm)
notes: GENE_ASSOCIATION: b0383 SUBSYSTEM: Unassigned EC Number:
kinetic law: 601444
reversible: false
product: 601420
fast: false
reactant: 601408
product: 601432

522441
stoichiometry: 1.0
species: 575090
type: SpeciesReference

579285
kinetic law: 493610
product: 493598
reactant: 493586
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: Butyrate transport via diffusion (extracellular to periplasm)
type: Reaction

596443
units: 456180
value: 0.0
type: LocalParameter

590304
units: 456180
value: 0.0
type: LocalParameter

591392
units: 456180
value: 1000.0
type: LocalParameter

591987
units: 456180
value: 1000.0
type: LocalParameter

589538
units: 456180
value: 0.0
type: LocalParameter

595494
units: 456180
value: 0.0
type: LocalParameter

582811
units: 456180
value: 0.0
type: LocalParameter

457522
stoichiometry: 0.005448
species: 577977
type: SpeciesReference

611059
stoichiometry: 1.0
species: 575510
type: SpeciesReference

579856
kinetic law: 519821
product: 519809
reactant: 519797
notes: GENE_ASSOCIATION: b3040 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
reversible: false
name: iron (+2) transport in via permease (no H+)
type: Reaction

586030
units: 456180
value: 0.0
type: LocalParameter

577086
notes: FORMULA: C6H13NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Isoleucine
type: Species

596445
units: 456180
value: 0.0
type: LocalParameter

586365
units: 456180
value: 0.0
type: LocalParameter

579286
reactant: 493622
reactant: 493634
type: Reaction
notes: GENE_ASSOCIATION: (b3857 or (b3857 and b3856)) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
reversible: false
fast: false
kinetic law: 493683
product: 493670
reactant: 493646
product: 493658
name: tungsten bispterin guanine dinucleotide synthase (single GDP)

589539
units: 456180
value: 0.0
type: LocalParameter

623670
stoichiometry: 1.0
species: 576433
type: SpeciesReference

474569
stoichiometry: 1.0
species: 574295
type: SpeciesReference

579857
product: 519918
reactant: 519833
reactant: 519845
product: 519882
product: 519906
name: iron transport from ferric-dicitrate via ABC system (periplasm)
fast: false
product: 519869
kinetic law: 519930
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: (b4290 and b4289 and b4288 and b4287) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
product: 519894
reactant: 519857

595493
units: 456180
value: 0.0
type: LocalParameter

582812
units: 456180
value: 0.0
type: LocalParameter

622834
stoichiometry: 1.0
species: 575090
type: SpeciesReference

586345
units: 456180
value: 1000.0
type: LocalParameter

579837
fast: false
notes: GENE_ASSOCIATION: b2803 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 2.7.1.51
name: L-fuculokinase
kinetic law: 518711
product: 518699
reactant: 518663
reversible: false
product: 518687
reactant: 518651
type: Reaction
product: 518675

578041
stoichiometry: 1.0
species: 575785
type: SpeciesReference

599195
stoichiometry: 1.0
species: 574122
type: SpeciesReference

614822
stoichiometry: 1.0
species: 574187
type: SpeciesReference

613447
stoichiometry: 1.0
species: 576070
type: SpeciesReference

489907
stoichiometry: 1.0
species: 575090
type: SpeciesReference

597525
stoichiometry: 1.0
species: 578018
type: SpeciesReference

589534
units: 456180
value: 0.0
type: LocalParameter

556474
stoichiometry: 1.0
species: 575564
type: SpeciesReference

611499
stoichiometry: 3.0
species: 575090
type: SpeciesReference

586346
units: 456180
value: 0.0
type: LocalParameter

582689
units: 456180
value: 1000.0
type: LocalParameter

591384
units: 456180
value: 0.0
type: LocalParameter

612091
stoichiometry: 1.0
species: 576052
type: SpeciesReference

482087
stoichiometry: 1.0
species: 573786
type: SpeciesReference

590744
units: 456180
value: 0.0
type: LocalParameter

511700
stoichiometry: 1.0
species: 574239
type: SpeciesReference

477484
stoichiometry: 1.0
species: 575920
type: SpeciesReference

578042
notes: FORMULA: C37H74N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: phosphatidylethanolamine (dihexadecanoyl, n-C16:0)
type: Species

579836
kinetic law: 518639
product: 518627
reactant: 518615
notes: GENE_ASSOCIATION: b2802 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 5.3.1.25
fast: false
reversible: true
name: L-fucose isomerase
type: Reaction

585199
units: 456180
value: 0.0
type: LocalParameter

591385
units: 456180
value: 0.0
type: LocalParameter

611072
stoichiometry: 1.0
species: 576016
type: SpeciesReference

481686
stoichiometry: 1.0
species: 577676
type: SpeciesReference

591383
units: 456180
value: 0.0
type: LocalParameter

456972
stoichiometry: 6.58E-4
species: 575450
type: SpeciesReference

582688
units: 456180
value: 0.0
type: LocalParameter

586343
units: 456180
value: 0.0
type: LocalParameter

536462
stoichiometry: 1.0
species: 575090
type: SpeciesReference

507983
stoichiometry: 1.0
species: 573886
type: SpeciesReference

578043
notes: FORMULA: C37H70N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)
type: Species

579835
fast: false
kinetic law: 518603
type: Reaction
reactant: 518567
product: 518579
reactant: 518555
notes: GENE_ASSOCIATION: (b3925 or b4232 or b2930) SUBSYSTEM: Glycolysis/Gluconeogenesis EC Number: 3.1.3.11
name: fructose-bisphosphatase
reversible: false
product: 518591

590745
units: 456180
value: 0.0
type: LocalParameter

474340
stoichiometry: 1.0
species: 575824
type: SpeciesReference

589536
units: 456180
value: 1000.0
type: LocalParameter

517093
stoichiometry: 1.0
species: 575090
type: SpeciesReference

618032
stoichiometry: 1.0
species: 576226
type: SpeciesReference

582687
units: 456180
value: 0.0
type: LocalParameter

602252
stoichiometry: 1.0
species: 577296
type: SpeciesReference

585197
units: 456180
value: 1000.0
type: LocalParameter

590746
units: 456180
value: -1000.0
type: LocalParameter

623221
stoichiometry: 1.0
species: 577455
type: SpeciesReference

457923
stoichiometry: 0.027017
species: 574571
type: SpeciesReference

520062
stoichiometry: 1.0
species: 575099
type: SpeciesReference

579833
kinetic law: 518543
product: 518531
product: 518519
reactant: 518507
notes: GENE_ASSOCIATION: b2925 SUBSYSTEM: Pentose Phosphate Pathway EC Number: 4.1.2.13
fast: false
reversible: true
name: Sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase
type: Reaction

608837
stoichiometry: 1.0
species: 574763
type: SpeciesReference

589535
units: 456180
value: 0.0
type: LocalParameter

574904
notes: FORMULA: C6H13O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Galactitol 1-phosphate
type: Species

619314
stoichiometry: 1.0
species: 577425
type: SpeciesReference

492569
stoichiometry: 1.0
species: 575522
type: SpeciesReference

617815
stoichiometry: 1.0
species: 575824
type: SpeciesReference

488226
stoichiometry: 1.0
species: 574337
type: SpeciesReference

594685
units: 456180
value: 0.0
type: LocalParameter

520208
stoichiometry: 1.0
species: 574766
type: SpeciesReference

578045
notes: FORMULA: C41H82N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: phosphatidylethanolamine (dioctadecanoyl, n-C18:0)
type: Species

582686
units: 456180
value: 0.0
type: LocalParameter

590140
units: 456180
value: 1000.0
type: LocalParameter

473756
stoichiometry: 1.0
species: 574128
type: SpeciesReference

511026
stoichiometry: 1.0
species: 574373
type: SpeciesReference

574901
notes: FORMULA: C6H11O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Galactonate
type: Species

590748
units: 456180
value: 1000.0
type: LocalParameter

578046
notes: FORMULA: C41H78N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)
type: Species

590141
units: 456180
value: 0.0
type: LocalParameter

579423
kinetic law: 500470
product: 500458
reactant: 500446
notes: GENE_ASSOCIATION: (b1377 or b2215 or b0929 or b0241) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-carnitine transport via diffusion (extracellular to periplasm)
type: Reaction

582685
units: 456180
value: 1000.0
type: LocalParameter

548977
stoichiometry: 1.0
species: 575321
type: SpeciesReference

586572
units: 456180
value: 0.0
type: LocalParameter

625047
stoichiometry: 1.0
species: 575090
type: SpeciesReference

574902
stoichiometry: 1.0
species: 575669
type: SpeciesReference

594683
units: 456180
value: 1000.0
type: LocalParameter

590749
units: 456180
value: 0.0
type: LocalParameter

579839
kinetic law: 518759
product: 518747
product: 518735
reactant: 518723
notes: GENE_ASSOCIATION: (b2738 or b2800) SUBSYSTEM: Alternate Carbon Metabolism EC Number: 4.1.2.17
fast: false
reversible: true
name: L-fuculose 1-phosphate aldolase
type: Reaction

581958
units: 456180
value: 1000.0
type: LocalParameter

558793
stoichiometry: 1.0
species: 576220
type: SpeciesReference

582684
units: 456180
value: 0.0
type: LocalParameter

579422
reversible: true
notes: GENE_ASSOCIATION: b4111 SUBSYSTEM: Transport, Inner Membrane EC Number:
kinetic law: 500434
name: D-carnitine outward transport (H+ antiport)
reactant: 500386
product: 500410
product: 500422
type: Reaction
fast: false
reactant: 500398

582683
units: 456180
value: 0.0
type: LocalParameter

534607
stoichiometry: 1.0
species: 575923
type: SpeciesReference

463486
stoichiometry: 1.0
species: 577122
type: SpeciesReference

591388
units: 456180
value: 0.0
type: LocalParameter

612987
stoichiometry: 1.0
species: 574478
type: SpeciesReference

589532
units: 456180
value: 0.0
type: LocalParameter

518482
stoichiometry: 1.0
species: 574865
type: SpeciesReference

586348
units: 456180
value: 0.0
type: LocalParameter

561160
stoichiometry: 1.0
species: 575399
type: SpeciesReference

594682
units: 456180
value: -1000.0
type: LocalParameter

542838
stoichiometry: 1.0
species: 575195
type: SpeciesReference

552541
stoichiometry: 1.0
species: 574321
type: SpeciesReference

603497
stoichiometry: 1.0
species: 574437
type: SpeciesReference

618589
stoichiometry: 1.0
species: 576292
type: SpeciesReference

586570
units: 456180
value: 1000.0
type: LocalParameter

550670
stoichiometry: 1.0
species: 577530
type: SpeciesReference

579421
reactant: 500302
product: 500350
fast: false
notes: GENE_ASSOCIATION: (b2677 and b2678 and b2679) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 500289
product: 500338
reversible: false
type: Reaction
name: D-carnitine transport via ABC system (periplasm)
product: 500326
reactant: 500314
kinetic law: 500374
product: 500362

578048
notes: FORMULA: C8H12N CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phenethylamine
type: Species

582682
units: 456180
value: 0.0
type: LocalParameter

590144
units: 456180
value: 0.0
type: LocalParameter

502612
stoichiometry: 1.0
species: 575105
type: SpeciesReference

589531
units: 456180
value: 1000.0
type: LocalParameter

591387
units: 456180
value: 1000.0
type: LocalParameter

586349
units: 456180
value: 0.0
type: LocalParameter

594681
units: 456180
value: 0.0
type: LocalParameter

524502
stoichiometry: 1.0
species: 575711
type: SpeciesReference

470651
stoichiometry: 1.0
species: 575099
type: SpeciesReference

595204
units: 456180
value: 0.0
type: LocalParameter

579429
product: 500723
name: L-carnitine/D-carnitine antiporter (periplasm)
notes: GENE_ASSOCIATION: b0040 SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 500736
reactant: 500711
fast: false
type: Reaction
reversible: false
reactant: 500699
kinetic law: 500748

507395
stoichiometry: 1.0
species: 576016
type: SpeciesReference

590145
units: 456180
value: -1000.0
type: LocalParameter

588918
units: 456180
value: 0.0
type: LocalParameter

581956
units: 456180
value: 0.0
type: LocalParameter

585192
units: 456180
value: 1000.0
type: LocalParameter

586019
units: 456180
value: -1000.0
type: LocalParameter

527737
stoichiometry: 1.0
species: 575099
type: SpeciesReference

462809
stoichiometry: 1.0
species: 577038
type: SpeciesReference

485799
stoichiometry: 1.0
species: 574970
type: SpeciesReference

583331
units: 456180
value: 0.0
type: LocalParameter

526806
stoichiometry: 1.0
species: 577833
type: SpeciesReference

601166
stoichiometry: 1.0
species: 574452
type: SpeciesReference

595205
units: 456180
value: 1000.0
type: LocalParameter

590146
units: 456180
value: 1000.0
type: LocalParameter

575354
notes: FORMULA: C4H4O5 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Malate
type: Species

490016
stoichiometry: 1.0
species: 577686
type: SpeciesReference

587728
units: 456180
value: 1000.0
type: LocalParameter

588919
units: 456180
value: -1000.0
type: LocalParameter

585191
stoichiometry: 1.0
species: 575522
type: SpeciesReference

579427
product: 500675
reactant: 500639
type: Reaction
fast: false
kinetic law: 500687
product: 500663
name: Carnitine/butyrobetaine antiporter (periplasm)
reactant: 500651
reversible: false
notes: GENE_ASSOCIATION: b0040 SUBSYSTEM: Transport, Inner Membrane EC Number:

461431
stoichiometry: 1.0
species: 576867
type: SpeciesReference

581957
units: 456180
value: 0.0
type: LocalParameter

551275
stoichiometry: 1.0
species: 577890
type: SpeciesReference

580653
type: Reaction
name: methionine synthase
product: 558479
reactant: 558443
fast: false
kinetic law: 558503
product: 558491
reactant: 558455
reversible: false
product: 558467
notes: GENE_ASSOCIATION: (b4019 or b3829) SUBSYSTEM: Methionine Metabolism EC Number: 2.1.1.13

521942
stoichiometry: 1.0
species: 576870
type: SpeciesReference

491841
stoichiometry: 1.0
species: 575090
type: SpeciesReference

583332
units: 456180
value: -1000.0
type: LocalParameter

586016
units: 456180
value: 0.0
type: LocalParameter

583334
units: 456180
value: 1000.0
type: LocalParameter

580031
product: 529175
reversible: false
kinetic law: 529187
reactant: 529103
reactant: 529115
notes: GENE_ASSOCIATION: b1849 SUBSYSTEM: Purine and Pyrimidine Biosynthesis EC Number:
product: 529139
name: GAR transformylase-T
type: Reaction
product: 529151
product: 529163
reactant: 529127
fast: false

595202
units: 456180
value: 0.0
type: LocalParameter

590147
units: 456180
value: 0.0
type: LocalParameter

579426
product: 500603
name: L-carnitine outward transport (H+ antiport)
fast: false
kinetic law: 500627
reactant: 500591
notes: GENE_ASSOCIATION: b4111 SUBSYSTEM: Transport, Inner Membrane EC Number:
type: Reaction
reversible: true
product: 500615
reactant: 500579

587940
units: 456180
value: 0.0
type: LocalParameter

594239
units: 456180
value: 0.0
type: LocalParameter

585190
units: 456180
value: 0.0
type: LocalParameter

489277
stoichiometry: 1.0
species: 574253
type: SpeciesReference

580652
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Methionine Metabolism EC Number:
reversible: false
reactant: 558395
fast: false
product: 558419
reactant: 558383
product: 558407
kinetic law: 558431
name: methionine oxidation 2 (spontaneous)
type: Reaction

581954
units: 456180
value: 1000.0
type: LocalParameter

615607
stoichiometry: 1.0
species: 576217
type: SpeciesReference

595203
units: 456180
value: 0.0
type: LocalParameter

583335
units: 456180
value: 0.0
type: LocalParameter

590148
units: 456180
value: 0.0
type: LocalParameter

506874
stoichiometry: 1.0
species: 575090
type: SpeciesReference

581955
units: 456180
value: 0.0
type: LocalParameter

458765
stoichiometry: 1.0
species: 576505
type: SpeciesReference

579425
reactant: 500482
notes: GENE_ASSOCIATION: (b2677 and b2678 and b2679) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 500494
product: 500555
product: 500543
kinetic law: 500567
type: Reaction
fast: false
product: 500519
reactant: 500507
name: L-carnitine transport via ABC system (periplasm)
reversible: false
product: 500531

594238
units: 456180
value: 1000.0
type: LocalParameter

543349
stoichiometry: 1.0
species: 575249
type: SpeciesReference

586018
units: 456180
value: 0.0
type: LocalParameter

590149
units: 456180
value: -1000.0
type: LocalParameter

575351
notes: FORMULA: C4H4O5 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Malate
type: Species

481113
stoichiometry: 1.0
species: 574928
type: SpeciesReference

569167
stoichiometry: 1.0
species: 575785
type: SpeciesReference

587943
units: 456180
value: 0.0
type: LocalParameter

495324
stoichiometry: 2.0
species: 575090
type: SpeciesReference

601852
stoichiometry: 1.0
species: 575099
type: SpeciesReference

517891
stoichiometry: 1.0
species: 574373
type: SpeciesReference

585196
units: 456180
value: 0.0
type: LocalParameter

581952
units: 456180
value: 0.0
type: LocalParameter

580650
reactant: 558334
product: 558347
reversible: false
fast: false
product: 558359
reactant: 558322
kinetic law: 558371
name: methionine oxidation (spontaneous)
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Methionine Metabolism EC Number:
type: Reaction

580428
kinetic law: 547831
product: 547819
name: L-alanyl-L-glutamate transport in via proton symport (periplasm)
notes: GENE_ASSOCIATION: (b1634 or b3496 or b4130 or b0709) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 547783
reversible: false
product: 547807
reactant: 547795
fast: false
type: Reaction

530999
stoichiometry: 1.0
species: 574952
type: SpeciesReference

506994
stoichiometry: 1.0
species: 574024
type: SpeciesReference

545958
stoichiometry: 1.0
species: 574187
type: SpeciesReference

623449
stoichiometry: 1.0
species: 574281
type: SpeciesReference

607107
stoichiometry: 1.0
species: 575213
type: SpeciesReference

477953
stoichiometry: 1.0
species: 574575
type: SpeciesReference

585195
units: 456180
value: 0.0
type: LocalParameter

581953
units: 456180
value: 0.0
type: LocalParameter

538017
stoichiometry: 1.0
species: 575824
type: SpeciesReference

588915
units: 456180
value: 1000.0
type: LocalParameter

595200
units: 456180
value: 1000.0
type: LocalParameter

580427
kinetic law: 547770
product: 547758
reactant: 547746
notes: GENE_ASSOCIATION: (b2215 or b1377 or b0241 or b0929) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-alanyl-L-glutamate transport via diffusion (extracellular to periplasm)
type: Reaction

527302
stoichiometry: 1.0
species: 574883
type: SpeciesReference

587941
units: 456180
value: 1000.0
type: LocalParameter

575129
notes: FORMULA: C37H60N7O17P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: trans-Hexadec-2-enoyl-CoA
type: Species

590740
units: 456180
value: 0.0
type: LocalParameter

587945
units: 456180
value: 0.0
type: LocalParameter

609663
stoichiometry: 1.0
species: 578109
type: SpeciesReference

564889
stoichiometry: 1.0
species: 574239
type: SpeciesReference

540183
stoichiometry: 1.0
species: 575824
type: SpeciesReference

573744
stoichiometry: 1.0
species: 575099
type: SpeciesReference

530371
stoichiometry: 1.0
species: 577856
type: SpeciesReference

581950
units: 456180
value: 1000.0
type: LocalParameter

588916
units: 456180
value: 0.0
type: LocalParameter

590741
units: 456180
value: 0.0
type: LocalParameter

485363
stoichiometry: 1.0
species: 574287
type: SpeciesReference

484844
stoichiometry: 1.0
species: 577887
type: SpeciesReference

615799
stoichiometry: 1.0
species: 575099
type: SpeciesReference

587944
units: 456180
value: 0.0
type: LocalParameter

575126
notes: FORMULA: C37H60N7O17P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hexadecenoyl-CoA (n-C16:1CoA)
type: Species

495749
stoichiometry: 1.0
species: 575851
type: SpeciesReference

459013
stoichiometry: 1.0
species: 576535
type: SpeciesReference

580425
reactant: 547686
kinetic law: 547734
name: L-alanyl-D-glutamate transport in via proton symport (periplasm)
product: 547722
product: 547710
notes: GENE_ASSOCIATION: (b1634 or b3496 or b4130 or b0709) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 547698
fast: false
reversible: false
type: Reaction

583330
units: 456180
value: 0.0
type: LocalParameter

557151
stoichiometry: 1.0
species: 577976
type: SpeciesReference

581951
units: 456180
value: 0.0
type: LocalParameter

578040
notes: FORMULA: C33H62N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: phosphatidylethanolamine (ditetradec-7-enoyl, n-C14:1)
type: Species

492350
stoichiometry: 4.0
species: 577887
type: SpeciesReference

590742
units: 456180
value: 1000.0
type: LocalParameter

585193
units: 456180
value: 0.0
type: LocalParameter

488455
stoichiometry: 2.0
species: 574343
type: SpeciesReference

460925
stoichiometry: 1.0
species: 576772
type: SpeciesReference

523827
stoichiometry: 1.0
species: 574829
type: SpeciesReference

580649
kinetic law: 558310
product: 558298
reactant: 558285
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-methionine transport via diffusion (extracellular to periplasm)
type: Reaction

591979
units: 456180
value: 0.0
type: LocalParameter

581961
units: 456180
value: 0.0
type: LocalParameter

588911
units: 456180
value: 0.0
type: LocalParameter

489496
stoichiometry: 1.0
species: 574373
type: SpeciesReference

586794
units: 456180
value: -1000.0
type: LocalParameter

580037
type: Reaction
product: 529548
fast: false
reactant: 529512
reactant: 529500
name: GDP-mannose phyrophosphatase
kinetic law: 529560
reversible: false
product: 529536
notes: GENE_ASSOCIATION: b2467 SUBSYSTEM: Cell Envelope Biosynthesis EC Number:
product: 529524

586023
units: 456180
value: 0.0
type: LocalParameter

573527
stoichiometry: 1.0
species: 574478
type: SpeciesReference

594231
units: 456180
value: 0.0
type: LocalParameter

587720
units: 456180
value: 0.0
type: LocalParameter

575138
notes: FORMULA: C17H31N2O8PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hexanoyl-ACP (n-C6:0ACP)
type: Species

586793
units: 456180
value: 0.0
type: LocalParameter

551058
stoichiometry: 1.0
species: 577890
type: SpeciesReference

519857
stoichiometry: 1.0
species: 577804
type: SpeciesReference

581960
units: 456180
value: 0.0
type: LocalParameter

580436
kinetic law: 548192
reversible: true
product: 548168
reactant: 548144
notes: GENE_ASSOCIATION: SUBSYSTEM: Methylglyoxal Metabolism EC Number: 1.1.1.77
fast: false
reactant: 548132
reactant: 548156
product: 548180
name: lacaldehyde reductase (R-propane-1,2-diol forming)
type: Reaction

580038
reactant: 529572
reactant: 529584
product: 529609
name: guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase
kinetic law: 529622
fast: false
type: Reaction
product: 529597
reversible: false
notes: GENE_ASSOCIATION: b3650 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 3.1.7.2

588910
stoichiometry: 1.0
species: 578076
type: SpeciesReference

586022
units: 456180
value: 0.0
type: LocalParameter

581280
fast: false
product: 601804
reversible: false
product: 601792
reactant: 601756
kinetic law: 601840
notes: GENE_ASSOCIATION: b2476 SUBSYSTEM: Purine and Pyrimidine Biosynthesis EC Number: 6.3.2.6
product: 601828
reactant: 601780
reactant: 601768
type: Reaction
product: 601816
name: phosphoribosylaminoimidazolesuccinocarboxamide synthase

594232
units: 456180
value: 1000.0
type: LocalParameter

587947
units: 456180
value: 1000.0
type: LocalParameter

521044
stoichiometry: 2.0
species: 574799
type: SpeciesReference

495032
stoichiometry: 1.0
species: 575090
type: SpeciesReference

591977
units: 456180
value: 0.0
type: LocalParameter

580647
reversible: false
reactant: 558212
reactant: 558187
fast: false
product: 558224
product: 558236
product: 558248
type: Reaction
product: 558260
notes: GENE_ASSOCIATION: (b0198 and b0199 and b0197) SUBSYSTEM: Transport, Inner Membrane EC Number:
name: D-methionine transport via ABC system (periplasm)
reactant: 558199
kinetic law: 558272

582809
units: 456180
value: 1000.0
type: LocalParameter

587721
units: 456180
value: 0.0
type: LocalParameter

605753
stoichiometry: 1.0
species: 576418
type: SpeciesReference

588913
units: 456180
value: -1000.0
type: LocalParameter

579299
product: 494317
notes: GENE_ASSOCIATION: (b1711 and b1709 and b0158) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 494329
kinetic law: 494365
reactant: 494281
reactant: 494293
fast: false
type: Reaction
reversible: false
name: Cobinamide transport via ABC system (uptake, periplasm)
product: 494353
product: 494341
reactant: 494305

572681
stoichiometry: 1.0
species: 573920
type: SpeciesReference

580433
fast: false
kinetic law: 548035
reactant: 547999
type: Reaction
product: 548011
reactant: 547987
product: 548023
notes: GENE_ASSOCIATION: b0237 SUBSYSTEM: Murein Recycling EC Number:
reversible: false
name: L-alanyl-gamma-L-glutamate peptidase

563294
stoichiometry: 1.0
species: 575099
type: SpeciesReference

564671
stoichiometry: 1.0
species: 575090
type: SpeciesReference

585607
units: 456180
value: 0.0
type: LocalParameter

587948
units: 456180
value: 0.0
type: LocalParameter

536049
stoichiometry: 1.0
species: 575525
type: SpeciesReference

577095
notes: FORMULA: C6H12O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: myo-Inositol
type: Species

496278
stoichiometry: 1.0
species: 575090
type: SpeciesReference

591978
units: 456180
value: 0.0
type: LocalParameter

588912
units: 456180
value: 0.0
type: LocalParameter

521723
stoichiometry: 2.0
species: 575090
type: SpeciesReference

580434
reversible: false
product: 548083
name: lactaldehyde dehydrogenase
reactant: 548059
reactant: 548047
notes: GENE_ASSOCIATION: b1415 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 1.2.1.21
fast: false
kinetic law: 548120
product: 548107
product: 548095
reactant: 548071
type: Reaction

586791
units: 456180
value: 0.0
type: LocalParameter

586020
units: 456180
value: 1000.0
type: LocalParameter

585608
units: 456180
value: 0.0
type: LocalParameter

515431
stoichiometry: 1.0
species: 575090
type: SpeciesReference

594230
units: 456180
value: 0.0
type: LocalParameter

587723
units: 456180
value: 1000.0
type: LocalParameter

575135
notes: FORMULA: C49H56FeN4O5 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Heme O
type: Species

580033
type: Reaction
reactant: 529247
product: 529283
product: 529271
notes: GENE_ASSOCIATION: b1415 SUBSYSTEM: Folate Metabolism EC Number: 1.2.1.21
reactant: 529235
kinetic law: 529308
product: 529295
fast: false
name: Glycolaldehyde dehydrogenase
reactant: 529259
reversible: false

519410
stoichiometry: 1.0
species: 576049
type: SpeciesReference

488878
stoichiometry: 1.0
species: 575920
type: SpeciesReference

580431
product: 547951
reversible: false
type: Reaction
reactant: 547915
name: L-Lactaldehyde:NADP+ 1-oxidoreductase
reactant: 547927
fast: false
reactant: 547939
product: 547963
notes: GENE_ASSOCIATION: SUBSYSTEM: Methylglyoxal Metabolism EC Number: 1.1.1.21
kinetic law: 547975

559745
stoichiometry: 1.0
species: 577664
type: SpeciesReference

582807
units: 456180
value: 0.0
type: LocalParameter

594236
units: 456180
value: 0.0
type: LocalParameter

575132
notes: FORMULA: C27H49N2O8PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: cis-hexadec-9-enoyl-[acyl-carrier protein] (n-C16:1)
type: Species

587724
units: 456180
value: 0.0
type: LocalParameter

586799
units: 456180
value: 0.0
type: LocalParameter

595209
units: 456180
value: 0.0
type: LocalParameter

586027
units: 456180
value: 0.0
type: LocalParameter

583337
units: 456180
value: 0.0
type: LocalParameter

580032
kinetic law: 529223
product: 529211
reactant: 529199
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: gamma-butyrobetaine transport via diffusion (extracellular to periplasm)
type: Reaction

589105
units: 456180
value: 0.0
type: LocalParameter

605546
stoichiometry: 1.0
species: 578097
type: SpeciesReference

503252
stoichiometry: 0.5
species: 575558
type: SpeciesReference

580034
kinetic law: 529344
product: 529332
reactant: 529320
notes: GENE_ASSOCIATION: b2052 SUBSYSTEM: Cell Envelope Biosynthesis EC Number:
fast: false
reversible: false
name: GDP-4-dehydro-6-deoxy-D-mannose epimerase
type: Reaction

586797
units: 456180
value: 0.0
type: LocalParameter

582808
units: 456180
value: 0.0
type: LocalParameter

580646
fast: false
product: 558150
notes: GENE_ASSOCIATION: b2942 SUBSYSTEM: Methionine Metabolism EC Number: 2.5.1.6
reactant: 558125
kinetic law: 558175
name: methionine adenosyltransferase
product: 558163
type: Reaction
reactant: 558113
product: 558137
reversible: false
reactant: 558101

575348
notes: FORMULA: C5H10O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Lyxose
type: Species

586026
units: 456180
value: 1000.0
type: LocalParameter

595208
units: 456180
value: 0.0
type: LocalParameter

586798
units: 456180
value: 0.0
type: LocalParameter

613712
stoichiometry: 1.0
species: 575920
type: SpeciesReference

589106
units: 456180
value: -1000.0
type: LocalParameter

580643
kinetic law: 558017
product: 558005
reactant: 557993
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: true
name: Methanol reversible transport via diffusion (periplasm)
type: Reaction

580035
product: 529380
product: 529404
reversible: false
name: GDP diphosphokinase
reactant: 529368
notes: GENE_ASSOCIATION: (b2784 or b3650) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
kinetic law: 529416
fast: false
product: 529392
reactant: 529356
type: Reaction

582805
units: 456180
value: 1000.0
type: LocalParameter

532458
stoichiometry: 1.0
species: 575534
type: SpeciesReference

594234
units: 456180
value: 0.0
type: LocalParameter

587726
units: 456180
value: 0.0
type: LocalParameter

589107
units: 456180
value: 1000.0
type: LocalParameter

483730
stoichiometry: 1.0
species: 574239
type: SpeciesReference

583339
units: 456180
value: 1000.0
type: LocalParameter

475502
stoichiometry: 1.0
species: 575201
type: SpeciesReference

580430
type: Reaction
kinetic law: 547903
product: 547879
reversible: false
reactant: 547855
name: D-Lactaldehyde:NAD+ 1-oxidoreductase
product: 547891
reactant: 547843
reactant: 547867
notes: GENE_ASSOCIATION: b3945 SUBSYSTEM: Methylglyoxal Metabolism EC Number: 1.1.1.21
fast: false

580644
kinetic law: 558089
reversible: false
fast: false
notes: GENE_ASSOCIATION: b2747 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
product: 558077
reactant: 558029
reactant: 558041
type: Reaction
product: 558065
reactant: 558053

586795
units: 456180
value: 1000.0
type: LocalParameter

589109
units: 456180
value: 0.0
type: LocalParameter

499746
stoichiometry: 1.0
species: 574500
type: SpeciesReference

572160
stoichiometry: 1.0
species: 575519
type: SpeciesReference

580036
kinetic law: 529488
fast: false
reactant: 529440
product: 529464
notes: GENE_ASSOCIATION: b2051 SUBSYSTEM: Cell Envelope Biosynthesis EC Number:
reversible: false
product: 529452
type: Reaction
product: 529476
name: GDP-mannose mannosyl hydrolase
reactant: 529428

610412
stoichiometry: 1.0
species: 578111
type: SpeciesReference

488672
stoichiometry: 1.0
species: 577887
type: SpeciesReference

531317
stoichiometry: 1.0
species: 575090
type: SpeciesReference

582806
units: 456180
value: 0.0
type: LocalParameter

594235
units: 456180
value: 0.0
type: LocalParameter

560943
stoichiometry: 1.0
species: 577964
type: SpeciesReference

577092
notes: FORMULA: C8H7N CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Indole
type: Species

544572
stoichiometry: 1.0
species: 574476
type: SpeciesReference

587727
units: 456180
value: -1000.0
type: LocalParameter

575345
notes: FORMULA: C6H14N2OR CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Lysine-tRNA (Lys)
type: Species

586024
units: 456180
value: 0.0
type: LocalParameter

595206
units: 456180
value: 0.0
type: LocalParameter

583338
units: 456180
value: 0.0
type: LocalParameter

496702
stoichiometry: 1.0
species: 574460
type: SpeciesReference

582680
units: 456180
value: 0.0
type: LocalParameter

611290
stoichiometry: 1.0
species: 576079
type: SpeciesReference

596436
units: 456180
value: 1000.0
type: LocalParameter

513917
stoichiometry: 1.0
species: 577789
type: SpeciesReference

582803
units: 456180
value: 0.0
type: LocalParameter

579293
reactant: 493966
reactant: 493953
product: 494003
product: 493979
product: 493991
reversible: false
reactant: 493941
name: Lysine/Cadaverine antiporter (periplasm)
type: Reaction
notes: GENE_ASSOCIATION: b4132 SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
kinetic law: 494016

586350
units: 456180
value: 1000.0
type: LocalParameter

550244
stoichiometry: 1.0
species: 577890
type: SpeciesReference

589102
units: 456180
value: 1000.0
type: LocalParameter

501016
stoichiometry: 1.0
species: 576733
type: SpeciesReference

579840
type: Reaction
kinetic law: 518820
notes: GENE_ASSOCIATION: b0475 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 4.99.1.1
fast: false
reactant: 518772
reactant: 518784
product: 518808
reversible: false
name: Ferrochelatase
product: 518796

474120
stoichiometry: 1.0
species: 574373
type: SpeciesReference

473084
stoichiometry: 1.0
species: 577632
type: SpeciesReference

585602
units: 456180
value: 0.0
type: LocalParameter

566615
stoichiometry: 1.0
species: 575483
type: SpeciesReference

606153
stoichiometry: 2.0
species: 575090
type: SpeciesReference

582681
units: 456180
value: 1000.0
type: LocalParameter

581289
kinetic law: 602276
product: 602264
reactant: 602252
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-Prolinylglycine transport via diffusion (extracellular to periplasm)
type: Reaction

578049
notes: FORMULA: C30H58O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerol (didodecanoyl, n-C12:0)
type: Species

579294
kinetic law: 494064
product: 494052
product: 494040
reactant: 494028
notes: GENE_ASSOCIATION: (b1732 or b3942) SUBSYSTEM: Unassigned EC Number: 1.11.1.6
fast: false
reversible: false
name: catalase
type: Reaction

582804
units: 456180
value: 0.0
type: LocalParameter

586563
units: 456180
value: 0.0
type: LocalParameter

594689
units: 456180
value: 1000.0
type: LocalParameter

591972
units: 456180
value: 0.0
type: LocalParameter

526138
stoichiometry: 1.0
species: 576924
type: SpeciesReference

589103
units: 456180
value: 0.0
type: LocalParameter

596438
units: 456180
value: 0.0
type: LocalParameter

579291
kinetic law: 493929
product: 493916
reactant: 493903
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: calcium (Ca+2) transport via diffusion (extracellular to periplasm)
type: Reaction

581288
reactant: 602178
product: 602216
fast: false
name: L-Prolinylglycine (Pro-Gly) transport via ABC system (periplasm)
notes: GENE_ASSOCIATION: (b3544 and b3543 and b3542 and b3541 and b3540) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 602204
product: 602191
type: Reaction
reactant: 602166
kinetic law: 602240
reversible: false
product: 602228
reactant: 602154

586562
units: 456180
value: 0.0
type: LocalParameter

507552
stoichiometry: 1.0
species: 573814
type: SpeciesReference

615197
stoichiometry: 1.0
species: 577774
type: SpeciesReference

594686
units: 456180
value: 0.0
type: LocalParameter

621185
stoichiometry: 1.0
species: 578165
type: SpeciesReference

589104
stoichiometry: 1.0
species: 575717
type: SpeciesReference

572379
stoichiometry: 3.0
species: 575099
type: SpeciesReference

581286
product: 602117
reversible: false
fast: false
kinetic law: 602142
reactant: 602093
type: Reaction
notes: GENE_ASSOCIATION: b1014 SUBSYSTEM: Arginine and Proline Metabolism EC Number: 1.5.99.8
product: 602130
name: Proline dehydrogenase
reactant: 602081
product: 602105

512271
stoichiometry: 1.0
species: 575090
type: SpeciesReference

596439
units: 456180
value: 0.0
type: LocalParameter

538719
stoichiometry: 1.0
species: 578076
type: SpeciesReference

585600
units: 456180
value: 0.0
type: LocalParameter

619533
stoichiometry: 1.0
species: 578156
type: SpeciesReference

582802
units: 456180
value: 0.0
type: LocalParameter

536680
stoichiometry: 1.0
species: 577875
type: SpeciesReference

586561
units: 456180
value: 0.0
type: LocalParameter

591970
units: 456180
value: 0.0
type: LocalParameter

594687
units: 456180
value: 0.0
type: LocalParameter

481464
stoichiometry: 1.0
species: 574301
type: SpeciesReference

589525
units: 456180
value: 1000.0
type: LocalParameter

586569
units: 456180
value: 0.0
type: LocalParameter

609236
stoichiometry: 1.0
species: 576091
type: SpeciesReference

522453
stoichiometry: 1.0
species: 576897
type: SpeciesReference

577097
stoichiometry: 1.0
species: 575920
type: SpeciesReference

581285
kinetic law: 602069
product: 602057
reactant: 602045
notes: GENE_ASSOCIATION: b2024 SUBSYSTEM: Histidine Metabolism EC Number: 5.3.1.16
fast: false
reversible: true
name: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase
type: Reaction

508321
stoichiometry: 1.0
species: 575486
type: SpeciesReference

557404
stoichiometry: 1.0
species: 575923
type: SpeciesReference

478555
stoichiometry: 1.0
species: 575210
type: SpeciesReference

560505
stoichiometry: 1.0
species: 577977
type: SpeciesReference

579843
fast: false
reactant: 518928
kinetic law: 518988
reactant: 518940
product: 518964
reversible: false
product: 518952
name: Formate Dehydrogenase (menaquinone-8) (periplasm)
product: 518976
notes: GENE_ASSOCIATION: ((b1474 and b1475 and b1476) or (b3892 and b3893 and b3894)) SUBSYSTEM: Oxidative Phosphorylation EC Number: 1.2.2.1
reactant: 518916
type: Reaction

457534
stoichiometry: 6.73E-4
species: 577980
type: SpeciesReference

472805
stoichiometry: 1.0
species: 574476
type: SpeciesReference

586354
units: 456180
value: 0.0
type: LocalParameter

579297
fast: false
reactant: 494152
reactant: 494165
notes: GENE_ASSOCIATION: b1270 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 2.5.1.17
name: Cobinamide adenyltransferase
type: Reaction
product: 494191
reversible: true
reactant: 494139
product: 494178
kinetic law: 494204

596431
units: 456180
value: 1000.0
type: LocalParameter

591380
units: 456180
value: 0.0
type: LocalParameter

497911
stoichiometry: 1.0
species: 577871
type: SpeciesReference

586568
units: 456180
value: 0.0
type: LocalParameter

577098
notes: FORMULA: C10H12N4O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Inosine
type: Species

585606
units: 456180
value: 0.0
type: LocalParameter

579844
product: 519084
reactant: 519000
type: Reaction
product: 519048
product: 519060
name: FMNH2-dependent monooxygenase
notes: GENE_ASSOCIATION: b0935 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
reactant: 519012
reversible: false
reactant: 519024
product: 519072
product: 519036
fast: false
kinetic law: 519096

582800
units: 456180
value: 1000.0
type: LocalParameter

579298
reversible: false
type: Reaction
fast: false
name: Cobinamide transport via ton system (extermal)
product: 494257
reactant: 494230
kinetic law: 494269
notes: GENE_ASSOCIATION: (b3966 and (b1252 and b3005 and b3006)) SUBSYSTEM: Transport, Outer Membrane EC Number:
product: 494243
reactant: 494217

591381
units: 456180
value: 1000.0
type: LocalParameter

596432
units: 456180
value: 0.0
type: LocalParameter

474557
stoichiometry: 1.0
species: 574578
type: SpeciesReference

535855
stoichiometry: 1.0
species: 574149
type: SpeciesReference

589527
units: 456180
value: 0.0
type: LocalParameter

586353
units: 456180
value: 0.0
type: LocalParameter

553713
stoichiometry: 1.0
species: 575099
type: SpeciesReference

585603
units: 456180
value: -1000.0
type: LocalParameter

581283
reactant: 601960
fast: false
product: 601973
notes: GENE_ASSOCIATION: b2557 SUBSYSTEM: Purine and Pyrimidine Biosynthesis EC Number: 6.3.5.3
product: 601985
kinetic law: 602033
name: phosphoribosylformylglycinamidine synthase
product: 601997
reactant: 601924
product: 602009
reactant: 601948
product: 602021
type: Reaction
reactant: 601936
reversible: false

596434
units: 456180
value: 0.0
type: LocalParameter

540606
stoichiometry: 1.0
species: 574482
type: SpeciesReference

471160
stoichiometry: 1.0
species: 577880
type: SpeciesReference

579841
type: Reaction
reactant: 518856
reactant: 518832
reactant: 518844
name: formate dehydrogenase (quinone-8) (periplasm)
kinetic law: 518904
product: 518892
product: 518880
product: 518868
fast: false
notes: GENE_ASSOCIATION: ((b3892 and b3893 and b3894) or (b1474 and b1475 and b1476)) SUBSYSTEM: Oxidative Phosphorylation EC Number: 1.2.2.1
reversible: false

591973
units: 456180
value: 0.0
type: LocalParameter

586352
units: 456180
value: 0.0
type: LocalParameter

589528
units: 456180
value: 0.0
type: LocalParameter

586566
units: 456180
value: 0.0
type: LocalParameter

612769
stoichiometry: 1.0
species: 576088
type: SpeciesReference

579295
notes: GENE_ASSOCIATION: b3196 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
kinetic law: 494126
name: calcium / sodium antiporter (1:1)
product: 494114
reactant: 494076
reactant: 494088
reversible: true
type: Reaction
product: 494101

596435
units: 456180
value: 0.0
type: LocalParameter

614678
stoichiometry: 1.0
species: 577380
type: SpeciesReference

585604
units: 456180
value: 1000.0
type: LocalParameter

581282
reactant: 601864
product: 601888
reactant: 601852
reversible: false
kinetic law: 601912
type: Reaction
name: phosphoribosyl-ATP pyrophosphatase
product: 601876
product: 601900
notes: GENE_ASSOCIATION: b2026 SUBSYSTEM: Histidine Metabolism EC Number: 3.6.1.31
fast: false

525180
stoichiometry: 1.0
species: 575090
type: SpeciesReference

488007
stoichiometry: 1.0
species: 575099
type: SpeciesReference

602532
stoichiometry: 1.0
species: 577994
type: SpeciesReference

565045
stoichiometry: 1.0
species: 574373
type: SpeciesReference

500061
stoichiometry: 1.0
species: 574509
type: SpeciesReference

589100
units: 456180
value: 0.0
type: LocalParameter

591974
units: 456180
value: 1000.0
type: LocalParameter

518832
stoichiometry: 2.0
species: 575090
type: SpeciesReference

586565
units: 456180
value: 1000.0
type: LocalParameter

589529
units: 456180
value: 0.0
type: LocalParameter

508926
stoichiometry: 1.0
species: 573967
type: SpeciesReference

594694
units: 456180
value: 1000.0
type: LocalParameter

591106
units: 456180
value: 1000.0
type: LocalParameter

515407
stoichiometry: 1.0
species: 574239
type: SpeciesReference

534619
stoichiometry: 1.0
species: 575009
type: SpeciesReference

612975
stoichiometry: 1.0
species: 574373
type: SpeciesReference

553508
stoichiometry: 1.0
species: 574874
type: SpeciesReference

561172
stoichiometry: 1.0
species: 573874
type: SpeciesReference

589520
units: 456180
value: 1000.0
type: LocalParameter

581946
units: 456180
value: 1000.0
type: LocalParameter

587972
units: 456180
value: 0.0
type: LocalParameter

491600
stoichiometry: 1.0
species: 575785
type: SpeciesReference

579410
notes: GENE_ASSOCIATION: b2436 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 1.3.3.3
reactant: 499746
fast: false
type: Reaction
name: coproporphyrinogen oxidase (O2 required)
product: 499806
reactant: 499770
product: 499782
reactant: 499758
kinetic law: 499818
reversible: false
product: 499794

558781
stoichiometry: 1.0
species: 575426
type: SpeciesReference

590713
units: 456180
value: 0.0
type: LocalParameter

594693
units: 456180
value: 0.0
type: LocalParameter

591105
units: 456180
value: -1000.0
type: LocalParameter

524514
stoichiometry: 1.0
species: 577818
type: SpeciesReference

496978
stoichiometry: 1.0
species: 574466
type: SpeciesReference

624404
stoichiometry: 1.0
species: 575519
type: SpeciesReference

552578
stoichiometry: 1.0
species: 573854
type: SpeciesReference

478783
stoichiometry: 1.0
species: 575090
type: SpeciesReference

581947
units: 456180
value: 0.0
type: LocalParameter

578036
notes: FORMULA: C8H8O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phenylacetaldehyde
type: Species

623028
stoichiometry: 1.0
species: 575099
type: SpeciesReference

618372
stoichiometry: 1.0
species: 577407
type: SpeciesReference

591108
units: 456180
value: 0.0
type: LocalParameter

585610
units: 456180
value: 1000.0
type: LocalParameter

596429
units: 456180
value: 0.0
type: LocalParameter

574937
notes: FORMULA: C16H23N5O16P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: GDP-D-mannose
type: Species

581948
units: 456180
value: 0.0
type: LocalParameter

473744
stoichiometry: 1.0
species: 577887
type: SpeciesReference

587970
units: 456180
value: 0.0
type: LocalParameter

531779
stoichiometry: 1.0
species: 576244
type: SpeciesReference

578628
kinetic law: 465467
reactant: 465455
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Succinate exchange
type: Reaction

590711
units: 456180
value: 0.0
type: LocalParameter

594697
units: 456180
value: 0.0
type: LocalParameter

578033
notes: FORMULA: C39H75O8P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1,2-dioctadecanoyl-sn-glycerol 3-phosphate
type: Species

554185
stoichiometry: 1.0
species: 577931
type: SpeciesReference

622105
stoichiometry: 1.0
species: 575785
type: SpeciesReference

596428
units: 456180
value: 0.0
type: LocalParameter

574938
stoichiometry: 1.0
species: 578036
type: SpeciesReference

574700
notes: FORMULA: C16H22N2O15P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dTDP-4-dehydro-6-deoxy-L-mannose
type: Species

578034
notes: FORMULA: C39H71O8P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1,2-dioctadec-11-enoyl-sn-glycerol 3-phosphate
type: Species

474764
stoichiometry: 1.0
species: 575824
type: SpeciesReference

579411
reactant: 499842
product: 499854
type: Reaction
kinetic law: 499902
product: 499890
product: 499866
product: 499878
name: Oxygen Independent coproporphyrinogen-III oxidase
reactant: 499830
notes: GENE_ASSOCIATION: b3867 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
reversible: false
fast: false

581949
units: 456180
value: 0.0
type: LocalParameter

566651
stoichiometry: 1.0
species: 577890
type: SpeciesReference

594696
units: 456180
value: 0.0
type: LocalParameter

613904
stoichiometry: 1.0
species: 576049
type: SpeciesReference

590712
units: 456180
value: 0.0
type: LocalParameter

461407
stoichiometry: 1.0
species: 576864
type: SpeciesReference

589524
units: 456180
value: 0.0
type: LocalParameter

575381
notes: FORMULA: C18H32O16 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Maltotriose
type: Species

594690
units: 456180
value: 0.0
type: LocalParameter

591102
units: 456180
value: 0.0
type: LocalParameter

578031
notes: FORMULA: C35H63O8P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1,2-dihexadec-9-enoyl-sn-glycerol 3-phosphate
type: Species

536498
stoichiometry: 1.0
species: 577835
type: SpeciesReference

545511
stoichiometry: 1.0
species: 577913
type: SpeciesReference

581700
type: Reaction
fast: false
reactant: 619690
reactant: 619702
reversible: true
kinetic law: 619738
name: tyrosine transaminase
product: 619714
product: 619726
notes: GENE_ASSOCIATION: (b4054 or b0928) SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism EC Number: 2.6.1.5

563717
stoichiometry: 1.0
species: 575923
type: SpeciesReference

465527
stoichiometry: 1.0
species: 577374
type: SpeciesReference

586379
units: 456180
value: 0.0
type: LocalParameter

582652
units: 456180
value: 1000.0
type: LocalParameter

507971
stoichiometry: 1.0
species: 575597
type: SpeciesReference

590174
stoichiometry: 1.0
species: 577890
type: SpeciesReference

483718
stoichiometry: 1.0
species: 577665
type: SpeciesReference

622822
stoichiometry: 1.0
species: 574682
type: SpeciesReference

582650
units: 456180
value: 0.0
type: LocalParameter

589523
units: 456180
value: 0.0
type: LocalParameter

623233
stoichiometry: 1.0
species: 578175
type: SpeciesReference

608849
stoichiometry: 7.0
species: 575090
type: SpeciesReference

457935
stoichiometry: 0.027017
species: 574597
type: SpeciesReference

591101
units: 456180
value: 1000.0
type: LocalParameter

520050
stoichiometry: 1.0
species: 574373
type: SpeciesReference

613410
stoichiometry: 1.0
species: 574859
type: SpeciesReference

602264
stoichiometry: 1.0
species: 578090
type: SpeciesReference

578627
kinetic law: 465442
reactant: 465430
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Spermidine exchange
type: Reaction

602508
stoichiometry: 1.0
species: 575863
type: SpeciesReference

526831
stoichiometry: 1.0
species: 574373
type: SpeciesReference

574703
notes: FORMULA: C16H24N2O16P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dTDPglucose
type: Species

481673
stoichiometry: 1.0
species: 577664
type: SpeciesReference

556486
stoichiometry: 1.0
species: 575815
type: SpeciesReference

608632
stoichiometry: 1.0
species: 574373
type: SpeciesReference

591104
units: 456180
value: 0.0
type: LocalParameter

546759
stoichiometry: 1.0
species: 575273
type: SpeciesReference

594692
units: 456180
value: 0.0
type: LocalParameter

489919
stoichiometry: 1.0
species: 575528
type: SpeciesReference

623658
stoichiometry: 1.0
species: 575090
type: SpeciesReference

466032
stoichiometry: 1.0
species: 577437
type: SpeciesReference

580682
product: 559745
type: Reaction
kinetic law: 559769
reactant: 559733
fast: false
name: murein L,D-carboxypeptidase (murein4p4p) (periplasm)
notes: GENE_ASSOCIATION: SUBSYSTEM: Murein Biosynthesis EC Number: 3.4.17.13
reactant: 559721
reversible: false
product: 559757

581702
product: 619787
reversible: false
reactant: 619763
reactant: 619775
reactant: 619751
name: tyrosyl-tRNA synthetase
product: 619799
kinetic law: 619824
product: 619812
notes: GENE_ASSOCIATION: b1637 SUBSYSTEM: tRNA Charging EC Number: 6.1.1.1
fast: false
type: Reaction

544305
stoichiometry: 1.0
species: 577887
type: SpeciesReference

589521
units: 456180
value: 0.0
type: LocalParameter

557860
stoichiometry: 1.0
species: 575405
type: SpeciesReference

580680
reversible: false
fast: false
name: murein L,D-carboxypeptidase (murein5px4p) (periplasm)
reactant: 559660
notes: GENE_ASSOCIATION: SUBSYSTEM: Murein Biosynthesis EC Number: 3.4.17.13
product: 559697
product: 559685
kinetic law: 559709
type: Reaction
reactant: 559673

578624
kinetic law: 465394
reactant: 465382
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Sulfite exchange
type: Reaction

505469
stoichiometry: 1.0
species: 575654
type: SpeciesReference

578625
kinetic law: 465418
reactant: 465406
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Sulfate exchange
type: Reaction

578030
notes: FORMULA: C35H67O8P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1,2-dihexadecanoyl-sn-glycerol 3-phosphate
type: Species

582653
units: 456180
value: 0.0
type: LocalParameter

581703
notes: GENE_ASSOCIATION: (b1473 or b1907 or b0112 or b0576) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 619873
reactant: 619848
kinetic law: 619886
reactant: 619836
type: Reaction
reversible: true
name: L-tyrosine reversible transport via proton symport (periplasm)
product: 619860
fast: false

500109
stoichiometry: 1.0
species: 574517
type: SpeciesReference

582656
units: 456180
value: 0.0
type: LocalParameter

473504
stoichiometry: 1.0
species: 577664
type: SpeciesReference

547347
stoichiometry: 1.0
species: 575297
type: SpeciesReference

568329
stoichiometry: 1.0
species: 574231
type: SpeciesReference

583341
units: 456180
value: 0.0
type: LocalParameter

480921
stoichiometry: 1.0
species: 574239
type: SpeciesReference

565493
stoichiometry: 1.0
species: 577887
type: SpeciesReference

599825
stoichiometry: 1.0
species: 575090
type: SpeciesReference

579419
product: 500241
fast: false
kinetic law: 500277
notes: GENE_ASSOCIATION: b0037 SUBSYSTEM: Oxidative Phosphorylation EC Number:
reactant: 500217
type: Reaction
product: 500253
reversible: false
reactant: 500205
name: D-Carnitine-CoA Ligase
product: 500265
reactant: 500229

582655
units: 456180
value: 0.0
type: LocalParameter

507516
stoichiometry: 1.0
species: 575090
type: SpeciesReference

472128
stoichiometry: 1.0
species: 574476
type: SpeciesReference

581705
kinetic law: 619922
product: 619910
reactant: 619898
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-tyrosine transport via diffusion (extracellular to periplasm)
type: Reaction

479507
stoichiometry: 1.0
species: 577637
type: SpeciesReference

583342
units: 456180
value: 0.0
type: LocalParameter

470077
stoichiometry: 1.0
species: 576151
type: SpeciesReference

580683
product: 559818
notes: GENE_ASSOCIATION: SUBSYSTEM: Murein Biosynthesis EC Number: 3.4.17.13
reversible: false
product: 559806
name: murein L,D-carboxypeptidase (murein5p5p) (periplasm)
reactant: 559781
fast: false
kinetic law: 559830
reactant: 559793
type: Reaction

572391
stoichiometry: 1.0
species: 575519
type: SpeciesReference

496290
stoichiometry: 1.0
species: 575785
type: SpeciesReference

574706
notes: FORMULA: C16H24N2O15P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dTDP-L-rhamnose
type: Species

615763
stoichiometry: 1.0
species: 578141
type: SpeciesReference

495737
stoichiometry: 2.0
species: 575528
type: SpeciesReference

580062
name: D-glucarate transport via proton symport, reversible (periplasm)
fast: false
product: 530781
kinetic law: 530793
notes: GENE_ASSOCIATION: (b3127 or b2789) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 530757
product: 530769
reversible: true
reactant: 530745
type: Reaction

484832
stoichiometry: 1.0
species: 577670
type: SpeciesReference

485375
stoichiometry: 1.0
species: 573874
type: SpeciesReference

575384
notes: FORMULA: C24H42O21 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Maltotetraose
type: Species

579418
kinetic law: 500193
product: 500181
product: 500169
reactant: 500157
notes: GENE_ASSOCIATION: b0036 SUBSYSTEM: Oxidative Phosphorylation EC Number:
fast: false
reversible: true
name: Carnityl-CoA dehydratse
type: Reaction

526174
stoichiometry: 1.0
species: 575030
type: SpeciesReference

582658
units: 456180
value: 0.0
type: LocalParameter

506982
stoichiometry: 1.0
species: 573816
type: SpeciesReference

581706
fast: false
reactant: 619946
notes: GENE_ASSOCIATION: SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
reversible: false
product: 619970
reactant: 619958
kinetic law: 619994
product: 619982
reactant: 619934
type: Reaction
name: ThDP adenylyl transferase

573551
stoichiometry: 1.0
species: 574187
type: SpeciesReference

580686
notes: GENE_ASSOCIATION: SUBSYSTEM: Murein Biosynthesis EC Number: 3.4.17.13
name: murein L,D-carboxypeptidase (murein5px3p) (periplasm)
product: 559938
kinetic law: 559950
fast: false
reactant: 559914
product: 559926
reversible: false
reactant: 559902
type: Reaction

581940
units: 456180
value: 0.0
type: LocalParameter

495593
stoichiometry: 1.0
species: 575099
type: SpeciesReference

580061
kinetic law: 530733
product: 530721
product: 530709
reactant: 530696
notes: GENE_ASSOCIATION: (b2788 or b2787) SUBSYSTEM: Alternate Carbon Metabolism EC Number: 4.2.1.40
fast: false
reversible: false
name: glucarate dehydratase
type: Reaction

492386
stoichiometry: 1.0
species: 575099
type: SpeciesReference

573778
notes: FORMULA: C3H4O10P2 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Phospho-D-glyceroyl phosphate
type: Species

481101
stoichiometry: 1.0
species: 574563
type: SpeciesReference

575387
notes: FORMULA: C6H12O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Mannose
type: Species

527314
stoichiometry: 1.0
species: 575099
type: SpeciesReference

487054
stoichiometry: 1.0
species: 574586
type: SpeciesReference

582657
units: 456180
value: 1000.0
type: LocalParameter

581941
units: 456180
value: 0.0
type: LocalParameter

580685
name: murein L,D-carboxypeptidase (murein4p3p) (periplasm)
reactant: 559842
notes: GENE_ASSOCIATION: SUBSYSTEM: Murein Biosynthesis EC Number: 3.4.17.13
product: 559878
reversible: false
product: 559866
fast: false
reactant: 559854
type: Reaction
kinetic law: 559890

580060
kinetic law: 530683
product: 530670
product: 530657
reactant: 530644
notes: GENE_ASSOCIATION: b3126 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 4.1.2.20
fast: false
reversible: false
name: 5-dehydro-4-deoxyglucarate aldolase
type: Reaction

575386
stoichiometry: 1.0
species: 577485
type: SpeciesReference

513491
stoichiometry: 1.0
species: 575570
type: SpeciesReference

484130
stoichiometry: 1.0
species: 575522
type: SpeciesReference

477989
stoichiometry: 1.0
species: 574763
type: SpeciesReference

587978
units: 456180
value: 0.0
type: LocalParameter

580068
fast: false
reactant: 530975
name: glucosyltransferase II (LPS core synthesis)
product: 531011
kinetic law: 531035
type: Reaction
notes: GENE_ASSOCIATION: b3627 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
reactant: 530987
reversible: false
product: 530999
product: 531023

581942
units: 456180
value: 1000.0
type: LocalParameter

580688
kinetic law: 559998
product: 559986
reactant: 559974
reactant: 559962
notes: GENE_ASSOCIATION: SUBSYSTEM: Murein Recycling EC Number:
fast: false
reversible: false
name: murein L,D-endopeptidase (murein3px3p) (periplasm)
type: Reaction

525168
stoichiometry: 1.0
species: 577887
type: SpeciesReference

581708
reversible: false
kinetic law: 620066
product: 620030
reactant: 620018
product: 620042
reactant: 620006
notes: GENE_ASSOCIATION: b0179 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
name: UDP-3-O-(3-hydroxymyristoyl)glucosamine acyltransferase
product: 620054
type: Reaction
fast: false

579414
reversible: false
type: Reaction
kinetic law: 500049
reactant: 499987
reactant: 499999
product: 500011
fast: false
name: Carnitine-CoA Ligase
product: 500024
product: 500037
notes: GENE_ASSOCIATION: b0037 SUBSYSTEM: Oxidative Phosphorylation EC Number:
reactant: 499974

587977
units: 456180
value: 0.0
type: LocalParameter

507103
stoichiometry: 1.0
species: 574603
type: SpeciesReference

574709
notes: FORMULA: C10H13N2O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dTMP
type: Species

574931
notes: FORMULA: C16H21N5O15P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: GDP-4-dehydro-6-deoxy-D-mannose
type: Species

463074
stoichiometry: 1.0
species: 577071
type: SpeciesReference

583346
units: 456180
value: 0.0
type: LocalParameter

580067
kinetic law: 530963
name: glucosyltransferase I (LPS core synthesis)
reactant: 530914
product: 530951
fast: false
notes: GENE_ASSOCIATION: b3631 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
reactant: 530902
type: Reaction
product: 530939
product: 530927
reversible: false

582659
units: 456180
value: 0.0
type: LocalParameter

581943
units: 456180
value: 0.0
type: LocalParameter

579413
reactant: 499914
notes: GENE_ASSOCIATION: b0038 SUBSYSTEM: Oxidative Phosphorylation EC Number:
name: gamma-butyrobetainyl-CoA: carnitine CoA transferase
reactant: 499926
kinetic law: 499962
fast: false
type: Reaction
product: 499950
reversible: true
product: 499938

581709
product: 620114
product: 620150
reactant: 620078
reactant: 620102
reactant: 620090
name: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate synthetase
fast: false
notes: GENE_ASSOCIATION: b0085 SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 6.3.2.13
reversible: false
type: Reaction
product: 620126
kinetic law: 620162
product: 620138

587976
units: 456180
value: 0.0
type: LocalParameter

536255
stoichiometry: 1.0
species: 577887
type: SpeciesReference

582100
units: 456180
value: 1000.0
type: LocalParameter

521979
stoichiometry: 1.0
species: 577792
type: SpeciesReference

583343
units: 456180
value: 0.0
type: LocalParameter

522904
stoichiometry: 2.0
species: 574092
type: SpeciesReference

587974
units: 456180
value: 1000.0
type: LocalParameter

538295
stoichiometry: 1.0
species: 575081
type: SpeciesReference

504099
stoichiometry: 1.0
species: 575099
type: SpeciesReference

581944
units: 456180
value: 0.0
type: LocalParameter

579417
name: crotonobetainyl-CoA: carnitine CoA transferase
fast: false
type: Reaction
notes: GENE_ASSOCIATION: b0038 SUBSYSTEM: Oxidative Phosphorylation EC Number:
reversible: true
reactant: 500097
kinetic law: 500145
product: 500121
reactant: 500109
product: 500133

587975
stoichiometry: 1.0
species: 575752
type: SpeciesReference

520485
stoichiometry: 1.0
species: 575090
type: SpeciesReference

580065
product: 530854
reversible: false
product: 530878
fast: false
reactant: 530842
kinetic law: 530890
product: 530866
type: Reaction
name: glycogen synthase (ADPGlc)
notes: GENE_ASSOCIATION: b3429 SUBSYSTEM: Glycolysis/Gluconeogenesis EC Number: 2.4.1.21

582101
units: 456180
value: 0.0
type: LocalParameter

551287
stoichiometry: 1.0
species: 577832
type: SpeciesReference

580689
kinetic law: 560047
product: 560035
reactant: 560022
reactant: 560010
notes: GENE_ASSOCIATION: SUBSYSTEM: Murein Recycling EC Number:
fast: false
reversible: false
name: murein L,D-endopeptidase (murein5px3p) (periplasm)
type: Reaction

587973
units: 456180
value: 0.0
type: LocalParameter

581945
units: 456180
value: 0.0
type: LocalParameter

579415
kinetic law: 500085
product: 500073
reactant: 500061
notes: GENE_ASSOCIATION: b0036 SUBSYSTEM: Oxidative Phosphorylation EC Number:
fast: false
reversible: true
name: carnitine-CoA racemase
type: Reaction

490004
stoichiometry: 1.0
species: 575711
type: SpeciesReference

580064
kinetic law: 530830
product: 530818
reactant: 530805
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-glucarate transport via diffusion (extracellular to periplasm)
type: Reaction

601130
stoichiometry: 1.0
species: 575522
type: SpeciesReference

574934
notes: FORMULA: C16H23N5O15P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: GDP-L-fucose
type: Species

583345
units: 456180
value: 1000.0
type: LocalParameter

489228
stoichiometry: 1.0
species: 577659
type: SpeciesReference

553955
stoichiometry: 1.0
species: 575345
type: SpeciesReference

590591
units: 456180
value: 0.0
type: LocalParameter

595477
units: 456180
value: 0.0
type: LocalParameter

586013
units: 456180
value: 0.0
type: LocalParameter

593027
units: 456180
value: 0.0
type: LocalParameter

614124
stoichiometry: 1.0
species: 575090
type: SpeciesReference

479725
stoichiometry: 1.0
species: 574229
type: SpeciesReference

580679
kinetic law: 559648
product: 559636
reactant: 559624
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Outer Membrane EC Number:
fast: false
reversible: false
name: myo-inositol phosphate transport via diffusion (extracellular to periplasm)
type: Reaction

591969
units: 456180
value: 1000.0
type: LocalParameter

579267
product: 492715
notes: GENE_ASSOCIATION: b0827 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
reactant: 492679
product: 492727
type: Reaction
name: bis-molybdenum cofactor synthase
product: 492703
fast: false
reactant: 492691
kinetic law: 492739
reversible: false

572173
stoichiometry: 1.0
species: 573924
type: SpeciesReference

573770
notes: FORMULA: C39H76O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,2-Diacyl-sn-glycerol (dioctadecanoyl, n-C18:0)
type: Species

586012
units: 456180
value: 0.0
type: LocalParameter

590590
units: 456180
value: 0.0
type: LocalParameter

582103
units: 456180
value: 0.0
type: LocalParameter

532422
stoichiometry: 1.0
species: 574982
type: SpeciesReference

560931
stoichiometry: 1.0
species: 575090
type: SpeciesReference

531329
stoichiometry: 1.0
species: 575785
type: SpeciesReference

593026
units: 456180
value: 0.0
type: LocalParameter

502804
stoichiometry: 1.0
species: 574373
type: SpeciesReference

595475
units: 456180
value: 0.0
type: LocalParameter

604704
stoichiometry: 1.0
species: 575785
type: SpeciesReference

489216
stoichiometry: 1.0
species: 574347
type: SpeciesReference

499758
stoichiometry: 2.0
species: 575090
type: SpeciesReference

580466
kinetic law: 549787
product: 549774
reactant: 549762
notes: GENE_ASSOCIATION: (b1377 or b2215 or b0929 or b0241) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: lipoate transport via diffusion (extracellular to periplasm)
type: Reaction

468840
stoichiometry: 1.0
species: 574373
type: SpeciesReference

610400
stoichiometry: 1.0
species: 577338
type: SpeciesReference

583349
units: 456180
value: 0.0
type: LocalParameter

512246
stoichiometry: 1.0
species: 575525
type: SpeciesReference

586015
units: 456180
value: 1000.0
type: LocalParameter

582104
units: 456180
value: 0.0
type: LocalParameter

579871
product: 520619
type: Reaction
reactant: 520582
reversible: false
reactant: 520594
kinetic law: 520668
product: 520632
product: 520656
reactant: 520607
fast: false
name: ferric-dicitrate transport via ABC system (periplasm)
product: 520644
notes: GENE_ASSOCIATION: (b0153 and b0151 and b0152) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:

595479
units: 456180
value: 0.0
type: LocalParameter

575168
notes: FORMULA: C117H208N2O45P2 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: heptosyl-kdo2-lipidA
type: Species

491817
stoichiometry: 1.0
species: 577887
type: SpeciesReference

593025
units: 456180
value: 0.0
type: LocalParameter

519446
stoichiometry: 1.0
species: 575558
type: SpeciesReference

580467
kinetic law: 549859
reversible: false
reactant: 549811
fast: false
name: Lipid A disaccaride synthase
product: 549823
reactant: 549799
type: Reaction
product: 549835
product: 549847
notes: GENE_ASSOCIATION: b0182 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number: 2.4.1.182

586382
units: 456180
value: 0.0
type: LocalParameter

579269
reversible: false
reactant: 492775
name: bis-molybdopterin guanine dinucleotide synthase (single GDP)
reactant: 492763
notes: GENE_ASSOCIATION: (b3857 or (b3857 and b3856)) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
type: Reaction
product: 492799
reactant: 492751
fast: false
product: 492787
kinetic law: 492811

512981
stoichiometry: 1.0
species: 575579
type: SpeciesReference

579872
kinetic law: 520717
product: 520705
reactant: 520692
reactant: 520680
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
reversible: false
name: Fe(III) hydroxamate Fe-loading reaction (spontaneaous)
type: Reaction

583348
units: 456180
value: 0.0
type: LocalParameter

595478
units: 456180
value: 0.0
type: LocalParameter

582105
units: 456180
value: 1000.0
type: LocalParameter

458338
stoichiometry: 0.004338
species: 576052
type: SpeciesReference

602954
stoichiometry: 1.0
species: 575693
type: SpeciesReference

487273
stoichiometry: 1.0
species: 575030
type: SpeciesReference

586381
units: 456180
value: 0.0
type: LocalParameter

503288
stoichiometry: 1.0
species: 575923
type: SpeciesReference

474315
stoichiometry: 1.0
species: 574295
type: SpeciesReference

605558
stoichiometry: 1.0
species: 575911
type: SpeciesReference

565273
stoichiometry: 1.0
species: 575534
type: SpeciesReference

536037
stoichiometry: 1.0
species: 574934
type: SpeciesReference

587758
stoichiometry: 1.0
species: 574239
type: SpeciesReference

594265
units: 456180
value: 1000.0
type: LocalParameter

470615
stoichiometry: 1.0
species: 575522
type: SpeciesReference

593022
units: 456180
value: 1000.0
type: LocalParameter

581291
name: Prolyl-tRNA synthetase
notes: GENE_ASSOCIATION: b0194 SUBSYSTEM: tRNA Charging EC Number: 6.1.1.15
reactant: 602288
product: 602325
kinetic law: 602361
reactant: 602312
product: 602349
reactant: 602300
reversible: false
product: 602337
fast: false
type: Reaction

582106
stoichiometry: 1.0
species: 575090
type: SpeciesReference

564683
stoichiometry: 1.0
species: 577994
type: SpeciesReference

585619
units: 456180
value: 0.0
type: LocalParameter

605765
stoichiometry: 1.0
species: 575519
type: SpeciesReference

572693
stoichiometry: 2.0
species: 574239
type: SpeciesReference

580469
reversible: false
name: Lysophospholipase L1 (2-acylglycerophosphotidate, n-C12:0) (periplasm)
product: 549907
product: 549919
fast: false
product: 549895
reactant: 549883
kinetic law: 549931
notes: GENE_ASSOCIATION: b0494 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.1.5
type: Reaction
reactant: 549871

607892
stoichiometry: 1.0
species: 575099
type: SpeciesReference

591965
units: 456180
value: 0.0
type: LocalParameter

520632
stoichiometry: 1.0
species: 574790
type: SpeciesReference

547126
stoichiometry: 1.0
species: 577916
type: SpeciesReference

579263
kinetic law: 492496
product: 492484
reactant: 492472
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: beta-alanine transport via diffusion (extracellular to periplasm)
type: Reaction

593021
units: 456180
value: 0.0
type: LocalParameter

587759
units: 456180
value: 0.0
type: LocalParameter

582107
units: 456180
value: 0.0
type: LocalParameter

573776
notes: FORMULA: C3H8O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (S)-Propane-1,2-diol
type: Species

521759
stoichiometry: 1.0
species: 575947
type: SpeciesReference

591966
units: 456180
value: -1000.0
type: LocalParameter

594267
units: 456180
value: 0.0
type: LocalParameter

581293
stoichiometry: 1.0
species: 577925
type: SpeciesReference

545970
stoichiometry: 1.0
species: 575099
type: SpeciesReference

593020
units: 456180
value: 0.0
type: LocalParameter

587756
units: 456180
value: 1000.0
type: LocalParameter

582108
units: 456180
value: 0.0
type: LocalParameter

586011
units: 456180
value: 0.0
type: LocalParameter

573772
notes: FORMULA: C39H72O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,2-Diacyl-sn-glycerol (dioctadec-11-enoyl, n-C18:1)
type: Species

595900
units: 456180
value: 0.0
type: LocalParameter

594268
units: 456180
value: 0.0
type: LocalParameter

579265
fast: false
notes: GENE_ASSOCIATION: b0312 SUBSYSTEM: Unassigned EC Number: 1.2.1.8
type: Reaction
reactant: 492521
kinetic law: 492582
reversible: false
product: 492545
reactant: 492508
product: 492557
name: betaine-aldehyde dehydrogenase
reactant: 492533
product: 492569

523839
stoichiometry: 1.0
species: 575090
type: SpeciesReference

490925
stoichiometry: 1.0
species: 574425
type: SpeciesReference

582109
units: 456180
value: 0.0
type: LocalParameter

581292
product: 602447
type: Reaction
product: 602422
product: 602435
reactant: 602373
kinetic law: 602459
notes: GENE_ASSOCIATION: (b2677 and b2678 and b2679) SUBSYSTEM: Transport, Inner Membrane EC Number:
name: L-proline transport via ABC system (periplasm)
reversible: false
fast: false
reactant: 602386
product: 602410
reactant: 602398

587757
units: 456180
value: 0.0
type: LocalParameter

495044
stoichiometry: 1.0
species: 575785
type: SpeciesReference

521032
stoichiometry: 2.0
species: 574781
type: SpeciesReference

542862
stoichiometry: 1.0
species: 575201
type: SpeciesReference

586010
units: 456180
value: 1000.0
type: LocalParameter

573774
notes: FORMULA: C3H8O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (R)-Propane-1,2-diol
type: Species

500531
stoichiometry: 1.0
species: 574502
type: SpeciesReference

596857
stoichiometry: 1.0
species: 577887
type: SpeciesReference

519869
stoichiometry: 1.0
species: 574239
type: SpeciesReference

579266
product: 492643
notes: GENE_ASSOCIATION: b0312 SUBSYSTEM: Unassigned EC Number: 1.2.1.8
product: 492655
fast: false
reactant: 492594
product: 492631
type: Reaction
reactant: 492606
kinetic law: 492667
reversible: false
name: betaine-aldehyde dehydrogenase
reactant: 492618

594269
units: 456180
value: 0.0
type: LocalParameter

617851
stoichiometry: 1.0
species: 574603
type: SpeciesReference

589516
units: 456180
value: 0.0
type: LocalParameter

596421
units: 456180
value: 0.0
type: LocalParameter

587753
units: 456180
value: 0.0
type: LocalParameter

586388
stoichiometry: 1.0
species: 574239
type: SpeciesReference

552795
stoichiometry: 1.0
species: 574871
type: SpeciesReference

591961
units: 456180
value: 1000.0
type: LocalParameter

623875
stoichiometry: 1.0
species: 576439
type: SpeciesReference

458911
stoichiometry: 1.0
species: 576523
type: SpeciesReference

538209
stoichiometry: 1.0
species: 575099
type: SpeciesReference

579877
kinetic law: 520983
product: 520971
reactant: 520959
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: iron (III) transport via diffusion (extracellular to periplasm)
type: Reaction

471172
stoichiometry: 1.0
species: 578076
type: SpeciesReference

578634
kinetic law: 465563
reactant: 465551
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: L-tartrate exchange
type: Reaction

585615
units: 456180
value: 1000.0
type: LocalParameter

581295
notes: GENE_ASSOCIATION: b1015 SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 602556
kinetic law: 602580
name: Na+/Proline-L symporter (periplasm)
product: 602568
fast: false
reactant: 602532
reactant: 602544
reversible: false
type: Reaction

594261
units: 456180
value: 0.0
type: LocalParameter

553725
stoichiometry: 1.0
species: 574874
type: SpeciesReference

589517
units: 456180
value: 0.0
type: LocalParameter

461624
stoichiometry: 1.0
species: 576891
type: SpeciesReference

586387
units: 456180
value: 0.0
type: LocalParameter

587754
units: 456180
value: -1000.0
type: LocalParameter

596422
stoichiometry: 1.0
species: 577607
type: SpeciesReference

579879
fast: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
type: Reaction
reactant: 520995
product: 521020
reactant: 521008
product: 521056
product: 521044
name: Ferrichrome reductase
product: 521032
kinetic law: 521068
reversible: false

590599
units: 456180
value: 1000.0
type: LocalParameter

518844
stoichiometry: 1.0
species: 575923
type: SpeciesReference

608412
stoichiometry: 2.0
species: 575090
type: SpeciesReference

515625
stoichiometry: 1.0
species: 574760
type: SpeciesReference

578633
kinetic law: 465539
reactant: 465527
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-tartrate exchange
type: Reaction

596423
units: 456180
value: 0.0
type: LocalParameter

581294
reactant: 602471
fast: false
type: Reaction
reversible: true
kinetic law: 602520
product: 602495
name: L-proline reversible transport via proton symport (periplasm)
product: 602508
reactant: 602483
notes: GENE_ASSOCIATION: b4111 SUBSYSTEM: Transport, Inner Membrane EC Number:

612757
stoichiometry: 1.0
species: 575519
type: SpeciesReference

581298
reactant: 602641
type: Reaction
product: 602666
reversible: true
reactant: 602629
kinetic law: 602690
notes: GENE_ASSOCIATION: b1207 SUBSYSTEM: Histidine Metabolism EC Number: 2.7.6.1
product: 602654
name: phosphoribosylpyrophosphate synthetase
product: 602678
fast: false

579261
product: 492362
reactant: 492338
reversible: true
reactant: 492326
kinetic law: 492398
notes: GENE_ASSOCIATION: (((b3736 and b3737 and b3738) and (b3731 and b3732 and b3733 and b3734 and b3735) and b3739) or ((b3736 and b3737 and b3738) and (b3731 and b3732 and b3733 and b3734 and b3735))) SUBSYSTEM: Oxidative Phosphorylation EC Number: 3.6.3.14
product: 492386
name: ATP synthase (four protons for one ATP) (periplasm)
type: Reaction
fast: false
reactant: 492350
product: 492374

497947
stoichiometry: 1.0
species: 577716
type: SpeciesReference

590598
units: 456180
value: -1000.0
type: LocalParameter

457546
stoichiometry: 0.031798
species: 578042
type: SpeciesReference

595470
units: 456180
value: 0.0
type: LocalParameter

528911
stoichiometry: 1.0
species: 576966
type: SpeciesReference

523414
stoichiometry: 1.0
species: 574820
type: SpeciesReference

589513
units: 456180
value: 0.0
type: LocalParameter

594263
units: 456180
value: 0.0
type: LocalParameter

585617
units: 456180
value: 0.0
type: LocalParameter

581297
kinetic law: 602617
product: 602604
reactant: 602592
notes: GENE_ASSOCIATION: (b1377 or b2215 or b0241 or b0929) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-proline transport via diffusion (extracellular to periplasm)
type: Reaction

587752
units: 456180
value: 0.0
type: LocalParameter

596420
units: 456180
value: 1000.0
type: LocalParameter

586389
units: 456180
value: 1000.0
type: LocalParameter

579262
name: beta-alanine transport in via proton symport (periplasm)
product: 492448
notes: GENE_ASSOCIATION: b4208 SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 492424
type: Reaction
kinetic law: 492460
reactant: 492411
fast: false
reversible: false
product: 492436

474545
stoichiometry: 1.0
species: 574373
type: SpeciesReference

535867
stoichiometry: 1.0
species: 575525
type: SpeciesReference

589515
stoichiometry: 1.0
species: 575743
type: SpeciesReference

527761
stoichiometry: 1.0
species: 577845
type: SpeciesReference

591964
units: 456180
value: 0.0
type: LocalParameter

590597
units: 456180
value: 0.0
type: LocalParameter

585618
units: 456180
value: 0.0
type: LocalParameter

590719
units: 456180
value: -1000.0
type: LocalParameter

578631
kinetic law: 465515
reactant: 465503
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: sulfoacetate exchange
type: Reaction

589514
units: 456180
value: 1000.0
type: LocalParameter

482774
stoichiometry: 1.0
species: 574261
type: SpeciesReference

594264
units: 456180
value: 0.0
type: LocalParameter

558077
stoichiometry: 1.0
species: 575824
type: SpeciesReference

594698
units: 456180
value: 0.0
type: LocalParameter

590718
units: 456180
value: 0.0
type: LocalParameter

595472
units: 456180
value: 0.0
type: LocalParameter

586598
units: 456180
value: 1000.0
type: LocalParameter

585611
units: 456180
value: 0.0
type: LocalParameter

556921
stoichiometry: 1.0
species: 577980
type: SpeciesReference

575162
notes: FORMULA: C9H8O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Hydroxy-6-oxonona-2,4-diene-1,9-dioate
type: Species

578630
kinetic law: 465491
reactant: 465479
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Sucrose exchange
type: Reaction

579873
reactant: 520729
name: Fe(III)hydroxamine transport via ton system (extracellular)
type: Reaction
kinetic law: 520777
reactant: 520741
reversible: false
product: 520765
fast: false
notes: GENE_ASSOCIATION: (b0150 and (b1252 and b3005 and b3006)) SUBSYSTEM: Transport, Outer Membrane EC Number:
product: 520753

580460
reactant: 549314
reversible: false
type: Reaction
kinetic law: 549388
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
reactant: 549302
product: 549351
product: 549364
product: 549376
name: lipid A transport via ABC system (periplasm)
fast: false
reactant: 549327
product: 549339

590595
units: 456180
value: 0.0
type: LocalParameter

580462
kinetic law: 549544
reactant: 549496
type: Reaction
product: 549520
name: Lipoyl(octanoyl) transferase
reactant: 549508
reversible: false
notes: GENE_ASSOCIATION: b0630 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 549532
fast: false

465309
stoichiometry: 1.0
species: 577347
type: SpeciesReference

595471
units: 456180
value: 0.0
type: LocalParameter

586383
units: 456180
value: 1000.0
type: LocalParameter

587750
units: 456180
value: 1000.0
type: LocalParameter

516195
stoichiometry: 1.0
species: 575120
type: SpeciesReference

526394
stoichiometry: 1.0
species: 573886
type: SpeciesReference

578039
notes: FORMULA: C33H66N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: phosphatidylethanolamine (ditetradecanoyl, n-C14:0)
type: Species

619521
stoichiometry: 1.0
species: 578015
type: SpeciesReference

596427
units: 456180
value: 0.0
type: LocalParameter

538707
stoichiometry: 1.0
species: 577860
type: SpeciesReference

621173
stoichiometry: 1.0
species: 578076
type: SpeciesReference

580461
reactant: 549400
notes: GENE_ASSOCIATION: (b3200 and b3201 and b3199 and b4261 and b4262) SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
product: 549460
name: lipid A transport via ABC system (periplasm to extracellular)
fast: false
product: 549436
product: 549472
reversible: false
product: 549448
reactant: 549424
kinetic law: 549484
reactant: 549412
type: Reaction

590716
units: 456180
value: 0.0
type: LocalParameter

590594
units: 456180
value: 1000.0
type: LocalParameter

580463
reversible: false
reactant: 549604
product: 549640
product: 549677
reactant: 549568
notes: GENE_ASSOCIATION: b0628 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
kinetic law: 549689
fast: false
reactant: 549592
reactant: 549556
product: 549616
reactant: 549580
product: 549665
name: Lipoate synthase
product: 549628
product: 549653
type: Reaction

595474
units: 456180
value: 0.0
type: LocalParameter

469446
stoichiometry: 1.0
species: 575522
type: SpeciesReference

586386
units: 456180
value: 0.0
type: LocalParameter

589518
units: 456180
value: 0.0
type: LocalParameter

585613
units: 456180
value: 0.0
type: LocalParameter

596424
units: 456180
value: 0.0
type: LocalParameter

579875
reactant: 520789
type: Reaction
fast: false
name: Fe(III) reduction
product: 520813
reversible: false
kinetic law: 520850
product: 520825
notes: GENE_ASSOCIATION: b3844 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
reactant: 520801
product: 520838

590715
units: 456180
value: 1000.0
type: LocalParameter

580464
type: Reaction
product: 549738
reactant: 549701
product: 549726
kinetic law: 549750
reactant: 549713
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: false
fast: false
name: Lipoate transport via proton symport (periplasm)

591960
units: 456180
value: -1000.0
type: LocalParameter

525594
stoichiometry: 1.0
species: 578076
type: SpeciesReference

460128
stoichiometry: 1.0
species: 576673
type: SpeciesReference

563933
stoichiometry: 1.0
species: 574247
type: SpeciesReference

586599
units: 456180
value: 0.0
type: LocalParameter

505686
stoichiometry: 1.0
species: 575663
type: SpeciesReference

578037
notes: FORMULA: C29H58N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: phosphatidylethanolamine (didodecanoyl, n-C12:0)
type: Species

586385
units: 456180
value: 0.0
type: LocalParameter

594260
units: 456180
value: 1000.0
type: LocalParameter

606189
stoichiometry: 1.0
species: 574603
type: SpeciesReference

575165
notes: FORMULA: C9H6O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-hydroxy-6-ketononatrienedioate
type: Species

596425
units: 456180
value: 1000.0
type: LocalParameter

585614
units: 456180
value: 0.0
type: LocalParameter

590592
units: 456180
value: 0.0
type: LocalParameter

501780
stoichiometry: 1.0
species: 577740
type: SpeciesReference

550256
stoichiometry: 1.0
species: 577875
type: SpeciesReference

473096
stoichiometry: 1.0
species: 574159
type: SpeciesReference

579876
reactant: 520862
product: 520923
reactant: 520875
fast: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
product: 520899
reactant: 520887
kinetic law: 520947
product: 520911
reversible: false
product: 520935
type: Reaction
name: iron (III) transport via ABC system (periplasm to cytoplasm)

610617
stoichiometry: 1.0
species: 576019
type: SpeciesReference

489701
stoichiometry: 1.0
species: 574239
type: SpeciesReference

543361
stoichiometry: 1.0
species: 575252
type: SpeciesReference

585622
units: 456180
value: 0.0
type: LocalParameter

596417
units: 456180
value: 0.0
type: LocalParameter

582661
units: 456180
value: 1000.0
type: LocalParameter

574925
notes: FORMULA: C2H4O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Glycolaldehyde
type: Species

618384
stoichiometry: 1.0
species: 578145
type: SpeciesReference

590723
units: 456180
value: 0.0
type: LocalParameter

578616
kinetic law: 465273
reactant: 465261
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-Serine exchange
type: Reaction

531767
stoichiometry: 1.0
species: 574982
type: SpeciesReference

578021
notes: FORMULA: C8H15O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: octanoate (n-C8:0)
type: Species

582662
units: 456180
value: 0.0
type: LocalParameter

473732
stoichiometry: 1.0
species: 577628
type: SpeciesReference

550695
stoichiometry: 1.0
species: 577830
type: SpeciesReference

586595
units: 456180
value: 0.0
type: LocalParameter

581936
units: 456180
value: 0.0
type: LocalParameter

500398
stoichiometry: 1.0
species: 577887
type: SpeciesReference

591119
units: 456180
value: 0.0
type: LocalParameter

574712
notes: FORMULA: C10H13N2O14P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dTTP
type: Species

596416
units: 456180
value: 0.0
type: LocalParameter

582660
units: 456180
value: 0.0
type: LocalParameter

511001
stoichiometry: 1.0
species: 575564
type: SpeciesReference

574926
stoichiometry: 1.0
species: 577263
type: SpeciesReference

585621
units: 456180
value: 1000.0
type: LocalParameter

554173
stoichiometry: 1.0
species: 575090
type: SpeciesReference

622117
stoichiometry: 1.0
species: 576397
type: SpeciesReference

613916
stoichiometry: 3.0
species: 575099
type: SpeciesReference

590724
units: 456180
value: -1000.0
type: LocalParameter

578022
notes: FORMULA: C5H13N2O2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Ornithine
type: Species

586596
units: 456180
value: -1000.0
type: LocalParameter

581937
units: 456180
value: 0.0
type: LocalParameter

474752
stoichiometry: 1.0
species: 575570
type: SpeciesReference

519882
stoichiometry: 2.0
species: 574466
type: SpeciesReference

527532
stoichiometry: 1.0
species: 577841
type: SpeciesReference

561184
stoichiometry: 1.0
species: 575099
type: SpeciesReference

512683
stoichiometry: 1.0
species: 575672
type: SpeciesReference

595909
stoichiometry: 1.0
species: 577604
type: SpeciesReference

592403
units: 456180
value: 0.0
type: LocalParameter

578618
kinetic law: 465297
reactant: 465285
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: L-Serine exchange
type: Reaction

581934
units: 456180
value: 1000.0
type: LocalParameter

596418
units: 456180
value: 0.0
type: LocalParameter

611098
stoichiometry: 1.0
species: 577344
type: SpeciesReference

481660
stoichiometry: 1.0
species: 577890
type: SpeciesReference

524526
stoichiometry: 1.0
species: 574760
type: SpeciesReference

591117
units: 456180
value: 1000.0
type: LocalParameter

585409
units: 456180
value: 0.0
type: LocalParameter

478795
stoichiometry: 1.0
species: 575785
type: SpeciesReference

592402
units: 456180
value: 1000.0
type: LocalParameter

590726
units: 456180
value: 1000.0
type: LocalParameter

578619
kinetic law: 465321
reactant: 465309
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Shikimate exchange
type: Reaction

488201
stoichiometry: 1.0
species: 575525
type: SpeciesReference

581935
units: 456180
value: 0.0
type: LocalParameter

586594
units: 456180
value: 0.0
type: LocalParameter

578024
notes: FORMULA: C5H3N2O4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Orotate
type: Species

512969
stoichiometry: 1.0
species: 575525
type: SpeciesReference

613423
stoichiometry: 1.0
species: 578124
type: SpeciesReference

608620
stoichiometry: 1.0
species: 573892
type: SpeciesReference

591116
units: 456180
value: 0.0
type: LocalParameter

574715
notes: FORMULA: C9H11N2O11P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dUDP
type: Species

589510
units: 456180
value: 0.0
type: LocalParameter

585408
units: 456180
value: 0.0
type: LocalParameter

597549
stoichiometry: 1.0
species: 577890
type: SpeciesReference

582666
units: 456180
value: 0.0
type: LocalParameter

586591
units: 456180
value: -1000.0
type: LocalParameter

590577
units: 456180
value: 1000.0
type: LocalParameter

482062
stoichiometry: 1.0
species: 577659
type: SpeciesReference

530396
stoichiometry: 1.0
species: 575926
type: SpeciesReference

499540
stoichiometry: 1.0
species: 576721
type: SpeciesReference

578612
kinetic law: 465201
reactant: 465189
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: L-Rhamnose exchange
type: Reaction

599170
stoichiometry: 1.0
species: 575393
type: SpeciesReference

591115
units: 456180
value: 0.0
type: LocalParameter

568317
stoichiometry: 1.0
species: 575099
type: SpeciesReference

557872
stoichiometry: 1.0
species: 577887
type: SpeciesReference

582665
units: 456180
value: 1000.0
type: LocalParameter

595490
units: 456180
value: 1000.0
type: LocalParameter

590720
units: 456180
value: 1000.0
type: LocalParameter

586592
units: 456180
value: 1000.0
type: LocalParameter

560919
stoichiometry: 1.0
species: 577887
type: SpeciesReference

511724
stoichiometry: 1.0
species: 575090
type: SpeciesReference

578613
kinetic law: 465225
reactant: 465213
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-Sorbitol exchange
type: Reaction

589512
units: 456180
value: 0.0
type: LocalParameter

585406
units: 456180
value: 1000.0
type: LocalParameter

566855
stoichiometry: 1.0
species: 578004
type: SpeciesReference

586367
units: 456180
value: 1000.0
type: LocalParameter

563705
stoichiometry: 1.0
species: 575522
type: SpeciesReference

590579
units: 456180
value: 0.0
type: LocalParameter

581938
units: 456180
value: 1000.0
type: LocalParameter

582664
units: 456180
value: 0.0
type: LocalParameter

579859
reversible: false
reactant: 519942
fast: false
type: Reaction
product: 519978
reactant: 519954
kinetic law: 519990
notes: GENE_ASSOCIATION: (b4291 and (b1252 and b3005 and b3006)) SUBSYSTEM: Transport, Outer Membrane EC Number:
name: ferric-dicitrate transport via ton system (extracellular)
product: 519966

545523
stoichiometry: 1.0
species: 575090
type: SpeciesReference

457947
stoichiometry: 0.026166
species: 574712
type: SpeciesReference

591113
units: 456180
value: 0.0
type: LocalParameter

622810
stoichiometry: 2.0
species: 574255
type: SpeciesReference

585405
units: 456180
value: 0.0
type: LocalParameter

574928
notes: FORMULA: C10H12N5O11P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: GDP
type: Species

483706
stoichiometry: 1.0
species: 575099
type: SpeciesReference

456997
stoichiometry: 7.0E-6
species: 575471
type: SpeciesReference

557139
stoichiometry: 1.0
species: 577977
type: SpeciesReference

586368
units: 456180
value: 0.0
type: LocalParameter

475707
stoichiometry: 1.0
species: 574478
type: SpeciesReference

581939
units: 456180
value: 0.0
type: LocalParameter

582663
units: 456180
value: 0.0
type: LocalParameter

590722
units: 456180
value: 0.0
type: LocalParameter

586590
units: 456180
value: 0.0
type: LocalParameter

583350
units: 456180
value: 1000.0
type: LocalParameter

578615
kinetic law: 465249
reactant: 465237
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Selenate exchange
type: Reaction

595903
units: 456180
value: 1000.0
type: LocalParameter

580674
kinetic law: 559515
product: 559503
reactant: 559491
reactant: 559479
notes: GENE_ASSOCIATION: b0118 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 4.2.1.99
fast: false
reversible: true
name: 2-methylisocitrate dehydratase
type: Reaction

575375
notes: FORMULA: C36H62O31 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Maltohexaose
type: Species

579409
notes: GENE_ASSOCIATION: (b0781 and b0783) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
reversible: false
kinetic law: 499734
reactant: 499686
name: cyclic pyranopterin monophosphate synthase
product: 499722
fast: false
type: Reaction
reactant: 499698
product: 499710

587967
units: 456180
value: 0.0
type: LocalParameter

591112
units: 456180
value: 1000.0
type: LocalParameter

470065
stoichiometry: 1.0
species: 575099
type: SpeciesReference

573766
notes: FORMULA: C35H68O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,2-Diacyl-sn-glycerol (dihexadecanoyl, n-C16:0)
type: Species

492374
stoichiometry: 3.0
species: 575090
type: SpeciesReference

595904
units: 456180
value: 0.0
type: LocalParameter

580673
notes: GENE_ASSOCIATION: b2533 SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 3.1.3.25
reactant: 559430
kinetic law: 559467
product: 559455
product: 559443
reversible: false
fast: false
type: Reaction
reactant: 559418
name: myo-inositol 1-phosphatase

583352
units: 456180
value: 0.0
type: LocalParameter

527326
stoichiometry: 1.0
species: 574970
type: SpeciesReference

487066
stoichiometry: 1.0
species: 575030
type: SpeciesReference

582669
units: 456180
value: 1000.0
type: LocalParameter

575374
stoichiometry: 1.0
species: 578025
type: SpeciesReference

587966
units: 456180
value: 0.0
type: LocalParameter

580672
kinetic law: 559406
product: 559394
product: 559382
reactant: 559370
notes: GENE_ASSOCIATION: b0963 SUBSYSTEM: Methylglyoxal Metabolism EC Number: 4.2.3.3
fast: false
reversible: false
name: methylglyoxal synthase
type: Reaction

480933
stoichiometry: 1.0
species: 575090
type: SpeciesReference

565481
stoichiometry: 1.0
species: 575537
type: SpeciesReference

583353
units: 456180
value: 0.0
type: LocalParameter

582668
units: 456180
value: 0.0
type: LocalParameter

595901
units: 456180
value: 0.0
type: LocalParameter

579407
name: 6-carboxy-5,6,7,8-tetrahydropterin synthase
product: 499638
product: 499662
notes: GENE_ASSOCIATION: b2765 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 499626
kinetic law: 499674
reactant: 499614
reactant: 499601
fast: false
product: 499650
type: Reaction
reversible: false

587969
units: 456180
value: 1000.0
type: LocalParameter

609687
stoichiometry: 1.0
species: 575992
type: SpeciesReference

599813
stoichiometry: 1.0
species: 575824
type: SpeciesReference

573768
notes: FORMULA: C35H64O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,2-Diacyl-sn-glycerol (dihexadec-9-enoyl, n-C16:1)
type: Species

591110
units: 456180
value: 0.0
type: LocalParameter

464453
stoichiometry: 1.0
species: 577242
type: SpeciesReference

583354
units: 456180
value: 0.0
type: LocalParameter

503493
stoichiometry: 1.0
species: 575099
type: SpeciesReference

580671
reactant: 559285
product: 559321
kinetic law: 559358
product: 559309
reversible: false
product: 559345
product: 559333
reactant: 559273
fast: false
name: Magnesium (Mg+2) ABC transporter (ubtake, periplasm)
notes: GENE_ASSOCIATION: b4242 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
type: Reaction
reactant: 559297

579405
kinetic law: 499528
product: 499516
reactant: 499504
reactant: 499492
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
reversible: false
name: coprogen Fe-loading reaction (spontaneaous)
type: Reaction

582667
units: 456180
value: 0.0
type: LocalParameter

488431
stoichiometry: 2.0
species: 574345
type: SpeciesReference

507528
stoichiometry: 1.0
species: 575165
type: SpeciesReference

472116
stoichiometry: 1.0
species: 574155
type: SpeciesReference

580449
notes: GENE_ASSOCIATION: b0401 SUBSYSTEM: Transport, Inner Membrane EC Number:
kinetic law: 548855
product: 548843
type: Reaction
name: L-leucine reversible transport via proton symport (periplasm)
reactant: 548807
fast: false
reactant: 548819
reversible: true
product: 548831

485387
stoichiometry: 1.0
species: 575099
type: SpeciesReference

495725
stoichiometry: 3.0
species: 575090
type: SpeciesReference

575372
notes: FORMULA: C42H72O36 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Maltoheptaose
type: Species

579406
reactant: 499540
notes: GENE_ASSOCIATION: (b1102 and (b1252 and b3005 and b3006)) SUBSYSTEM: Transport, Outer Membrane EC Number:
type: Reaction
kinetic law: 499589
fast: false
reactant: 499552
name: Coprogen transport via ton system (extracellular)
product: 499564
reversible: false
product: 499576

580050
product: 530226
kinetic law: 530250
type: Reaction
name: guanylate kinase (GMP:ATP)
fast: false
reactant: 530214
reversible: true
product: 530238
notes: GENE_ASSOCIATION: b3648 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 2.7.4.8
reactant: 530202

574718
notes: FORMULA: C9H11N2O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dUMP
type: Species

580670
kinetic law: 559261
product: 559249
reactant: 559237
notes: GENE_ASSOCIATION: b3816 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
reversible: false
name: magnesium (+2) transport in via diffusion
type: Reaction

583355
stoichiometry: 1.0
species: 574373
type: SpeciesReference

587962
units: 456180
value: 0.0
type: LocalParameter

593016
units: 456180
value: 1000.0
type: LocalParameter

609261
stoichiometry: 1.0
species: 575986
type: SpeciesReference

522916
stoichiometry: 2.0
species: 575090
type: SpeciesReference

581932
units: 456180
value: 0.0
type: LocalParameter

595907
units: 456180
value: 0.0
type: LocalParameter

583356
units: 456180
value: 1000.0
type: LocalParameter

580053
name: D-glucose O-acetyltransferase
kinetic law: 530347
type: Reaction
fast: false
reactant: 530311
reversible: true
product: 530323
reactant: 530299
product: 530335
notes: GENE_ASSOCIATION: b0459 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 2.3.1.79

520497
stoichiometry: 1.0
species: 577808
type: SpeciesReference

547334
stoichiometry: 1.0
species: 575090
type: SpeciesReference

587961
units: 456180
value: 0.0
type: LocalParameter

593017
units: 456180
value: 0.0
type: LocalParameter

581933
units: 456180
value: 0.0
type: LocalParameter

579403
kinetic law: 499480
notes: GENE_ASSOCIATION: (b0153 and b0151 and b0152) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 499406
reversible: false
product: 499468
reactant: 499394
product: 499443
name: coprogen transport via ABC system (periplasm)
product: 499431
type: Reaction
fast: false
reactant: 499419
product: 499455

580677
reversible: false
name: Minocycline transport via TolC system
reactant: 559563
type: Reaction
reactant: 559575
product: 559600
product: 559587
notes: GENE_ASSOCIATION: ((b0463 and b0462 and b3035) or (b0463 and b2470 and b3035)) SUBSYSTEM: Transport, Outer Membrane EC Number:
fast: false
kinetic law: 559612

551299
stoichiometry: 1.0
species: 577887
type: SpeciesReference

582111
units: 456180
value: 1000.0
type: LocalParameter

595908
units: 456180
value: 1000.0
type: LocalParameter

601142
stoichiometry: 1.0
species: 575558
type: SpeciesReference

583357
units: 456180
value: 0.0
type: LocalParameter

574922
notes: FORMULA: C7H15NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: gamma-butyrobetaine
type: Species

580052
kinetic law: 530287
product: 530274
reactant: 530262
notes: GENE_ASSOCIATION: b3432 SUBSYSTEM: Glycolysis/Gluconeogenesis EC Number: 2.4.1.18
fast: false
reversible: false
name: 1,4-alpha-glucan branching enzyme (glycogen -> bglycogen)
type: Reaction

582112
units: 456180
value: 0.0
type: LocalParameter

573769
stoichiometry: 1.0
species: 574239
type: SpeciesReference

575378
notes: FORMULA: C30H52O26 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Maltopentaose
type: Species

579402
type: Reaction
name: coprogen unloaded secretion
reactant: 499346
kinetic law: 499382
reversible: false
product: 499370
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
product: 499358
reactant: 499334

525156
stoichiometry: 1.0
species: 577826
type: SpeciesReference

580056
kinetic law: 530528
product: 530516
reactant: 530504
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-gluconate transport via diffusion (extracellular to periplasm)
type: Reaction

580676
kinetic law: 559551
product: 559539
reactant: 559527
notes: GENE_ASSOCIATION: (b1377 or b2215 or b0929 or b0241) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: Minocycline transport via diffusion (extracellular to periplasm)
type: Reaction

581930
units: 456180
value: 1000.0
type: LocalParameter

481893
stoichiometry: 1.0
species: 574243
type: SpeciesReference

587965
units: 456180
value: 0.0
type: LocalParameter

507115
stoichiometry: 1.0
species: 575920
type: SpeciesReference

538221
stoichiometry: 1.0
species: 575534
type: SpeciesReference

518203
stoichiometry: 1.0
species: 575090
type: SpeciesReference

506850
stoichiometry: 1.0
species: 577887
type: SpeciesReference

458789
stoichiometry: 1.0
species: 576508
type: SpeciesReference

579401
product: 499298
reactant: 499274
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
name: coprogen unloaded secretion (extracellular)
fast: false
reversible: false
product: 499310
reactant: 499286
type: Reaction
kinetic law: 499322

587963
units: 456180
value: 1000.0
type: LocalParameter

527110
stoichiometry: 1.0
species: 575528
type: SpeciesReference

580055
product: 530480
kinetic law: 530492
notes: GENE_ASSOCIATION: (b4321 or b4476 or b3415 or b4265) SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: true
fast: false
reactant: 530444
name: D-gluconate transport via proton symport, reversible (periplasm)
type: Reaction
product: 530468
reactant: 530456

595906
units: 456180
value: 0.0
type: LocalParameter

581931
units: 456180
value: 0.0
type: LocalParameter

583359
units: 456180
value: 0.0
type: LocalParameter

580054
product: 530408
reactant: 530359
name: Glucose dehydrogenase (ubiquinone-8 as acceptor) (periplasm)
type: Reaction
kinetic law: 530432
product: 530420
reversible: false
reactant: 530371
fast: false
reactant: 530384
product: 530396
notes: GENE_ASSOCIATION: (b0124 or b0837) SUBSYSTEM: Oxidative Phosphorylation EC Number:

536243
stoichiometry: 1.0
species: 577875
type: SpeciesReference

587748
units: 456180
value: 0.0
type: LocalParameter

593012
units: 456180
value: 0.0
type: LocalParameter

491829
stoichiometry: 1.0
species: 574363
type: SpeciesReference

575156
notes: FORMULA: C6H12N3O CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Histidinol
type: Species

582116
units: 456180
value: 1000.0
type: LocalParameter

519434
stoichiometry: 1.0
species: 574826
type: SpeciesReference

586370
units: 456180
value: 0.0
type: LocalParameter

580455
product: 549158
product: 549170
reversible: false
reactant: 549134
notes: GENE_ASSOCIATION: b0622 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
fast: false
type: Reaction
reactant: 549122
kinetic law: 549182
reactant: 549146
name: Lipid A:hexadecanoate transferase (n-C16:0) (extracellular membrane)

591959
units: 456180
value: 0.0
type: LocalParameter

505481
stoichiometry: 1.0
species: 574441
type: SpeciesReference

593013
units: 456180
value: 0.0
type: LocalParameter

559721
stoichiometry: 1.0
species: 577890
type: SpeciesReference

593011
units: 456180
value: 0.0
type: LocalParameter

587749
units: 456180
value: -1000.0
type: LocalParameter

602942
stoichiometry: 1.0
species: 574476
type: SpeciesReference

520644
stoichiometry: 1.0
species: 575090
type: SpeciesReference

579860
kinetic law: 520038
product: 520026
product: 520014
reactant: 520002
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
reversible: false
name: release of Fe(III) from ferric 2,3-dihydroxybenzoylserine
type: Reaction

553942
stoichiometry: 1.0
species: 574295
type: SpeciesReference

582117
units: 456180
value: 0.0
type: LocalParameter

506146
stoichiometry: 1.0
species: 575534
type: SpeciesReference

503276
stoichiometry: 1.0
species: 575099
type: SpeciesReference

580058
kinetic law: 530578
product: 530565
reactant: 530553
reactant: 530541
notes: GENE_ASSOCIATION: (b3428 or b3417) SUBSYSTEM: Glycolysis/Gluconeogenesis EC Number: 2.4.1.1
fast: false
reversible: false
name: glycogen phosphorylase
type: Reaction

474327
stoichiometry: 1.0
species: 575132
type: SpeciesReference

565261
stoichiometry: 1.0
species: 577997
type: SpeciesReference

487285
stoichiometry: 1.0
species: 575117
type: SpeciesReference

458325
stoichiometry: 2.23E-4
species: 576028
type: SpeciesReference

582114
units: 456180
value: 0.0
type: LocalParameter

595489
units: 456180
value: 0.0
type: LocalParameter

571462
stoichiometry: 1.0
species: 574841
type: SpeciesReference

580059
kinetic law: 530631
product: 530618
reactant: 530604
reactant: 530591
notes: GENE_ASSOCIATION: (b3417 or b3428) SUBSYSTEM: Glycolysis/Gluconeogenesis EC Number: 2.4.1.1
fast: false
reversible: false
name: glycogen phosphorylase
type: Reaction

579279
name: Acetyl-CoA:butyrate-CoA transferase
reactant: 493332
product: 493368
product: 493356
reversible: false
notes: GENE_ASSOCIATION: (b2221 and b2222) SUBSYSTEM: Alternate Carbon Metabolism EC Number: 2.8.3.8
kinetic law: 493380
fast: false
type: Reaction
reactant: 493344

580667
product: 559165
type: Reaction
reactant: 559141
kinetic law: 559189
fast: false
name: magnesium (Mg+2) transport in/out via proton antiport (periplasm)
reactant: 559153
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
product: 559177
reversible: true

572185
stoichiometry: 2.0
species: 574239
type: SpeciesReference

591957
units: 456180
value: 0.0
type: LocalParameter

575369
notes: FORMULA: C12H21O14P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Maltose 6'-phosphate
type: Species

614112
stoichiometry: 1.0
species: 575519
type: SpeciesReference

594258
units: 456180
value: 0.0
type: LocalParameter

532434
stoichiometry: 1.0
species: 575099
type: SpeciesReference

586000
stoichiometry: 1.0
species: 574068
type: SpeciesReference

492594
stoichiometry: 1.0
species: 574379
type: SpeciesReference

595488
units: 456180
value: 0.0
type: LocalParameter

582115
units: 456180
value: 0.0
type: LocalParameter

468852
stoichiometry: 1.0
species: 574578
type: SpeciesReference

507959
stoichiometry: 1.0
species: 575090
type: SpeciesReference

489204
stoichiometry: 1.0
species: 577685
type: SpeciesReference

580454
reactant: 549061
kinetic law: 549110
notes: GENE_ASSOCIATION: b0622 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
product: 549086
reactant: 549074
fast: false
name: core oligosaccharide lipid A:hexadecanoate transferase (n-C16:0) (extracellular membrane)
reactant: 549049
type: Reaction
reversible: false
product: 549098

604716
stoichiometry: 1.0
species: 575087
type: SpeciesReference

581009
kinetic law: 574758
type: Reaction
fast: false
reversible: false
reactant: 574683
product: 574734
product: 574696
reactant: 574617
product: 574746
product: 574722
name: phosphatidate transport via ABC system (n-C18:0, periplasm)
reactant: 574657
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:

502816
stoichiometry: 1.0
species: 574532
type: SpeciesReference

580668
kinetic law: 559225
product: 559213
reactant: 559201
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: magnesium (Mg+2) transport via diffusion (extracellular to periplasm)
type: Reaction

545982
stoichiometry: 1.0
species: 573959
type: SpeciesReference

594256
units: 456180
value: 0.0
type: LocalParameter

460901
stoichiometry: 1.0
species: 576769
type: SpeciesReference

595912
units: 456180
value: 0.0
type: LocalParameter

587743
units: 456180
value: 0.0
type: LocalParameter

490937
stoichiometry: 1.0
species: 574416
type: SpeciesReference

573760
notes: FORMULA: C27H52O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,2-Diacyl-sn-glycerol (didodecanoyl, n-C12:0)
type: Species

579277
kinetic law: 493210
product: 493198
reactant: 493186
notes: GENE_ASSOCIATION: (b2215 or b1377 or b0241 or b0929) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: Biotin transport via diffusion (extracellular to periplasm)
type: Reaction

521020
stoichiometry: 1.0
species: 574763
type: SpeciesReference

542850
stoichiometry: 1.0
species: 574177
type: SpeciesReference

500543
stoichiometry: 1.0
species: 575090
type: SpeciesReference

596869
stoichiometry: 1.0
species: 577895
type: SpeciesReference

587745
units: 456180
value: 1000.0
type: LocalParameter

595911
units: 456180
value: 0.0
type: LocalParameter

594257
units: 456180
value: 0.0
type: LocalParameter

569191
stoichiometry: 1.0
species: 574597
type: SpeciesReference

591956
units: 456180
value: 1000.0
type: LocalParameter

579278
product: 493258
product: 493283
fast: false
name: Biotin synthase
reactant: 493246
product: 493307
type: Reaction
product: 493295
reactant: 493222
reactant: 493234
reversible: false
product: 493270
kinetic law: 493319
notes: GENE_ASSOCIATION: b0775 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 2.8.1.6

582118
units: 456180
value: 0.0
type: LocalParameter

536025
stoichiometry: 1.0
species: 575528
type: SpeciesReference

594253
units: 456180
value: 0.0
type: LocalParameter

470627
stoichiometry: 1.0
species: 575558
type: SpeciesReference

587746
units: 456180
value: 0.0
type: LocalParameter

554807
stoichiometry: 1.0
species: 575354
type: SpeciesReference

547114
stoichiometry: 1.0
species: 575090
type: SpeciesReference

579275
reactant: 493125
type: Reaction
reactant: 493137
product: 493161
name: Biotin transport via proton symport (periplasm)
fast: false
product: 493149
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: false
kinetic law: 493174

595910
units: 456180
value: 0.0
type: LocalParameter

605777
stoichiometry: 1.0
species: 576421
type: SpeciesReference

594099
units: 456180
value: 0.0
type: LocalParameter

591953
units: 456180
value: 0.0
type: LocalParameter

580457
kinetic law: 549230
product: 549218
product: 549206
reactant: 549194
notes: GENE_ASSOCIATION: b4386 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
fast: false
reversible: false
name: Lipoyl-adenylate protein ligase
type: Reaction

573762
notes: FORMULA: C31H60O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,2-Diacyl-sn-glycerol (ditetradecanoyl, n-C14:0)
type: Species

607880
stoichiometry: 1.0
species: 574565
type: SpeciesReference

573764
notes: FORMULA: C31H56O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,2-Diacyl-sn-glycerol (ditetradec-7-enoyl, n-C14:1)
type: Species

582119
units: 456180
value: 0.0
type: LocalParameter

594254
units: 456180
value: 1000.0
type: LocalParameter

575159
notes: FORMULA: C6H8N3OR CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Histidyl-tRNA(His)
type: Species

474107
stoichiometry: 1.0
species: 574155
type: SpeciesReference

580458
kinetic law: 549290
product: 549266
product: 549278
reversible: false
notes: GENE_ASSOCIATION: b4386 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
type: Reaction
reactant: 549254
reactant: 549242
fast: false
name: Lipoate-ATP adenylate transferase

521747
stoichiometry: 2.0
species: 574802
type: SpeciesReference

528923
stoichiometry: 1.0
species: 577850
type: SpeciesReference

457558
stoichiometry: 0.024732
species: 578043
type: SpeciesReference

591951
units: 456180
value: 0.0
type: LocalParameter

595482
units: 456180
value: 0.0
type: LocalParameter

590586
units: 456180
value: 0.0
type: LocalParameter

579868
product: 520485
name: Fe(III)hydroxamate unloaded secretion
kinetic law: 520510
reactant: 520473
reversible: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
reactant: 520461
product: 520497
type: Reaction

586378
units: 456180
value: 1000.0
type: LocalParameter

579273
product: 493016
reactant: 492980
reactant: 492956
kinetic law: 493028
fast: false
reversible: false
reactant: 492968
name: Biotin sulfoxide reductase
product: 493004
product: 492992
notes: GENE_ASSOCIATION: b3551 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
type: Reaction

581004
reversible: false
reactant: 574023
kinetic law: 574083
product: 574071
name: phosphatidate transport via ABC system (n-C14:1, periplasm)
reactant: 573939
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 574011
product: 574035
fast: false
product: 574059
product: 574047
type: Reaction

534631
stoichiometry: 1.0
species: 575926
type: SpeciesReference

497935
stoichiometry: 2.0
species: 578055
type: SpeciesReference

472829
stoichiometry: 1.0
species: 574401
type: SpeciesReference

481440
stoichiometry: 1.0
species: 575090
type: SpeciesReference

589501
units: 456180
value: 0.0
type: LocalParameter

585629
units: 456180
value: 0.0
type: LocalParameter

523402
stoichiometry: 1.0
species: 575429
type: SpeciesReference

508345
stoichiometry: 1.0
species: 575624
type: SpeciesReference

579867
product: 520425
name: Fe(III)hydroxamate reductase
kinetic law: 520449
reactant: 520377
type: Reaction
reactant: 520389
product: 520413
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
product: 520437
product: 520401
reversible: false

478579
stoichiometry: 1.0
species: 574221
type: SpeciesReference

591952
units: 456180
value: 0.0
type: LocalParameter

595481
units: 456180
value: 0.0
type: LocalParameter

579869
product: 520546
reactant: 520534
kinetic law: 520570
name: Fe(III)hydroxamate unloaded secretion (extracellular)
reversible: false
type: Reaction
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
reactant: 520522
product: 520558

557428
stoichiometry: 1.0
species: 575926
type: SpeciesReference

551070
stoichiometry: 1.0
species: 577832
type: SpeciesReference

474533
stoichiometry: 1.0
species: 574155
type: SpeciesReference

578029
stoichiometry: 1.0
species: 575090
type: SpeciesReference

579274
product: 493076
reactant: 493064
kinetic law: 493113
notes: GENE_ASSOCIATION: b3551 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
name: Biotin sulfoxide reductase
reactant: 493040
type: Reaction
product: 493100
fast: false
reversible: false
product: 493088
reactant: 493052

581003
product: 573901
reactant: 573853
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
type: Reaction
product: 573889
fast: false
product: 573877
reactant: 573829
reactant: 573841
kinetic law: 573927
name: phosphatidate transport via ABC system (n-C14:0, periplasm)
reversible: false
product: 573865

589502
units: 456180
value: -1000.0
type: LocalParameter

482786
stoichiometry: 1.0
species: 574373
type: SpeciesReference

594252
units: 456180
value: 0.0
type: LocalParameter

585404
units: 456180
value: 0.0
type: LocalParameter

479941
stoichiometry: 1.0
species: 574295
type: SpeciesReference

600188
stoichiometry: 2.0
species: 575099
type: SpeciesReference

552783
stoichiometry: 1.0
species: 574578
type: SpeciesReference

623887
stoichiometry: 1.0
species: 574024
type: SpeciesReference

590588
units: 456180
value: 1000.0
type: LocalParameter

538997
stoichiometry: 1.0
species: 577889
type: SpeciesReference

579271
product: 492932
fast: false
reactant: 492908
type: Reaction
reactant: 492896
notes: GENE_ASSOCIATION: b4214 SUBSYSTEM: Cysteine Metabolism EC Number: 3.1.3.7
kinetic law: 492944
product: 492920
reversible: false
name: 3',5'-bisphosphate nucleotidase

586376
units: 456180
value: 0.0
type: LocalParameter

587741
units: 456180
value: 0.0
type: LocalParameter

495057
stoichiometry: 1.0
species: 577701
type: SpeciesReference

585401
units: 456180
value: 1000.0
type: LocalParameter

535879
stoichiometry: 1.0
species: 574476
type: SpeciesReference

553737
stoichiometry: 1.0
species: 575090
type: SpeciesReference

589503
units: 456180
value: 1000.0
type: LocalParameter

556499
stoichiometry: 1.0
species: 573908
type: SpeciesReference

554393
stoichiometry: 1.0
species: 575519
type: SpeciesReference

579865
product: 520329
product: 520341
product: 520353
reactant: 520293
product: 520317
type: Reaction
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
kinetic law: 520365
fast: false
reversible: false
reactant: 520305
name: Fe(III)hydroxamate reductase

578622
kinetic law: 465369
reactant: 465357
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: sulfur dioxide exchange
type: Reaction

518856
stoichiometry: 1.0
species: 577817
type: SpeciesReference

590587
units: 456180
value: 0.0
type: LocalParameter

581001
name: phosphatidate transport via ABC system (n-C12:0, periplasm)
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 573769
reactant: 573732
product: 573793
type: Reaction
fast: false
product: 573805
product: 573781
reversible: false
kinetic law: 573817
reactant: 573756
reactant: 573744

586375
units: 456180
value: 0.0
type: LocalParameter

589505
units: 456180
value: 0.0
type: LocalParameter

596410
units: 456180
value: 0.0
type: LocalParameter

587742
units: 456180
value: 0.0
type: LocalParameter

614654
stoichiometry: 1.0
species: 576139
type: SpeciesReference

585402
units: 456180
value: 0.0
type: LocalParameter

574919
notes: FORMULA: C77H125N1O22P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: glucosyl-O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate
type: Species

585628
units: 456180
value: 0.0
type: LocalParameter

612745
stoichiometry: 1.0
species: 575099
type: SpeciesReference

594250
units: 456180
value: 0.0
type: LocalParameter

581000
product: 573696
reversible: false
kinetic law: 573720
name: pyrroline-5-carboxylate reductase
reactant: 573660
notes: GENE_ASSOCIATION: b0386 SUBSYSTEM: Arginine and Proline Metabolism EC Number: 1.5.1.2
fast: false
reactant: 573672
reactant: 573684
type: Reaction
product: 573708

565021
stoichiometry: 1.0
species: 574597
type: SpeciesReference

515637
stoichiometry: 1.0
species: 575099
type: SpeciesReference

578621
kinetic law: 465345
reactant: 465333
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: selenite exchange
type: Reaction

586374
units: 456180
value: 0.0
type: LocalParameter

586588
units: 456180
value: 0.0
type: LocalParameter

469434
stoichiometry: 1.0
species: 575090
type: SpeciesReference

589506
units: 456180
value: 0.0
type: LocalParameter

505699
stoichiometry: 1.0
species: 574443
type: SpeciesReference

515419
stoichiometry: 1.0
species: 574751
type: SpeciesReference

580451
kinetic law: 548941
product: 548929
reactant: 548917
reactant: 548904
notes: GENE_ASSOCIATION: b1651 SUBSYSTEM: Methylglyoxal Metabolism EC Number: 4.4.1.5
fast: false
reversible: false
name: lactoylglutathione lyase
type: Reaction

595486
units: 456180
value: 0.0
type: LocalParameter

579863
notes: GENE_ASSOCIATION: ((b0805 and (b1252 and b3005 and b3006)) or (b2155 and (b1252 and b3005 and b3006))) SUBSYSTEM: Transport, Outer Membrane EC Number:
product: 520184
reactant: 520160
reversible: false
product: 520172
fast: false
reactant: 520147
kinetic law: 520196
type: Reaction
name: ferric 2,3-dihydroxybenzoylserine transport via ton system (extracellular)

590581
units: 456180
value: 0.0
type: LocalParameter

580450
kinetic law: 548891
product: 548879
reactant: 548867
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-leucine transport via diffusion (extracellular to periplasm)
type: Reaction

585625
units: 456180
value: 0.0
type: LocalParameter

596412
units: 456180
value: 0.0
type: LocalParameter

581007
product: 574518
type: Reaction
product: 574566
reactant: 574386
product: 574434
reversible: false
reactant: 574398
kinetic law: 574604
reactant: 574410
fast: false
product: 574422
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
name: phosphatidate transport via ABC system (n-C16:1, periplasm)

563921
stoichiometry: 1.0
species: 575519
type: SpeciesReference

589507
units: 456180
value: 0.0
type: LocalParameter

586587
units: 456180
value: 1000.0
type: LocalParameter

578025
notes: FORMULA: C27H51O8P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1,2-didodecanoyl-sn-glycerol 3-phosphate
type: Species

579270
reactant: 492823
reversible: false
product: 492872
fast: false
product: 492860
reactant: 492847
kinetic law: 492884
reactant: 492835
type: Reaction
notes: GENE_ASSOCIATION: (b3857 or (b3857 and b3856)) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
name: bis-molybdopterin guanine dinucleotide synthase

590727
units: 456180
value: 0.0
type: LocalParameter

595485
units: 456180
value: 1000.0
type: LocalParameter

580452
reactant: 548965
product: 549013
product: 548989
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
reversible: false
product: 549001
fast: false
type: Reaction
product: 549025
kinetic law: 549037
reactant: 548977
reactant: 548953
name: lipid (cold) A transport via ABC system (periplasm)

610605
stoichiometry: 1.0
species: 575824
type: SpeciesReference

590580
units: 456180
value: 0.0
type: LocalParameter

550268
stoichiometry: 1.0
species: 577887
type: SpeciesReference

579864
kinetic law: 520281
name: Fe(III)hydroxamate reductase
product: 520269
product: 520256
product: 520232
fast: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
reactant: 520208
reactant: 520220
type: Reaction
reversible: false
product: 520244

575153
notes: FORMULA: C6H11N3O4P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Histidinol phosphate
type: Species

596413
units: 456180
value: -1000.0
type: LocalParameter

585626
units: 456180
value: 1000.0
type: LocalParameter

566639
stoichiometry: 1.0
species: 575486
type: SpeciesReference

510387
stoichiometry: 1.0
species: 573882
type: SpeciesReference

586372
units: 456180
value: 1000.0
type: LocalParameter

578028
notes: FORMULA: C31H55O8P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1,2-ditetradec-7-enoyl-sn-glycerol 3-phosphate
type: Species

581006
product: 574156
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 574095
name: phosphatidate transport via ABC system (n-C16:0, periplasm)
product: 574168
reversible: false
reactant: 574144
product: 574180
product: 574192
reactant: 574107
kinetic law: 574374
type: Reaction
fast: false

590584
units: 456180
value: 0.0
type: LocalParameter

575150
notes: FORMULA: C6H9N3O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Histidine
type: Species

579861
reversible: false
reactant: 520074
name: ferric 2,3-dihydroxybenzoylserine transport via ABC system (periplasm)
reactant: 520050
product: 520098
fast: false
product: 520086
kinetic law: 520135
reactant: 520062
product: 520122
type: Reaction
product: 520110
notes: GENE_ASSOCIATION: (b0592 and b0588 and b0590 and b0589) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:

596414
units: 456180
value: 1000.0
type: LocalParameter

591109
units: 456180
value: 0.0
type: LocalParameter

586585
units: 456180
value: -1000.0
type: LocalParameter

578027
notes: FORMULA: C31H59O8P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1,2-ditetradecanoyl-sn-glycerol 3-phosphate
type: Species

589509
units: 456180
value: 1000.0
type: LocalParameter

526382
stoichiometry: 1.0
species: 575030
type: SpeciesReference

590583
units: 456180
value: 1000.0
type: LocalParameter

531948
stoichiometry: 1.0
species: 577863
type: SpeciesReference

586371
units: 456180
value: 0.0
type: LocalParameter

590729
units: 456180
value: 0.0
type: LocalParameter

595483
units: 456180
value: 0.0
type: LocalParameter

623462
stoichiometry: 1.0
species: 574476
type: SpeciesReference

621161
stoichiometry: 1.0
species: 577887
type: SpeciesReference

600588
stoichiometry: 1.0
species: 574239
type: SpeciesReference

585624
units: 456180
value: 0.0
type: LocalParameter

516183
stoichiometry: 1.0
species: 575090
type: SpeciesReference

522478
stoichiometry: 1.0
species: 574808
type: SpeciesReference

520875
stoichiometry: 1.0
species: 575099
type: SpeciesReference

590112
units: 456180
value: 1000.0
type: LocalParameter

586317
units: 456180
value: 1000.0
type: LocalParameter

595239
units: 456180
value: 0.0
type: LocalParameter

613965
stoichiometry: 1.0
species: 574373
type: SpeciesReference

596616
units: 456180
value: 0.0
type: LocalParameter

578096
notes: FORMULA: C8H13N2O2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Pyridoxamine
type: Species

579247
product: 491709
product: 491721
notes: GENE_ASSOCIATION: (b4138 or b4123) SUBSYSTEM: Transport, Inner Membrane EC Number:
kinetic law: 491733
reversible: false
reactant: 491685
reactant: 491697
fast: false
type: Reaction
name: L-asparate transport via proton symport (3 H) (periplasm)

491661
stoichiometry: 2.0
species: 575090
type: SpeciesReference

588517
units: 456180
value: 0.0
type: LocalParameter

518215
stoichiometry: 1.0
species: 575528
type: SpeciesReference

590774
units: 456180
value: 0.0
type: LocalParameter

591723
units: 456180
value: 1000.0
type: LocalParameter

582635
units: 456180
value: 0.0
type: LocalParameter

594091
units: 456180
value: 0.0
type: LocalParameter

579021
reactant: 480534
type: Reaction
product: 480583
reactant: 480546
notes: GENE_ASSOCIATION: b1992 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
name: Adenosylcobalamin 5'-phosphate synthase
product: 480558
reversible: false
kinetic law: 480595
product: 480571
fast: false

456278
stoichiometry: 1.0
species: 574171
type: SpeciesReference

515685
stoichiometry: 2.0
species: 575785
type: SpeciesReference

586316
units: 456180
value: 0.0
type: LocalParameter

463098
stoichiometry: 1.0
species: 577074
type: SpeciesReference

622386
stoichiometry: 1.0
species: 576394
type: SpeciesReference

595238
units: 456180
value: 1000.0
type: LocalParameter

557453
stoichiometry: 1.0
species: 575354
type: SpeciesReference

508962
stoichiometry: 1.0
species: 573967
type: SpeciesReference

579248
stoichiometry: 1.0
species: 574239
type: SpeciesReference

574305
notes: FORMULA: C26H39N5O14 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,6-anhydrous-N-Acetylmuramyl-tripeptide
type: Species

590773
units: 456180
value: 0.0
type: LocalParameter

582636
units: 456180
value: 0.0
type: LocalParameter

588516
units: 456180
value: 0.0
type: LocalParameter

594092
units: 456180
value: 0.0
type: LocalParameter

579022
reactant: 480619
product: 480655
type: Reaction
reversible: false
product: 480667
notes: GENE_ASSOCIATION: (b1711 and b1709 and b0158) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 480643
kinetic law: 480691
name: Adenosylcobalamin transport via ABC system (periplasm)
reactant: 480607
fast: false
reactant: 480631
product: 480679

521286
stoichiometry: 1.0
species: 576888
type: SpeciesReference

590110
units: 456180
value: 0.0
type: LocalParameter

587998
units: 456180
value: 0.0
type: LocalParameter

586319
units: 456180
value: 0.0
type: LocalParameter

614425
stoichiometry: 1.0
species: 578129
type: SpeciesReference

542390
stoichiometry: 1.0
species: 575528
type: SpeciesReference

557678
stoichiometry: 2.0
species: 574814
type: SpeciesReference

596614
units: 456180
value: 0.0
type: LocalParameter

582637
units: 456180
value: 0.0
type: LocalParameter

578094
notes: FORMULA: C4H14N2 CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Putrescine
type: Species

581921
units: 456180
value: 0.0
type: LocalParameter

579249
reversible: false
reactant: 491745
fast: false
reactant: 491757
product: 491781
name: L-aspartate transport in via proton symport (periplasm)
notes: GENE_ASSOCIATION: b4077 SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 491769
type: Reaction
kinetic law: 491793

580089
reactant: 532057
notes: GENE_ASSOCIATION: b0242 SUBSYSTEM: Arginine and Proline Metabolism EC Number: 2.7.2.11
product: 532081
fast: false
reactant: 532045
product: 532069
kinetic law: 532093
type: Reaction
name: glutamate 5-kinase
reversible: false

579023
kinetic law: 480752
name: Adenosylcobalimin transport via ton system (extermal)
reactant: 480703
reversible: false
product: 480739
product: 480727
reactant: 480715
type: Reaction
fast: false
notes: GENE_ASSOCIATION: (b3966 and (b1252 and b3005 and b3006)) SUBSYSTEM: Transport, Outer Membrane EC Number:

594093
units: 456180
value: 0.0
type: LocalParameter

591725
units: 456180
value: 0.0
type: LocalParameter

588515
units: 456180
value: 0.0
type: LocalParameter

588513
units: 456180
value: 1000.0
type: LocalParameter

587999
units: 456180
value: 0.0
type: LocalParameter

520461
stoichiometry: 1.0
species: 574793
type: SpeciesReference

583368
units: 456180
value: 0.0
type: LocalParameter

596615
units: 456180
value: 0.0
type: LocalParameter

581920
units: 456180
value: 0.0
type: LocalParameter

582860
units: 456180
value: 0.0
type: LocalParameter

578093
notes: FORMULA: C3H6NO6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: O-Phospho-L-serine
type: Species

582638
units: 456180
value: 1000.0
type: LocalParameter

574307
notes: FORMULA: C29H44N6O15 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,6-anhydrous-N-Acetylmuramyl-tetrapeptide
type: Species

504075
stoichiometry: 1.0
species: 574540
type: SpeciesReference

590771
units: 456180
value: 0.0
type: LocalParameter

522928
stoichiometry: 2.0
species: 575546
type: SpeciesReference

591726
units: 456180
value: 0.0
type: LocalParameter

574301
notes: FORMULA: C37H57N7O20 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide
type: Species

580086
fast: false
product: 531876
product: 531912
product: 531888
kinetic law: 531924
reversible: false
type: Reaction
notes: GENE_ASSOCIATION: (b0811 and b0810 and b0809) SUBSYSTEM: Transport, Inner Membrane EC Number:
name: L-glutamine transport via ABC system (periplasm)
reactant: 531852
reactant: 531840
reactant: 531864
product: 531900

596612
units: 456180
value: 1000.0
type: LocalParameter

583367
units: 456180
value: 1000.0
type: LocalParameter

588512
units: 456180
value: 0.0
type: LocalParameter

617380
stoichiometry: 1.0
species: 577404
type: SpeciesReference

590116
units: 456180
value: 1000.0
type: LocalParameter

582631
units: 456180
value: 0.0
type: LocalParameter

591727
units: 456180
value: 0.0
type: LocalParameter

582409
units: 456180
value: 1000.0
type: LocalParameter

594095
units: 456180
value: 1000.0
type: LocalParameter

593651
units: 456180
value: 0.0
type: LocalParameter

475755
stoichiometry: 1.0
species: 574046
type: SpeciesReference

595234
units: 456180
value: 0.0
type: LocalParameter

579025
product: 480812
reversible: false
notes: GENE_ASSOCIATION: (b3397 or b3034) SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.6.1.13
kinetic law: 480824
name: ADPribose diphosphatase
fast: false
reactant: 480776
reactant: 480764
product: 480800
product: 480788
type: Reaction

590778
units: 456180
value: 0.0
type: LocalParameter

580087
kinetic law: 531961
product: 531948
reactant: 531936
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-glutamine transport via diffusion (extracellular to periplasm)
type: Reaction

543165
stoichiometry: 1.0
species: 575099
type: SpeciesReference

590115
units: 456180
value: -1000.0
type: LocalParameter

588511
units: 456180
value: 0.0
type: LocalParameter

609417
stoichiometry: 1.0
species: 576052
type: SpeciesReference

582632
units: 456180
value: 0.0
type: LocalParameter

591728
stoichiometry: 1.0
species: 574474
type: SpeciesReference

595233
units: 456180
value: 1000.0
type: LocalParameter

594096
units: 456180
value: 0.0
type: LocalParameter

580088
product: 532021
notes: GENE_ASSOCIATION: b2091 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
name: Galactitol-1-phosphate dehydrogenase
type: Reaction
reactant: 531985
product: 532009
reversible: true
kinetic law: 532033
product: 531997
fast: false
reactant: 531973

583365
units: 456180
value: 0.0
type: LocalParameter

578099
notes: FORMULA: C8H11NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Pyridoxine
type: Species

579026
type: Reaction
fast: false
name: adenine phosphoribosyltransferase
product: 480860
reactant: 480848
product: 480872
reactant: 480836
kinetic law: 480884
notes: GENE_ASSOCIATION: b0469 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 2.4.2.7
reversible: false

473528
stoichiometry: 1.0
species: 574373
type: SpeciesReference

590777
units: 456180
value: 0.0
type: LocalParameter

596610
units: 456180
value: 0.0
type: LocalParameter

512004
stoichiometry: 1.0
species: 576151
type: SpeciesReference

595237
units: 456180
value: 0.0
type: LocalParameter

466784
stoichiometry: 1.0
species: 577509
type: SpeciesReference

590114
units: 456180
value: 0.0
type: LocalParameter

456948
stoichiometry: 0.008253
species: 575432
type: SpeciesReference

501768
stoichiometry: 1.0
species: 575785
type: SpeciesReference

591729
units: 456180
value: 1000.0
type: LocalParameter

527338
stoichiometry: 1.0
species: 575785
type: SpeciesReference

597573
stoichiometry: 1.0
species: 577599
type: SpeciesReference

582633
units: 456180
value: 0.0
type: LocalParameter

487030
stoichiometry: 1.0
species: 575513
type: SpeciesReference

579027
reactant: 480896
product: 480945
product: 480933
reversible: false
product: 480921
fast: false
reactant: 480908
name: adenylyl-sulfate kinase
kinetic law: 480957
notes: GENE_ASSOCIATION: b2750 SUBSYSTEM: Cysteine Metabolism EC Number: 2.7.1.25
type: Reaction

583364
units: 456180
value: 0.0
type: LocalParameter

593653
units: 456180
value: 0.0
type: LocalParameter

580085
reactant: 531767
reactant: 531754
product: 531804
type: Reaction
product: 531816
fast: false
product: 531792
reversible: false
name: Glutaminyl-tRNA synthetase
reactant: 531779
notes: GENE_ASSOCIATION: b0680 SUBSYSTEM: tRNA Charging EC Number: 6.1.1.18
kinetic law: 531828

595236
units: 456180
value: 0.0
type: LocalParameter

596611
units: 456180
value: 0.0
type: LocalParameter

590113
units: 456180
value: 0.0
type: LocalParameter

500591
stoichiometry: 1.0
species: 577887
type: SpeciesReference

475163
stoichiometry: 1.0
species: 575519
type: SpeciesReference

590775
units: 456180
value: 1000.0
type: LocalParameter

582634
units: 456180
value: 1000.0
type: LocalParameter

594098
units: 456180
value: 0.0
type: LocalParameter

574303
notes: FORMULA: C11H16NO7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,6-anhydrous-N-Acetylmuramate
type: Species

578097
notes: FORMULA: C8H9NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Pyridoxal
type: Species

583363
units: 456180
value: 0.0
type: LocalParameter

593652
units: 456180
value: 0.0
type: LocalParameter

582865
units: 456180
value: 0.0
type: LocalParameter

595230
units: 456180
value: 0.0
type: LocalParameter

601828
stoichiometry: 1.0
species: 575785
type: SpeciesReference

593655
units: 456180
value: 1000.0
type: LocalParameter

592410
units: 456180
value: 0.0
type: LocalParameter

587991
units: 456180
value: 1000.0
type: LocalParameter

557127
stoichiometry: 1.0
species: 577890
type: SpeciesReference

579477
kinetic law: 503106
product: 503094
reactant: 503082
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-cysteine transport via diffusion (extracellular to periplasm)
type: Reaction

581927
units: 456180
value: 0.0
type: LocalParameter

590568
units: 456180
value: 0.0
type: LocalParameter

580082
product: 531620
reversible: false
reactant: 531608
kinetic law: 531644
reactant: 531584
type: Reaction
reactant: 531596
notes: GENE_ASSOCIATION: b3430 SUBSYSTEM: Glycolysis/Gluconeogenesis EC Number: 2.7.7.27
name: glucose-1-phosphate adenylyltransferase
product: 531632
fast: false

586749
units: 456180
value: 0.0
type: LocalParameter

582866
units: 456180
value: 0.0
type: LocalParameter

590353
units: 456180
value: 0.0
type: LocalParameter

592411
units: 456180
value: 0.0
type: LocalParameter

583361
units: 456180
value: 1000.0
type: LocalParameter

572100
stoichiometry: 1.0
species: 573924
type: SpeciesReference

587992
units: 456180
value: 0.0
type: LocalParameter

581235
kinetic law: 599922
reversible: false
name: inorganic triphosphatase
fast: false
product: 599898
type: Reaction
notes: GENE_ASSOCIATION: (b2502 or b2744) SUBSYSTEM: Anaplerotic Reactions EC Number: 3.6.1.1
reactant: 599861
reactant: 599873
product: 599910
product: 599886

579478
kinetic law: 503142
product: 503130
reactant: 503118
notes: GENE_ASSOCIATION: (b2578 or b1533) SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: false
name: L-cysteine export via facilitated transport
type: Reaction

581926
units: 456180
value: 1000.0
type: LocalParameter

488407
stoichiometry: 2.0
species: 575090
type: SpeciesReference

580083
kinetic law: 531742
name: glutamine synthetase
type: Reaction
reversible: false
reactant: 531668
reactant: 531656
product: 531705
product: 531718
notes: GENE_ASSOCIATION: (b3870 or b1297) SUBSYSTEM: Glutamate Metabolism EC Number: 6.3.1.2
reactant: 531680
product: 531692
product: 531730
fast: false

474376
stoichiometry: 1.0
species: 574373
type: SpeciesReference

586748
units: 456180
value: 0.0
type: LocalParameter

505445
stoichiometry: 1.0
species: 574519
type: SpeciesReference

583360
units: 456180
value: 0.0
type: LocalParameter

590352
units: 456180
value: 1000.0
type: LocalParameter

590566
units: 456180
value: 1000.0
type: LocalParameter

595232
units: 456180
value: 0.0
type: LocalParameter

582867
units: 456180
value: 1000.0
type: LocalParameter

581012
product: 574890
reactant: 574866
type: Reaction
product: 574902
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: true
name: phenylacetaldehyde reversible transport via proton symport (periplasm)
kinetic law: 574914
reactant: 574878

581929
units: 456180
value: 0.0
type: LocalParameter

581238
kinetic law: 600020
product: 600008
reactant: 599996
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: propanal transport via diffusion (extracellular to periplasm)
type: Reaction

586310
units: 456180
value: 0.0
type: LocalParameter

579479
type: Reaction
name: cytochrome oxidase bd (menaquinol-8: 2 protons) (periplasm)
reversible: false
product: 503204
fast: false
product: 503216
notes: GENE_ASSOCIATION: (b0978 and b0979) SUBSYSTEM: Oxidative Phosphorylation EC Number:
product: 503191
reactant: 503167
reactant: 503179
reactant: 503154
kinetic law: 503228

557884
stoichiometry: 1.0
species: 575090
type: SpeciesReference

580080
kinetic law: 531571
product: 531559
reactant: 531547
notes: GENE_ASSOCIATION: b3431 SUBSYSTEM: Glycolysis/Gluconeogenesis EC Number:
fast: false
reversible: false
name: glycogen debranching enzyme (bglycogen -> glycogen)
type: Reaction

593656
units: 456180
value: 0.0
type: LocalParameter

590779
units: 456180
value: 0.0
type: LocalParameter

623634
stoichiometry: 1.0
species: 577887
type: SpeciesReference

590565
units: 456180
value: 0.0
type: LocalParameter

595231
units: 456180
value: 0.0
type: LocalParameter

581237
product: 599971
name: Propionate kinase
type: Reaction
reactant: 599947
kinetic law: 599983
fast: false
product: 599959
notes: GENE_ASSOCIATION: b3115 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 2.7.2.1
reactant: 599934
reversible: true

582630
units: 456180
value: 1000.0
type: LocalParameter

581928
units: 456180
value: 0.0
type: LocalParameter

503216
stoichiometry: 2.0
species: 577887
type: SpeciesReference

484892
stoichiometry: 1.0
species: 576631
type: SpeciesReference

574727
notes: FORMULA: C5H10O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-deoxy-D-xylulose
type: Species

581010
product: 574806
reversible: false
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
type: Reaction
product: 574830
product: 574818
reactant: 574782
product: 574842
fast: false
name: phosphatidate transport via ABC system (n-C18:1, periplasm)
reactant: 574770
reactant: 574794
kinetic law: 574854

590350
units: 456180
value: -1000.0
type: LocalParameter

550498
stoichiometry: 1.0
species: 578150
type: SpeciesReference

596409
units: 456180
value: 1000.0
type: LocalParameter

481427
stoichiometry: 1.0
species: 574299
type: SpeciesReference

614858
stoichiometry: 1.0
species: 574691
type: SpeciesReference

608656
stoichiometry: 1.0
species: 576091
type: SpeciesReference

581232
notes: GENE_ASSOCIATION: b0871 SUBSYSTEM: Oxidative Phosphorylation EC Number: 1.2.2.2
reactant: 599741
kinetic law: 599789
type: Reaction
reactant: 599728
reactant: 599715
product: 599753
name: pyruvate oxidase
product: 599777
product: 599765
reversible: false
fast: false

581923
units: 456180
value: 0.0
type: LocalParameter

593659
units: 456180
value: 0.0
type: LocalParameter

586312
units: 456180
value: 1000.0
type: LocalParameter

587995
units: 456180
value: 0.0
type: LocalParameter

585630
units: 456180
value: 0.0
type: LocalParameter

542802
stoichiometry: 1.0
species: 577902
type: SpeciesReference

579691
kinetic law: 511147
product: 511135
reactant: 511123
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: dUMP transport via diffusion (extracellular to periplasm)
type: Reaction

528464
stoichiometry: 1.0
species: 577848
type: SpeciesReference

516340
stoichiometry: 1.0
species: 575090
type: SpeciesReference

624428
stoichiometry: 1.0
species: 575090
type: SpeciesReference

470687
stoichiometry: 1.0
species: 574018
type: SpeciesReference

496954
stoichiometry: 1.0
species: 575564
type: SpeciesReference

563234
stoichiometry: 1.0
species: 577995
type: SpeciesReference

574722
stoichiometry: 1.0
species: 575090
type: SpeciesReference

596406
units: 456180
value: 0.0
type: LocalParameter

581231
name: pyruvate synthase
type: Reaction
product: 599667
reversible: true
fast: false
kinetic law: 599703
reactant: 599619
product: 599691
reactant: 599631
product: 599679
product: 599655
reactant: 599643
notes: GENE_ASSOCIATION: ((b0684 and b1378) or (b2895 and b1378)) SUBSYSTEM: Pyruvate Metabolism EC Number: 1.2.7.1

581922
units: 456180
value: 1000.0
type: LocalParameter

587996
units: 456180
value: 1000.0
type: LocalParameter

536862
stoichiometry: 1.0
species: 575060
type: SpeciesReference

592415
units: 456180
value: 1000.0
type: LocalParameter

590357
units: 456180
value: 1000.0
type: LocalParameter

579692
fast: false
product: 511207
reactant: 511159
notes: GENE_ASSOCIATION: (b2147 and b2146) SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 1.3.1.1
product: 511195
name: dihydrouracil dehydrogenase (NAD)
reversible: true
product: 511183
kinetic law: 511219
reactant: 511171
type: Reaction

582862
units: 456180
value: 1000.0
type: LocalParameter

524538
stoichiometry: 1.0
species: 575920
type: SpeciesReference

593658
units: 456180
value: 0.0
type: LocalParameter

459066
stoichiometry: 1.0
species: 576541
type: SpeciesReference

594290
units: 456180
value: 0.0
type: LocalParameter

596407
units: 456180
value: -1000.0
type: LocalParameter

574721
notes: FORMULA: C9H12N2O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Deoxyuridine
type: Species

585632
units: 456180
value: 1000.0
type: LocalParameter

538270
stoichiometry: 1.0
species: 577884
type: SpeciesReference

588519
units: 456180
value: 1000.0
type: LocalParameter

550280
stoichiometry: 1.0
species: 578018
type: SpeciesReference

581925
units: 456180
value: 0.0
type: LocalParameter

581234
notes: GENE_ASSOCIATION: (b2744 or b4226 or b2502) SUBSYSTEM: Anaplerotic Reactions EC Number: 3.6.1.1
reversible: false
reactant: 599813
product: 599837
type: Reaction
reactant: 599801
kinetic law: 599849
name: inorganic diphosphatase
product: 599825
fast: false

559117
stoichiometry: 1.0
species: 577953
type: SpeciesReference

579693
type: Reaction
notes: GENE_ASSOCIATION: b1238 SUBSYSTEM: Nucleotide Salvage Pathway EC Number:
reactant: 511231
product: 511279
reactant: 511243
reversible: false
product: 511267
fast: false
product: 511255
name: deoxyuridine kinase (ATP:Deoxyuridine)
kinetic law: 511291

590356
units: 456180
value: 0.0
type: LocalParameter

582863
units: 456180
value: 0.0
type: LocalParameter

591721
units: 456180
value: 0.0
type: LocalParameter

592412
units: 456180
value: 0.0
type: LocalParameter

594291
units: 456180
value: 0.0
type: LocalParameter

512670
stoichiometry: 1.0
species: 575525
type: SpeciesReference

586315
units: 456180
value: 0.0
type: LocalParameter

574724
notes: FORMULA: C9H11N2O14P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dUTP
type: Species

596618
units: 456180
value: 1000.0
type: LocalParameter

500386
stoichiometry: 1.0
species: 577734
type: SpeciesReference

585633
units: 456180
value: 0.0
type: LocalParameter

586071
units: 456180
value: 0.0
type: LocalParameter

590569
units: 456180
value: 0.0
type: LocalParameter

587994
units: 456180
value: 0.0
type: LocalParameter

586313
units: 456180
value: 0.0
type: LocalParameter

581233
stoichiometry: 1.0
species: 575519
type: SpeciesReference

581924
units: 456180
value: 0.0
type: LocalParameter

591722
units: 456180
value: 0.0
type: LocalParameter

590355
units: 456180
value: 0.0
type: LocalParameter

457789
stoichiometry: 54.124831
species: 574373
type: SpeciesReference

543373
stoichiometry: 4.0
species: 575090
type: SpeciesReference

596619
units: 456180
value: 0.0
type: LocalParameter

482532
stoichiometry: 1.0
species: 575785
type: SpeciesReference

586070
units: 456180
value: 1000.0
type: LocalParameter

594292
stoichiometry: 1.0
species: 578076
type: SpeciesReference

596405
units: 456180
value: 0.0
type: LocalParameter

500169
stoichiometry: 1.0
species: 574517
type: SpeciesReference

585636
units: 456180
value: -1000.0
type: LocalParameter

596403
units: 456180
value: 1000.0
type: LocalParameter

594282
units: 456180
value: 1000.0
type: LocalParameter

532482
stoichiometry: 1.0
species: 577863
type: SpeciesReference

590570
units: 456180
value: 0.0
type: LocalParameter

600576
stoichiometry: 1.0
species: 575824
type: SpeciesReference

579470
reactant: 502672
type: Reaction
notes: GENE_ASSOCIATION: b2810 SUBSYSTEM: Cysteine Metabolism EC Number: 4.1.1.12
reversible: false
kinetic law: 502720
fast: false
name: L-cysteine sulfinic acid desulfurase
product: 502696
product: 502708
reactant: 502684

590999
units: 456180
value: 0.0
type: LocalParameter

592407
units: 456180
value: 1000.0
type: LocalParameter

590349
units: 456180
value: 0.0
type: LocalParameter

582410
units: 456180
value: 0.0
type: LocalParameter

579696
reactant: 511363
product: 511387
reversible: false
kinetic law: 511411
fast: false
product: 511399
name: deoxyuridine transport in via proton symport (periplasm)
notes: GENE_ASSOCIATION: (b2964 or b2393) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 511375
type: Reaction

596402
units: 456180
value: 0.0
type: LocalParameter

623475
stoichiometry: 1.0
species: 575102
type: SpeciesReference

587002
units: 456180
value: 0.0
type: LocalParameter

586073
units: 456180
value: 0.0
type: LocalParameter

585635
units: 456180
value: 0.0
type: LocalParameter

579897
product: 522076
fast: false
reactant: 522052
notes: GENE_ASSOCIATION: (b0584 and (b1252 and b3005 and b3006)) SUBSYSTEM: Transport, Outer Membrane EC Number:
reversible: false
reactant: 522040
name: Fe-enterobactin transport via ton system (extracellular)
type: Reaction
kinetic law: 522088
product: 522064

588940
units: 456180
value: 0.0
type: LocalParameter

615161
stoichiometry: 1.0
species: 575324
type: SpeciesReference

590572
units: 456180
value: 1000.0
type: LocalParameter

530335
stoichiometry: 1.0
species: 574478
type: SpeciesReference

573790
notes: FORMULA: C19H37O7P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-hexadecanoyl-sn-glycerol 3-phosphate
type: Species

586740
stoichiometry: 1.0
species: 575090
type: SpeciesReference

507588
stoichiometry: 1.0
species: 575525
type: SpeciesReference

583580
units: 456180
value: 1000.0
type: LocalParameter

592406
units: 456180
value: 0.0
type: LocalParameter

579695
product: 511339
kinetic law: 511351
type: Reaction
reactant: 511315
notes: GENE_ASSOCIATION: (b4382 or b4384) SUBSYSTEM: Nucleotide Salvage Pathway EC Number:
fast: false
name: deoxyuridine phosphorylase
reversible: true
reactant: 511303
product: 511327

581018
product: 575277
product: 575265
kinetic law: 575289
reactant: 575205
reactant: 575217
type: Reaction
name: pantothenate synthase
product: 575253
product: 575241
reactant: 575229
reversible: false
notes: GENE_ASSOCIATION: b0133 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 6.3.2.1
fast: false

481161
stoichiometry: 1.0
species: 574199
type: SpeciesReference

501548
stoichiometry: 4.0
species: 577887
type: SpeciesReference

586074
units: 456180
value: 0.0
type: LocalParameter

587001
units: 456180
value: 0.0
type: LocalParameter

585638
stoichiometry: 1.0
species: 575099
type: SpeciesReference

596401
units: 456180
value: 0.0
type: LocalParameter

618312
stoichiometry: 1.0
species: 575711
type: SpeciesReference

586741
units: 456180
value: 1000.0
type: LocalParameter

563957
stoichiometry: 1.0
species: 575531
type: SpeciesReference

544547
stoichiometry: 1.0
species: 575090
type: SpeciesReference

581019
reversible: false
name: Phosphatidate phosphatase (n-C12:0)
product: 575325
type: Reaction
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
fast: false
kinetic law: 575350
product: 575337
reactant: 575313
reactant: 575301

526102
stoichiometry: 1.0
species: 575090
type: SpeciesReference

582412
units: 456180
value: 0.0
type: LocalParameter

517855
stoichiometry: 1.0
species: 575606
type: SpeciesReference

592405
units: 456180
value: 0.0
type: LocalParameter

587000
units: 456180
value: 0.0
type: LocalParameter

594283
units: 456180
value: 0.0
type: LocalParameter

585637
units: 456180
value: 1000.0
type: LocalParameter

477929
stoichiometry: 1.0
species: 574584
type: SpeciesReference

499770
stoichiometry: 1.0
species: 575558
type: SpeciesReference

586075
units: 456180
value: 1000.0
type: LocalParameter

579899
fast: false
product: 522136
kinetic law: 522148
name: enterochelin transport (secretion)
reactant: 522112
product: 522124
notes: GENE_ASSOCIATION: b0591 SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: false
type: Reaction
reactant: 522100

543640
stoichiometry: 4.0
species: 575090
type: SpeciesReference

595450
units: 456180
value: 0.0
type: LocalParameter

592404
stoichiometry: 1.0
species: 575030
type: SpeciesReference

590998
units: 456180
value: 0.0
type: LocalParameter

579471
kinetic law: 502792
name: cystathionine b-lyase
type: Reaction
product: 502756
fast: false
product: 502768
reactant: 502732
reversible: false
product: 502780
notes: GENE_ASSOCIATION: (b1622 or b3008) SUBSYSTEM: Methionine Metabolism EC Number: 4.4.1.8
reactant: 502744

586742
units: 456180
value: 0.0
type: LocalParameter

558540
stoichiometry: 1.0
species: 577956
type: SpeciesReference

579697
kinetic law: 511447
product: 511435
reactant: 511423
notes: GENE_ASSOCIATION: b0411 SUBSYSTEM: Transport, Outer Membrane EC Number:
fast: false
reversible: true
name: deoxyuridine transport via diffusion (extracellular to periplasm)
type: Reaction

590348
units: 456180
value: 0.0
type: LocalParameter

487899
stoichiometry: 1.0
species: 575120
type: SpeciesReference

458935
stoichiometry: 1.0
species: 576526
type: SpeciesReference

499082
stoichiometry: 2.0
species: 575090
type: SpeciesReference

586744
units: 456180
value: 0.0
type: LocalParameter

602568
stoichiometry: 1.0
species: 575863
type: SpeciesReference

614642
stoichiometry: 1.0
species: 575785
type: SpeciesReference

594286
units: 456180
value: 0.0
type: LocalParameter

481857
stoichiometry: 1.0
species: 574195
type: SpeciesReference

582858
units: 456180
value: 0.0
type: LocalParameter

581013
kinetic law: 574950
product: 574938
reactant: 574926
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: phenethylacetaldehyde transport via diffusion (extracellular to periplasm)
type: Reaction

587008
units: 456180
value: 0.0
type: LocalParameter

590575
units: 456180
value: 0.0
type: LocalParameter

579474
type: Reaction
name: L-cysteine export via ABC system (cytoplasm to periplasm)
product: 502924
product: 502936
reactant: 502900
reactant: 502888
product: 502948
reactant: 502912
kinetic law: 502973
notes: GENE_ASSOCIATION: (b0886 and b0887) SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: false
product: 502960

524756
stoichiometry: 1.0
species: 576169
type: SpeciesReference

586077
units: 456180
value: 0.0
type: LocalParameter

520244
stoichiometry: 2.0
species: 574781
type: SpeciesReference

586745
units: 456180
value: 0.0
type: LocalParameter

471196
stoichiometry: 1.0
species: 574042
type: SpeciesReference

519809
stoichiometry: 1.0
species: 574781
type: SpeciesReference

594285
units: 456180
value: 0.0
type: LocalParameter

585639
units: 456180
value: 0.0
type: LocalParameter

553749
stoichiometry: 1.0
species: 575585
type: SpeciesReference

579699
kinetic law: 511519
notes: GENE_ASSOCIATION: (b3640 or b2251) SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.6.1.23
type: Reaction
product: 511507
product: 511495
product: 511483
name: dUTP diphosphatase
fast: false
reversible: false
reactant: 511471
reactant: 511459

566891
stoichiometry: 2.0
species: 575546
type: SpeciesReference

582857
units: 456180
value: 1000.0
type: LocalParameter

538985
stoichiometry: 1.0
species: 577044
type: SpeciesReference

587007
units: 456180
value: 0.0
type: LocalParameter

579473
kinetic law: 502876
reactant: 502816
product: 502840
type: Reaction
name: Cysteinyl-tRNA synthetase
product: 502852
fast: false
reversible: false
product: 502864
reactant: 502804
reactant: 502828
notes: GENE_ASSOCIATION: b0526 SUBSYSTEM: tRNA Charging EC Number: 6.1.1.16

567835
stoichiometry: 1.0
species: 575099
type: SpeciesReference

590576
units: 456180
value: 0.0
type: LocalParameter

565638
stoichiometry: 1.0
species: 577998
type: SpeciesReference

586746
units: 456180
value: 1000.0
type: LocalParameter

603943
stoichiometry: 1.0
species: 576016
type: SpeciesReference

586078
units: 456180
value: 0.0
type: LocalParameter

521092
stoichiometry: 1.0
species: 574826
type: SpeciesReference

482750
stoichiometry: 1.0
species: 576169
type: SpeciesReference

587005
units: 456180
value: 0.0
type: LocalParameter

594289
units: 456180
value: 0.0
type: LocalParameter

581015
product: 575034
reactant: 574974
reactant: 574962
name: ring 1,2-phenylacetyl-CoA epoxidase (NADPH)
type: Reaction
reactant: 574998
reversible: false
product: 575022
reactant: 574986
notes: GENE_ASSOCIATION: (b1388 and b1389 and b1390 and b1391 and b1392) SUBSYSTEM: Alternate Carbon Metabolism EC Number:
kinetic law: 575046
fast: false
product: 575010

591940
units: 456180
value: 0.0
type: LocalParameter

590573
units: 456180
value: 0.0
type: LocalParameter

586079
units: 456180
value: 0.0
type: LocalParameter

459285
stoichiometry: 1.0
species: 576568
type: SpeciesReference

543592
stoichiometry: 6.0
species: 575090
type: SpeciesReference

512452
stoichiometry: 1.0
species: 575519
type: SpeciesReference

594287
units: 456180
value: 1000.0
type: LocalParameter

587004
units: 456180
value: 1000.0
type: LocalParameter

502864
stoichiometry: 1.0
species: 575824
type: SpeciesReference

581016
product: 575118
product: 575106
kinetic law: 575131
notes: GENE_ASSOCIATION: b1398 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 6.2.1.30
reactant: 575058
reactant: 575070
type: Reaction
product: 575094
reactant: 575082
name: phenylacetate-CoA ligase
reversible: false
fast: false

582859
units: 456180
value: 0.0
type: LocalParameter

579475
type: Reaction
reversible: false
kinetic law: 503070
product: 503045
name: L-cysteine uptake via ABC system (periplasm)
product: 503021
reactant: 502985
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 503033
reactant: 502997
product: 503057
reactant: 503009
fast: false

469761
stoichiometry: 1.0
species: 575785
type: SpeciesReference

527786
stoichiometry: 1.0
species: 574901
type: SpeciesReference

477424
stoichiometry: 1.0
species: 577647
type: SpeciesReference

590574
stoichiometry: 1.0
species: 578067
type: SpeciesReference

594088
units: 456180
value: 0.0
type: LocalParameter

582418
units: 456180
value: 0.0
type: LocalParameter

588948
units: 456180
value: 1000.0
type: LocalParameter

518434
stoichiometry: 1.0
species: 575174
type: SpeciesReference

458510
stoichiometry: 53.95
species: 574239
type: SpeciesReference

590991
units: 456180
value: 1000.0
type: LocalParameter

560554
stoichiometry: 1.0
species: 574862
type: SpeciesReference

502431
stoichiometry: 1.0
species: 575534
type: SpeciesReference

606490
stoichiometry: 1.0
species: 578106
type: SpeciesReference

486088
stoichiometry: 1.0
species: 575099
type: SpeciesReference

601600
stoichiometry: 1.0
species: 574835
type: SpeciesReference

552517
stoichiometry: 1.0
species: 573852
type: SpeciesReference

595456
units: 456180
value: 0.0
type: LocalParameter

583588
units: 456180
value: 0.0
type: LocalParameter

579029
kinetic law: 481005
product: 480993
product: 480981
reactant: 480969
notes: GENE_ASSOCIATION: b1131 SUBSYSTEM: Purine and Pyrimidine Biosynthesis EC Number: 4.3.2.2
fast: false
reversible: true
name: adenylsuccinate lyase
type: Reaction

594087
units: 456180
value: 0.0
type: LocalParameter

582417
units: 456180
value: 0.0
type: LocalParameter

588949
units: 456180
value: 0.0
type: LocalParameter

531718
stoichiometry: 1.0
species: 575090
type: SpeciesReference

547102
stoichiometry: 1.0
species: 577887
type: SpeciesReference

590992
units: 456180
value: 0.0
type: LocalParameter

539395
stoichiometry: 1.0
species: 575519
type: SpeciesReference

588520
units: 456180
value: 0.0
type: LocalParameter

559926
stoichiometry: 1.0
species: 577667
type: SpeciesReference

610087
stoichiometry: 1.0
species: 574593
type: SpeciesReference

583589
units: 456180
value: 0.0
type: LocalParameter

590108
units: 456180
value: 0.0
type: LocalParameter

536013
stoichiometry: 1.0
species: 575090
type: SpeciesReference

595457
units: 456180
value: 1000.0
type: LocalParameter

580400
reversible: true
reactant: 546358
fast: false
product: 546382
type: Reaction
reactant: 546370
notes: GENE_ASSOCIATION: b3774 SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism EC Number: 1.1.1.86
name: ketol-acid reductoisomerase (2,3-dihydroxy-3-methylbutanoate)
kinetic law: 546418
product: 546406
product: 546394

488286
stoichiometry: 2.0
species: 574343
type: SpeciesReference

588946
units: 456180
value: -1000.0
type: LocalParameter

583585
units: 456180
value: 1000.0
type: LocalParameter

579242
kinetic law: 491431
reversible: true
name: aspartate transaminase
product: 491419
notes: GENE_ASSOCIATION: b0928 SUBSYSTEM: Alanine and Aspartate Metabolism EC Number: 2.6.1.1
product: 491407
reactant: 491383
fast: false
type: Reaction
reactant: 491395

591944
units: 456180
value: 0.0
type: LocalParameter

554124
stoichiometry: 1.0
species: 575342
type: SpeciesReference

579892
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
reactant: 521747
name: Fe-enterobactin reduction (Fe(III)-unloading)
reversible: false
kinetic law: 521820
reactant: 521759
fast: false
type: Reaction
product: 521808
product: 521795
product: 521771
product: 521783

590105
units: 456180
value: 1000.0
type: LocalParameter

623052
stoichiometry: 1.0
species: 574423
type: SpeciesReference

596833
stoichiometry: 1.0
species: 578042
type: SpeciesReference

528306
stoichiometry: 1.0
species: 577847
type: SpeciesReference

622166
stoichiometry: 1.0
species: 574177
type: SpeciesReference

573798
notes: FORMULA: C17H31O7P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-tetradec-7-enoyl-sn-glycerol 3-phosphate
type: Species

549400
stoichiometry: 1.0
species: 574373
type: SpeciesReference

607131
stoichiometry: 1.0
species: 575959
type: SpeciesReference

594089
units: 456180
value: 1000.0
type: LocalParameter

579241
kinetic law: 491371
product: 491359
product: 491347
reactant: 491335
notes: GENE_ASSOCIATION: b4139 SUBSYSTEM: Alanine and Aspartate Metabolism EC Number: 4.3.1.1
fast: false
reversible: false
name: L-aspartase
type: Reaction

591943
units: 456180
value: 1000.0
type: LocalParameter

625095
stoichiometry: 1.0
species: 578187
type: SpeciesReference

579891
kinetic law: 521735
reactant: 521675
fast: false
product: 521687
product: 521723
product: 521699
product: 521711
reactant: 521663
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
type: Reaction
name: Fe-enterobactin reduction (Fe(III)-unloading)
reversible: false

583587
units: 456180
value: 0.0
type: LocalParameter

590106
units: 456180
value: 0.0
type: LocalParameter

595459
units: 456180
value: 0.0
type: LocalParameter

591946
units: 456180
value: 0.0
type: LocalParameter

582414
units: 456180
value: 1000.0
type: LocalParameter

517069
stoichiometry: 1.0
species: 574295
type: SpeciesReference

590995
units: 456180
value: -1000.0
type: LocalParameter

590781
units: 456180
value: 1000.0
type: LocalParameter

536438
stoichiometry: 1.0
species: 575099
type: SpeciesReference

583583
units: 456180
value: 0.0
type: LocalParameter

595451
units: 456180
value: 0.0
type: LocalParameter

588944
units: 456180
value: 0.0
type: LocalParameter

582628
units: 456180
value: 0.0
type: LocalParameter

574309
notes: FORMULA: C7H6NO2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Anthranilate
type: Species

573796
notes: FORMULA: C5H6NO2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-Pyrroline-5-carboxylate
type: Species

590996
units: 456180
value: 1000.0
type: LocalParameter

582413
units: 456180
value: 0.0
type: LocalParameter

590782
units: 456180
value: 0.0
type: LocalParameter

579243
notes: GENE_ASSOCIATION: b1866 SUBSYSTEM: tRNA Charging EC Number: 6.1.1.12
fast: false
reactant: 491455
reactant: 491467
product: 491491
reversible: false
name: Aspartyl-tRNA synthetase
kinetic law: 491515
product: 491503
reactant: 491443
product: 491479
type: Reaction

479749
stoichiometry: 1.0
species: 575099
type: SpeciesReference

595452
units: 456180
value: 1000.0
type: LocalParameter

583584
units: 456180
value: 0.0
type: LocalParameter

582627
units: 456180
value: 0.0
type: LocalParameter

588945
units: 456180
value: 0.0
type: LocalParameter

573794
notes: FORMULA: C21H41O7P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-octadecanoyl-sn-glycerol 3-phosphate
type: Species

458313
stoichiometry: 0.215792
species: 576016
type: SpeciesReference

579893
product: 521869
reactant: 521857
name: Fe-enterobactin transport via ABC system (periplasm)
reversible: false
reactant: 521844
reactant: 521832
notes: GENE_ASSOCIATION: (b0592 and b0588 and b0590 and b0589) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
product: 521894
fast: false
type: Reaction
product: 521906
product: 521882
kinetic law: 521918

566023
stoichiometry: 1.0
species: 577224
type: SpeciesReference

567414
stoichiometry: 1.0
species: 575231
type: SpeciesReference

591948
units: 456180
value: 1000.0
type: LocalParameter

582416
units: 456180
value: 0.0
type: LocalParameter

573793
stoichiometry: 1.0
species: 575785
type: SpeciesReference

583581
units: 456180
value: 0.0
type: LocalParameter

595453
units: 456180
value: 0.0
type: LocalParameter

579246
kinetic law: 491673
product: 491661
product: 491649
fast: false
name: Aspartate transport via proton symport (2 H) (periplasm)
notes: GENE_ASSOCIATION: b3528 SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: false
type: Reaction
reactant: 491637
reactant: 491625

588941
units: 456180
value: 0.0
type: LocalParameter

503810
stoichiometry: 1.0
species: 574435
type: SpeciesReference

579896
product: 522003
reactant: 521991
kinetic law: 522027
type: Reaction
notes: GENE_ASSOCIATION: b3035 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
name: enterochelin transport (secretion periplasm)
reactant: 521979
reversible: false
product: 522015
fast: false

613483
stoichiometry: 1.0
species: 578124
type: SpeciesReference

520656
stoichiometry: 1.0
species: 575785
type: SpeciesReference

597791
stoichiometry: 1.0
species: 577568
type: SpeciesReference

591947
units: 456180
value: 0.0
type: LocalParameter

590994
units: 456180
value: 0.0
type: LocalParameter

573792
notes: FORMULA: C21H39O7P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-octadec-11-enoyl-sn-glycerol 3-phosphate
type: Species

582629
units: 456180
value: 0.0
type: LocalParameter

470015
stoichiometry: 1.0
species: 575099
type: SpeciesReference

579245
reactant: 491527
notes: GENE_ASSOCIATION: (b0655 and b0654 and b0653 and b0652) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 491539
kinetic law: 491612
reactant: 491551
product: 491588
fast: false
type: Reaction
product: 491576
reversible: false
product: 491600
product: 491564
name: L-aspartate transport via ABC system (periplasm)

595455
units: 456180
value: 0.0
type: LocalParameter

579895
kinetic law: 521967
product: 521955
reactant: 521942
reactant: 521930
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
reversible: false
name: enterobactin Fe(III) binding (spontaneous)
type: Reaction

588942
units: 456180
value: 1000.0
type: LocalParameter

512222
stoichiometry: 1.0
species: 576115
type: SpeciesReference

480485
stoichiometry: 1.0
species: 574235
type: SpeciesReference

580076
name: D-glucose transport via PEP:Pyr PTS (periplasm)
reactant: 531365
kinetic law: 531402
notes: GENE_ASSOCIATION: ((b2417 and b1621 and b2415 and b2416) or (b2417 and b1101 and b2415 and b2416) or (b1817 and b1818 and b1819 and b2415 and b2416)) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 531377
fast: false
reversible: false
product: 531389
type: Reaction
reactant: 531353

593660
units: 456180
value: 1000.0
type: LocalParameter

557666
stoichiometry: 1.0
species: 573912
type: SpeciesReference

596626
units: 456180
value: 0.0
type: LocalParameter

588502
units: 456180
value: 1000.0
type: LocalParameter

614413
stoichiometry: 3.0
species: 577887
type: SpeciesReference

594498
units: 456180
value: 0.0
type: LocalParameter

587985
units: 456180
value: 1000.0
type: LocalParameter

594081
units: 456180
value: 0.0
type: LocalParameter

590784
units: 456180
value: 0.0
type: LocalParameter

591939
units: 456180
value: 0.0
type: LocalParameter

582649
stoichiometry: 1.0
species: 574187
type: SpeciesReference

578082
notes: FORMULA: C3H5O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Propionate (n-C3:0)
type: Species

580077
reactant: 531426
product: 531438
reactant: 531414
type: Reaction
fast: false
notes: GENE_ASSOCIATION: b2943 SUBSYSTEM: Transport, Inner Membrane EC Number:
name: D-glucose transport in via proton symport (periplasm)
kinetic law: 531462
product: 531450
reversible: false

579035
notes: GENE_ASSOCIATION: (b2435 or b2817 or b4169) SUBSYSTEM: Murein Recycling EC Number:
kinetic law: 481331
product: 481307
type: Reaction
reactant: 481283
reactant: 481295
reversible: false
fast: false
product: 481319
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide amidase (periplasm)

520473
stoichiometry: 1.0
species: 577887
type: SpeciesReference

511062
stoichiometry: 1.0
species: 574688
type: SpeciesReference

586306
units: 456180
value: 1000.0
type: LocalParameter

588501
units: 456180
value: 0.0
type: LocalParameter

587987
units: 456180
value: 0.0
type: LocalParameter

594082
units: 456180
value: 0.0
type: LocalParameter

594499
units: 456180
value: 0.0
type: LocalParameter

504087
stoichiometry: 1.0
species: 575090
type: SpeciesReference

591714
units: 456180
value: 0.0
type: LocalParameter

535891
stoichiometry: 1.0
species: 575528
type: SpeciesReference

478507
stoichiometry: 1.0
species: 575099
type: SpeciesReference

574319
notes: FORMULA: C48H86O11P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: acyl phosphatidylglycerol (n-C14:1)
type: Species

580078
kinetic law: 531498
product: 531486
reactant: 531474
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: glucose transport via diffusion (extracellular to periplasm)
type: Reaction

613977
stoichiometry: 1.0
species: 575099
type: SpeciesReference

594495
units: 456180
value: 0.0
type: LocalParameter

520887
stoichiometry: 1.0
species: 577802
type: SpeciesReference

587988
units: 456180
value: 0.0
type: LocalParameter

590100
units: 456180
value: -1000.0
type: LocalParameter

586305
units: 456180
value: 0.0
type: LocalParameter

588505
units: 456180
value: 0.0
type: LocalParameter

590786
units: 456180
value: 1000.0
type: LocalParameter

582647
units: 456180
value: 0.0
type: LocalParameter

579033
product: 481197
reversible: false
kinetic law: 481209
fast: false
product: 481185
notes: GENE_ASSOCIATION: b0677 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 3.5.1.25
type: Reaction
reactant: 481161
reactant: 481173
name: N-acetylglucosamine-6-phosphate deacetylase

580079
kinetic law: 531534
product: 531522
reactant: 531510
notes: GENE_ASSOCIATION: b4036 SUBSYSTEM: Transport, Outer Membrane EC Number:
fast: false
reversible: false
name: D-glucose transport via diffusion (extracellular to periplasm) irreversible
type: Reaction

579259
product: 492290
kinetic law: 492314
reactant: 492266
type: Reaction
notes: GENE_ASSOCIATION: b2019 SUBSYSTEM: Histidine Metabolism EC Number: 2.4.2.17
reversible: false
fast: false
reactant: 492278
product: 492302
name: ATP phosphoribosyltransferase

578084
notes: FORMULA: C3H6O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Propanal
type: Species

591711
units: 456180
value: 0.0
type: LocalParameter

518227
stoichiometry: 1.0
species: 574766
type: SpeciesReference

565650
stoichiometry: 1.0
species: 574239
type: SpeciesReference

507139
stoichiometry: 1.0
species: 576781
type: SpeciesReference

465840
stoichiometry: 1.0
species: 577413
type: SpeciesReference

515697
stoichiometry: 1.0
species: 577798
type: SpeciesReference

587989
units: 456180
value: 0.0
type: LocalParameter

594496
units: 456180
value: 1000.0
type: LocalParameter

565081
stoichiometry: 1.0
species: 574724
type: SpeciesReference

586304
units: 456180
value: 0.0
type: LocalParameter

596629
stoichiometry: 1.0
species: 577580
type: SpeciesReference

590785
units: 456180
value: -1000.0
type: LocalParameter

591938
units: 456180
value: 0.0
type: LocalParameter

591712
units: 456180
value: 1000.0
type: LocalParameter

588504
units: 456180
value: 0.0
type: LocalParameter

579034
product: 481258
kinetic law: 481271
type: Reaction
reversible: false
reactant: 481222
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide amidase
fast: false
notes: GENE_ASSOCIATION: b0110 SUBSYSTEM: Murein Recycling EC Number:
reactant: 481234
product: 481246

594080
units: 456180
value: 0.0
type: LocalParameter

508974
stoichiometry: 1.0
species: 573969
type: SpeciesReference

574317
notes: FORMULA: C48H92O11P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: acyl phosphatidylglycerol (n-C14:0)
type: Species

582648
units: 456180
value: 0.0
type: LocalParameter

590102
units: 456180
value: 0.0
type: LocalParameter

545910
stoichiometry: 1.0
species: 575099
type: SpeciesReference

612055
stoichiometry: 1.0
species: 577887
type: SpeciesReference

575398
stoichiometry: 1.0
species: 578076
type: SpeciesReference

456936
stoichiometry: 0.149336
species: 575417
type: SpeciesReference

501755
stoichiometry: 1.0
species: 575090
type: SpeciesReference

596622
units: 456180
value: -1000.0
type: LocalParameter

512016
stoichiometry: 1.0
species: 574581
type: SpeciesReference

495580
stoichiometry: 1.0
species: 574446
type: SpeciesReference

535490
stoichiometry: 1.0
species: 575051
type: SpeciesReference

590788
units: 456180
value: 0.0
type: LocalParameter

579039
reactant: 481464
product: 481500
fast: false
kinetic law: 481512
notes: GENE_ASSOCIATION: b0110 SUBSYSTEM: Murein Recycling EC Number:
type: Reaction
reversible: false
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide amidase
reactant: 481476
product: 481488

580697
reversible: false
kinetic law: 560347
type: Reaction
reactant: 560311
product: 560323
name: Maltodextrin glucosidase (maltoheptaose)
product: 560335
notes: GENE_ASSOCIATION: b0403 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
fast: false
reactant: 560299

580299
kinetic law: 541969
product: 541957
reactant: 541945
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-homoserine transport via diffusion (extracellular to periplasm)
type: Reaction

583376
units: 456180
value: 0.0
type: LocalParameter

594085
units: 456180
value: 0.0
type: LocalParameter

597561
stoichiometry: 1.0
species: 578058
type: SpeciesReference

582645
units: 456180
value: 0.0
type: LocalParameter

590101
units: 456180
value: 1000.0
type: LocalParameter

575399
notes: FORMULA: C6H11O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Mannonate
type: Species

596623
units: 456180
value: 1000.0
type: LocalParameter

580073
type: Reaction
fast: false
reactant: 531158
reversible: true
notes: GENE_ASSOCIATION: (b3909 or b3093) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 531195
name: D-glucuronate transport via proton symport, reversible (periplasm)
kinetic law: 531208
reactant: 531170
product: 531182

595248
units: 456180
value: 0.0
type: LocalParameter

574315
notes: FORMULA: C42H80O11P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: acyl phosphatidylglycerol (n-C12:0)
type: Species

468381
stoichiometry: 1.0
species: 575824
type: SpeciesReference

580698
kinetic law: 560384
product: 560372
reactant: 560360
notes: GENE_ASSOCIATION: (b2558 or b2963 or b4392 or b2813 or b2701 or b1193) SUBSYSTEM: Murein Recycling EC Number:
fast: false
reversible: false
name: murein lytic transglycosylase (murein4p4p) (periplasm)
type: Reaction

578085
notes: FORMULA: C9H9O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phenylpropanoate
type: Species

593664
units: 456180
value: 0.0
type: LocalParameter

583375
units: 456180
value: 0.0
type: LocalParameter

591718
units: 456180
value: 1000.0
type: LocalParameter

582646
units: 456180
value: 1000.0
type: LocalParameter

494791
stoichiometry: 1.0
species: 575108
type: SpeciesReference

475175
stoichiometry: 1.0
species: 574076
type: SpeciesReference

530951
stoichiometry: 1.0
species: 576370
type: SpeciesReference

586309
units: 456180
value: 0.0
type: LocalParameter

575396
notes: FORMULA: C9H14O12P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2(alpha-D-Mannosyl-6-phosphate)-D-glycerate
type: Species

590104
units: 456180
value: -1000.0
type: LocalParameter

588500
units: 456180
value: 0.0
type: LocalParameter

583379
units: 456180
value: 0.0
type: LocalParameter

595247
units: 456180
value: 1000.0
type: LocalParameter

580074
kinetic law: 531244
product: 531232
reactant: 531220
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-glucuronat transport via diffusion (extracellular to periplasm)
type: Reaction

579037
product: 481367
product: 481379
kinetic law: 481391
type: Reaction
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide beta -1,4-N-acetylglucosaminidase
reversible: false
reactant: 481355
fast: false
notes: GENE_ASSOCIATION: b1107 SUBSYSTEM: Murein Recycling EC Number:
reactant: 481343

578088
notes: FORMULA: C5H9NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Proline
type: Species

593663
units: 456180
value: 0.0
type: LocalParameter

580695
reactant: 560239
reversible: false
name: Maltodextrin glucosidase (maltohexaose)
product: 560275
kinetic law: 560287
fast: false
type: Reaction
reactant: 560251
notes: GENE_ASSOCIATION: b0403 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
product: 560263

475767
stoichiometry: 1.0
species: 574478
type: SpeciesReference

610677
stoichiometry: 1.0
species: 574478
type: SpeciesReference

591715
units: 456180
value: 0.0
type: LocalParameter

582643
units: 456180
value: 0.0
type: LocalParameter

586308
units: 456180
value: 0.0
type: LocalParameter

590103
units: 456180
value: 0.0
type: LocalParameter

609405
stoichiometry: 1.0
species: 575099
type: SpeciesReference

596625
units: 456180
value: 0.0
type: LocalParameter

464477
stoichiometry: 1.0
species: 577245
type: SpeciesReference

599837
stoichiometry: 2.0
species: 575785
type: SpeciesReference

583378
units: 456180
value: 1000.0
type: LocalParameter

580075
notes: GENE_ASSOCIATION: (b2149 and b2150 and b2148) SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
product: 531305
kinetic law: 531341
product: 531317
reversible: false
reactant: 531256
product: 531293
product: 531329
reactant: 531269
name: D-glucose transport via ABC system (periplasm)
reactant: 531281
type: Reaction

595246
units: 456180
value: -1000.0
type: LocalParameter

620788
stoichiometry: 1.0
species: 575090
type: SpeciesReference

595245
units: 456180
value: 0.0
type: LocalParameter

594084
units: 456180
value: 1000.0
type: LocalParameter

593662
units: 456180
value: 0.0
type: LocalParameter

578087
notes: FORMULA: HO3P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphonate
type: Species

579038
fast: false
type: Reaction
product: 481440
reactant: 481415
product: 481427
name: GlcNAc-anhMurNAc tripeptide transport in via proton symport (periplasm)
notes: GENE_ASSOCIATION: b0433 SUBSYSTEM: Murein Recycling EC Number:
kinetic law: 481452
reversible: false
reactant: 481403

590789
units: 456180
value: 0.0
type: LocalParameter

574313
notes: FORMULA: C20H24N10O22P5 CHARGE: -5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: P1,P5-Bis(5'-adenosyl) pentaphosphate
type: Species

582644
units: 456180
value: 0.0
type: LocalParameter

591716
units: 456180
value: 0.0
type: LocalParameter

581917
units: 456180
value: 0.0
type: LocalParameter

581024
reactant: 575496
product: 575533
fast: false
type: Reaction
kinetic law: 575545
reversible: false
name: Phosphatidate phosphatase (periplasmic, n-C14:0)
product: 575521
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
reactant: 575509

585640
units: 456180
value: 0.0
type: LocalParameter

579467
kinetic law: 502588
product: 502576
reactant: 502564
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-cysteine transport via diffusion (extracellular to periplasm)
type: Reaction

582641
units: 456180
value: 0.0
type: LocalParameter

587009
units: 456180
value: 1000.0
type: LocalParameter

619570
stoichiometry: 1.0
species: 577997
type: SpeciesReference

505457
stoichiometry: 1.0
species: 575090
type: SpeciesReference

592420
units: 456180
value: 1000.0
type: LocalParameter

593669
units: 456180
value: 0.0
type: LocalParameter

583372
units: 456180
value: 1000.0
type: LocalParameter

595244
units: 456180
value: 0.0
type: LocalParameter

590554
units: 456180
value: -1000.0
type: LocalParameter

582855
units: 456180
value: 0.0
type: LocalParameter

580692
reactant: 560131
kinetic law: 560167
reactant: 560119
name: Maltodextrin glucosidase (maltotetraose)
notes: GENE_ASSOCIATION: b0403 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
reversible: false
product: 560143
fast: false
product: 560155
type: Reaction

574311
notes: FORMULA: C20H24N10O19P4 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: P1,P4-Bis(5'-adenosyl) tetraphosphate
type: Species

557896
stoichiometry: 1.0
species: 577949
type: SpeciesReference

503204
stoichiometry: 1.0
species: 575486
type: SpeciesReference

581916
units: 456180
value: 0.0
type: LocalParameter

582642
units: 456180
value: 1000.0
type: LocalParameter

578089
stoichiometry: 1.0
species: 575099
type: SpeciesReference

585641
units: 456180
value: -1000.0
type: LocalParameter

581249
product: 600419
kinetic law: 600431
reactant: 600370
reversible: false
notes: GENE_ASSOCIATION: b3403 SUBSYSTEM: Anaplerotic Reactions EC Number: 4.1.1.49
type: Reaction
reactant: 600382
product: 600407
product: 600394
name: phosphoenolpyruvate carboxykinase
fast: false

544317
stoichiometry: 1.0
species: 577905
type: SpeciesReference

583371
units: 456180
value: 0.0
type: LocalParameter

623646
stoichiometry: 1.0
species: 578178
type: SpeciesReference

590553
units: 456180
value: 0.0
type: LocalParameter

582856
units: 456180
value: 0.0
type: LocalParameter

580694
name: Maltodextrin glucosidase (maltopentaose)
type: Reaction
notes: GENE_ASSOCIATION: b0403 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
product: 560215
reactant: 560191
reversible: false
product: 560203
fast: false
reactant: 560179
kinetic law: 560227

506958
stoichiometry: 1.0
species: 573975
type: SpeciesReference

611451
stoichiometry: 1.0
species: 575998
type: SpeciesReference

481415
stoichiometry: 1.0
species: 577887
type: SpeciesReference

608644
stoichiometry: 1.0
species: 575099
type: SpeciesReference

574739
notes: FORMULA: C6H9N2O6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate
type: Species

581022
reversible: false
kinetic law: 575484
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
type: Reaction
fast: false
reactant: 575422
reactant: 575434
product: 575460
name: Phosphatidate phosphatase (n-C14:0)
product: 575472

579465
reactant: 502395
reversible: false
product: 502443
notes: GENE_ASSOCIATION: (b3708 or b3008) SUBSYSTEM: Cysteine Metabolism EC Number: 4.1.99.1
name: Cysteine Desulfhydrase
reactant: 502407
kinetic law: 502455
fast: false
type: Reaction
product: 502431
product: 502419

618759
stoichiometry: 1.0
species: 578147
type: SpeciesReference

583374
units: 456180
value: 0.0
type: LocalParameter

601816
stoichiometry: 1.0
species: 575090
type: SpeciesReference

590342
units: 456180
value: 0.0
type: LocalParameter

595242
units: 456180
value: 1000.0
type: LocalParameter

593667
units: 456180
value: 0.0
type: LocalParameter

580070
reactant: 531060
notes: GENE_ASSOCIATION: b3626 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
name: glucosyltransferase III (LPS core synthesis)
product: 531096
reactant: 531048
fast: false
reversible: false
product: 531084
product: 531072
kinetic law: 531108
type: Reaction

560119
stoichiometry: 1.0
species: 575099
type: SpeciesReference

581021
reactant: 575362
kinetic law: 575410
product: 575398
fast: false
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
type: Reaction
reversible: false
name: Phosphatidate phosphatase (periplasmic, n-C12:0)
reactant: 575374
product: 575386

540642
stoichiometry: 1.0
species: 574100
type: SpeciesReference

581914
units: 456180
value: 0.0
type: LocalParameter

587980
units: 456180
value: 1000.0
type: LocalParameter

582640
units: 456180
value: 0.0
type: LocalParameter

581247
product: 600334
reversible: false
notes: GENE_ASSOCIATION: b3639 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 4.1.1.36
reactant: 600309
kinetic law: 600358
type: Reaction
product: 600346
fast: false
name: phosphopantothenoylcysteine decarboxylase
reactant: 600322

579466
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
name: D-cysteine uptake via ABC system (periplasm)
kinetic law: 502552
reactant: 502467
product: 502540
product: 502527
fast: false
product: 502503
reactant: 502491
reversible: false
type: Reaction
product: 502515
reactant: 502479

530106
stoichiometry: 1.0
species: 575519
type: SpeciesReference

590341
units: 456180
value: 1000.0
type: LocalParameter

592423
units: 456180
value: 0.0
type: LocalParameter

582854
units: 456180
value: 0.0
type: LocalParameter

590555
units: 456180
value: 1000.0
type: LocalParameter

593666
units: 456180
value: 1000.0
type: LocalParameter

477215
stoichiometry: 1.0
species: 574211
type: SpeciesReference

595241
units: 456180
value: 0.0
type: LocalParameter

580071
kinetic law: 531145
product: 531133
reactant: 531121
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-glucuronate 1-phosphate transport via diffusion (extracellular to periplasm)
type: Reaction

575393
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Mannose 6-phosphate
type: Species

580691
reactant: 560071
notes: GENE_ASSOCIATION: b0403 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
type: Reaction
product: 560083
reversible: false
product: 560095
reactant: 560059
fast: false
kinetic law: 560107
name: Maltodextrin glucosidase (maltotriose)

571402
stoichiometry: 1.0
species: 578019
type: SpeciesReference

474388
stoichiometry: 1.0
species: 575585
type: SpeciesReference

566879
stoichiometry: 1.0
species: 575522
type: SpeciesReference

590344
units: 456180
value: 0.0
type: LocalParameter

595240
units: 456180
value: 0.0
type: LocalParameter

564622
stoichiometry: 1.0
species: 577994
type: SpeciesReference

582851
units: 456180
value: 0.0
type: LocalParameter

460973
stoichiometry: 1.0
species: 576778
type: SpeciesReference

592424
units: 456180
value: 0.0
type: LocalParameter

553206
stoichiometry: 1.0
species: 575099
type: SpeciesReference

579031
reactant: 481065
name: adenylosuccinate synthase
product: 481125
notes: GENE_ASSOCIATION: b4177 SUBSYSTEM: Purine and Pyrimidine Biosynthesis EC Number: 6.3.4.4
product: 481101
fast: false
reactant: 481077
kinetic law: 481149
type: Reaction
reactant: 481089
reversible: false
product: 481137
product: 481113

590558
units: 456180
value: 0.0
type: LocalParameter

587981
units: 456180
value: 0.0
type: LocalParameter

581246
reactant: 600237
product: 600273
kinetic law: 600297
name: phosphoenolpyruvate carboxylase
reactant: 600225
type: Reaction
notes: GENE_ASSOCIATION: b3956 SUBSYSTEM: Anaplerotic Reactions EC Number: 4.1.1.31
reactant: 600249
product: 600261
fast: false
reversible: false
product: 600285

581913
units: 456180
value: 1000.0
type: LocalParameter

586302
units: 456180
value: 0.0
type: LocalParameter

586303
stoichiometry: 1.0
species: 575099
type: SpeciesReference

574736
notes: FORMULA: C17H27N2O10PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Enoylglutaryl-[acyl-carrier protein] methyl ester
type: Species

460176
stoichiometry: 1.0
species: 576679
type: SpeciesReference

575390
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Mannose 1-phosphate
type: Species

582852
units: 456180
value: 1000.0
type: LocalParameter

591710
units: 456180
value: 0.0
type: LocalParameter

573090
stoichiometry: 1.0
species: 575785
type: SpeciesReference

592425
units: 456180
value: 0.0
type: LocalParameter

590557
units: 456180
value: 0.0
type: LocalParameter

588506
units: 456180
value: 0.0
type: LocalParameter

586301
units: 456180
value: 1000.0
type: LocalParameter

581245
stoichiometry: 1.0
species: 575090
type: SpeciesReference

513965
stoichiometry: 1.0
species: 576412
type: SpeciesReference

594494
units: 456180
value: 0.0
type: LocalParameter

482544
stoichiometry: 1.0
species: 574191
type: SpeciesReference

585646
units: 456180
value: 0.0
type: LocalParameter

483911
stoichiometry: 1.0
species: 577665
type: SpeciesReference

594280
units: 456180
value: 0.0
type: LocalParameter

543385
stoichiometry: 1.0
species: 575246
type: SpeciesReference

528452
stoichiometry: 1.0
species: 576963
type: SpeciesReference

506838
stoichiometry: 1.0
species: 577760
type: SpeciesReference

583370
units: 456180
value: 0.0
type: LocalParameter

590346
units: 456180
value: 1000.0
type: LocalParameter

538755
stoichiometry: 1.0
species: 577892
type: SpeciesReference

579469
fast: false
notes: GENE_ASSOCIATION: (b2414 or b2421) SUBSYSTEM: Cysteine Metabolism EC Number:
product: 502648
reactant: 502600
product: 502624
reversible: false
name: cysteine synthase
type: Reaction
product: 502636
reactant: 502612
kinetic law: 502660

581244
product: 600176
reactant: 600164
product: 600200
type: Reaction
name: porphobilinogen synthase
product: 600188
reversible: false
fast: false
kinetic law: 600213
notes: GENE_ASSOCIATION: b0369 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 4.2.1.24

581911
units: 456180
value: 0.0
type: LocalParameter

587983
units: 456180
value: 0.0
type: LocalParameter

588509
units: 456180
value: 0.0
type: LocalParameter

574734
stoichiometry: 1.0
species: 575785
type: SpeciesReference

585643
units: 456180
value: 1000.0
type: LocalParameter

594491
units: 456180
value: 1000.0
type: LocalParameter

624416
stoichiometry: 1.0
species: 576448
type: SpeciesReference

470699
stoichiometry: 1.0
species: 575090
type: SpeciesReference

582850
units: 456180
value: 0.0
type: LocalParameter

581910
units: 456180
value: 0.0
type: LocalParameter

590345
units: 456180
value: 0.0
type: LocalParameter

581243
kinetic law: 600152
product: 600140
reactant: 600128
notes: GENE_ASSOCIATION: (b1377 or b0929 or b2215 or b0241) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: propionate transport via diffusion
type: Reaction

579030
kinetic law: 481053
product: 481041
product: 481029
reactant: 481017
notes: GENE_ASSOCIATION: b1131 SUBSYSTEM: Purine and Pyrimidine Biosynthesis EC Number: 4.3.2.2
fast: false
reversible: true
name: adenylosuccinate lyase
type: Reaction

536874
stoichiometry: 1.0
species: 575243
type: SpeciesReference

590559
units: 456180
value: -1000.0
type: LocalParameter

587984
units: 456180
value: 0.0
type: LocalParameter

588508
units: 456180
value: 1000.0
type: LocalParameter

585644
units: 456180
value: 0.0
type: LocalParameter

574733
notes: FORMULA: C4H7O7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Erythrose 4-phosphate
type: Species

594492
units: 456180
value: 0.0
type: LocalParameter

602798
stoichiometry: 1.0
species: 575711
type: SpeciesReference

492302
stoichiometry: 1.0
species: 575848
type: SpeciesReference

579888
product: 521555
kinetic law: 521567
name: ferrichrome transport via ton system (extracellular)
product: 521543
type: Reaction
fast: false
reactant: 521530
reactant: 521517
notes: GENE_ASSOCIATION: (b0150 and (b1252 and b3005 and b3006)) SUBSYSTEM: Transport, Outer Membrane EC Number:
reversible: false

586062
units: 456180
value: 0.0
type: LocalParameter

587013
units: 456180
value: 0.0
type: LocalParameter

594272
units: 456180
value: 0.0
type: LocalParameter

581240
kinetic law: 600056
product: 600044
reactant: 600032
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: true
name: propanal transport via channel (periplasm)
type: Reaction

563945
stoichiometry: 1.0
species: 575090
type: SpeciesReference

582424
units: 456180
value: 0.0
type: LocalParameter

574730
notes: FORMULA: C5H9O7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-deoxy-D-xylulose 5-phosphate
type: Species

565201
stoichiometry: 1.0
species: 574550
type: SpeciesReference

517843
stoichiometry: 1.0
species: 575090
type: SpeciesReference

595461
units: 456180
value: -1000.0
type: LocalParameter

618324
stoichiometry: 1.0
species: 578145
type: SpeciesReference

586753
units: 456180
value: 0.0
type: LocalParameter

590335
units: 456180
value: 1000.0
type: LocalParameter

499782
stoichiometry: 2.0
species: 574476
type: SpeciesReference

543652
stoichiometry: 1.0
species: 575255
type: SpeciesReference

586755
units: 456180
value: 0.0
type: LocalParameter

579887
kinetic law: 521505
product: 521493
reactant: 521481
reactant: 521468
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
reversible: false
name: ferrichrome Fe(III)-loading reaction (spontaneous)
type: Reaction

594271
units: 456180
value: 1000.0
type: LocalParameter

586063
units: 456180
value: 0.0
type: LocalParameter

587012
units: 456180
value: 0.0
type: LocalParameter

581241
product: 600092
kinetic law: 600116
product: 600104
type: Reaction
fast: false
reactant: 600080
reversible: false
reactant: 600068
name: Na+/Propionate symporter (periplasm)
notes: GENE_ASSOCIATION: b1015 SUBSYSTEM: Transport, Inner Membrane EC Number:

487887
stoichiometry: 2.0
species: 575090
type: SpeciesReference

579685
kinetic law: 510965
product: 510953
reactant: 510941
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-serine transport via diffusion (extracellular to periplasm)
type: Reaction

582423
units: 456180
value: 0.0
type: LocalParameter

592416
units: 456180
value: 0.0
type: LocalParameter

588951
units: 456180
value: 0.0
type: LocalParameter

530323
stoichiometry: 1.0
species: 574201
type: SpeciesReference

600564
stoichiometry: 1.0
species: 574373
type: SpeciesReference

587015
units: 456180
value: 1000.0
type: LocalParameter

501536
stoichiometry: 4.0
species: 577739
type: SpeciesReference

585648
units: 456180
value: 1000.0
type: LocalParameter

532494
stoichiometry: 1.0
species: 577890
type: SpeciesReference

586060
units: 456180
value: 0.0
type: LocalParameter

500157
stoichiometry: 1.0
species: 574509
type: SpeciesReference

592419
units: 456180
value: 0.0
type: LocalParameter

590337
units: 456180
value: 0.0
type: LocalParameter

579684
name: D-serine transport in via proton symport (periplasm)
reactant: 510893
notes: GENE_ASSOCIATION: b4208 SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: false
kinetic law: 510929
product: 510905
fast: false
product: 510917
type: Reaction
reactant: 510881

558757
stoichiometry: 1.0
species: 577955
type: SpeciesReference

583591
units: 456180
value: 1000.0
type: LocalParameter

461917
stoichiometry: 1.0
species: 576927
type: SpeciesReference

579885
kinetic law: 521456
reversible: false
reactant: 521395
name: ferrichrome transport via ABC system (periplasm)
type: Reaction
fast: false
product: 521432
product: 521407
product: 521444
reactant: 521383
product: 521420
reactant: 521371
notes: GENE_ASSOCIATION: (b0153 and b0151 and b0152) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:

588952
units: 456180
value: -1000.0
type: LocalParameter

585647
units: 456180
value: 0.0
type: LocalParameter

587014
stoichiometry: 1.0
species: 575785
type: SpeciesReference

544535
stoichiometry: 1.0
species: 573866
type: SpeciesReference

495797
stoichiometry: 1.0
species: 574496
type: SpeciesReference

592418
units: 456180
value: 0.0
type: LocalParameter

590338
units: 456180
value: 0.0
type: LocalParameter

582421
units: 456180
value: 0.0
type: LocalParameter

586752
units: 456180
value: 1000.0
type: LocalParameter

579683
stoichiometry: 1.0
species: 574373
type: SpeciesReference

595460
units: 456180
value: 0.0
type: LocalParameter

583592
units: 456180
value: 0.0
type: LocalParameter

489943
stoichiometry: 1.0
species: 574353
type: SpeciesReference

594276
units: 456180
value: 1000.0
type: LocalParameter

603955
stoichiometry: 1.0
species: 574474
type: SpeciesReference

521080
stoichiometry: 2.0
species: 574796
type: SpeciesReference

586066
units: 456180
value: 0.0
type: LocalParameter

507359
stoichiometry: 1.0
species: 573812
type: SpeciesReference

590561
units: 456180
value: 1000.0
type: LocalParameter

575809
notes: FORMULA: C3H5O5P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Propanoyl phosphate
type: Species

581027
kinetic law: 575715
reactant: 575679
reactant: 575667
reversible: false
product: 575703
fast: false
name: Phosphatidate phosphatase (periplasmic, n-C14:1)
type: Reaction
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
product: 575691

582420
units: 456180
value: 1000.0
type: LocalParameter

590339
units: 456180
value: 0.0
type: LocalParameter

587018
units: 456180
value: 0.0
type: LocalParameter

579250
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
type: Reaction
reversible: true
kinetic law: 491853
fast: false
reactant: 491817
reactant: 491805
name: L-aspartate transport in via proton symport (periplasm) reversible
product: 491829
product: 491841

527773
stoichiometry: 1.0
species: 577887
type: SpeciesReference

582848
units: 456180
value: 0.0
type: LocalParameter

599158
stoichiometry: 1.0
species: 575390
type: SpeciesReference

587016
units: 456180
value: 0.0
type: LocalParameter

594275
units: 456180
value: 0.0
type: LocalParameter

506619
stoichiometry: 1.0
species: 574733
type: SpeciesReference

512440
stoichiometry: 1.0
species: 576118
type: SpeciesReference

586067
units: 456180
value: 0.0
type: LocalParameter

586759
units: 456180
value: 0.0
type: LocalParameter

579463
reactant: 502335
fast: false
reversible: false
reactant: 502323
name: D-cysteine desulfhydrase
kinetic law: 502383
product: 502371
product: 502347
type: Reaction
product: 502359
notes: GENE_ASSOCIATION: b1919 SUBSYSTEM: Cysteine Metabolism EC Number: 4.4.1.15

590562
units: 456180
value: 0.0
type: LocalParameter

581028
reactant: 575739
type: Reaction
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
name: Phosphatidate phosphatase (n-C16:0)
kinetic law: 575775
reversible: false
reactant: 575727
fast: false
product: 575763
product: 575751

579689
kinetic law: 511110
product: 511098
reactant: 511086
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: dTMP transport via diffusion (extracellular to periplasm)
type: Reaction

582847
units: 456180
value: 1000.0
type: LocalParameter

481869
stoichiometry: 1.0
species: 574303
type: SpeciesReference

594274
units: 456180
value: 0.0
type: LocalParameter

612721
stoichiometry: 1.0
species: 578015
type: SpeciesReference

586064
units: 456180
value: 1000.0
type: LocalParameter

499070
stoichiometry: 2.0
species: 574781
type: SpeciesReference

586756
units: 456180
value: 0.0
type: LocalParameter

614630
stoichiometry: 1.0
species: 575090
type: SpeciesReference

579462
kinetic law: 502311
product: 502299
reactant: 502287
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: Cyanate transport via diffusion (extracellular to periplasm)
type: Reaction

581918
units: 456180
value: 1000.0
type: LocalParameter

579688
kinetic law: 511074
notes: GENE_ASSOCIATION: b1098 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 2.7.4.9
name: dTMP kinase
product: 511062
reactant: 511026
reactant: 511038
product: 511050
type: Reaction
reversible: true
fast: false

581025
reactant: 575557
name: Phosphatidate phosphatase (n-C14:1)
product: 575593
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
fast: false
reactant: 575569
product: 575581
reversible: false
kinetic law: 575655
type: Reaction

581919
units: 456180
value: 0.0
type: LocalParameter

579889
type: Reaction
name: Fe-enterobactin reduction (Fe(III)-unloading)
reactant: 521591
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
product: 521615
product: 521627
reactant: 521579
product: 521639
reversible: false
product: 521603
kinetic law: 521651

524768
stoichiometry: 1.0
species: 573758
type: SpeciesReference

520256
stoichiometry: 2.0
species: 574793
type: SpeciesReference

586757
units: 456180
value: 1000.0
type: LocalParameter

582845
units: 456180
value: 0.0
type: LocalParameter

590564
units: 456180
value: 0.0
type: LocalParameter

579461
reversible: false
kinetic law: 502275
fast: false
notes: GENE_ASSOCIATION: b0341 SUBSYSTEM: Transport, Inner Membrane EC Number:
name: Cyanate transport via proton symport (periplasm)
product: 502251
product: 502263
reactant: 502227
type: Reaction
reactant: 502239

567847
stoichiometry: 1.0
species: 574573
type: SpeciesReference

581026
stoichiometry: 1.0
species: 574108
type: SpeciesReference

618080
stoichiometry: 1.0
species: 575099
type: SpeciesReference

587019
units: 456180
value: 0.0
type: LocalParameter

575806
notes: FORMULA: C3H6O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Propanal
type: Species

607868
stoichiometry: 1.0
species: 576220
type: SpeciesReference

579687
kinetic law: 511014
product: 511001
product: 510989
reactant: 510977
notes: GENE_ASSOCIATION: b4122 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 4.2.1.81
fast: false
reversible: false
name: D(-)-tartrate dehydratase
type: Reaction

457571
stoichiometry: 0.012747
species: 578046
type: SpeciesReference

579254
product: 492000
type: Reaction
reactant: 491988
reversible: false
name: Arginine succinyltransferase
product: 492012
kinetic law: 492036
notes: GENE_ASSOCIATION: b1747 SUBSYSTEM: Arginine and Proline Metabolism EC Number: 2.3.1.109
reactant: 491976
product: 492024
fast: false

472359
stoichiometry: 1.0
species: 574050
type: SpeciesReference

591932
stoichiometry: 1.0
species: 575090
type: SpeciesReference

522417
stoichiometry: 1.0
species: 577815
type: SpeciesReference

488274
stoichiometry: 1.0
species: 574766
type: SpeciesReference

551010
stoichiometry: 1.0
species: 577887
type: SpeciesReference

594078
units: 456180
value: 1000.0
type: LocalParameter

583598
stoichiometry: 1.0
species: 578051
type: SpeciesReference

580295
name: 2-hydroxy-6-ketononotrienedioate hydrolase
reversible: false
product: 541716
reactant: 541679
product: 541728
notes: GENE_ASSOCIATION: b0349 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
kinetic law: 541740
reactant: 541692
fast: false
product: 541704
type: Reaction

573786
notes: FORMULA: C15H29O7P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-dodecanoyl-sn-glycerol 3-phosphate
type: Species

596845
stoichiometry: 1.0
species: 577584
type: SpeciesReference

622178
stoichiometry: 1.0
species: 576328
type: SpeciesReference

549412
stoichiometry: 1.0
species: 575099
type: SpeciesReference

567401
stoichiometry: 1.0
species: 575099
type: SpeciesReference

561789
stoichiometry: 1.0
species: 575471
type: SpeciesReference

458715
stoichiometry: 1.0
species: 576499
type: SpeciesReference

579880
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
reactant: 521092
reversible: false
product: 521140
type: Reaction
fast: false
product: 521116
name: Ferrichrome reductase
kinetic law: 521152
product: 521128
product: 521104
reactant: 521080

554112
stoichiometry: 1.0
species: 575090
type: SpeciesReference

623040
stoichiometry: 1.0
species: 576421
type: SpeciesReference

625083
stoichiometry: 1.0
species: 577887
type: SpeciesReference

579253
notes: GENE_ASSOCIATION: (b3503 and b1064) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
product: 491928
kinetic law: 491964
reactant: 491904
type: Reaction
product: 491952
reactant: 491916
fast: false
name: arsenate reductase
reversible: false
product: 491940

461697
stoichiometry: 1.0
species: 576900
type: SpeciesReference

490913
stoichiometry: 1.0
species: 574363
type: SpeciesReference

573784
notes: FORMULA: C5H16N2 CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,5-Diaminopentane
type: Species

588959
units: 456180
value: 1000.0
type: LocalParameter

591931
units: 456180
value: 0.0
type: LocalParameter

605088
stoichiometry: 1.0
species: 574373
type: SpeciesReference

594077
units: 456180
value: -1000.0
type: LocalParameter

583599
units: 456180
value: 0.0
type: LocalParameter

607143
stoichiometry: 1.0
species: 574638
type: SpeciesReference

594279
units: 456180
value: 0.0
type: LocalParameter

580298
reversible: false
reactant: 541897
product: 541921
notes: GENE_ASSOCIATION: (b0813 or b3824) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 541885
product: 541909
type: Reaction
kinetic law: 541933
fast: false
name: L-homoserineserine efflux via proton symport

594076
units: 456180
value: 0.0
type: LocalParameter

575803
notes: FORMULA: C3H5O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Propionate (n-C3:0)
type: Species

591930
units: 456180
value: 1000.0
type: LocalParameter

531705
stoichiometry: 1.0
species: 574982
type: SpeciesReference

486076
stoichiometry: 1.0
species: 574261
type: SpeciesReference

596621
units: 456180
value: 0.0
type: LocalParameter

573788
notes: FORMULA: C19H35O7P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-hexadec-9-enoyl-sn-glycerol 3-phosphate
type: Species

595468
units: 456180
value: 1000.0
type: LocalParameter

586068
units: 456180
value: -1000.0
type: LocalParameter

560542
stoichiometry: 1.0
species: 575785
type: SpeciesReference

609627
stoichiometry: 1.0
species: 575522
type: SpeciesReference

591719
units: 456180
value: 0.0
type: LocalParameter

594278
units: 456180
value: 0.0
type: LocalParameter

539383
stoichiometry: 1.0
species: 573991
type: SpeciesReference

579251
kinetic law: 491891
product: 491878
reactant: 491865
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-aspartate transport via diffusion (extracellular to periplasm)
type: Reaction

580297
type: Reaction
kinetic law: 541873
reactant: 541813
name: hydroxymethylpyrimidine kinase (ATP)
product: 541849
product: 541861
fast: false
notes: GENE_ASSOCIATION: (b2103 or b2418) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 2.7.1.49
product: 541837
reactant: 541825
reversible: false

582429
units: 456180
value: 0.0
type: LocalParameter

559914
stoichiometry: 1.0
species: 577988
type: SpeciesReference

521991
stoichiometry: 1.0
species: 577887
type: SpeciesReference

580296
notes: GENE_ASSOCIATION: b3805 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 4.3.1.8
kinetic law: 541801
reversible: false
type: Reaction
reactant: 541764
product: 541788
name: hydroxymethylbilane synthase
reactant: 541752
fast: false
product: 541776

536001
stoichiometry: 1.0
species: 574940
type: SpeciesReference

473792
stoichiometry: 1.0
species: 576544
type: SpeciesReference

573781
stoichiometry: 1.0
species: 575090
type: SpeciesReference

582428
units: 456180
value: 0.0
type: LocalParameter

579258
product: 492218
reactant: 492194
fast: false
product: 492242
name: ATP maintenance requirement
product: 492230
kinetic law: 492254
reversible: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Unassigned EC Number:
reactant: 492206
type: Reaction

590790
units: 456180
value: -1000.0
type: LocalParameter

481379
stoichiometry: 1.0
species: 574305
type: SpeciesReference

568378
stoichiometry: 1.0
species: 577890
type: SpeciesReference

579884
fast: false
product: 521335
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
reactant: 521323
type: Reaction
reactant: 521311
product: 521347
kinetic law: 521359
reversible: false
name: ferrichrome (minus Fe) secretion (to periplasm)

588953
units: 456180
value: 1000.0
type: LocalParameter

595466
units: 456180
value: 0.0
type: LocalParameter

580291
type: Reaction
product: 541533
reactant: 541521
kinetic law: 541557
fast: false
notes: GENE_ASSOCIATION: b0112 SUBSYSTEM: Transport, Inner Membrane EC Number:
name: L-histidine reversible transport via proton symport (periplasm)
reversible: true
product: 541545
reactant: 541509

470003
stoichiometry: 1.0
species: 573995
type: SpeciesReference

575800
notes: FORMULA: C3H5NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Peroxyaminoacrylate
type: Species

588955
units: 456180
value: 0.0
type: LocalParameter

579257
product: 492168
type: Reaction
product: 492156
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Nucleotide Salvage Pathway EC Number:
reactant: 492144
reversible: false
reactant: 492120
kinetic law: 492181
name: ATP amine hydrolysis (spontaneous)
reactant: 492132
fast: false

586750
units: 456180
value: 0.0
type: LocalParameter

573780
notes: FORMULA: C32H38N7O19P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,4-dihydroxy-2-napthoyl-CoA
type: Species

583594
units: 456180
value: 0.0
type: LocalParameter

591935
units: 456180
value: 1000.0
type: LocalParameter

590792
units: 456180
value: 1000.0
type: LocalParameter

491805
stoichiometry: 1.0
species: 577691
type: SpeciesReference

582427
units: 456180
value: 0.0
type: LocalParameter

595467
units: 456180
value: 0.0
type: LocalParameter

512234
stoichiometry: 1.0
species: 574429
type: SpeciesReference

579883
name: ferrichrome (minus Fe) secretion (to extracellular)
type: Reaction
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
product: 521274
reactant: 521262
kinetic law: 521299
reactant: 521250
reversible: false
product: 521286

578090
notes: FORMULA: C7H12N2O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Prolinylglycine
type: Species

480497
stoichiometry: 1.0
species: 574239
type: SpeciesReference

580290
reactant: 541413
notes: GENE_ASSOCIATION: (b2309 and b2307 and b2306 and b2308) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 541449
reactant: 541437
kinetic law: 541497
product: 541473
name: L-histidine transport via ABC system (periplasm)
product: 541461
fast: false
reversible: false
reactant: 541425
product: 541485
type: Reaction

588956
units: 456180
value: 0.0
type: LocalParameter

536426
stoichiometry: 1.0
species: 574880
type: SpeciesReference

595463
units: 456180
value: 1000.0
type: LocalParameter

583595
units: 456180
value: -1000.0
type: LocalParameter

590793
units: 456180
value: 0.0
type: LocalParameter

517057
stoichiometry: 1.0
species: 577887
type: SpeciesReference

591934
units: 456180
value: 0.0
type: LocalParameter

587011
units: 456180
value: 0.0
type: LocalParameter

580293
product: 541631
kinetic law: 541667
product: 541655
reversible: false
notes: GENE_ASSOCIATION: b0349 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
product: 541643
fast: false
reactant: 541607
name: 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase
reactant: 541619
type: Reaction

578091
notes: FORMULA: C12H25N2O7 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: psicoselysine
type: Species

583596
units: 456180
value: 1000.0
type: LocalParameter

582639
units: 456180
value: 0.0
type: LocalParameter

588957
units: 456180
value: 0.0
type: LocalParameter

595464
units: 456180
value: 0.0
type: LocalParameter

579255
fast: false
reactant: 492048
reactant: 492060
product: 492096
product: 492084
type: Reaction
product: 492072
notes: GENE_ASSOCIATION: b1539 SUBSYSTEM: Threonine and Lysine Metabolism EC Number:
kinetic law: 492108
name: L-allo-threonine dehydrogenase
reversible: true

495360
stoichiometry: 1.0
species: 574448
type: SpeciesReference

573782
notes: FORMULA: C36H62O31 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,4-alpha-D-glucan
type: Species

582425
units: 456180
value: 1000.0
type: LocalParameter

591933
units: 456180
value: 0.0
type: LocalParameter

602204
stoichiometry: 1.0
species: 575090
type: SpeciesReference

479737
stoichiometry: 1.0
species: 575090
type: SpeciesReference

520026
stoichiometry: 1.0
species: 574784
type: SpeciesReference

566035
stoichiometry: 1.0
species: 578000
type: SpeciesReference

579881
name: Ferrichrome reductase
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
reversible: false
type: Reaction
reactant: 521165
product: 521225
product: 521189
reactant: 521177
product: 521201
fast: false
product: 521213
kinetic law: 521238

501055
stoichiometry: 1.0
species: 574373
type: SpeciesReference

580292
kinetic law: 541595
product: 541583
reactant: 541570
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-histidine transport via diffusion (extracellular to periplasm)
type: Reaction

458301
stoichiometry: 2.23E-4
species: 575965
type: SpeciesReference

583597
units: 456180
value: 0.0
type: LocalParameter

591703
units: 456180
value: 0.0
type: LocalParameter

618783
stoichiometry: 1.0
species: 576292
type: SpeciesReference

579001
reversible: false
fast: false
kinetic law: 479713
notes: GENE_ASSOCIATION: (b3360 and b1812) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
type: Reaction
product: 479689
reactant: 479665
product: 479701
reactant: 479677
name: 4-amino-4-deoxychorismate synthase

594071
units: 456180
value: -1000.0
type: LocalParameter

520680
stoichiometry: 1.0
species: 576870
type: SpeciesReference

588929
units: 456180
value: 0.0
type: LocalParameter

595210
units: 456180
value: 1000.0
type: LocalParameter

475731
stoichiometry: 1.0
species: 574187
type: SpeciesReference

579227
kinetic law: 490708
product: 490695
reactant: 490683
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-asparagine transport via diffusion (extracellular to periplasm)
type: Reaction

578076
notes: FORMULA: HO4P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphate
type: Species

580413
product: 547126
reversible: false
name: potassium transport out via proton antiport (periplasm)
reactant: 547102
kinetic law: 547138
notes: GENE_ASSOCIATION: (b1216 or b0842 or b3350 or b0047) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
type: Reaction
product: 547114
reactant: 547090
fast: false

593675
units: 456180
value: 0.0
type: LocalParameter

610665
stoichiometry: 1.0
species: 574223
type: SpeciesReference

502419
stoichiometry: 1.0
species: 575105
type: SpeciesReference

620776
stoichiometry: 1.0
species: 574239
type: SpeciesReference

595437
units: 456180
value: 0.0
type: LocalParameter

575114
notes: FORMULA: C16H31O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hexadecanoate (n-C16:0)
type: Species

591704
units: 456180
value: 0.0
type: LocalParameter

590753
units: 456180
value: 1000.0
type: LocalParameter

532689
stoichiometry: 1.0
species: 575090
type: SpeciesReference

579002
name: adenine deaminase
reactant: 479737
reactant: 479725
product: 479773
notes: GENE_ASSOCIATION: b3665 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.5.4.2
kinetic law: 479785
reversible: false
type: Reaction
product: 479761
fast: false
reactant: 479749

578075
notes: FORMULA: C34H30FeN4O4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Protoheme
type: Species

580414
kinetic law: 547174
product: 547162
reactant: 547150
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: potassium transport via diffusion (extracellular to periplasm)
type: Reaction

593674
units: 456180
value: 0.0
type: LocalParameter

606478
stoichiometry: 1.0
species: 578076
type: SpeciesReference

592431
units: 456180
value: 0.0
type: LocalParameter

609651
stoichiometry: 1.0
species: 575711
type: SpeciesReference

595436
units: 456180
value: 1000.0
type: LocalParameter

590139
units: 456180
value: 0.0
type: LocalParameter

543189
stoichiometry: 1.0
species: 575785
type: SpeciesReference

568586
stoichiometry: 1.0
species: 575785
type: SpeciesReference

472384
stoichiometry: 1.0
species: 574476
type: SpeciesReference

544342
stoichiometry: 1.0
species: 575216
type: SpeciesReference

554987
stoichiometry: 1.0
species: 577146
type: SpeciesReference

580415
notes: GENE_ASSOCIATION: (b3605 or (b0306 and b0307 and b0308)) SUBSYSTEM: Oxidative Phosphorylation EC Number: 1.1.2.3
product: 547211
name: L-Lactate dehydrogenase (ubiquinone)
product: 547223
fast: false
type: Reaction
kinetic law: 547235
reversible: false
reactant: 547199
reactant: 547186

591705
units: 456180
value: 0.0
type: LocalParameter

522208
stoichiometry: 2.0
species: 574808
type: SpeciesReference

597597
stoichiometry: 1.0
species: 578019
type: SpeciesReference

575117
notes: FORMULA: C16H32O5P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hexadecanoyl-phosphate (n-C16:0)
type: Species

590752
units: 456180
value: 0.0
type: LocalParameter

593677
units: 456180
value: 1000.0
type: LocalParameter

594073
units: 456180
value: 1000.0
type: LocalParameter

588927
units: 456180
value: 0.0
type: LocalParameter

579229
reactant: 490720
type: Reaction
kinetic law: 490805
product: 490769
name: arsenite efflux via ATP hydrolysis (periplasm)
product: 490781
notes: GENE_ASSOCIATION: b3502 SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 490744
fast: false
product: 490756
product: 490793
reversible: false
reactant: 490732

595212
units: 456180
value: 0.0
type: LocalParameter

579003
kinetic law: 479845
reactant: 479797
product: 479833
type: Reaction
reactant: 479809
reversible: true
name: adenine transport via proton symport (reversible) (periplasm)
notes: GENE_ASSOCIATION: (b3654 or b3714) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 479821
fast: false

595213
units: 456180
value: -1000.0
type: LocalParameter

595439
units: 456180
value: 0.0
type: LocalParameter

583389
units: 456180
value: 1000.0
type: LocalParameter

590138
units: 456180
value: 0.0
type: LocalParameter

612067
stoichiometry: 1.0
species: 578121
type: SpeciesReference

477941
stoichiometry: 1.0
species: 574763
type: SpeciesReference

582610
units: 456180
value: 1000.0
type: LocalParameter

580416
reversible: false
product: 547271
type: Reaction
notes: GENE_ASSOCIATION: (b3605 or (b0306 and b0307 and b0308)) SUBSYSTEM: Oxidative Phosphorylation EC Number: 1.1.2.3
reactant: 547247
kinetic law: 547296
name: L-Lactate dehydrogenase (menaquinone)
product: 547284
fast: false
reactant: 547259

590751
units: 456180
value: 0.0
type: LocalParameter

545922
stoichiometry: 1.0
species: 573959
type: SpeciesReference

575118
stoichiometry: 1.0
species: 575824
type: SpeciesReference

578073
notes: FORMULA: C9H11NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Phenylalanine
type: Species

594074
units: 456180
value: 0.0
type: LocalParameter

595211
units: 456180
value: 0.0
type: LocalParameter

588926
units: 456180
value: 1000.0
type: LocalParameter

507783
stoichiometry: 1.0
species: 574635
type: SpeciesReference

583387
units: 456180
value: 0.0
type: LocalParameter

495336
stoichiometry: 1.0
species: 575648
type: SpeciesReference

590137
units: 456180
value: 0.0
type: LocalParameter

579223
notes: GENE_ASSOCIATION: b0930 SUBSYSTEM: tRNA Charging EC Number: 6.1.1.22
reactant: 490452
fast: false
type: Reaction
reactant: 490464
name: Asparaginyl-tRNA synthetase
product: 490500
reversible: false
product: 490476
product: 490488
kinetic law: 490512
reactant: 490440

578072
notes: FORMULA: C42H77O13P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerophosphate (dioctadec-11-enoyl, n-C18:1)
type: Species

519602
stoichiometry: 1.0
species: 575090
type: SpeciesReference

565662
stoichiometry: 1.0
species: 575090
type: SpeciesReference

582611
units: 456180
value: 0.0
type: LocalParameter

591925
units: 456180
value: 0.0
type: LocalParameter

612709
stoichiometry: 1.0
species: 577892
type: SpeciesReference

538257
stoichiometry: 1.0
species: 577035
type: SpeciesReference

475188
stoichiometry: 2.0
species: 575090
type: SpeciesReference

580417
product: 547334
name: L-lactate reversible transport via proton symport (periplasm)
notes: GENE_ASSOCIATION: (b3603 or b2975) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 547309
reactant: 547322
fast: false
product: 547347
type: Reaction
reversible: true
kinetic law: 547359

520899
stoichiometry: 1.0
species: 574239
type: SpeciesReference

518808
stoichiometry: 1.0
species: 575764
type: SpeciesReference

593670
units: 456180
value: 0.0
type: LocalParameter

613941
stoichiometry: 3.0
species: 575525
type: SpeciesReference

546796
stoichiometry: 1.0
species: 574335
type: SpeciesReference

489265
stoichiometry: 1.0
species: 575090
type: SpeciesReference

535213
stoichiometry: 1.0
species: 577887
type: SpeciesReference

591700
units: 456180
value: 0.0
type: LocalParameter

582612
units: 456180
value: 0.0
type: LocalParameter

591926
units: 456180
value: 0.0
type: LocalParameter

580418
kinetic law: 547395
product: 547383
reactant: 547371
notes: GENE_ASSOCIATION: (b0929 or b1377 or b2215 or b0241) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-lactate transport via diffusion (extracellular to periplasm)
type: Reaction

479773
stoichiometry: 1.0
species: 575534
type: SpeciesReference

515661
stoichiometry: 1.0
species: 575785
type: SpeciesReference

622362
stoichiometry: 1.0
species: 575090
type: SpeciesReference

587719
units: 456180
value: 0.0
type: LocalParameter

595214
units: 456180
value: 1000.0
type: LocalParameter

579225
product: 490598
product: 490586
reversible: false
fast: false
reactant: 490525
type: Reaction
product: 490562
product: 490574
name: L-asparagine transport via ABC system (periplasm)
reactant: 490550
kinetic law: 490611
reactant: 490538
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:

578070
notes: FORMULA: C42H81O13P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerophosphate (dioctadecanoyl, n-C18:0)
type: Species

593673
units: 456180
value: 0.0
type: LocalParameter

580419
notes: GENE_ASSOCIATION: b2257 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
reactant: 547407
reactant: 547419
kinetic law: 547455
product: 547431
reversible: false
type: Reaction
name: 4-amino-4-deoxy-L-arabinotransferase (LPS lipid A modification, periplasmic face of membrane))
fast: false
product: 547443

591927
units: 456180
value: -1000.0
type: LocalParameter

591701
units: 456180
value: 1000.0
type: LocalParameter

582613
units: 456180
value: 0.0
type: LocalParameter

601178
stoichiometry: 1.0
species: 575519
type: SpeciesReference

590134
units: 456180
value: 1000.0
type: LocalParameter

587716
units: 456180
value: 0.0
type: LocalParameter

595217
units: 456180
value: 0.0
type: LocalParameter

579226
reversible: true
fast: false
kinetic law: 490671
type: Reaction
reactant: 490635
name: L-asparagine reversible transport via proton symport (periplasm)
notes: GENE_ASSOCIATION: b1453 SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 490647
reactant: 490623
product: 490659

504051
stoichiometry: 1.0
species: 575920
type: SpeciesReference

594070
units: 456180
value: 0.0
type: LocalParameter

582614
units: 456180
value: 1000.0
type: LocalParameter

590133
units: 456180
value: 0.0
type: LocalParameter

587717
units: 456180
value: 1000.0
type: LocalParameter

593671
units: 456180
value: 1000.0
type: LocalParameter

595216
units: 456180
value: 0.0
type: LocalParameter

500797
stoichiometry: 1.0
species: 574187
type: SpeciesReference

506194
stoichiometry: 1.0
species: 575099
type: SpeciesReference

554831
stoichiometry: 1.0
species: 574187
type: SpeciesReference

482726
stoichiometry: 1.0
species: 574259
type: SpeciesReference

511050
stoichiometry: 1.0
species: 574239
type: SpeciesReference

496930
stoichiometry: 1.0
species: 574466
type: SpeciesReference

470663
stoichiometry: 1.0
species: 575519
type: SpeciesReference

585655
units: 456180
value: 0.0
type: LocalParameter

590132
units: 456180
value: 0.0
type: LocalParameter

586337
units: 456180
value: 0.0
type: LocalParameter

574746
stoichiometry: 1.0
species: 578033
type: SpeciesReference

579457
product: 502094
reactant: 502046
name: Cyanide sulfurtransferase (periplasmic)
product: 502070
type: Reaction
reactant: 502058
fast: false
reversible: false
notes: GENE_ASSOCIATION: b1308 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number: 2.8.1.1
kinetic law: 502106
product: 502082

581256
kinetic law: 600710
product: 600698
reactant: 600685
notes: GENE_ASSOCIATION: (b3380 or b4383) SUBSYSTEM: Alternate Carbon Metabolism EC Number: 5.4.2.7
fast: false
reversible: true
name: phosphopentomutase
type: Reaction

538743
stoichiometry: 1.0
species: 577050
type: SpeciesReference

592438
units: 456180
value: 0.0
type: LocalParameter

590548
units: 456180
value: -1000.0
type: LocalParameter

506802
stoichiometry: 1.0
species: 576775
type: SpeciesReference

516364
stoichiometry: 1.0
species: 574584
type: SpeciesReference

542826
stoichiometry: 1.0
species: 574187
type: SpeciesReference

528488
stoichiometry: 1.0
species: 574862
type: SpeciesReference

491649
stoichiometry: 1.0
species: 574363
type: SpeciesReference

590334
units: 456180
value: 0.0
type: LocalParameter

583382
units: 456180
value: 0.0
type: LocalParameter

602762
stoichiometry: 1.0
species: 577299
type: SpeciesReference

590131
units: 456180
value: 0.0
type: LocalParameter

574745
notes: FORMULA: C19H31N2O10PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Enoylpimeloyl-[acyl-carrier protein] methyl ester
type: Species

587293
units: 456180
value: 0.0
type: LocalParameter

586335
units: 456180
value: 0.0
type: LocalParameter

581255
kinetic law: 600673
name: polyphosphate kinase
reactant: 600637
reversible: true
notes: GENE_ASSOCIATION: b2501 SUBSYSTEM: Oxidative Phosphorylation EC Number: 2.7.4.1
reactant: 600624
fast: false
type: Reaction
product: 600661
product: 600649

579458
kinetic law: 502143
product: 502130
reactant: 502118
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: Cyanide transport via diffusion (extracellular to periplasm)
type: Reaction

536886
stoichiometry: 1.0
species: 574841
type: SpeciesReference

590547
units: 456180
value: 0.0
type: LocalParameter

590130
units: 456180
value: 1000.0
type: LocalParameter

495007
stoichiometry: 1.0
species: 575099
type: SpeciesReference

583381
units: 456180
value: 0.0
type: LocalParameter

590333
units: 456180
value: 0.0
type: LocalParameter

500362
stoichiometry: 1.0
species: 575785
type: SpeciesReference

574748
notes: FORMULA: C2H8NO CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Ethanolamine
type: Species

473540
stoichiometry: 1.0
species: 575099
type: SpeciesReference

522940
stoichiometry: 2.0
species: 573971
type: SpeciesReference

586339
units: 456180
value: 1000.0
type: LocalParameter

581031
reactant: 575847
kinetic law: 576257
product: 576233
fast: false
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
name: Phosphatidate phosphatase (n-C16:1)
type: Reaction
reversible: false
product: 576245
reactant: 575859

585657
units: 456180
value: 0.0
type: LocalParameter

587290
units: 456180
value: 1000.0
type: LocalParameter

590546
units: 456180
value: 0.0
type: LocalParameter

581258
kinetic law: 600746
product: 600734
reactant: 600722
notes: GENE_ASSOCIATION: b4383 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 5.4.2.7
fast: false
reversible: true
name: phosphopentomutase 2 (deoxyribose)
type: Reaction

579459
notes: GENE_ASSOCIATION: b0340 SUBSYSTEM: Nitrogen Metabolism EC Number:
reactant: 502155
reactant: 502179
product: 502191
reactant: 502167
type: Reaction
fast: false
kinetic law: 502215
name: Cyanate aminohydrolase
product: 502203
reversible: false

592436
units: 456180
value: 0.0
type: LocalParameter

543397
stoichiometry: 1.0
species: 575255
type: SpeciesReference

531730
stoichiometry: 1.0
species: 575785
type: SpeciesReference

586338
units: 456180
value: 0.0
type: LocalParameter

585658
units: 456180
value: 0.0
type: LocalParameter

587291
units: 456180
value: 0.0
type: LocalParameter

581030
fast: false
reactant: 575799
name: Phosphatidate phosphatase (periplasmic, n-C16:0)
reversible: false
product: 575811
kinetic law: 575835
product: 575823
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
reactant: 575787
type: Reaction

581900
units: 456180
value: 0.0
type: LocalParameter

581257
stoichiometry: 1.0
species: 575522
type: SpeciesReference

617803
stoichiometry: 1.0
species: 575090
type: SpeciesReference

582840
units: 456180
value: 0.0
type: LocalParameter

563258
stoichiometry: 1.0
species: 577995
type: SpeciesReference

590331
units: 456180
value: 0.0
type: LocalParameter

592437
units: 456180
value: 0.0
type: LocalParameter

590759
units: 456180
value: 1000.0
type: LocalParameter

581033
reactant: 576269
kinetic law: 576317
fast: false
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
reversible: false
type: Reaction
reactant: 576281
product: 576305
product: 576293
name: Phosphatidate phosphatase (periplasmic, n-C16:1)

618044
stoichiometry: 1.0
species: 574883
type: SpeciesReference

608801
stoichiometry: 1.0
species: 576091
type: SpeciesReference

590330
units: 456180
value: 1000.0
type: LocalParameter

590544
units: 456180
value: 1000.0
type: LocalParameter

583386
units: 456180
value: 0.0
type: LocalParameter

601804
stoichiometry: 1.0
species: 574239
type: SpeciesReference

582841
units: 456180
value: 1000.0
type: LocalParameter

586332
units: 456180
value: -1000.0
type: LocalParameter

581903
units: 456180
value: 0.0
type: LocalParameter

581034
reversible: false
reactant: 576329
product: 576353
type: Reaction
fast: false
reactant: 576341
name: Phosphatidate phosphatase (n-C18:0)
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
product: 576365
kinetic law: 576377

579453
reactant: 501888
reversible: false
product: 501900
fast: false
kinetic law: 501924
name: copper transport out via proton antiport
notes: GENE_ASSOCIATION: (b0572 and b0573 and b0574 and b0575) SUBSYSTEM: Transport, Outer Membrane EC Number:
type: Reaction
product: 501912
reactant: 501876

585650
units: 456180
value: 0.0
type: LocalParameter

501742
stoichiometry: 1.0
species: 574239
type: SpeciesReference

517081
stoichiometry: 1.0
species: 574561
type: SpeciesReference

590543
units: 456180
value: 0.0
type: LocalParameter

583385
units: 456180
value: 0.0
type: LocalParameter

558527
stoichiometry: 1.0
species: 575099
type: SpeciesReference

593678
units: 456180
value: 0.0
type: LocalParameter

590757
units: 456180
value: -1000.0
type: LocalParameter

547383
stoichiometry: 1.0
species: 577920
type: SpeciesReference

581902
units: 456180
value: 1000.0
type: LocalParameter

585651
units: 456180
value: 0.0
type: LocalParameter

581259
reversible: false
fast: false
kinetic law: 600842
reactant: 600782
product: 600806
reactant: 600770
product: 600818
product: 600794
type: Reaction
product: 600830
notes: GENE_ASSOCIATION: b3639 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 6.3.2.5
name: phosphopantothenate-cysteine ligase
reactant: 600758

586331
units: 456180
value: 0.0
type: LocalParameter

579454
kinetic law: 501961
product: 501949
reactant: 501936
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: copper (Cu+1) transport via diffusion (extracellular to periplasm)
type: Reaction

456960
stoichiometry: 2.23E-4
species: 575441
type: SpeciesReference

557102
stoichiometry: 1.0
species: 577974
type: SpeciesReference

578079
notes: FORMULA: C9H16NO5 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: (R)-Pantothenate
type: Species

536450
stoichiometry: 1.0
species: 575030
type: SpeciesReference

477227
stoichiometry: 1.0
species: 575099
type: SpeciesReference

572124
stoichiometry: 1.0
species: 573926
type: SpeciesReference

590756
units: 456180
value: 0.0
type: LocalParameter

458961
stoichiometry: 1.0
species: 576529
type: SpeciesReference

592432
units: 456180
value: 0.0
type: LocalParameter

582843
units: 456180
value: 0.0
type: LocalParameter

590542
units: 456180
value: 0.0
type: LocalParameter

599861
stoichiometry: 1.0
species: 575099
type: SpeciesReference

585652
units: 456180
value: 0.0
type: LocalParameter

579455
reactant: 501986
reactant: 501974
reversible: false
product: 502022
fast: false
type: Reaction
product: 502010
name: Cyanide sulfurtransferase
product: 501998
kinetic law: 502034
notes: GENE_ASSOCIATION: b3425 SUBSYSTEM: Unassigned EC Number: 2.8.1.1

581905
units: 456180
value: 0.0
type: LocalParameter

581036
reactant: 576389
product: 576425
fast: false
reversible: false
name: Phosphatidate phosphatase (periplasmic, n-C18:0)
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
product: 576413
reactant: 576401
type: Reaction
kinetic law: 576437

586334
units: 456180
value: 1000.0
type: LocalParameter

464900
stoichiometry: 1.0
species: 577296
type: SpeciesReference

505421
stoichiometry: 1.0
species: 575824
type: SpeciesReference

481403
stoichiometry: 1.0
species: 577676
type: SpeciesReference

553918
stoichiometry: 1.0
species: 575342
type: SpeciesReference

585654
units: 456180
value: 1000.0
type: LocalParameter

611487
stoichiometry: 1.0
species: 575998
type: SpeciesReference

602990
stoichiometry: 1.0
species: 575881
type: SpeciesReference

614834
stoichiometry: 1.0
species: 574694
type: SpeciesReference

613459
stoichiometry: 1.0
species: 577935
type: SpeciesReference

592433
units: 456180
value: 1000.0
type: LocalParameter

583383
units: 456180
value: 1000.0
type: LocalParameter

590755
units: 456180
value: 0.0
type: LocalParameter

506946
stoichiometry: 1.0
species: 575099
type: SpeciesReference

582844
units: 456180
value: 0.0
type: LocalParameter

623610
stoichiometry: 1.0
species: 576403
type: SpeciesReference

578077
stoichiometry: 1.0
species: 574373
type: SpeciesReference

581906
units: 456180
value: 0.0
type: LocalParameter

581037
name: Phosphatidate phosphatase (n-C18:1)
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
product: 576474
kinetic law: 576539
reactant: 576449
fast: false
product: 576527
reactant: 576462
reversible: false
type: Reaction

508938
stoichiometry: 1.0
species: 575785
type: SpeciesReference

590551
units: 456180
value: 0.0
type: LocalParameter

579450
kinetic law: 501828
product: 501816
reactant: 501804
notes: GENE_ASSOCIATION: (b2215 or b0241 or b0929 or b1377) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: copper (Cu+2) transport via diffusion (extracellular to periplasm)
type: Reaction

538960
stoichiometry: 1.0
species: 577893
type: SpeciesReference

582834
units: 456180
value: 0.0
type: LocalParameter

602544
stoichiometry: 1.0
species: 578088
type: SpeciesReference

500097
stoichiometry: 1.0
species: 574502
type: SpeciesReference

531510
stoichiometry: 1.0
species: 576978
type: SpeciesReference

586768
units: 456180
value: 1000.0
type: LocalParameter

481833
stoichiometry: 1.0
species: 574297
type: SpeciesReference

586052
units: 456180
value: 0.0
type: LocalParameter

611033
stoichiometry: 1.0
species: 577994
type: SpeciesReference

586340
stoichiometry: 1.0
species: 575737
type: SpeciesReference

581907
units: 456180
value: 1000.0
type: LocalParameter

575818
notes: FORMULA: C10H11N5O17P4 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Guanosine 3',5'-bis(diphosphate)
type: Species

607856
stoichiometry: 1.0
species: 574435
type: SpeciesReference

582833
units: 456180
value: 0.0
type: LocalParameter

586053
units: 456180
value: 1000.0
type: LocalParameter

540618
stoichiometry: 1.0
species: 575090
type: SpeciesReference

520220
stoichiometry: 2.0
species: 574790
type: SpeciesReference

470881
stoichiometry: 1.0
species: 573963
type: SpeciesReference

590327
units: 456180
value: 0.0
type: LocalParameter

581039
name: Phosphatidate phosphatase (periplasmic, n-C18:1)
reversible: false
kinetic law: 576599
reactant: 576551
product: 576575
type: Reaction
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
fast: false
reactant: 576563
product: 576587

582836
units: 456180
value: 1000.0
type: LocalParameter

465117
stoichiometry: 1.0
species: 577323
type: SpeciesReference

586341
units: 456180
value: 0.0
type: LocalParameter

590977
units: 456180
value: 0.0
type: LocalParameter

587299
units: 456180
value: 0.0
type: LocalParameter

477448
stoichiometry: 1.0
species: 575711
type: SpeciesReference

489955
stoichiometry: 1.0
species: 575099
type: SpeciesReference

590328
units: 456180
value: 0.0
type: LocalParameter

586342
units: 456180
value: 0.0
type: LocalParameter

469785
stoichiometry: 1.0
species: 576514
type: SpeciesReference

579451
kinetic law: 501864
product: 501852
reactant: 501840
notes: GENE_ASSOCIATION: b3040 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
reversible: false
name: copper transport in via permease (no H+)
type: Reaction

564416
stoichiometry: 1.0
species: 574373
type: SpeciesReference

590978
units: 456180
value: -1000.0
type: LocalParameter

590550
units: 456180
value: 1000.0
type: LocalParameter

520437
stoichiometry: 1.0
species: 575965
type: SpeciesReference

587298
units: 456180
value: 0.0
type: LocalParameter

468804
stoichiometry: 1.0
species: 573858
type: SpeciesReference

459261
stoichiometry: 1.0
species: 576565
type: SpeciesReference

586055
units: 456180
value: 0.0
type: LocalParameter

511279
stoichiometry: 1.0
species: 575090
type: SpeciesReference

581909
units: 456180
value: 0.0
type: LocalParameter

502840
stoichiometry: 1.0
species: 574295
type: SpeciesReference

609200
stoichiometry: 4.0
species: 575090
type: SpeciesReference

558745
stoichiometry: 1.0
species: 577179
type: SpeciesReference

578297
kinetic law: 460116
reactant: 460104
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Butyrate (n-C4:0) exchange
type: Reaction

586763
units: 456180
value: 1000.0
type: LocalParameter

531912
stoichiometry: 1.0
species: 575785
type: SpeciesReference

581250
reversible: false
reactant: 600455
notes: GENE_ASSOCIATION: b2920 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
name: Propanoyl-CoA: succinate CoA-transferase
fast: false
product: 600479
kinetic law: 600491
reactant: 600443
product: 600467
type: Reaction

587297
units: 456180
value: 0.0
type: LocalParameter

615185
stoichiometry: 1.0
species: 574679
type: SpeciesReference

586764
units: 456180
value: 0.0
type: LocalParameter

530359
stoichiometry: 1.0
species: 575923
type: SpeciesReference

590976
units: 456180
value: 0.0
type: LocalParameter

507564
stoichiometry: 1.0
species: 575090
type: SpeciesReference

582837
units: 456180
value: 0.0
type: LocalParameter

578298
kinetic law: 460140
reactant: 460128
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: butanesulfonate exchange
type: Reaction

583390
units: 456180
value: 0.0
type: LocalParameter

590326
units: 456180
value: 0.0
type: LocalParameter

585659
units: 456180
value: 1000.0
type: LocalParameter

574742
notes: FORMULA: C30H27N3O15 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Enterochelin
type: Species

476708
stoichiometry: 1.0
species: 575090
type: SpeciesReference

586765
stoichiometry: 1.0
species: 575785
type: SpeciesReference

618336
stoichiometry: 1.0
species: 575920
type: SpeciesReference

590323
units: 456180
value: 0.0
type: LocalParameter

578295
kinetic law: 460092
reactant: 460080
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Biotin exchange
type: Reaction

565237
stoichiometry: 1.0
species: 577997
type: SpeciesReference

590973
units: 456180
value: 0.0
type: LocalParameter

592429
units: 456180
value: 0.0
type: LocalParameter

492338
stoichiometry: 1.0
species: 575785
type: SpeciesReference

581252
reversible: false
product: 600540
fast: false
notes: GENE_ASSOCIATION: b3650 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 3.1.7.2
product: 600528
reactant: 600504
type: Reaction
kinetic law: 600552
reactant: 600516
name: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase

587295
units: 456180
value: 1000.0
type: LocalParameter

543665
stoichiometry: 1.0
species: 573894
type: SpeciesReference

586766
units: 456180
value: 0.0
type: LocalParameter

590324
units: 456180
value: 1000.0
type: LocalParameter

582839
units: 456180
value: 0.0
type: LocalParameter

513929
stoichiometry: 1.0
species: 577887
type: SpeciesReference

592428
units: 456180
value: 1000.0
type: LocalParameter

590974
units: 456180
value: 1000.0
type: LocalParameter

586051
units: 456180
value: 0.0
type: LocalParameter

587294
units: 456180
value: -1000.0
type: LocalParameter

581253
product: 600588
kinetic law: 600612
type: Reaction
reversible: true
product: 600600
notes: GENE_ASSOCIATION: b2501 SUBSYSTEM: Oxidative Phosphorylation EC Number: 2.7.4.1
fast: false
reactant: 600564
name: polyphosphate kinase
reactant: 600576

501029
stoichiometry: 1.0
species: 577736
type: SpeciesReference

586767
units: 456180
value: 0.0
type: LocalParameter

499794
stoichiometry: 2.0
species: 575099
type: SpeciesReference

530142
stoichiometry: 1.0
species: 576169
type: SpeciesReference

496714
stoichiometry: 1.0
species: 574096
type: SpeciesReference

560979
stoichiometry: 1.0
species: 575450
type: SpeciesReference

544560
stoichiometry: 1.0
species: 574022
type: SpeciesReference

595218
units: 456180
value: 0.0
type: LocalParameter

594069
units: 456180
value: 0.0
type: LocalParameter

487006
stoichiometry: 1.0
species: 574136
type: SpeciesReference

587715
units: 456180
value: 0.0
type: LocalParameter

591922
units: 456180
value: 1000.0
type: LocalParameter

488684
stoichiometry: 1.0
species: 575090
type: SpeciesReference

462617
stoichiometry: 1.0
species: 577014
type: SpeciesReference

582604
units: 456180
value: 0.0
type: LocalParameter

575811
stoichiometry: 1.0
species: 577494
type: SpeciesReference

595219
units: 456180
value: 1000.0
type: LocalParameter

588920
units: 456180
value: 1000.0
type: LocalParameter

520014
stoichiometry: 1.0
species: 573812
type: SpeciesReference

590972
units: 456180
value: 0.0
type: LocalParameter

591921
units: 456180
value: -1000.0
type: LocalParameter

602216
stoichiometry: 1.0
species: 575785
type: SpeciesReference

582603
units: 456180
value: 0.0
type: LocalParameter

594067
units: 456180
value: 1000.0
type: LocalParameter

579009
reversible: true
kinetic law: 480050
fast: false
type: Reaction
product: 480026
name: adentylate kinase (ITP)
reactant: 480002
product: 480038
reactant: 480014
notes: GENE_ASSOCIATION: b0474 SUBSYSTEM: Nucleotide Salvage Pathway EC Number:

578294
kinetic law: 460068
reactant: 460056
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: L-Aspartate exchange
type: Reaction

586760
units: 456180
value: 0.0
type: LocalParameter

557479
stoichiometry: 1.0
species: 575483
type: SpeciesReference

568366
stoichiometry: 1.0
species: 577673
type: SpeciesReference

587713
units: 456180
value: 0.0
type: LocalParameter

481367
stoichiometry: 1.0
species: 574195
type: SpeciesReference

472164
stoichiometry: 1.0
species: 575090
type: SpeciesReference

605510
stoichiometry: 1.0
species: 577311
type: SpeciesReference

545704
stoichiometry: 1.0
species: 575096
type: SpeciesReference

578291
kinetic law: 460020
reactant: 460008
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: L-Asparagine exchange
type: Reaction

579222
product: 490392
product: 490416
reactant: 490343
reactant: 490356
product: 490380
product: 490404
type: Reaction
reactant: 490368
reversible: false
kinetic law: 490428
fast: false
notes: GENE_ASSOCIATION: b3744 SUBSYSTEM: Alanine and Aspartate Metabolism EC Number: 6.3.1.1
name: asparagine synthetase

503240
stoichiometry: 2.0
species: 575090
type: SpeciesReference

580420
product: 547491
reactant: 547479
fast: false
notes: GENE_ASSOCIATION: b0344 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 3.2.1.23
kinetic law: 547515
reactant: 547467
name: b-galactosidase
product: 547503
type: Reaction
reversible: false

582606
units: 456180
value: 1000.0
type: LocalParameter

586761
units: 456180
value: 0.0
type: LocalParameter

480461
stoichiometry: 1.0
species: 574233
type: SpeciesReference

575120
notes: FORMULA: C16H29O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hexadecenoate (n-C16:1)
type: Species

557690
stoichiometry: 1.0
species: 575090
type: SpeciesReference

587712
units: 456180
value: 1000.0
type: LocalParameter

590970
units: 456180
value: 0.0
type: LocalParameter

579221
product: 490271
product: 490307
reversible: false
reactant: 490235
type: Reaction
reactant: 490247
name: asparagine synthase (glutamine-hydrolysing)
product: 490283
product: 490319
reactant: 490223
fast: false
reactant: 490259
kinetic law: 490331
notes: GENE_ASSOCIATION: b0674 SUBSYSTEM: Alanine and Aspartate Metabolism EC Number: 6.3.5.4
product: 490295

575812
notes: FORMULA: C10H13N2O4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Porphobilinogen
type: Species

609430
stoichiometry: 1.0
species: 574333
type: SpeciesReference

578292
kinetic law: 460044
reactant: 460032
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: arsenite exchange
type: Reaction

595430
units: 456180
value: 1000.0
type: LocalParameter

582605
units: 456180
value: 0.0
type: LocalParameter

575123
notes: FORMULA: C16H30O5P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hexadecanoyl-phosphate (n-C16:1)
type: Species

624441
stoichiometry: 1.0
species: 575522
type: SpeciesReference

495556
stoichiometry: 1.0
species: 575657
type: SpeciesReference

586056
units: 456180
value: 0.0
type: LocalParameter

488842
stoichiometry: 1.0
species: 575711
type: SpeciesReference

588924
units: 456180
value: 0.0
type: LocalParameter

575815
notes: FORMULA: C24H36N7O17P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Propanoyl-CoA
type: Species

527363
stoichiometry: 2.0
species: 575785
type: SpeciesReference

579006
kinetic law: 479929
product: 479917
reactant: 479905
reactant: 479893
notes: GENE_ASSOCIATION: b0474 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 2.7.4.3
fast: false
reversible: true
name: adenylate kinase
type: Reaction

582608
units: 456180
value: 0.0
type: LocalParameter

518458
stoichiometry: 1.0
species: 574778
type: SpeciesReference

580422
name: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate hydrolase
notes: GENE_ASSOCIATION: b1326 SUBSYSTEM: Murein Recycling EC Number:
reactant: 547589
reversible: false
product: 547613
product: 547626
reactant: 547601
fast: false
kinetic law: 547638
type: Reaction

521711
stoichiometry: 1.0
species: 574823
type: SpeciesReference

594064
stoichiometry: 1.0
species: 578076
type: SpeciesReference

487600
stoichiometry: 2.0
species: 575090
type: SpeciesReference

591708
units: 456180
value: 0.0
type: LocalParameter

458534
stoichiometry: 53.945662
species: 575785
type: SpeciesReference

587710
units: 456180
value: 0.0
type: LocalParameter

539371
stoichiometry: 1.0
species: 575522
type: SpeciesReference

595433
units: 456180
value: 0.0
type: LocalParameter

586057
units: 456180
value: 0.0
type: LocalParameter

580421
product: 547565
product: 547553
reactant: 547541
fast: false
reactant: 547528
notes: GENE_ASSOCIATION: b2132 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 3.2.1.108
type: Reaction
name: b-galactosidase
kinetic law: 547577
reversible: false

582607
units: 456180
value: 0.0
type: LocalParameter

595432
units: 456180
value: 0.0
type: LocalParameter

594063
units: 456180
value: 0.0
type: LocalParameter

579005
kinetic law: 479881
product: 479869
reactant: 479857
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: adenine transport via diffusion (extracellular to periplasm)
type: Reaction

591707
units: 456180
value: 1000.0
type: LocalParameter

509603
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species: 574664
type: SpeciesReference

500579
stoichiometry: 1.0
species: 577733
type: SpeciesReference

482508
stoichiometry: 1.0
species: 574193
type: SpeciesReference

601395
stoichiometry: 1.0
species: 577890
type: SpeciesReference

595434
units: 456180
value: 0.0
type: LocalParameter

474509
stoichiometry: 1.0
species: 575824
type: SpeciesReference

559902
stoichiometry: 1.0
species: 577890
type: SpeciesReference

580424
kinetic law: 547674
product: 547662
reactant: 547650
notes: GENE_ASSOCIATION: (b2215 or b1377 or b0241 or b0929) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-alanyl-D-glutamate transport via diffusion (extracellular to periplasm)
type: Reaction

551022
stoichiometry: 1.0
species: 578150
type: SpeciesReference

591920
units: 456180
value: 0.0
type: LocalParameter

594066
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value: 0.0
type: LocalParameter

588922
units: 456180
value: 0.0
type: LocalParameter

457583
stoichiometry: 0.004892
species: 578054
type: SpeciesReference

512658
stoichiometry: 1.0
species: 576214
type: SpeciesReference

488262
stoichiometry: 2.0
species: 574345
type: SpeciesReference

522429
stoichiometry: 1.0
species: 577887
type: SpeciesReference

561776
stoichiometry: 1.0
species: 575468
type: SpeciesReference

554149
stoichiometry: 1.0
species: 575342
type: SpeciesReference

623077
stoichiometry: 1.0
species: 575800
type: SpeciesReference

622141
stoichiometry: 1.0
species: 575099
type: SpeciesReference

586059
units: 456180
value: 1000.0
type: LocalParameter

607155
stoichiometry: 1.0
species: 575111
type: SpeciesReference

573515
stoichiometry: 1.0
species: 574066
type: SpeciesReference

582609
units: 456180
value: 0.0
type: LocalParameter

579007
reactant: 479954
type: Reaction
fast: false
reactant: 479941
notes: GENE_ASSOCIATION: b0474 SUBSYSTEM: Nucleotide Salvage Pathway EC Number:
product: 479978
name: adentylate kinase (GTP)
product: 479966
kinetic law: 479990
reversible: true

588923
units: 456180
value: 0.0
type: LocalParameter

594065
units: 456180
value: 0.0
type: LocalParameter

593689
units: 456180
value: 0.0
type: LocalParameter

507796
stoichiometry: 1.0
species: 574991
type: SpeciesReference

579015
product: 480340
fast: false
name: adenosine transport in via proton symport (periplasm)
product: 480328
reversible: false
notes: GENE_ASSOCIATION: (b2964 or b2393) SUBSYSTEM: Transport, Inner Membrane EC Number:
kinetic law: 480353
reactant: 480316
type: Reaction
reactant: 480304

465864
stoichiometry: 1.0
species: 577416
type: SpeciesReference

580403
reactant: 546613
reactant: 546601
type: Reaction
reactant: 546589
product: 546625
product: 546638
fast: false
kinetic law: 546662
reversible: false
notes: GENE_ASSOCIATION: b1091 SUBSYSTEM: Membrane Lipid Metabolism EC Number:
product: 546650
name: beta-ketoacyl-ACP synthase (2)

582621
units: 456180
value: 0.0
type: LocalParameter

590764
units: 456180
value: 1000.0
type: LocalParameter

597585
stoichiometry: 1.0
species: 577887
type: SpeciesReference

575105
notes: FORMULA: H2S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hydrogen sulfide
type: Species

590126
units: 456180
value: 0.0
type: LocalParameter

595225
units: 456180
value: 0.0
type: LocalParameter

612079
stoichiometry: 1.0
species: 575090
type: SpeciesReference

587708
units: 456180
value: 0.0
type: LocalParameter

580096
reversible: false
product: 532446
reactant: 532434
name: glutaminase
fast: false
notes: GENE_ASSOCIATION: (b1812 or b0485 or b1524) SUBSYSTEM: Glutamate Metabolism EC Number: 3.5.1.2
type: Reaction
reactant: 532422
kinetic law: 532470
product: 532458

465551
stoichiometry: 1.0
species: 577377
type: SpeciesReference

466796
stoichiometry: 1.0
species: 573776
type: SpeciesReference

592441
units: 456180
value: 1000.0
type: LocalParameter

578061
notes: FORMULA: C34H65O13P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerophosphate (ditetradecanoyl, n-C14:0)
type: Species

593688
units: 456180
value: 1000.0
type: LocalParameter

595223
units: 456180
value: 0.0
type: LocalParameter

588938
units: 456180
value: 0.0
type: LocalParameter

611899
stoichiometry: 1.0
species: 578117
type: SpeciesReference

594062
units: 456180
value: 1000.0
type: LocalParameter

585661
units: 456180
value: 0.0
type: LocalParameter

580404
notes: GENE_ASSOCIATION: b0918 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number: 2.7.7.38
reactant: 546686
reversible: false
type: Reaction
product: 546710
reactant: 546674
product: 546698
kinetic law: 546722
name: 3-deoxy-manno-octulosonate cytidylyltransferase
fast: false

575106
stoichiometry: 1.0
species: 575758
type: SpeciesReference

530975
stoichiometry: 1.0
species: 574886
type: SpeciesReference

590763
units: 456180
value: -1000.0
type: LocalParameter

582622
units: 456180
value: 1000.0
type: LocalParameter

481137
stoichiometry: 1.0
species: 575785
type: SpeciesReference

587709
units: 456180
value: 0.0
type: LocalParameter

580097
product: 532506
kinetic law: 532530
name: glutaminase
product: 532518
notes: GENE_ASSOCIATION: b2957 SUBSYSTEM: Glutamate Metabolism EC Number: 3.5.1.2
reactant: 532494
reactant: 532482
type: Reaction
reversible: false
fast: false

595224
units: 456180
value: 1000.0
type: LocalParameter

592440
stoichiometry: 1.0
species: 574474
type: SpeciesReference

475743
stoichiometry: 1.0
species: 576148
type: SpeciesReference

580401
reactant: 546455
type: Reaction
reactant: 546442
product: 546467
reversible: true
notes: GENE_ASSOCIATION: b3774 SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism EC Number: 1.1.1.86
reactant: 546430
fast: false
kinetic law: 546491
product: 546479
name: ketol-acid reductoisomerase (2-Acetolactate)

578064
notes: FORMULA: C38H73O13P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerophosphate (dihexadecanoyl, n-C16:0)
type: Species

579013
product: 480219
kinetic law: 480231
reversible: false
fast: false
notes: GENE_ASSOCIATION: b0474 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 2.7.1.20
reactant: 480183
reactant: 480171
name: adenosine kinase
product: 480195
product: 480207
type: Reaction

595222
units: 456180
value: 0.0
type: LocalParameter

579239
reversible: false
notes: GENE_ASSOCIATION: b2574 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 491287
reactant: 491263
reactant: 491275
product: 491311
kinetic law: 491323
name: L-aspartate oxidase
type: Reaction
product: 491299
fast: false

502407
stoichiometry: 1.0
species: 575099
type: SpeciesReference

610653
stoichiometry: 1.0
species: 576016
type: SpeciesReference

590766
units: 456180
value: 0.0
type: LocalParameter

592442
units: 456180
value: 0.0
type: LocalParameter

618771
stoichiometry: 1.0
species: 575090
type: SpeciesReference

591917
units: 456180
value: 1000.0
type: LocalParameter

520692
stoichiometry: 1.0
species: 576882
type: SpeciesReference

484868
stoichiometry: 1.0
species: 575090
type: SpeciesReference

617392
stoichiometry: 1.0
species: 578144
type: SpeciesReference

575102
notes: FORMULA: H2O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hydrogen peroxide
type: Species

590128
units: 456180
value: -1000.0
type: LocalParameter

620764
stoichiometry: 1.0
species: 576355
type: SpeciesReference

568573
stoichiometry: 1.0
species: 575072
type: SpeciesReference

596600
units: 456180
value: 0.0
type: LocalParameter

580098
reactant: 532542
reversible: false
product: 532602
fast: false
type: Reaction
reactant: 532554
notes: GENE_ASSOCIATION: b2312 SUBSYSTEM: Purine and Pyrimidine Biosynthesis EC Number: 2.4.2.14
kinetic law: 532614
product: 532578
reactant: 532566
product: 532590
name: glutamine phosphoribosyldiphosphate amidotransferase

580402
product: 546565
type: Reaction
fast: false
reactant: 546527
kinetic law: 546577
product: 546540
notes: GENE_ASSOCIATION: (b2323 or b1095) SUBSYSTEM: Membrane Lipid Metabolism EC Number: 2.3.1.41
reversible: false
name: beta-ketoacyl-ACP synthase
product: 546552
reactant: 546503
reactant: 546515

578063
notes: FORMULA: C34H61O13P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerophosphate (ditetradec-7-enoyl, n-C14:1)
type: Species

579014
reversible: false
kinetic law: 480292
notes: GENE_ASSOCIATION: b0030 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 3.2.2.8
fast: false
reactant: 480243
reactant: 480256
type: Reaction
name: adenosine hydrolase
product: 480280
product: 480268

593686
units: 456180
value: 0.0
type: LocalParameter

499504
stoichiometry: 1.0
species: 576870
type: SpeciesReference

606466
stoichiometry: 1.0
species: 578103
type: SpeciesReference

582620
units: 456180
value: 0.0
type: LocalParameter

594060
units: 456180
value: -1000.0
type: LocalParameter

472372
stoichiometry: 1.0
species: 574155
type: SpeciesReference

543177
stoichiometry: 1.0
species: 575905
type: SpeciesReference

544330
stoichiometry: 1.0
species: 575090
type: SpeciesReference

554999
stoichiometry: 1.0
species: 577938
type: SpeciesReference

591918
units: 456180
value: 0.0
type: LocalParameter

596601
units: 456180
value: 1000.0
type: LocalParameter

595448
units: 456180
value: 0.0
type: LocalParameter

579011
kinetic law: 480159
product: 480147
product: 480135
reactant: 480122
notes: GENE_ASSOCIATION: b3806 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 4.6.1.1
fast: false
reversible: false
name: adenylate cyclase
type: Reaction

590760
units: 456180
value: 0.0
type: LocalParameter

590538
stoichiometry: 1.0
species: 577890
type: SpeciesReference

580407
fast: false
notes: GENE_ASSOCIATION: b1215 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number: 4.1.2.16
reversible: false
reactant: 546821
product: 546833
name: 3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase
product: 546845
reactant: 546796
kinetic law: 546857
reactant: 546809
type: Reaction

582625
units: 456180
value: 0.0
type: LocalParameter

479905
stoichiometry: 1.0
species: 574373
type: SpeciesReference

593685
units: 456180
value: 0.0
type: LocalParameter

579237
reversible: false
reactant: 491130
product: 491142
product: 491154
name: L-aspartate oxidase
type: Reaction
reactant: 491118
kinetic law: 491178
fast: false
product: 491166
notes: GENE_ASSOCIATION: b2574 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:

587704
units: 456180
value: 0.0
type: LocalParameter

590122
units: 456180
value: 1000.0
type: LocalParameter

590537
units: 456180
value: 0.0
type: LocalParameter

466506
stoichiometry: 1.0
species: 573764
type: SpeciesReference

507371
stoichiometry: 1.0
species: 575099
type: SpeciesReference

512428
stoichiometry: 1.0
species: 575522
type: SpeciesReference

582626
units: 456180
value: 1000.0
type: LocalParameter

593684
units: 456180
value: 0.0
type: LocalParameter

579238
fast: false
product: 491226
notes: GENE_ASSOCIATION: b2574 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
type: Reaction
reversible: false
product: 491238
reactant: 491190
reactant: 491202
product: 491214
name: L-aspartate oxidase
kinetic law: 491251

575821
notes: FORMULA: C10H8O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Prephenate
type: Species

593683
stoichiometry: 1.0
species: 577269
type: SpeciesReference

595228
units: 456180
value: 1000.0
type: LocalParameter

596603
units: 456180
value: 0.0
type: LocalParameter

506182
stoichiometry: 1.0
species: 575090
type: SpeciesReference

482738
stoichiometry: 1.0
species: 574838
type: SpeciesReference

587705
units: 456180
value: 0.0
type: LocalParameter

590121
units: 456180
value: -1000.0
type: LocalParameter

579449
notes: GENE_ASSOCIATION: b3469 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
type: Reaction
reactant: 501706
name: Copper (Cu+2) ABC transporter (periplasm)
product: 501755
fast: false
reactant: 501730
product: 501742
reactant: 501718
kinetic law: 501792
product: 501768
product: 501780
reversible: false

582623
units: 456180
value: 0.0
type: LocalParameter

590762
units: 456180
value: 0.0
type: LocalParameter

614618
stoichiometry: 1.0
species: 574239
type: SpeciesReference

591913
units: 456180
value: 0.0
type: LocalParameter

489252
stoichiometry: 1.0
species: 574347
type: SpeciesReference

565674
stoichiometry: 1.0
species: 575537
type: SpeciesReference

519614
stoichiometry: 1.0
species: 575785
type: SpeciesReference

578060
notes: FORMULA: C30H57O13P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerophosphate (didodecanoyl, n-C12:0)
type: Species

579235
reactant: 491046
product: 491094
product: 491082
notes: GENE_ASSOCIATION: b2574 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
reversible: false
product: 491070
fast: false
name: L-aspartate oxidase
kinetic law: 491106
reactant: 491058
type: Reaction

596604
units: 456180
value: 0.0
type: LocalParameter

593682
units: 456180
value: 1000.0
type: LocalParameter

557466
stoichiometry: 1.0
species: 575486
type: SpeciesReference

595227
units: 456180
value: 0.0
type: LocalParameter

587706
units: 456180
value: 1000.0
type: LocalParameter

582624
units: 456180
value: 0.0
type: LocalParameter

591914
units: 456180
value: -1000.0
type: LocalParameter

590539
units: 456180
value: 1000.0
type: LocalParameter

575108
notes: FORMULA: CHO3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Bicarbonate
type: Species

579010
name: adenosylmethionine decarboxylase
product: 480086
reactant: 480062
product: 480098
type: Reaction
notes: GENE_ASSOCIATION: b0120 SUBSYSTEM: Arginine and Proline Metabolism EC Number: 4.1.1.50
reactant: 480074
kinetic law: 480110
reversible: false
fast: false

580406
name: 3-deoxy-manno-octulosonate-8-phosphatase
reversible: false
reactant: 546747
type: Reaction
product: 546759
kinetic law: 546783
product: 546771
fast: false
notes: GENE_ASSOCIATION: b3198 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number: 3.1.3.45
reactant: 546735

458740
stoichiometry: 1.0
species: 576502
type: SpeciesReference

579236
stoichiometry: 1.0
species: 575702
type: SpeciesReference

535201
stoichiometry: 1.0
species: 577866
type: SpeciesReference

596605
units: 456180
value: 0.0
type: LocalParameter

595226
units: 456180
value: 0.0
type: LocalParameter

593681
units: 456180
value: 0.0
type: LocalParameter

590123
units: 456180
value: 0.0
type: LocalParameter

479761
stoichiometry: 1.0
species: 575198
type: SpeciesReference

622374
stoichiometry: 1.0
species: 575785
type: SpeciesReference

586328
units: 456180
value: 1000.0
type: LocalParameter

586327
units: 456180
value: 0.0
type: LocalParameter

522952
stoichiometry: 2.0
species: 574784
type: SpeciesReference

585669
units: 456180
value: 0.0
type: LocalParameter

460152
stoichiometry: 1.0
species: 576676
type: SpeciesReference

581043
product: 576779
type: Reaction
name: phosphoadenylyl-sulfate reductase (glutaredoxin)
reversible: false
kinetic law: 576828
notes: GENE_ASSOCIATION: ((b2762 and b0849) or (b2762 and b1064) or (b2762 and b1654) or (b2762 and b3610)) SUBSYSTEM: Cysteine Metabolism EC Number: 1.8.4.8
product: 576816
product: 576803
reactant: 576755
reactant: 576767
fast: false
product: 576791

500350
stoichiometry: 1.0
species: 575090
type: SpeciesReference

583392
units: 456180
value: 0.0
type: LocalParameter

564646
stoichiometry: 1.0
species: 575510
type: SpeciesReference

590320
units: 456180
value: 0.0
type: LocalParameter

559105
stoichiometry: 1.0
species: 577176
type: SpeciesReference

579447
reactant: 501621
product: 501645
name: Copper (Cu +1) ABC transporter (periplasm)
kinetic law: 501694
fast: false
reversible: false
reactant: 501633
product: 501658
product: 501670
product: 501682
reactant: 501608
type: Reaction
notes: GENE_ASSOCIATION: b0484 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:

596607
units: 456180
value: 1000.0
type: LocalParameter

513941
stoichiometry: 1.0
species: 578163
type: SpeciesReference

482520
stoichiometry: 1.0
species: 575525
type: SpeciesReference

586326
units: 456180
value: 0.0
type: LocalParameter

581042
type: Reaction
product: 576707
kinetic law: 576743
fast: false
reversible: false
product: 576731
notes: GENE_ASSOCIATION: ((b2762 and b2582) or (b2762 and b3781)) SUBSYSTEM: Cysteine Metabolism EC Number: 1.8.4.8
reactant: 576671
product: 576719
product: 576695
name: phosphoadenylyl-sulfate reductase (thioredoxin)
reactant: 576683

583391
stoichiometry: 1.0
species: 575099
type: SpeciesReference

590533
units: 456180
value: 1000.0
type: LocalParameter

581269
stoichiometry: 1.0
species: 575612
type: SpeciesReference

592449
units: 456180
value: 0.0
type: LocalParameter

590120
units: 456180
value: 0.0
type: LocalParameter

587280
units: 456180
value: 0.0
type: LocalParameter

596608
units: 456180
value: 0.0
type: LocalParameter

496942
stoichiometry: 1.0
species: 574177
type: SpeciesReference

516376
stoichiometry: 1.0
species: 575099
type: SpeciesReference

506814
stoichiometry: 1.0
species: 577758
type: SpeciesReference

491637
stoichiometry: 2.0
species: 577887
type: SpeciesReference

590322
units: 456180
value: 0.0
type: LocalParameter

554843
stoichiometry: 1.0
species: 575366
type: SpeciesReference

583394
units: 456180
value: 1000.0
type: LocalParameter

581268
type: Reaction
notes: GENE_ASSOCIATION: b2536 SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 601239
kinetic law: 601251
fast: false
name: 3-phenylpropionate transport via proton symport, reversible (periplasm)
reversible: true
reactant: 601203
reactant: 601215
product: 601227

510193
stoichiometry: 1.0
species: 577769
type: SpeciesReference

586324
units: 456180
value: 0.0
type: LocalParameter

580409
type: Reaction
reactant: 546882
product: 546907
product: 546895
reversible: false
name: 3-keto-L-gulonate 6-phosphate decarboxylase
reactant: 546870
fast: false
kinetic law: 546919
notes: GENE_ASSOCIATION: (b4196 or b3581) SUBSYSTEM: Alternate Carbon Metabolism EC Number:

579445
kinetic law: 501524
fast: false
reactant: 501428
type: Reaction
product: 501464
product: 501512
reactant: 501452
product: 501488
reactant: 501440
product: 501500
reversible: false
notes: GENE_ASSOCIATION: b2780 SUBSYSTEM: Purine and Pyrimidine Biosynthesis EC Number: 6.3.4.2
reactant: 501416
product: 501476
name: CTP synthase (glutamine)

590536
units: 456180
value: 0.0
type: LocalParameter

585668
units: 456180
value: 0.0
type: LocalParameter

574757
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Fructose 1-phosphate
type: Species

581040
name: phospho-N-acetylmuramoyl-pentapeptide-transferase (meso-2,6-diaminopimelate)
type: Reaction
product: 576635
reactant: 576611
reversible: false
fast: false
notes: GENE_ASSOCIATION: b0087 SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 2.7.8.13
reactant: 576623
product: 576647
kinetic law: 576659

580091
notes: GENE_ASSOCIATION: b1492 SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 532130
reversible: true
kinetic law: 532154
name: 4-aminobutyrate/glutamate antiport (periplasm)
reactant: 532106
fast: false
type: Reaction
reactant: 532118
product: 532142

602774
stoichiometry: 1.0
species: 578091
type: SpeciesReference

590321
stoichiometry: 1.0
species: 575099
type: SpeciesReference

583393
units: 456180
value: 0.0
type: LocalParameter

586323
units: 456180
value: 1000.0
type: LocalParameter

581267
name: Phenylpropanoate Dioxygenase
fast: false
reactant: 601154
type: Reaction
kinetic law: 601191
product: 601178
reactant: 601142
reactant: 601118
notes: GENE_ASSOCIATION: (b2538 and b2539 and b2540 and b2542) SUBSYSTEM: Alternate Carbon Metabolism EC Number:
reversible: false
product: 601166
reactant: 601130

579446
fast: false
reversible: false
type: Reaction
reactant: 501560
product: 501572
reactant: 501548
notes: GENE_ASSOCIATION: b0123 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
product: 501584
kinetic law: 501596
name: Cuprous Oxidase (Cu+1)
reactant: 501536

536898
stoichiometry: 1.0
species: 575824
type: SpeciesReference

590535
units: 456180
value: 0.0
type: LocalParameter

495019
stoichiometry: 1.0
species: 574239
type: SpeciesReference

580092
product: 532215
product: 532227
reactant: 532190
name: gamma-glutamylcysteine synthetase
kinetic law: 532251
product: 532239
type: Reaction
reactant: 532166
notes: GENE_ASSOCIATION: b2688 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 6.3.2.2
reversible: false
product: 532202
reactant: 532178
fast: false

477239
stoichiometry: 1.0
species: 574199
type: SpeciesReference

572136
stoichiometry: 2.0
species: 574373
type: SpeciesReference

585665
units: 456180
value: 1000.0
type: LocalParameter

579443
kinetic law: 501404
product: 501392
reactant: 501380
notes: GENE_ASSOCIATION: b3846 SUBSYSTEM: Membrane Lipid Metabolism EC Number: 5.3.3.8
fast: false
reversible: true
name: 3-cis-2-trans-enoyl-CoA isomerase
type: Reaction

581048
type: Reaction
fast: false
product: 577121
reversible: false
reactant: 577097
reactant: 577085
product: 577109
kinetic law: 577145
name: pyruvate dehydrogenase
notes: GENE_ASSOCIATION: (b0114 and b0115 and b0116) SUBSYSTEM: Glycolysis/Gluconeogenesis EC Number:
product: 577133
reactant: 577073

477460
stoichiometry: 1.0
species: 577649
type: SpeciesReference

592444
units: 456180
value: 0.0
type: LocalParameter

590768
units: 456180
value: -1000.0
type: LocalParameter

583396
units: 456180
value: 0.0
type: LocalParameter

595220
units: 456180
value: 0.0
type: LocalParameter

608668
stoichiometry: 1.0
species: 576106
type: SpeciesReference

614846
stoichiometry: 1.0
species: 574478
type: SpeciesReference

553906
stoichiometry: 1.0
species: 574373
type: SpeciesReference

585666
units: 456180
value: 0.0
type: LocalParameter

611475
stoichiometry: 1.0
species: 574781
type: SpeciesReference

602009
stoichiometry: 1.0
species: 575090
type: SpeciesReference

586321
units: 456180
value: -1000.0
type: LocalParameter

590767
units: 456180
value: 0.0
type: LocalParameter

506934
stoichiometry: 1.0
species: 573806
type: SpeciesReference

582832
units: 456180
value: 0.0
type: LocalParameter

592445
units: 456180
value: 0.0
type: LocalParameter

580094
notes: GENE_ASSOCIATION: (b3517 or b1493) SUBSYSTEM: Glutamate Metabolism EC Number: 4.1.1.15
reversible: false
product: 532287
reactant: 532275
kinetic law: 532311
type: Reaction
reactant: 532263
name: Glutamate Decarboxylase
product: 532299
fast: false

608813
stoichiometry: 2.0
species: 576106
type: SpeciesReference

524780
stoichiometry: 1.0
species: 574239
type: SpeciesReference

618056
stoichiometry: 1.0
species: 574970
type: SpeciesReference

581046
fast: false
type: Reaction
product: 577048
reactant: 576974
product: 576986
kinetic law: 577061
name: 3',5'-cyclic-nucleotide phosphodiesterase
notes: GENE_ASSOCIATION: b1489 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.1.4.17
reactant: 576961
reversible: false

585662
units: 456180
value: 0.0
type: LocalParameter

586320
units: 456180
value: 0.0
type: LocalParameter

592446
units: 456180
value: 1000.0
type: LocalParameter

590532
units: 456180
value: 0.0
type: LocalParameter

579441
kinetic law: 501331
product: 501319
reactant: 501307
notes: GENE_ASSOCIATION: b3846 SUBSYSTEM: Membrane Lipid Metabolism EC Number: 5.3.3.8
fast: false
reversible: true
name: 3-cis-2-trans-enoyl-CoA isomerase
type: Reaction

583398
units: 456180
value: 0.0
type: LocalParameter

474364
stoichiometry: 1.0
species: 574155
type: SpeciesReference

571426
stoichiometry: 1.0
species: 577254
type: SpeciesReference

580095
fast: false
kinetic law: 532409
product: 532360
reactant: 532335
reactant: 532323
notes: GENE_ASSOCIATION: b1761 SUBSYSTEM: Glutamate Metabolism EC Number: 1.4.1.4
name: glutamate dehydrogenase (NADP)
product: 532372
product: 532384
type: Reaction
product: 532397
reactant: 532348
reversible: true

501730
stoichiometry: 1.0
species: 575099
type: SpeciesReference

578067
notes: FORMULA: C38H69O13P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerophosphate (dihexadec-9-enoyl, n-C16:1)
type: Species

579442
kinetic law: 501368
product: 501355
reactant: 501343
notes: GENE_ASSOCIATION: b3846 SUBSYSTEM: Membrane Lipid Metabolism EC Number: 5.3.3.8
fast: false
reversible: true
name: 3-cis-2-trans-enoyl-CoA isomerase
type: Reaction

585663
units: 456180
value: 0.0
type: LocalParameter

581045
product: 576925
type: Reaction
reversible: false
name: 3',5'-cyclic-nucleotide phosphodiesterase
kinetic law: 576949
reactant: 576901
notes: GENE_ASSOCIATION: b1489 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.1.4.17
fast: false
reactant: 576913
product: 576937

583397
units: 456180
value: 0.0
type: LocalParameter

590531
units: 456180
value: 0.0
type: LocalParameter

558515
stoichiometry: 1.0
species: 574373
type: SpeciesReference

582830
units: 456180
value: 1000.0
type: LocalParameter

547371
stoichiometry: 1.0
species: 577113
type: SpeciesReference

590989
units: 456180
value: 0.0
type: LocalParameter

590315
units: 456180
value: 0.0
type: LocalParameter

473998
stoichiometry: 1.0
species: 574335
type: SpeciesReference

470894
stoichiometry: 1.0
species: 574373
type: SpeciesReference

587287
units: 456180
value: 0.0
type: LocalParameter

603931
stoichiometry: 1.0
species: 574443
type: SpeciesReference

586042
units: 456180
value: 1000.0
type: LocalParameter

527798
stoichiometry: 1.0
species: 575090
type: SpeciesReference

582823
units: 456180
value: 0.0
type: LocalParameter

564428
stoichiometry: 1.0
species: 575099
type: SpeciesReference

466081
stoichiometry: 1.0
species: 577443
type: SpeciesReference

578288
kinetic law: 459972
reactant: 459960
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: L-Arginine exchange
type: Reaction

590316
units: 456180
value: 0.0
type: LocalParameter

586330
units: 456180
value: 0.0
type: LocalParameter

469797
stoichiometry: 1.0
species: 577613
type: SpeciesReference

574751
notes: FORMULA: C2H5O3S CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: ethanesulfonate
type: Species

502852
stoichiometry: 1.0
species: 574536
type: SpeciesReference

619558
stoichiometry: 1.0
species: 577892
type: SpeciesReference

599134
stoichiometry: 1.0
species: 578019
type: SpeciesReference

581261
reactant: 600866
type: Reaction
fast: false
name: prephenate dehydrogenase
kinetic law: 600914
product: 600890
product: 600902
product: 600878
reactant: 600854
notes: GENE_ASSOCIATION: b2600 SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism EC Number: 1.3.1.12
reversible: false

511267
stoichiometry: 1.0
species: 574718
type: SpeciesReference

609212
stoichiometry: 1.0
species: 576100
type: SpeciesReference

478531
stoichiometry: 1.0
species: 574215
type: SpeciesReference

587286
units: 456180
value: 0.0
type: LocalParameter

560529
stoichiometry: 1.0
species: 575378
type: SpeciesReference

582822
units: 456180
value: 0.0
type: LocalParameter

581049
kinetic law: 577448
fast: false
type: Reaction
name: pyridoxine 5'-phosphate oxidase (anaerboic
reactant: 577399
reactant: 577157
reversible: false
product: 577424
product: 577412
notes: GENE_ASSOCIATION: SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 577436

578289
kinetic law: 459996
reactant: 459984
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: L-Ascorbate exchange
type: Reaction

590317
units: 456180
value: 0.0
type: LocalParameter

594298
units: 456180
value: 1000.0
type: LocalParameter

481845
stoichiometry: 1.0
species: 575099
type: SpeciesReference

586040
units: 456180
value: 0.0
type: LocalParameter

518240
stoichiometry: 1.0
species: 575525
type: SpeciesReference

602556
stoichiometry: 1.0
species: 575510
type: SpeciesReference

565069
stoichiometry: 1.0
species: 574239
type: SpeciesReference

590540
units: 456180
value: 0.0
type: LocalParameter

582821
units: 456180
value: 0.0
type: LocalParameter

594297
units: 456180
value: 0.0
type: LocalParameter

586041
units: 456180
value: 0.0
type: LocalParameter

611046
stoichiometry: 1.0
species: 578114
type: SpeciesReference

567822
stoichiometry: 1.0
species: 574568
type: SpeciesReference

520232
stoichiometry: 1.0
species: 574763
type: SpeciesReference

587288
units: 456180
value: -1000.0
type: LocalParameter

582828
units: 456180
value: 0.0
type: LocalParameter

582400
units: 456180
value: 1000.0
type: LocalParameter

581265
product: 601082
fast: false
type: Reaction
kinetic law: 601106
reversible: false
notes: GENE_ASSOCIATION: b3850 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 1.3.3.4
reactant: 601070
name: protoporphyrinogen oxidase (anaerobic)
product: 601094
reactant: 601058

590985
units: 456180
value: 1000.0
type: LocalParameter

565225
stoichiometry: 1.0
species: 577218
type: SpeciesReference

484106
stoichiometry: 1.0
species: 574183
type: SpeciesReference

517867
stoichiometry: 1.0
species: 575824
type: SpeciesReference

618348
stoichiometry: 1.0
species: 576226
type: SpeciesReference

526114
stoichiometry: 1.0
species: 575785
type: SpeciesReference

590311
units: 456180
value: 0.0
type: LocalParameter

578283
kinetic law: 459900
reactant: 459888
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Arbutin exchange
type: Reaction

543678
stoichiometry: 1.0
species: 575252
type: SpeciesReference

586778
units: 456180
value: 0.0
type: LocalParameter

459040
stoichiometry: 1.0
species: 576538
type: SpeciesReference

492326
stoichiometry: 1.0
species: 574239
type: SpeciesReference

581264
name: protoporphyrinogen oxidase (aerobic)
notes: GENE_ASSOCIATION: b3850 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 1.3.3.4
reversible: false
reactant: 601010
fast: false
reactant: 600998
product: 601022
product: 601034
kinetic law: 601046
type: Reaction

594296
units: 456180
value: 0.0
type: LocalParameter

587283
units: 456180
value: 0.0
type: LocalParameter

590986
stoichiometry: 1.0
species: 577890
type: SpeciesReference

590312
units: 456180
value: 0.0
type: LocalParameter

586779
units: 456180
value: 1000.0
type: LocalParameter

530130
stoichiometry: 1.0
species: 576016
type: SpeciesReference

496726
stoichiometry: 1.0
species: 575920
type: SpeciesReference

587282
units: 456180
value: 0.0
type: LocalParameter

582826
units: 456180
value: 0.0
type: LocalParameter

531900
stoichiometry: 1.0
species: 575090
type: SpeciesReference

578285
kinetic law: 459924
reactant: 459912
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: aerobactin minus Fe3 exchange
type: Reaction

586775
units: 456180
value: 0.0
type: LocalParameter

590313
units: 456180
value: 1000.0
type: LocalParameter

590987
units: 456180
value: 0.0
type: LocalParameter

600540
stoichiometry: 1.0
species: 575824
type: SpeciesReference

501512
stoichiometry: 1.0
species: 575785
type: SpeciesReference

581262
type: Reaction
reversible: false
reactant: 600926
product: 600962
name: prephenate dehydratase
kinetic law: 600986
reactant: 600938
product: 600950
fast: false
notes: GENE_ASSOCIATION: b2599 SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism EC Number: 4.2.1.51
product: 600974

500133
stoichiometry: 1.0
species: 574515
type: SpeciesReference

594294
units: 456180
value: 0.0
type: LocalParameter

582825
units: 456180
value: 1000.0
type: LocalParameter

578286
kinetic law: 459948
reactant: 459936
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Aerobactin exchange
type: Reaction

507576
stoichiometry: 1.0
species: 575528
type: SpeciesReference

590988
units: 456180
value: 0.0
type: LocalParameter

613688
stoichiometry: 1.0
species: 575711
type: SpeciesReference

586777
units: 456180
value: 0.0
type: LocalParameter

587284
units: 456180
value: 1000.0
type: LocalParameter

495773
stoichiometry: 1.0
species: 575854
type: SpeciesReference

574754
notes: FORMULA: C2H6O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Ethanol
type: Species

489968
stoichiometry: 1.0
species: 573965
type: SpeciesReference

524562
stoichiometry: 1.0
species: 575711
type: SpeciesReference

594293
units: 456180
value: 1000.0
type: LocalParameter

481355
stoichiometry: 1.0
species: 575099
type: SpeciesReference

472152
stoichiometry: 1.0
species: 574559
type: SpeciesReference

587701
units: 456180
value: 1000.0
type: LocalParameter

613471
stoichiometry: 1.0
species: 575354
type: SpeciesReference

594059
units: 456180
value: 0.0
type: LocalParameter

579234
kinetic law: 491034
product: 491010
reactant: 490998
reversible: true
type: Reaction
name: aspartate kinase
reactant: 490986
notes: GENE_ASSOCIATION: (b0002 or b3940 or b4024) SUBSYSTEM: Threonine and Lysine Metabolism EC Number: 2.7.2.4
fast: false
product: 491022

582618
units: 456180
value: 1000.0
type: LocalParameter

595441
units: 456180
value: 1000.0
type: LocalParameter

590981
units: 456180
value: 0.0
type: LocalParameter

582404
units: 456180
value: 1000.0
type: LocalParameter

545716
stoichiometry: 1.0
species: 575522
type: SpeciesReference

591912
units: 456180
value: 0.0
type: LocalParameter

605522
stoichiometry: 1.0
species: 578097
type: SpeciesReference

512210
stoichiometry: 1.0
species: 575528
type: SpeciesReference

588930
units: 456180
value: 0.0
type: LocalParameter

594058
units: 456180
value: 0.0
type: LocalParameter

593680
units: 456180
value: 0.0
type: LocalParameter

480473
stoichiometry: 1.0
species: 574373
type: SpeciesReference

578280
kinetic law: 459852
reactant: 459840
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid exchange
type: Reaction

582617
units: 456180
value: 0.0
type: LocalParameter

579233
reversible: false
product: 490962
product: 490949
fast: false
reactant: 490913
name: aspartate carbamoyltransferase
notes: GENE_ASSOCIATION: ((b4244 and b4245) or b4245) SUBSYSTEM: Purine and Pyrimidine Biosynthesis EC Number: 2.1.3.2
type: Reaction
reactant: 490925
product: 490937
kinetic law: 490974

470027
stoichiometry: 1.0
species: 576157
type: SpeciesReference

488854
stoichiometry: 1.0
species: 577680
type: SpeciesReference

586774
units: 456180
value: 1000.0
type: LocalParameter

575824
notes: FORMULA: HO7P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Diphosphate
type: Species

582403
units: 456180
value: 0.0
type: LocalParameter

487018
stoichiometry: 1.0
species: 575090
type: SpeciesReference

560967
stoichiometry: 1.0
species: 577964
type: SpeciesReference

536292
stoichiometry: 1.0
species: 575099
type: SpeciesReference

588931
units: 456180
value: 1000.0
type: LocalParameter

586048
units: 456180
value: 1000.0
type: LocalParameter

582616
units: 456180
value: 0.0
type: LocalParameter

594056
units: 456180
value: 1000.0
type: LocalParameter

586771
units: 456180
value: 0.0
type: LocalParameter

575823
stoichiometry: 1.0
species: 578076
type: SpeciesReference

507151
stoichiometry: 1.0
species: 577761
type: SpeciesReference

590983
units: 456180
value: 0.0
type: LocalParameter

582402
units: 456180
value: 0.0
type: LocalParameter

488696
stoichiometry: 1.0
species: 576646
type: SpeciesReference

587702
units: 456180
value: 0.0
type: LocalParameter

520002
stoichiometry: 1.0
species: 574787
type: SpeciesReference

586049
units: 456180
value: 0.0
type: LocalParameter

588933
units: 456180
value: 0.0
type: LocalParameter

595440
units: 456180
value: 0.0
type: LocalParameter

586772
units: 456180
value: -1000.0
type: LocalParameter

594055
units: 456180
value: -1000.0
type: LocalParameter

582615
units: 456180
value: 0.0
type: LocalParameter

578282
kinetic law: 459876
reactant: 459864
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: L-Arabinose exchange
type: Reaction

590984
units: 456180
value: -1000.0
type: LocalParameter

590770
units: 456180
value: 1000.0
type: LocalParameter

579231
product: 490889
notes: GENE_ASSOCIATION: b0131 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 4.1.1.11
reversible: false
kinetic law: 490901
name: aspartate 1-decarboxylase
reactant: 490853
type: Reaction
reactant: 490865
fast: false
product: 490877

582829
units: 456180
value: 0.0
type: LocalParameter

602228
stoichiometry: 1.0
species: 575866
type: SpeciesReference

582401
units: 456180
value: 0.0
type: LocalParameter

586046
units: 456180
value: 0.0
type: LocalParameter

596821
stoichiometry: 1.0
species: 577890
type: SpeciesReference

579230
kinetic law: 490841
product: 490829
reactant: 490817
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: arsenite transport via diffusion (extracellular to periplasm)
type: Reaction

590319
units: 456180
value: 1000.0
type: LocalParameter

582408
stoichiometry: 1.0
species: 575983
type: SpeciesReference

580412
reactant: 547041
reversible: false
product: 547053
type: Reaction
reactant: 547029
product: 547065
fast: false
kinetic law: 547078
notes: GENE_ASSOCIATION: ((b1291 and b3290 and b3849) or b1250 or (b1291 and b3290 and b1363) or b3747) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
name: potassium transport in via proton symport (periplasm)

519833
stoichiometry: 1.0
species: 574373
type: SpeciesReference

588934
units: 456180
value: 0.0
type: LocalParameter

594054
units: 456180
value: 0.0
type: LocalParameter

504495
stoichiometry: 1.0
species: 575651
type: SpeciesReference

457595
stoichiometry: 0.003805
species: 578055
type: SpeciesReference

595447
units: 456180
value: 1000.0
type: LocalParameter

512646
stoichiometry: 1.0
species: 575528
type: SpeciesReference

461672
stoichiometry: 1.0
species: 576897
type: SpeciesReference

561764
stoichiometry: 1.0
species: 575090
type: SpeciesReference

622153
stoichiometry: 1.0
species: 576325
type: SpeciesReference

623065
stoichiometry: 1.0
species: 575090
type: SpeciesReference

508309
stoichiometry: 1.0
species: 574627
type: SpeciesReference

523803
stoichiometry: 1.0
species: 577817
type: SpeciesReference

460949
stoichiometry: 1.0
species: 576775
type: SpeciesReference

582407
units: 456180
value: 0.0
type: LocalParameter

586770
units: 456180
value: 0.0
type: LocalParameter

588935
units: 456180
value: 0.0
type: LocalParameter

579019
name: Adenosyl cobinamide kinase
product: 480497
notes: GENE_ASSOCIATION: b1993 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 480510
reversible: false
reactant: 480461
fast: false
kinetic law: 480522
type: Reaction
product: 480485
reactant: 480473

586044
units: 456180
value: 0.0
type: LocalParameter

595444
units: 456180
value: 0.0
type: LocalParameter

590119
units: 456180
value: 0.0
type: LocalParameter

552529
stoichiometry: 1.0
species: 575725
type: SpeciesReference

575111
notes: FORMULA: C4H9NO2S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Homocysteine
type: Species

458522
stoichiometry: 53.95
species: 575090
type: SpeciesReference

553773
stoichiometry: 1.0
species: 575525
type: SpeciesReference

595443
units: 456180
value: 0.0
type: LocalParameter

579018
kinetic law: 480449
product: 480437
reactant: 480425
notes: GENE_ASSOCIATION: b0411 SUBSYSTEM: Transport, Outer Membrane EC Number:
fast: false
reversible: true
name: adenosine transport via diffusion (extracellular to periplasm)
type: Reaction

580410
fast: false
product: 546980
reactant: 546943
reversible: false
reactant: 546956
notes: GENE_ASSOCIATION: ((b0698 and b0697 and b0696) or (b0698 and b0697 and b0696 and b4513)) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
name: Potassium ABC transporter (periplasm)
type: Reaction
kinetic law: 547017
product: 547004
reactant: 546931
product: 546968
product: 546992

575827
notes: FORMULA: C34H32N4O4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Protoporphyrin
type: Species

527375
stoichiometry: 1.0
species: 577836
type: SpeciesReference

582406
units: 456180
value: 0.0
type: LocalParameter

487612
stoichiometry: 1.0
species: 575785
type: SpeciesReference

594052
units: 456180
value: 0.0
type: LocalParameter

586045
units: 456180
value: 0.0
type: LocalParameter

595445
units: 456180
value: 0.0
type: LocalParameter

610099
stoichiometry: 1.0
species: 575090
type: SpeciesReference

563270
stoichiometry: 1.0
species: 575516
type: SpeciesReference

582405
units: 456180
value: 0.0
type: LocalParameter

590980
units: 456180
value: 1000.0
type: LocalParameter

579017
name: adenosine transport in via proton symport, reversible (periplasm)
product: 480389
kinetic law: 480413
reversible: true
fast: false
product: 480401
notes: GENE_ASSOCIATION: b2406 SUBSYSTEM: Transport, Inner Membrane EC Number:
type: Reaction
reactant: 480377
reactant: 480365

588937
units: 456180
value: 1000.0
type: LocalParameter

582619
units: 456180
value: 0.0
type: LocalParameter

594051
units: 456180
value: 1000.0
type: LocalParameter

596653
stoichiometry: 1.0
species: 577887
type: SpeciesReference

595410
units: 456180
value: 0.0
type: LocalParameter

535018
stoichiometry: 1.0
species: 575090
type: SpeciesReference

479241
stoichiometry: 1.0
species: 574478
type: SpeciesReference

475114
stoichiometry: 1.0
species: 576088
type: SpeciesReference

561752
stoichiometry: 1.0
species: 574519
type: SpeciesReference

576076
notes: FORMULA: C9H10NO7 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N2-Succinyl-L-glutamate
type: Species

462881
stoichiometry: 1.0
species: 577047
type: SpeciesReference

589931
units: 456180
value: 0.0
type: LocalParameter

574998
stoichiometry: 1.0
species: 575758
type: SpeciesReference

595411
units: 456180
value: 0.0
type: LocalParameter

587040
units: 456180
value: 0.0
type: LocalParameter

480655
stoichiometry: 1.0
species: 574239
type: SpeciesReference

607179
stoichiometry: 1.0
species: 574373
type: SpeciesReference

498937
stoichiometry: 1.0
species: 575099
type: SpeciesReference

546992
stoichiometry: 1.0
species: 575270
type: SpeciesReference

484348
stoichiometry: 1.0
species: 575525
type: SpeciesReference

457313
stoichiometry: 9.8E-5
species: 576073
type: SpeciesReference

584344
units: 456180
value: 0.0
type: LocalParameter

577718
notes: FORMULA: C81H156O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: cardiolipin (tetraoctadecanoyl, n-C18:0)
type: Species

589320
units: 456180
value: 0.0
type: LocalParameter

584345
units: 456180
value: 0.0
type: LocalParameter

578691
kinetic law: 466519
product: 466506
reactant: 466494
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: false
name: 1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C14:1)
type: Reaction

458132
stoichiometry: 0.008675
species: 575432
type: SpeciesReference

589932
units: 456180
value: 1000.0
type: LocalParameter

574997
notes: FORMULA: C5H8NO7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Glutamate 5-phosphate
type: Species

591306
units: 456180
value: 0.0
type: LocalParameter

587041
units: 456180
value: 0.0
type: LocalParameter

592230
units: 456180
value: 0.0
type: LocalParameter

587279
units: 456180
value: 1000.0
type: LocalParameter

583540
units: 456180
value: 0.0
type: LocalParameter

577719
notes: FORMULA: C81H148O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: cardiolipin (tetraoctadec-11-enoyl, n-C18:1)
type: Species

519084
stoichiometry: 1.0
species: 576049
type: SpeciesReference

568826
stoichiometry: 1.0
species: 574652
type: SpeciesReference

584346
units: 456180
value: 0.0
type: LocalParameter

591303
units: 456180
value: 0.0
type: LocalParameter

578694
kinetic law: 466591
product: 466579
reactant: 466567
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: false
name: 1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C16:1)
type: Reaction

495531
stoichiometry: 1.0
species: 574474
type: SpeciesReference

587042
units: 456180
value: 1000.0
type: LocalParameter

512490
stoichiometry: 1.0
species: 575090
type: SpeciesReference

570422
stoichiometry: 1.0
species: 575785
type: SpeciesReference

525955
stoichiometry: 1.0
species: 574155
type: SpeciesReference

595969
units: 456180
value: 1000.0
type: LocalParameter

574994
notes: FORMULA: C5H9NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Glutamate 1-semialdehyde
type: Species

592233
units: 456180
value: 1000.0
type: LocalParameter

594469
units: 456180
value: 1000.0
type: LocalParameter

589930
units: 456180
value: 0.0
type: LocalParameter

578693
kinetic law: 466555
product: 466543
reactant: 466531
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: false
name: 1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C16:0)
type: Reaction

591304
units: 456180
value: 1000.0
type: LocalParameter

589322
units: 456180
value: 1000.0
type: LocalParameter

623815
stoichiometry: 2.0
species: 575090
type: SpeciesReference

576073
notes: FORMULA: C25H35N7O19P3S CHARGE: -5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Succinyl-CoA
type: Species

577713
notes: FORMULA: C65H116O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: cardiolipin (tetratetradec-7-enoyl, n-C14:1)
type: Species

548276
stoichiometry: 1.0
species: 575306
type: SpeciesReference

486258
stoichiometry: 1.0
species: 574532
type: SpeciesReference

592234
units: 456180
value: 0.0
type: LocalParameter

496774
stoichiometry: 1.0
species: 574462
type: SpeciesReference

572898
stoichiometry: 1.0
species: 575357
type: SpeciesReference

578696
kinetic law: 466628
product: 466616
reactant: 466604
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: false
name: 1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C18:0)
type: Reaction

587044
units: 456180
value: 0.0
type: LocalParameter

584348
units: 456180
value: 1000.0
type: LocalParameter

476504
stoichiometry: 1.0
species: 577643
type: SpeciesReference

617343
stoichiometry: 1.0
species: 577890
type: SpeciesReference

483365
stoichiometry: 1.0
species: 574163
type: SpeciesReference

595967
units: 456180
value: 0.0
type: LocalParameter

591163
units: 456180
value: 0.0
type: LocalParameter

503859
stoichiometry: 1.0
species: 574239
type: SpeciesReference

609455
stoichiometry: 1.0
species: 575785
type: SpeciesReference

614894
stoichiometry: 1.0
species: 574697
type: SpeciesReference

587045
units: 456180
value: 0.0
type: LocalParameter

472188
stoichiometry: 1.0
species: 574040
type: SpeciesReference

569373
stoichiometry: 1.0
species: 575824
type: SpeciesReference

568612
stoichiometry: 1.0
species: 577878
type: SpeciesReference

584349
units: 456180
value: 0.0
type: LocalParameter

530902
stoichiometry: 1.0
species: 575213
type: SpeciesReference

577715
notes: FORMULA: C73H140O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: cardiolipin (tetrahexadecanoyl, n-C16:0)
type: Species

526891
stoichiometry: 1.0
species: 575090
type: SpeciesReference

595966
units: 456180
value: 0.0
type: LocalParameter

592236
units: 456180
value: 0.0
type: LocalParameter

574991
notes: FORMULA: C5H8NO4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Glutamate
type: Species

591160
units: 456180
value: 0.0
type: LocalParameter

578270
kinetic law: 459683
reactant: 459671
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: beta-Alanine exchange
type: Reaction

591307
units: 456180
value: 0.0
type: LocalParameter

576070
notes: FORMULA: C4H4O4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Succinate
type: Species

541195
stoichiometry: 1.0
species: 575156
type: SpeciesReference

587046
units: 456180
value: 0.0
type: LocalParameter

529500
stoichiometry: 1.0
species: 574937
type: SpeciesReference

577716
notes: FORMULA: C73H132O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: cardiolipin (tetrahexadec-9-enoyl, n-C16:1)
type: Species

595965
units: 456180
value: 0.0
type: LocalParameter

539743
stoichiometry: 1.0
species: 575824
type: SpeciesReference

606672
stoichiometry: 1.0
species: 575785
type: SpeciesReference

592237
units: 456180
value: 0.0
type: LocalParameter

543810
stoichiometry: 1.0
species: 575252
type: SpeciesReference

591161
units: 456180
value: 1000.0
type: LocalParameter

578697
kinetic law: 466664
product: 466652
reactant: 466640
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: false
name: 1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C18:1)
type: Reaction

591308
units: 456180
value: 0.0
type: LocalParameter

491118
stoichiometry: 1.0
species: 574363
type: SpeciesReference

471668
stoichiometry: 1.0
species: 573985
type: SpeciesReference

587048
units: 456180
value: 1000.0
type: LocalParameter

589327
units: 456180
value: 1000.0
type: LocalParameter

588772
units: 456180
value: 1000.0
type: LocalParameter

567666
stoichiometry: 1.0
species: 577783
type: SpeciesReference

475792
stoichiometry: 1.0
species: 574058
type: SpeciesReference

561522
stoichiometry: 1.0
species: 575276
type: SpeciesReference

567182
stoichiometry: 1.0
species: 578001
type: SpeciesReference

588986
units: 456180
value: 1000.0
type: LocalParameter

574351
notes: FORMULA: C6H14N4OR CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Arginyl-tRNA(Arg)
type: Species

599667
stoichiometry: 1.0
species: 574476
type: SpeciesReference

598373
stoichiometry: 1.0
species: 577527
type: SpeciesReference

592238
units: 456180
value: 1000.0
type: LocalParameter

593605
units: 456180
value: 1000.0
type: LocalParameter

593083
units: 456180
value: 0.0
type: LocalParameter

587049
units: 456180
value: 0.0
type: LocalParameter

587271
units: 456180
value: 0.0
type: LocalParameter

578699
kinetic law: 466700
product: 466688
reactant: 466676
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: (R)-Propane-1,2-diol transport via diffusion (extracellular to periplasm)
type: Reaction

588985
units: 456180
value: 0.0
type: LocalParameter

553242
stoichiometry: 1.0
species: 575585
type: SpeciesReference

556680
stoichiometry: 1.0
species: 577985
type: SpeciesReference

514098
stoichiometry: 1.0
species: 574006
type: SpeciesReference

578271
kinetic law: 459707
reactant: 459695
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-Alanine exchange
type: Reaction

591770
units: 456180
value: 0.0
type: LocalParameter

593604
units: 456180
value: 0.0
type: LocalParameter

589329
units: 456180
value: 0.0
type: LocalParameter

595963
units: 456180
value: 1000.0
type: LocalParameter

502684
stoichiometry: 2.0
species: 575090
type: SpeciesReference

587272
units: 456180
value: 0.0
type: LocalParameter

577710
notes: FORMULA: C57H108O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: cardiolipin (tetradodecanoyl, n-C12:0)
type: Species

593086
units: 456180
value: 1000.0
type: LocalParameter

524574
stoichiometry: 1.0
species: 577818
type: SpeciesReference

613652
stoichiometry: 1.0
species: 576133
type: SpeciesReference

593603
units: 456180
value: 0.0
type: LocalParameter

578274
kinetic law: 459756
reactant: 459744
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-Alanyl-D-alanine exchange
type: Reaction

588989
units: 456180
value: 0.0
type: LocalParameter

574128
notes: FORMULA: C6H9O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5-Dehydro-D-gluconate
type: Species

595962
units: 456180
value: 0.0
type: LocalParameter

589938
units: 456180
value: 1000.0
type: LocalParameter

535662
stoichiometry: 1.0
species: 575525
type: SpeciesReference

587273
units: 456180
value: 1000.0
type: LocalParameter

551841
stoichiometry: 1.0
species: 573916
type: SpeciesReference

624671
stoichiometry: 1.0
species: 575824
type: SpeciesReference

588773
units: 456180
value: 0.0
type: LocalParameter

562042
stoichiometry: 1.0
species: 576169
type: SpeciesReference

578273
kinetic law: 459732
reactant: 459719
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: L-Alanine exchange
type: Reaction

588988
units: 456180
value: 0.0
type: LocalParameter

558721
stoichiometry: 1.0
species: 575785
type: SpeciesReference

589939
units: 456180
value: 0.0
type: LocalParameter

595961
units: 456180
value: 0.0
type: LocalParameter

614185
stoichiometry: 1.0
species: 575986
type: SpeciesReference

509832
stoichiometry: 1.0
species: 577766
type: SpeciesReference

577712
notes: FORMULA: C65H124O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: cardiolipin (tetratetradecanoyl, n-C14:0)
type: Species

480981
stoichiometry: 1.0
species: 574295
type: SpeciesReference

613230
stoichiometry: 1.0
species: 576070
type: SpeciesReference

587274
stoichiometry: 1.0
species: 575746
type: SpeciesReference

588982
units: 456180
value: 0.0
type: LocalParameter

589323
units: 456180
value: 0.0
type: LocalParameter

599122
stoichiometry: 1.0
species: 577887
type: SpeciesReference

548904
stoichiometry: 1.0
species: 575078
type: SpeciesReference

511255
stoichiometry: 1.0
species: 574239
type: SpeciesReference

589936
units: 456180
value: 0.0
type: LocalParameter

578276
kinetic law: 459780
reactant: 459768
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-Allose exchange
type: Reaction

593609
units: 456180
value: 0.0
type: LocalParameter

593831
units: 456180
value: 1000.0
type: LocalParameter

574126
notes: FORMULA: C9H11N3O9P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5-phosphoribosyl-5-carboxyaminoimidazole
type: Species

617112
stoichiometry: 1.0
species: 575483
type: SpeciesReference

600407
stoichiometry: 1.0
species: 574476
type: SpeciesReference

587275
units: 456180
value: 0.0
type: LocalParameter

574124
notes: FORMULA: C9H13N4O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5-Amino-6-(5'-phosphoribosylamino)uracil
type: Species

588981
units: 456180
value: 1000.0
type: LocalParameter

583118
units: 456180
value: -1000.0
type: LocalParameter

547528
stoichiometry: 1.0
species: 577890
type: SpeciesReference

593087
units: 456180
value: 0.0
type: LocalParameter

625276
stoichiometry: 1.0
species: 577887
type: SpeciesReference

584340
units: 456180
value: 0.0
type: LocalParameter

593608
units: 456180
value: 0.0
type: LocalParameter

473986
stoichiometry: 1.0
species: 575977
type: SpeciesReference

559962
stoichiometry: 1.0
species: 577890
type: SpeciesReference

602021
stoichiometry: 1.0
species: 575785
type: SpeciesReference

591774
units: 456180
value: 1000.0
type: LocalParameter

588984
units: 456180
value: 0.0
type: LocalParameter

587276
units: 456180
value: 0.0
type: LocalParameter

588770
units: 456180
value: 0.0
type: LocalParameter

589325
units: 456180
value: 0.0
type: LocalParameter

485098
stoichiometry: 1.0
species: 577671
type: SpeciesReference

584341
units: 456180
value: 0.0
type: LocalParameter

560372
stoichiometry: 2.0
species: 577677
type: SpeciesReference

589934
units: 456180
value: 0.0
type: LocalParameter

593607
units: 456180
value: 0.0
type: LocalParameter

466965
stoichiometry: 1.0
species: 577571
type: SpeciesReference

591771
units: 456180
value: 0.0
type: LocalParameter

574122
notes: FORMULA: C9H15N4O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5-Amino-6-(5'-phosphoribitylamino)uracil
type: Species

505409
stoichiometry: 1.0
species: 574448
type: SpeciesReference

587277
units: 456180
value: 0.0
type: LocalParameter

589326
units: 456180
value: 0.0
type: LocalParameter

584342
units: 456180
value: 1000.0
type: LocalParameter

589935
units: 456180
value: 0.0
type: LocalParameter

578277
kinetic law: 459804
reactant: 459792
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Allantoin exchange
type: Reaction

460708
stoichiometry: 1.0
species: 576745
type: SpeciesReference

591772
units: 456180
value: 0.0
type: LocalParameter

598154
stoichiometry: 1.0
species: 577518
type: SpeciesReference

591766
units: 456180
value: 0.0
type: LocalParameter

574347
notes: FORMULA: C6H15N4O2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Arginine
type: Species

582164
units: 456180
value: 1000.0
type: LocalParameter

599886
stoichiometry: 1.0
species: 575090
type: SpeciesReference

592457
units: 456180
value: 0.0
type: LocalParameter

524151
stoichiometry: 1.0
species: 575099
type: SpeciesReference

588768
units: 456180
value: 0.0
type: LocalParameter

466748
stoichiometry: 1.0
species: 576484
type: SpeciesReference

578814
product: 470857
type: Reaction
name: 3-hydroxypropionate transport via proton symport (periplasm)
reversible: false
kinetic law: 470869
reactant: 470832
fast: false
product: 470845
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 470820

578279
kinetic law: 459828
reactant: 459816
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: AMP exchange
type: Reaction

520838
stoichiometry: 2.0
species: 575090
type: SpeciesReference

583114
units: 456180
value: 1000.0
type: LocalParameter

566060
stoichiometry: 1.0
species: 575099
type: SpeciesReference

490235
stoichiometry: 1.0
species: 574373
type: SpeciesReference

577002
notes: FORMULA: C3H6O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Glyceraldehyde
type: Species

574132
notes: FORMULA: C5H10O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5'-deoxyribose
type: Species

463873
stoichiometry: 1.0
species: 577170
type: SpeciesReference

582163
units: 456180
value: 0.0
type: LocalParameter

593823
units: 456180
value: 0.0
type: LocalParameter

550450
stoichiometry: 1.0
species: 577521
type: SpeciesReference

588769
units: 456180
value: 0.0
type: LocalParameter

535442
stoichiometry: 1.0
species: 574243
type: SpeciesReference

541607
stoichiometry: 1.0
species: 575099
type: SpeciesReference

538948
stoichiometry: 1.0
species: 577053
type: SpeciesReference

588990
units: 456180
value: 0.0
type: LocalParameter

561304
stoichiometry: 1.0
species: 575249
type: SpeciesReference

475574
stoichiometry: 1.0
species: 574036
type: SpeciesReference

593820
units: 456180
value: 1000.0
type: LocalParameter

582162
units: 456180
value: 0.0
type: LocalParameter

592459
units: 456180
value: 1000.0
type: LocalParameter

591764
units: 456180
value: 0.0
type: LocalParameter

593212
units: 456180
value: 1000.0
type: LocalParameter

578816
name: 3-keto-L-gulonate kinase
fast: false
notes: GENE_ASSOCIATION: b3580 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
product: 470918
type: Reaction
reversible: false
kinetic law: 470942
product: 470930
reactant: 470881
product: 470906
reactant: 470894

581057
reactant: 578428
product: 578452
product: 578440
reversible: false
fast: false
name: phosphatidylethanolamine transport via ABC system (n-C14:1, periplasm)
type: Reaction
reactant: 578404
kinetic law: 578488
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 578476
reactant: 578416
product: 578464

604914
stoichiometry: 1.0
species: 575198
type: SpeciesReference

592680
units: 456180
value: 1000.0
type: LocalParameter

587491
units: 456180
value: 0.0
type: LocalParameter

583116
units: 456180
value: 0.0
type: LocalParameter

574130
notes: FORMULA: C6H6O7 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5-Dehydro-4-deoxy-D-glucarate
type: Species

567883
stoichiometry: 1.0
species: 577754
type: SpeciesReference

579209
kinetic law: 489749
product: 489713
product: 489737
fast: false
reversible: false
reactant: 489677
type: Reaction
product: 489701
reactant: 489665
product: 489725
notes: GENE_ASSOCIATION: ((b2310 and b2307 and b2306 and b2308) or (b0863 and b0860 and b0861 and b0864 and b0862)) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 489689
name: L-arginine transport via ABC system (periplasm)

590520
units: 456180
value: 0.0
type: LocalParameter

592458
units: 456180
value: 0.0
type: LocalParameter

593821
units: 456180
value: 0.0
type: LocalParameter

579207
product: 489641
product: 489617
name: Arginyl-tRNA synthetase
reactant: 489593
product: 489629
fast: false
type: Reaction
reactant: 489581
kinetic law: 489653
reactant: 489605
notes: GENE_ASSOCIATION: b1876 SUBSYSTEM: tRNA Charging EC Number: 6.1.1.19
reversible: false

593213
units: 456180
value: 0.0
type: LocalParameter

591763
units: 456180
value: 1000.0
type: LocalParameter

546565
stoichiometry: 1.0
species: 574476
type: SpeciesReference

578817
product: 470979
reactant: 470954
product: 470991
notes: GENE_ASSOCIATION: b4213 SUBSYSTEM: Nucleotide Salvage Pathway EC Number:
fast: false
reactant: 470966
kinetic law: 471004
reversible: false
name: 3'-nucleotidase (UMP) (periplasm)
type: Reaction

581058
fast: false
product: 578548
product: 578572
kinetic law: 578584
reversible: false
name: phosphatidylethanolamine transport via ABC system (n-C16:0, periplasm)
product: 578560
product: 578536
reactant: 578524
reactant: 578500
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
type: Reaction
reactant: 578512

583117
units: 456180
value: 0.0
type: LocalParameter

587490
units: 456180
value: 1000.0
type: LocalParameter

517819
stoichiometry: 1.0
species: 578019
type: SpeciesReference

540678
stoichiometry: 1.0
species: 574239
type: SpeciesReference

593090
units: 456180
value: 0.0
type: LocalParameter

553025
stoichiometry: 1.0
species: 575114
type: SpeciesReference

574345
notes: FORMULA: C22H33FeN4O13 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Aerobactin
type: Species

588992
units: 456180
value: 1000.0
type: LocalParameter

499914
stoichiometry: 1.0
species: 574377
type: SpeciesReference

589719
units: 456180
value: 0.0
type: LocalParameter

476093
stoichiometry: 1.0
species: 574183
type: SpeciesReference

504039
stoichiometry: 1.0
species: 575534
type: SpeciesReference

593612
units: 456180
value: 0.0
type: LocalParameter

457741
stoichiometry: 2.23E-4
species: 574289
type: SpeciesReference

582160
units: 456180
value: 0.0
type: LocalParameter

590521
units: 456180
value: 0.0
type: LocalParameter

593091
units: 456180
value: 0.0
type: LocalParameter

508116
stoichiometry: 1.0
species: 574478
type: SpeciesReference

599341
stoichiometry: 1.0
species: 573904
type: SpeciesReference

496485
stoichiometry: 1.0
species: 575090
type: SpeciesReference

571666
stoichiometry: 1.0
species: 575528
type: SpeciesReference

480014
stoichiometry: 1.0
species: 575267
type: SpeciesReference

587493
units: 456180
value: 0.0
type: LocalParameter

581054
reactant: 577981
fast: false
product: 578041
reactant: 578005
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
type: Reaction
kinetic law: 578065
product: 578017
name: phosphatidylethanolamine transport via ABC system (n-C12:0, periplasm)
product: 578053
reversible: false
reactant: 577993
product: 578029

610268
stoichiometry: 1.0
species: 576007
type: SpeciesReference

593827
units: 456180
value: 0.0
type: LocalParameter

543129
stoichiometry: 1.0
species: 573886
type: SpeciesReference

589718
units: 456180
value: 1000.0
type: LocalParameter

578819
type: Reaction
name: 3'-nucleotidase (CMP) (periplasm)
reactant: 471016
product: 471052
fast: false
reactant: 471028
reversible: false
kinetic law: 471064
notes: GENE_ASSOCIATION: b4213 SUBSYSTEM: Nucleotide Salvage Pathway EC Number:
product: 471040

583110
units: 456180
value: 0.0
type: LocalParameter

590522
units: 456180
value: 1000.0
type: LocalParameter

588764
units: 456180
value: 0.0
type: LocalParameter

516887
stoichiometry: 1.0
species: 575201
type: SpeciesReference

574343
notes: FORMULA: C22H33N4O13 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: aerobactin minus Fe3
type: Species

593092
units: 456180
value: 1000.0
type: LocalParameter

581055
reactant: 578077
reactant: 578089
product: 578137
reactant: 578101
type: Reaction
product: 578113
fast: false
kinetic law: 578392
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 578149
product: 578125
name: phosphatidylethanolamine transport via ABC system (n-C14:0, periplasm)
reversible: false

592681
units: 456180
value: 0.0
type: LocalParameter

583111
stoichiometry: 1.0
species: 574239
type: SpeciesReference

591768
units: 456180
value: 1000.0
type: LocalParameter

593824
units: 456180
value: 0.0
type: LocalParameter

592685
units: 456180
value: 0.0
type: LocalParameter

593216
units: 456180
value: 0.0
type: LocalParameter

588765
units: 456180
value: 0.0
type: LocalParameter

587495
units: 456180
value: 1000.0
type: LocalParameter

501584
stoichiometry: 2.0
species: 577890
type: SpeciesReference

581052
fast: false
kinetic law: 577909
notes: GENE_ASSOCIATION: (b0052 and b2564) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 577885
reactant: 577666
product: 577776
product: 577800
reactant: 577642
reversible: false
reactant: 577654
type: Reaction
product: 577897
product: 577788
name: Pyridoxine 5'-phosphate synthase
product: 577873

591767
units: 456180
value: 0.0
type: LocalParameter

583112
units: 456180
value: 0.0
type: LocalParameter

592684
units: 456180
value: 0.0
type: LocalParameter

560590
stoichiometry: 1.0
species: 575375
type: SpeciesReference

590524
units: 456180
value: 0.0
type: LocalParameter

589716
units: 456180
value: 0.0
type: LocalParameter

510181
stoichiometry: 1.0
species: 576796
type: SpeciesReference

537566
stoichiometry: 1.0
species: 575078
type: SpeciesReference

593825
units: 456180
value: 1000.0
type: LocalParameter

458987
stoichiometry: 1.0
species: 576532
type: SpeciesReference

593217
units: 456180
value: -1000.0
type: LocalParameter

593611
units: 456180
value: 1000.0
type: LocalParameter

497707
stoichiometry: 1.0
species: 578034
type: SpeciesReference

587494
units: 456180
value: 0.0
type: LocalParameter

588766
units: 456180
value: 1000.0
type: LocalParameter

574341
notes: FORMULA: C12H15O10P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Arbutin 6-phosphate
type: Species

581053
kinetic law: 577969
product: 577945
type: Reaction
fast: false
reactant: 577921
name: Pyridoxine 5-phosphate phosphatase
reversible: false
product: 577957
reactant: 577933
notes: GENE_ASSOCIATION: b0766 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:

583113
units: 456180
value: 0.0
type: LocalParameter

591310
units: 456180
value: 1000.0
type: LocalParameter

594462
units: 456180
value: -1000.0
type: LocalParameter

583546
units: 456180
value: 0.0
type: LocalParameter

595418
units: 456180
value: -1000.0
type: LocalParameter

591168
units: 456180
value: 0.0
type: LocalParameter

579202
reactant: 489325
reactant: 489313
name: arginine decarboxylase
type: Reaction
notes: GENE_ASSOCIATION: b2938 SUBSYSTEM: Arginine and Proline Metabolism EC Number: 4.1.1.19
product: 489350
reversible: false
kinetic law: 489362
fast: false
product: 489338

590525
units: 456180
value: 0.0
type: LocalParameter

589715
units: 456180
value: 0.0
type: LocalParameter

583833
units: 456180
value: 0.0
type: LocalParameter

561970
stoichiometry: 1.0
species: 575824
type: SpeciesReference

475333
stoichiometry: 1.0
species: 574187
type: SpeciesReference

581051
fast: false
reactant: 577472
type: Reaction
kinetic law: 577630
product: 577618
reactant: 577460
name: pyridoxine 5'-phosphate oxidase
reversible: false
notes: GENE_ASSOCIATION: b1638 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 1.4.3.5
product: 577484

480437
stoichiometry: 1.0
species: 577656
type: SpeciesReference

595419
units: 456180
value: 1000.0
type: LocalParameter

594461
units: 456180
value: 0.0
type: LocalParameter

587496
units: 456180
value: 0.0
type: LocalParameter

591167
units: 456180
value: 1000.0
type: LocalParameter

583547
units: 456180
value: 1000.0
type: LocalParameter

557630
stoichiometry: 1.0
species: 575528
type: SpeciesReference

579201
notes: GENE_ASSOCIATION: b4117 SUBSYSTEM: Arginine and Proline Metabolism EC Number: 4.1.1.19
fast: false
name: arginine decarboxylase
product: 489277
type: Reaction
reactant: 489265
kinetic law: 489301
reactant: 489252
reversible: false
product: 489289

479023
stoichiometry: 1.0
species: 575785
type: SpeciesReference

590526
units: 456180
value: 0.0
type: LocalParameter

592686
units: 456180
value: 1000.0
type: LocalParameter

583834
units: 456180
value: 0.0
type: LocalParameter

589714
units: 456180
value: 0.0
type: LocalParameter

617610
stoichiometry: 1.0
species: 574609
type: SpeciesReference

589712
units: 456180
value: 1000.0
type: LocalParameter

587499
units: 456180
value: 0.0
type: LocalParameter

592450
units: 456180
value: 0.0
type: LocalParameter

583548
stoichiometry: 1.0
species: 575090
type: SpeciesReference

535237
stoichiometry: 1.0
species: 575090
type: SpeciesReference

469712
stoichiometry: 1.0
species: 573904
type: SpeciesReference

592689
units: 456180
value: 0.0
type: LocalParameter

593828
units: 456180
value: 0.0
type: LocalParameter

583835
units: 456180
value: 0.0
type: LocalParameter

470857
stoichiometry: 1.0
species: 577887
type: SpeciesReference

589711
units: 456180
value: -1000.0
type: LocalParameter

587498
units: 456180
value: 0.0
type: LocalParameter

483948
stoichiometry: 1.0
species: 575510
type: SpeciesReference

583549
units: 456180
value: 0.0
type: LocalParameter

591165
units: 456180
value: 0.0
type: LocalParameter

595417
units: 456180
value: 0.0
type: LocalParameter

583836
units: 456180
value: 1000.0
type: LocalParameter

591164
units: 456180
value: 0.0
type: LocalParameter

502010
stoichiometry: 1.0
species: 576049
type: SpeciesReference

593829
units: 456180
value: 0.0
type: LocalParameter

590528
units: 456180
value: 1000.0
type: LocalParameter

492860
stoichiometry: 1.0
species: 574387
type: SpeciesReference

614606
stoichiometry: 1.0
species: 578132
type: SpeciesReference

617562
stoichiometry: 1.0
species: 576193
type: SpeciesReference

583542
units: 456180
value: 1000.0
type: LocalParameter

595414
units: 456180
value: 1000.0
type: LocalParameter

481609
stoichiometry: 1.0
species: 574267
type: SpeciesReference

576079
notes: FORMULA: C9H11NO6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N2-Succinyl-L-glutamate 5-semialdehyde
type: Species

591314
units: 456180
value: 0.0
type: LocalParameter

589710
units: 456180
value: 0.0
type: LocalParameter

594467
units: 456180
value: 0.0
type: LocalParameter

590529
units: 456180
value: 0.0
type: LocalParameter

486039
stoichiometry: 1.0
species: 575090
type: SpeciesReference

620968
stoichiometry: 1.0
species: 575525
type: SpeciesReference

611887
stoichiometry: 1.0
species: 577887
type: SpeciesReference

608074
stoichiometry: 1.0
species: 575066
type: SpeciesReference

579206
name: argininosuccinate synthase
fast: false
reversible: false
reactant: 489508
product: 489520
type: Reaction
product: 489532
product: 489545
reactant: 489496
kinetic law: 489569
product: 489557
reactant: 489484
notes: GENE_ASSOCIATION: b3172 SUBSYSTEM: Arginine and Proline Metabolism EC Number: 6.3.4.5

595415
units: 456180
value: 0.0
type: LocalParameter

577005
notes: FORMULA: C5H11NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Glycine betaine
type: Species

583543
units: 456180
value: 0.0
type: LocalParameter

463267
stoichiometry: 1.0
species: 577095
type: SpeciesReference

582168
units: 456180
value: 0.0
type: LocalParameter

592451
units: 456180
value: 0.0
type: LocalParameter

456900
stoichiometry: 3.0E-6
species: 575339
type: SpeciesReference

591313
units: 456180
value: 0.0
type: LocalParameter

578810
reactant: 470615
notes: GENE_ASSOCIATION: b0347 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
reactant: 470603
product: 470639
reactant: 470627
type: Reaction
reversible: false
product: 470651
product: 470663
kinetic law: 470675
reactant: 470591
fast: false
name: 3-hydroxycinnamate hydroxylase

594466
units: 456180
value: 0.0
type: LocalParameter

583830
units: 456180
value: 0.0
type: LocalParameter

592452
stoichiometry: 1.0
species: 575090
type: SpeciesReference

579205
kinetic law: 489472
product: 489460
product: 489448
reactant: 489436
notes: GENE_ASSOCIATION: b3960 SUBSYSTEM: Arginine and Proline Metabolism EC Number: 4.3.2.1
fast: false
reversible: true
name: argininosuccinate lyase
type: Reaction

533183
stoichiometry: 1.0
species: 575090
type: SpeciesReference

467193
stoichiometry: 1.0
species: 577575
type: SpeciesReference

582167
units: 456180
value: 0.0
type: LocalParameter

595412
units: 456180
value: -1000.0
type: LocalParameter

578811
fast: false
notes: GENE_ASSOCIATION: b0347 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
product: 470747
kinetic law: 470771
reactant: 470687
product: 470735
reactant: 470699
reactant: 470723
product: 470759
reactant: 470711
reversible: false
type: Reaction
name: 3-(3-hydroxy-phenyl)propionate hydroxylase

544366
stoichiometry: 1.0
species: 577083
type: SpeciesReference

501094
stoichiometry: 1.0
species: 574239
type: SpeciesReference

583831
units: 456180
value: 1000.0
type: LocalParameter

594465
units: 456180
value: 0.0
type: LocalParameter

592455
units: 456180
value: 0.0
type: LocalParameter

606454
stoichiometry: 1.0
species: 577890
type: SpeciesReference

582166
units: 456180
value: 0.0
type: LocalParameter

574349
notes: FORMULA: C10H17N4O6 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N(omega)-(L-Arginino)succinate
type: Species

583545
units: 456180
value: 0.0
type: LocalParameter

513700
stoichiometry: 1.0
species: 577789
type: SpeciesReference

620752
stoichiometry: 1.0
species: 574988
type: SpeciesReference

534824
stoichiometry: 1.0
species: 577871
type: SpeciesReference

568561
stoichiometry: 1.0
species: 575099
type: SpeciesReference

594463
units: 456180
value: 1000.0
type: LocalParameter

578690
kinetic law: 466482
product: 466470
reactant: 466458
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: false
name: 1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C14:0)
type: Reaction

591311
units: 456180
value: 0.0
type: LocalParameter

578813
kinetic law: 470807
product: 470795
reactant: 470783
notes: GENE_ASSOCIATION: (b1377 or b0929 or b2215 or b0241) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: 3-hydroxypropionate transport via diffusion (extracellular to periplasm)
type: Reaction

577008
notes: FORMULA: C3H8O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Glycerol
type: Species

579203
reversible: true
fast: false
reactant: 489387
product: 489412
notes: GENE_ASSOCIATION: b1605 SUBSYSTEM: Transport, Inner Membrane EC Number:
type: Reaction
product: 489400
reactant: 489375
kinetic law: 489424
name: arginine/ornithine antiporter (periplasm)

592454
units: 456180
value: 1000.0
type: LocalParameter

469941
stoichiometry: 1.0
species: 577616
type: SpeciesReference

577707
notes: FORMULA: C6H5O7 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Citrate
type: Species

594456
units: 456180
value: -1000.0
type: LocalParameter

592894
units: 456180
value: 0.0
type: LocalParameter

519072
stoichiometry: 1.0
species: 575099
type: SpeciesReference

583552
units: 456180
value: 1000.0
type: LocalParameter

581493
type: Reaction
reversible: false
name: L-serine via sodium symport (periplasm)
product: 611059
kinetic law: 611085
notes: GENE_ASSOCIATION: b3089 SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
product: 611072
reactant: 611033
reactant: 611046

587268
units: 456180
value: 1000.0
type: LocalParameter

570410
stoichiometry: 1.0
species: 575090
type: SpeciesReference

578682
kinetic law: 466337
reactant: 466325
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Xanthosine exchange
type: Reaction

592895
units: 456180
value: 0.0
type: LocalParameter

583551
units: 456180
value: -1000.0
type: LocalParameter

574982
notes: FORMULA: C5H10N2O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Glutamine
type: Species

592245
stoichiometry: 1.0
species: 574441
type: SpeciesReference

623827
stoichiometry: 1.0
species: 575330
type: SpeciesReference

581492
notes: GENE_ASSOCIATION: (b2796 or b3116) SUBSYSTEM: Transport, Inner Membrane EC Number:
name: L-serine reversible transport via proton symport (periplasm)
fast: false
reactant: 610981
kinetic law: 611020
type: Reaction
product: 610994
product: 611007
reversible: true
reactant: 610968

495544
stoichiometry: 2.0
species: 575090
type: SpeciesReference

587269
units: 456180
value: 0.0
type: LocalParameter

576061
notes: FORMULA: C12H21O14P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Sucrose 6-phosphate
type: Species

624453
stoichiometry: 1.0
species: 576424
type: SpeciesReference

578681
kinetic law: 466313
reactant: 466300
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Xanthosine 5'-phosphate exchange
type: Reaction

584359
units: 456180
value: 1000.0
type: LocalParameter

587055
units: 456180
value: 0.0
type: LocalParameter

594458
units: 456180
value: 1000.0
type: LocalParameter

497995
stoichiometry: 1.0
species: 577718
type: SpeciesReference

598982
stoichiometry: 1.0
species: 577896
type: SpeciesReference

599329
stoichiometry: 1.0
species: 574373
type: SpeciesReference

584355
units: 456180
value: 0.0
type: LocalParameter

581496
kinetic law: 611194
fast: false
name: S-Formylglutathione hydralase
product: 611182
product: 611158
type: Reaction
product: 611170
reactant: 611146
reversible: false
reactant: 611134
notes: GENE_ASSOCIATION: (b2154 or b0355) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 3.1.2.12

525399
stoichiometry: 1.0
species: 575824
type: SpeciesReference

583550
units: 456180
value: 0.0
type: LocalParameter

591170
units: 456180
value: 0.0
type: LocalParameter

535006
stoichiometry: 1.0
species: 575495
type: SpeciesReference

574986
stoichiometry: 1.0
species: 575558
type: SpeciesReference

587266
units: 456180
value: 0.0
type: LocalParameter

595423
units: 456180
value: 0.0
type: LocalParameter

576064
notes: FORMULA: C10H17N4O5 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N2-Succinyl-L-arginine
type: Species

564804
stoichiometry: 1.0
species: 574373
type: SpeciesReference

581495
kinetic law: 611122
product: 611110
reactant: 611098
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-serine transport via diffusion (extracellular to periplasm)
type: Reaction

587052
units: 456180
value: 0.0
type: LocalParameter

592241
units: 456180
value: 0.0
type: LocalParameter

611206
stoichiometry: 1.0
species: 575099
type: SpeciesReference

584356
units: 456180
value: 0.0
type: LocalParameter

480667
stoichiometry: 1.0
species: 575090
type: SpeciesReference

592891
units: 456180
value: 0.0
type: LocalParameter

594459
units: 456180
value: 0.0
type: LocalParameter

540460
stoichiometry: 1.0
species: 575090
type: SpeciesReference

577706
notes: FORMULA: C16H28N2O11 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: N,N'-diacetylchitobiose
type: Species

457301
stoichiometry: 0.006744
species: 576055
type: SpeciesReference

498949
stoichiometry: 1.0
species: 577727
type: SpeciesReference

484336
stoichiometry: 1.0
species: 575099
type: SpeciesReference

592243
units: 456180
value: -1000.0
type: LocalParameter

591171
units: 456180
value: 0.0
type: LocalParameter

595421
units: 456180
value: 0.0
type: LocalParameter

595422
units: 456180
value: 0.0
type: LocalParameter

574985
notes: FORMULA: C5H9N2O2R CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Glutaminyl-tRNA(Gln)
type: Species

592242
units: 456180
value: 0.0
type: LocalParameter

587053
units: 456180
value: 1000.0
type: LocalParameter

458120
stoichiometry: 0.153686
species: 575417
type: SpeciesReference

584357
units: 456180
value: 0.0
type: LocalParameter

589920
units: 456180
value: 0.0
type: LocalParameter

591172
units: 456180
value: 1000.0
type: LocalParameter

592898
stoichiometry: 1.0
species: 575764
type: SpeciesReference

530914
stoichiometry: 1.0
species: 576382
type: SpeciesReference

595978
units: 456180
value: -1000.0
type: LocalParameter

577703
notes: FORMULA: C5H10N2O3S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Cys-Gly
type: Species

507176
stoichiometry: 1.0
species: 577761
type: SpeciesReference

556245
stoichiometry: 1.0
species: 575393
type: SpeciesReference

592249
units: 456180
value: 0.0
type: LocalParameter

606660
stoichiometry: 2.0
species: 575099
type: SpeciesReference

598386
stoichiometry: 1.0
species: 577887
type: SpeciesReference

583839
units: 456180
value: 0.0
type: LocalParameter

592899
units: 456180
value: 0.0
type: LocalParameter

595977
units: 456180
value: 0.0
type: LocalParameter

539731
stoichiometry: 1.0
species: 574062
type: SpeciesReference

577704
notes: FORMULA: C5H14NO CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Choline
type: Species

587059
units: 456180
value: 1000.0
type: LocalParameter

607396
stoichiometry: 1.0
species: 575971
type: SpeciesReference

578685
kinetic law: 466386
reactant: 466374
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: L-Xylulose exchange
type: Reaction

470416
stoichiometry: 1.0
species: 576112
type: SpeciesReference

583838
units: 456180
value: 0.0
type: LocalParameter

592246
units: 456180
value: 1000.0
type: LocalParameter

591174
units: 456180
value: 0.0
type: LocalParameter

487419
stoichiometry: 1.0
species: 575030
type: SpeciesReference

577701
notes: FORMULA: Cd CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Cadmium
type: Species

548288
stoichiometry: 1.0
species: 577887
type: SpeciesReference

592896
units: 456180
value: 1000.0
type: LocalParameter

587056
units: 456180
value: 0.0
type: LocalParameter

577700
notes: FORMULA: C62H88CoN13O14P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Cob(I)alamin
type: Species

496786
stoichiometry: 1.0
species: 575920
type: SpeciesReference

465357
stoichiometry: 1.0
species: 577353
type: SpeciesReference

578684
kinetic law: 466362
reactant: 466349
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-Xylose exchange
type: Reaction

486245
stoichiometry: 1.0
species: 575099
type: SpeciesReference

591175
units: 456180
value: 0.0
type: LocalParameter

592247
units: 456180
value: 0.0
type: LocalParameter

511797
stoichiometry: 2.0
species: 575090
type: SpeciesReference

579210
fast: false
product: 489785
product: 489797
reactant: 489773
reversible: false
reactant: 489761
type: Reaction
kinetic law: 489810
notes: GENE_ASSOCIATION: b2923 SUBSYSTEM: Transport, Inner Membrane EC Number:
name: L-arginine transport out via proton antiport (cytoplasm to periplasm)

617331
stoichiometry: 1.0
species: 573884
type: SpeciesReference

587057
units: 456180
value: 0.0
type: LocalParameter

569385
stoichiometry: 1.0
species: 576454
type: SpeciesReference

472176
stoichiometry: 1.0
species: 575357
type: SpeciesReference

503846
stoichiometry: 1.0
species: 574568
type: SpeciesReference

581490
name: Seryl-tRNA synthetase (selenocystein)
kinetic law: 610955
notes: GENE_ASSOCIATION: b0893 SUBSYSTEM: tRNA Charging EC Number: 6.1.1.11
type: Reaction
product: 610943
product: 610919
reversible: false
reactant: 610883
reactant: 610907
product: 610931
fast: false
reactant: 610895

609443
stoichiometry: 1.0
species: 574928
type: SpeciesReference

591176
units: 456180
value: 0.0
type: LocalParameter

574361
notes: FORMULA: AsO4 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: arsenate
type: Species

524586
stoichiometry: 1.0
species: 574757
type: SpeciesReference

588786
units: 456180
value: 0.0
type: LocalParameter

613664
stoichiometry: 1.0
species: 578124
type: SpeciesReference

502696
stoichiometry: 1.0
species: 574269
type: SpeciesReference

587260
units: 456180
value: 0.0
type: LocalParameter

595974
units: 456180
value: 1000.0
type: LocalParameter

589318
units: 456180
value: 0.0
type: LocalParameter

614172
stoichiometry: 1.0
species: 574865
type: SpeciesReference

525810
stoichiometry: 1.0
species: 575672
type: SpeciesReference

535674
stoichiometry: 1.0
species: 575534
type: SpeciesReference

603401
stoichiometry: 1.0
species: 575785
type: SpeciesReference

481197
stoichiometry: 1.0
species: 574913
type: SpeciesReference

593615
units: 456180
value: 0.0
type: LocalParameter

496049
stoichiometry: 2.0
species: 575090
type: SpeciesReference

578262
kinetic law: 459562
reactant: 459550
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Adenosine exchange
type: Reaction

624683
stoichiometry: 1.0
species: 576454
type: SpeciesReference

587261
units: 456180
value: 0.0
type: LocalParameter

593073
units: 456180
value: 0.0
type: LocalParameter

480993
stoichiometry: 1.0
species: 574859
type: SpeciesReference

595973
units: 456180
value: -1000.0
type: LocalParameter

589927
units: 456180
value: 1000.0
type: LocalParameter

509844
stoichiometry: 1.0
species: 577890
type: SpeciesReference

589319
units: 456180
value: 0.0
type: LocalParameter

578261
kinetic law: 459538
reactant: 459526
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Adenine exchange
type: Reaction

593614
units: 456180
value: 0.0
type: LocalParameter

574139
notes: FORMULA: C20H24N7O6 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5-Methyltetrahydrofolate
type: Species

588784
units: 456180
value: 0.0
type: LocalParameter

578688
kinetic law: 466446
product: 466434
reactant: 466422
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: false
name: 1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C12:0)
type: Reaction

567678
stoichiometry: 1.0
species: 578076
type: SpeciesReference

574363
notes: FORMULA: C4H6NO4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Aspartate
type: Species

589315
units: 456180
value: 0.0
type: LocalParameter

593072
units: 456180
value: 1000.0
type: LocalParameter

595976
units: 456180
value: 0.0
type: LocalParameter

589928
units: 456180
value: 0.0
type: LocalParameter

599655
stoichiometry: 1.0
species: 574187
type: SpeciesReference

588999
units: 456180
value: 0.0
type: LocalParameter

578687
kinetic law: 466410
reactant: 466398
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Zinc exchange
type: Reaction

588997
units: 456180
value: 1000.0
type: LocalParameter

556692
stoichiometry: 1.0
species: 577664
type: SpeciesReference

588783
units: 456180
value: 1000.0
type: LocalParameter

589316
units: 456180
value: 1000.0
type: LocalParameter

593616
units: 456180
value: 1000.0
type: LocalParameter

500338
stoichiometry: 1.0
species: 574504
type: SpeciesReference

582180
units: 456180
value: 0.0
type: LocalParameter

510821
stoichiometry: 1.0
species: 576013
type: SpeciesReference

589921
units: 456180
value: 1000.0
type: LocalParameter

583109
units: 456180
value: 1000.0
type: LocalParameter

593078
units: 456180
value: 1000.0
type: LocalParameter

566289
stoichiometry: 1.0
species: 575932
type: SpeciesReference

568125
stoichiometry: 1.0
species: 577780
type: SpeciesReference

587264
units: 456180
value: 0.0
type: LocalParameter

593220
units: 456180
value: 1000.0
type: LocalParameter

588996
units: 456180
value: 0.0
type: LocalParameter

466953
stoichiometry: 1.0
species: 576493
type: SpeciesReference

593619
units: 456180
value: 0.0
type: LocalParameter

584353
units: 456180
value: 1000.0
type: LocalParameter

560360
stoichiometry: 1.0
species: 577976
type: SpeciesReference

592890
units: 456180
value: 1000.0
type: LocalParameter

589314
units: 456180
value: 0.0
type: LocalParameter

593077
units: 456180
value: 0.0
type: LocalParameter

531522
stoichiometry: 1.0
species: 577856
type: SpeciesReference

574134
notes: FORMULA: C20H21N7O7 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5-Formyltetrahydrofolate
type: Species

588781
units: 456180
value: -1000.0
type: LocalParameter

587265
units: 456180
value: 0.0
type: LocalParameter

588995
units: 456180
value: 0.0
type: LocalParameter

593840
units: 456180
value: 0.0
type: LocalParameter

591760
units: 456180
value: 0.0
type: LocalParameter

504267
stoichiometry: 1.0
species: 576757
type: SpeciesReference

578265
kinetic law: 459611
reactant: 459598
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: silver exchange
type: Reaction

589923
units: 456180
value: 0.0
type: LocalParameter

593618
units: 456180
value: 0.0
type: LocalParameter

523195
stoichiometry: 2.0
species: 574814
type: SpeciesReference

599110
stoichiometry: 1.0
species: 577557
type: SpeciesReference

583107
units: 456180
value: 0.0
type: LocalParameter

593076
units: 456180
value: 0.0
type: LocalParameter

589311
units: 456180
value: 1000.0
type: LocalParameter

588780
units: 456180
value: 0.0
type: LocalParameter

610037
stoichiometry: 1.0
species: 574593
type: SpeciesReference

587262
units: 456180
value: 1000.0
type: LocalParameter

511243
stoichiometry: 1.0
species: 574721
type: SpeciesReference

466300
stoichiometry: 1.0
species: 577470
type: SpeciesReference

588994
stoichiometry: 1.0
species: 575099
type: SpeciesReference

593843
units: 456180
value: 0.0
type: LocalParameter

578264
kinetic law: 459586
reactant: 459574
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Adenosylcobalamin exchange
type: Reaction

620319
stoichiometry: 1.0
species: 577437
type: SpeciesReference

584351
units: 456180
value: 0.0
type: LocalParameter

589924
units: 456180
value: 0.0
type: LocalParameter

595972
units: 456180
value: 0.0
type: LocalParameter

589312
units: 456180
value: 0.0
type: LocalParameter

595970
units: 456180
value: 0.0
type: LocalParameter

583106
units: 456180
value: 0.0
type: LocalParameter

588993
units: 456180
value: 0.0
type: LocalParameter

574136
notes: FORMULA: C11H15N5O3S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5-Methylthioadenosine
type: Species

557618
stoichiometry: 1.0
species: 574476
type: SpeciesReference

593842
units: 456180
value: 1000.0
type: LocalParameter

539130
stoichiometry: 1.0
species: 574044
type: SpeciesReference

617125
stoichiometry: 1.0
species: 577887
type: SpeciesReference

589925
units: 456180
value: 0.0
type: LocalParameter

546552
stoichiometry: 1.0
species: 574225
type: SpeciesReference

584352
units: 456180
value: 0.0
type: LocalParameter

578828
reactant: 471427
fast: false
reactant: 471415
reactant: 471439
type: Reaction
notes: GENE_ASSOCIATION: b1093 SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 1.1.1.100
reversible: true
product: 471463
name: 3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:0)
kinetic law: 471475
product: 471451

581069
type: Reaction
product: 581317
name: phosphoethanolamine transferase (c-C16:1)
kinetic law: 581524
fast: false
reactant: 581293
notes: GENE_ASSOCIATION: b3546 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
reversible: false
product: 581329
reactant: 581305

593832
units: 456180
value: 0.0
type: LocalParameter

591752
units: 456180
value: 0.0
type: LocalParameter

574357
notes: FORMULA: C14H24N2O12PR2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Asparaginyl-tRNA(Asn)
type: Species

582174
units: 456180
value: 0.0
type: LocalParameter

593224
units: 456180
value: 0.0
type: LocalParameter

609843
stoichiometry: 1.0
species: 576070
type: SpeciesReference

576592
notes: FORMULA: C181H314N3O103P4 CHARGE: -9
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: 4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A
type: Species

583104
units: 456180
value: 1000.0
type: LocalParameter

578829
reversible: false
product: 471535
reactant: 471487
type: Reaction
reactant: 471499
kinetic law: 471547
name: 3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:1)
product: 471523
notes: GENE_ASSOCIATION: b1093 SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 1.1.1.100
fast: false
reactant: 471511

589708
units: 456180
value: 0.0
type: LocalParameter

583840
units: 456180
value: 0.0
type: LocalParameter

604901
stoichiometry: 1.0
species: 573888
type: SpeciesReference

591751
units: 456180
value: 1000.0
type: LocalParameter

507770
stoichiometry: 1.0
species: 574373
type: SpeciesReference

476015
stoichiometry: 1.0
species: 575522
type: SpeciesReference

582173
units: 456180
value: 0.0
type: LocalParameter

593225
units: 456180
value: -1000.0
type: LocalParameter

574143
notes: FORMULA: C14H17N2O7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N1-(5-Phospho-alpha-D-ribosyl)-5,6-dimethylbenzimidazole
type: Species

566071
stoichiometry: 1.0
species: 575531
type: SpeciesReference

536608
stoichiometry: 1.0
species: 575030
type: SpeciesReference

517807
stoichiometry: 1.0
species: 577887
type: SpeciesReference

583105
units: 456180
value: 0.0
type: LocalParameter

578826
reactant: 471355
kinetic law: 471403
notes: GENE_ASSOCIATION: b1093 SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 1.1.1.100
reversible: false
type: Reaction
name: 3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:1)
reactant: 471343
product: 471391
fast: false
reactant: 471367
product: 471379

583101
units: 456180
value: 0.0
type: LocalParameter

578267
kinetic law: 459635
reactant: 459623
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Agmatine exchange
type: Reaction

506910
stoichiometry: 1.0
species: 577760
type: SpeciesReference

574359
notes: FORMULA: AsO3 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: arsenite
type: Species

582176
units: 456180
value: 0.0
type: LocalParameter

524163
stoichiometry: 1.0
species: 574883
type: SpeciesReference

591754
units: 456180
value: 0.0
type: LocalParameter

598166
stoichiometry: 1.0
species: 577757
type: SpeciesReference

593620
units: 456180
value: 0.0
type: LocalParameter

593834
units: 456180
value: 0.0
type: LocalParameter

574144
stoichiometry: 1.0
species: 575654
type: SpeciesReference

577014
notes: FORMULA: C3H7O6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Glycerol 2-phosphate
type: Species

490247
stoichiometry: 1.0
species: 574982
type: SpeciesReference

583102
units: 456180
value: 0.0
type: LocalParameter

535454
stoichiometry: 1.0
species: 575824
type: SpeciesReference

593835
units: 456180
value: -1000.0
type: LocalParameter

578268
kinetic law: 459659
reactant: 459647
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: 2-Oxoglutarate exchange
type: Reaction

582175
units: 456180
value: 1000.0
type: LocalParameter

599873
stoichiometry: 1.0
species: 575833
type: SpeciesReference

593223
units: 456180
value: 0.0
type: LocalParameter

550462
stoichiometry: 1.0
species: 577890
type: SpeciesReference

592468
units: 456180
value: 0.0
type: LocalParameter

567896
stoichiometry: 1.0
species: 577890
type: SpeciesReference

480219
stoichiometry: 1.0
species: 575090
type: SpeciesReference

574145
notes: FORMULA: C7H9N5O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 6-hydroxymethyl dihydropterin
type: Species

475586
stoichiometry: 1.0
species: 574478
type: SpeciesReference

561316
stoichiometry: 1.0
species: 575456
type: SpeciesReference

583103
units: 456180
value: 0.0
type: LocalParameter

582898
units: 456180
value: 0.0
type: LocalParameter

590511
units: 456180
value: 1000.0
type: LocalParameter

593228
units: 456180
value: 1000.0
type: LocalParameter

582170
units: 456180
value: 1000.0
type: LocalParameter

593622
units: 456180
value: 1000.0
type: LocalParameter

591756
units: 456180
value: 1000.0
type: LocalParameter

589705
units: 456180
value: -1000.0
type: LocalParameter

593836
units: 456180
value: 1000.0
type: LocalParameter

581064
reactant: 580567
fast: false
reactant: 580579
kinetic law: 580846
reversible: false
product: 580603
name: Phenethylamine oxidase
product: 580834
notes: GENE_ASSOCIATION: b1386 SUBSYSTEM: Nitrogen Metabolism EC Number: 1.4.3.6
type: Reaction
product: 580615
reactant: 580591

593081
units: 456180
value: 0.0
type: LocalParameter

588777
units: 456180
value: 1000.0
type: LocalParameter

501572
stoichiometry: 4.0
species: 577740
type: SpeciesReference

587483
units: 456180
value: 0.0
type: LocalParameter

593229
units: 456180
value: 0.0
type: LocalParameter

588779
units: 456180
value: 0.0
type: LocalParameter

593623
units: 456180
value: 0.0
type: LocalParameter

591755
units: 456180
value: -1000.0
type: LocalParameter

592672
units: 456180
value: 1000.0
type: LocalParameter

537554
stoichiometry: 1.0
species: 574373
type: SpeciesReference

589704
units: 456180
value: 0.0
type: LocalParameter

592671
units: 456180
value: 0.0
type: LocalParameter

593082
units: 456180
value: 0.0
type: LocalParameter

574353
notes: FORMULA: C6H7O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-ascorbate-6-phosphate
type: Species

577011
notes: FORMULA: C3H5O4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: (R)-Glycerate
type: Species

515154
stoichiometry: 1.0
species: 574745
type: SpeciesReference

457753
stoichiometry: 0.295792
species: 574347
type: SpeciesReference

581067
reactant: 581233
kinetic law: 581281
reversible: true
reactant: 581026
notes: GENE_ASSOCIATION: b2320 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 581269
fast: false
product: 581257
name: Erythronate 4-phosphate (4per) dehydrogenase
product: 581245
type: Reaction

593838
units: 456180
value: 0.0
type: LocalParameter

591758
units: 456180
value: 0.0
type: LocalParameter

499926
stoichiometry: 1.0
species: 574502
type: SpeciesReference

589707
units: 456180
value: 1000.0
type: LocalParameter

620536
stoichiometry: 1.0
species: 575711
type: SpeciesReference

589309
units: 456180
value: 0.0
type: LocalParameter

610256
stoichiometry: 1.0
species: 575099
type: SpeciesReference

592670
units: 456180
value: 0.0
type: LocalParameter

480002
stoichiometry: 1.0
species: 574295
type: SpeciesReference

587481
units: 456180
value: 0.0
type: LocalParameter

571654
stoichiometry: 1.0
species: 575090
type: SpeciesReference

581066
kinetic law: 581014
product: 580975
reactant: 580897
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: phenethylamine transport via diffusion (extracellular to periplasm)
type: Reaction

588775
units: 456180
value: 0.0
type: LocalParameter

508104
stoichiometry: 1.0
species: 575099
type: SpeciesReference

593625
units: 456180
value: 0.0
type: LocalParameter

607191
stoichiometry: 1.0
species: 575099
type: SpeciesReference

582899
units: 456180
value: 0.0
type: LocalParameter

582171
units: 456180
value: 0.0
type: LocalParameter

590510
units: 456180
value: -1000.0
type: LocalParameter

589308
units: 456180
value: 0.0
type: LocalParameter

543117
stoichiometry: 1.0
species: 575093
type: SpeciesReference

593839
units: 456180
value: 0.0
type: LocalParameter

494178
stoichiometry: 1.0
species: 574233
type: SpeciesReference

587480
units: 456180
value: 1000.0
type: LocalParameter

588776
units: 456180
value: 0.0
type: LocalParameter

574355
notes: FORMULA: C4H8N2O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Asparagine
type: Species

574141
notes: FORMULA: C6H12O4S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5-Methylthio-D-ribose
type: Species

592462
units: 456180
value: 0.0
type: LocalParameter

595428
units: 456180
value: 0.0
type: LocalParameter

540895
stoichiometry: 1.0
species: 574760
type: SpeciesReference

591178
units: 456180
value: 1000.0
type: LocalParameter

589700
units: 456180
value: -1000.0
type: LocalParameter

520293
stoichiometry: 2.0
species: 574790
type: SpeciesReference

581060
product: 579248
kinetic law: 579562
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: false
product: 579526
reactant: 578596
reactant: 579236
product: 579538
product: 579550
name: phosphatidylethanolamine transport via ABC system (n-C16:1, periplasm)
fast: false
reactant: 578608
type: Reaction

469725
stoichiometry: 1.0
species: 575099
type: SpeciesReference

582600
units: 456180
value: 0.0
type: LocalParameter

592677
units: 456180
value: -1000.0
type: LocalParameter

618504
stoichiometry: 1.0
species: 574865
type: SpeciesReference

590515
units: 456180
value: 0.0
type: LocalParameter

583847
units: 456180
value: 1000.0
type: LocalParameter

535225
stoichiometry: 1.0
species: 575012
type: SpeciesReference

592463
units: 456180
value: 0.0
type: LocalParameter

582892
units: 456180
value: 0.0
type: LocalParameter

587486
units: 456180
value: 0.0
type: LocalParameter

595429
units: 456180
value: -1000.0
type: LocalParameter

578820
notes: GENE_ASSOCIATION: b4213 SUBSYSTEM: Nucleotide Salvage Pathway EC Number:
reactant: 471088
name: 3'-nucleotidase (AMP) (periplasm)
type: Reaction
reversible: false
kinetic law: 471124
fast: false
reactant: 471076
product: 471100
product: 471112

493598
stoichiometry: 1.0
species: 577694
type: SpeciesReference

483353
stoichiometry: 1.0
species: 574157
type: SpeciesReference

581061
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: false
product: 579647
reactant: 579586
fast: false
reactant: 579598
name: phosphatidylethanolamine transport via ABC system (n-C18:0, periplasm)
reactant: 579574
kinetic law: 579671
product: 579610
product: 579622
product: 579659
type: Reaction

592676
units: 456180
value: 0.0
type: LocalParameter

591759
units: 456180
value: 0.0
type: LocalParameter

617550
stoichiometry: 1.0
species: 573888
type: SpeciesReference

582893
units: 456180
value: 0.0
type: LocalParameter

579211
kinetic law: 489847
product: 489835
reactant: 489822
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-arginine transport via diffusion (extracellular to periplasm)
type: Reaction

583558
units: 456180
value: 1000.0
type: LocalParameter

587485
units: 456180
value: 1000.0
type: LocalParameter

482714
stoichiometry: 1.0
species: 573758
type: SpeciesReference

576598
notes: FORMULA: C5H5N5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Adenine
type: Species

594450
units: 456180
value: 0.0
type: LocalParameter

590513
units: 456180
value: 0.0
type: LocalParameter

583845
units: 456180
value: 0.0
type: LocalParameter

511931
stoichiometry: 1.0
species: 576157
type: SpeciesReference

589703
units: 456180
value: 0.0
type: LocalParameter

592675
units: 456180
value: 0.0
type: LocalParameter

475345
stoichiometry: 1.0
species: 574173
type: SpeciesReference

582602
units: 456180
value: 1000.0
type: LocalParameter

582896
units: 456180
value: 0.0
type: LocalParameter

579214
reactant: 489943
product: 489968
reactant: 489955
notes: GENE_ASSOCIATION: b4192 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
product: 489980
kinetic law: 489992
name: L-ascorbate 6-phosphate lactonase
reversible: false
type: Reaction
fast: false

519639
stoichiometry: 1.0
species: 577801
type: SpeciesReference

583559
units: 456180
value: 0.0
type: LocalParameter

591179
units: 456180
value: 0.0
type: LocalParameter

587484
units: 456180
value: -1000.0
type: LocalParameter

624236
stoichiometry: 1.0
species: 576439
type: SpeciesReference

589701
units: 456180
value: 1000.0
type: LocalParameter

581063
product: 580312
kinetic law: 580555
reactant: 580288
name: phosphatidylethanolamine transport via ABC system (n-C18:1, periplasm)
product: 580324
product: 580507
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
type: Reaction
reversible: false
reactant: 580300
reactant: 579683
product: 580519

479011
stoichiometry: 1.0
species: 575579
type: SpeciesReference

590514
units: 456180
value: 0.0
type: LocalParameter

583846
units: 456180
value: 0.0
type: LocalParameter

523609
stoichiometry: 1.0
species: 574823
type: SpeciesReference

487212
stoichiometry: 1.0
species: 576310
type: SpeciesReference

582601
units: 456180
value: 0.0
type: LocalParameter

579213
type: Reaction
product: 489907
reactant: 489871
reactant: 489859
reactant: 489883
reversible: true
product: 489895
fast: false
notes: GENE_ASSOCIATION: b3433 SUBSYSTEM: Threonine and Lysine Metabolism EC Number: 1.2.1.11
product: 489919
kinetic law: 489931
name: aspartate-semialdehyde dehydrogenase

582895
units: 456180
value: 1000.0
type: LocalParameter

534691
stoichiometry: 1.0
species: 575483
type: SpeciesReference

594452
units: 456180
value: 1000.0
type: LocalParameter

591300
units: 456180
value: 0.0
type: LocalParameter

582179
units: 456180
value: 1000.0
type: LocalParameter

583556
units: 456180
value: 0.0
type: LocalParameter

587051
units: 456180
value: 0.0
type: LocalParameter

538500
stoichiometry: 1.0
species: 575087
type: SpeciesReference

592467
units: 456180
value: 1000.0
type: LocalParameter

543604
stoichiometry: 2.0
species: 575246
type: SpeciesReference

583843
units: 456180
value: 0.0
type: LocalParameter

594451
units: 456180
value: -1000.0
type: LocalParameter

582178
units: 456180
value: 0.0
type: LocalParameter

595425
units: 456180
value: 1000.0
type: LocalParameter

558709
stoichiometry: 1.0
species: 575423
type: SpeciesReference

574988
notes: FORMULA: C5H8NO4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Glutamate
type: Species

620740
stoichiometry: 1.0
species: 574373
type: SpeciesReference

534812
stoichiometry: 1.0
species: 575021
type: SpeciesReference

503628
stoichiometry: 1.0
species: 577887
type: SpeciesReference

581498
reversible: false
fast: false
reactant: 611218
reactant: 611206
type: Reaction
name: Succinylglutamate desuccinylase
notes: GENE_ASSOCIATION: b1744 SUBSYSTEM: Arginine and Proline Metabolism EC Number:
kinetic law: 611254
product: 611242
product: 611230

579215
reactant: 490004
type: Reaction
product: 490040
product: 490028
name: L-ascorbate transport via PEP:Pyr PTS (periplasm)
kinetic law: 490052
fast: false
reversible: false
notes: GENE_ASSOCIATION: (b2415 and b2416 and b4195 and b4194 and b4193) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 490016

582177
units: 456180
value: 0.0
type: LocalParameter

578825
reactant: 471270
reversible: true
kinetic law: 471331
name: 3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:0)
fast: false
product: 471319
type: Reaction
product: 471307
reactant: 471295
notes: GENE_ASSOCIATION: b1093 SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 1.1.1.100
reactant: 471282

576067
notes: FORMULA: C11H8O5 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: o-Succinylbenzoate
type: Species

591302
units: 456180
value: 0.0
type: LocalParameter

579219
type: Reaction
kinetic law: 490211
product: 490199
reactant: 490163
notes: GENE_ASSOCIATION: b2957 SUBSYSTEM: Alanine and Aspartate Metabolism EC Number: 3.5.1.1
reactant: 490175
product: 490187
reversible: false
fast: false
name: L-asparaginase

595426
units: 456180
value: 0.0
type: LocalParameter

571222
stoichiometry: 1.0
species: 573914
type: SpeciesReference

583554
units: 456180
value: 0.0
type: LocalParameter

582891
units: 456180
value: 0.0
type: LocalParameter

587489
units: 456180
value: -1000.0
type: LocalParameter

486027
stoichiometry: 1.0
species: 574255
type: SpeciesReference

620956
stoichiometry: 1.0
species: 576340
type: SpeciesReference

581499
type: Reaction
reactant: 611290
product: 611314
reversible: false
notes: GENE_ASSOCIATION: b1746 SUBSYSTEM: Arginine and Proline Metabolism EC Number:
product: 611302
reactant: 611278
name: Succinylglutamic semialdehyde dehydrogenase
fast: false
kinetic law: 611339
product: 611326
reactant: 611266

579218
fast: false
reversible: false
reactant: 490114
product: 490126
kinetic law: 490150
product: 490138
notes: GENE_ASSOCIATION: (b1767 or b0828) SUBSYSTEM: Alanine and Aspartate Metabolism EC Number: 3.5.1.1
type: Reaction
name: L-asparaginase
reactant: 490102

608086
stoichiometry: 1.0
species: 576370
type: SpeciesReference

594455
units: 456180
value: 0.0
type: LocalParameter

590517
units: 456180
value: 1000.0
type: LocalParameter

616359
stoichiometry: 1.0
species: 574239
type: SpeciesReference

576595
notes: FORMULA: C5H9NO4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: O-Acetyl-L-serine
type: Species

578822
product: 471172
kinetic law: 471184
product: 471160
type: Reaction
notes: GENE_ASSOCIATION: b4213 SUBSYSTEM: Nucleotide Salvage Pathway EC Number:
reversible: false
name: 3'-nucleotidase (GMP) (periplasm)
reactant: 471148
fast: false
reactant: 471136

577017
notes: FORMULA: C3H7O6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Glycerol 3-phosphate
type: Species

465575
stoichiometry: 1.0
species: 577380
type: SpeciesReference

595427
stoichiometry: 1.0
species: 578151
type: SpeciesReference

583555
units: 456180
value: 0.0
type: LocalParameter

587488
units: 456180
value: 0.0
type: LocalParameter

592464
units: 456180
value: 0.0
type: LocalParameter

487637
stoichiometry: 1.0
species: 575099
type: SpeciesReference

533171
stoichiometry: 2.0
species: 575009
type: SpeciesReference

610497
stoichiometry: 1.0
species: 574263
type: SpeciesReference

577709
notes: FORMULA: Cl CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Chloride
type: Species

579217
kinetic law: 490090
product: 490078
reactant: 490065
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-ascorbate transport via diffusion (extracellular to periplasm)
type: Reaction

578823
reactant: 471221
reversible: true
kinetic law: 471258
product: 471233
name: 3-oxoacyl-[acyl-carrier-protein] reductase (n-C10:0)
fast: false
reactant: 471196
reactant: 471209
type: Reaction
product: 471245
notes: GENE_ASSOCIATION: b1093 SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 1.1.1.100

594454
units: 456180
value: 0.0
type: LocalParameter

590518
units: 456180
value: 0.0
type: LocalParameter

583842
units: 456180
value: 1000.0
type: LocalParameter

591187
units: 456180
value: 0.0
type: LocalParameter

587258
units: 456180
value: 0.0
type: LocalParameter

587020
units: 456180
value: 1000.0
type: LocalParameter

624272
stoichiometry: 1.0
species: 575480
type: SpeciesReference

508563
stoichiometry: 1.0
species: 573826
type: SpeciesReference

586517
units: 456180
value: 0.0
type: LocalParameter

476528
stoichiometry: 1.0
species: 576571
type: SpeciesReference

577737
notes: FORMULA: C7H13NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: crotonobetaine
type: Species

529295
stoichiometry: 1.0
species: 575522
type: SpeciesReference

591186
units: 456180
value: 0.0
type: LocalParameter

588967
units: 456180
value: 0.0
type: LocalParameter

579491
fast: false
kinetic law: 503822
reversible: true
name: cytidylate kinase (CMP)
reactant: 503786
reactant: 503773
product: 503798
notes: GENE_ASSOCIATION: b0910 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 2.7.4.14
product: 503810
type: Reaction

592258
stoichiometry: 1.0
species: 575030
type: SpeciesReference

503834
stoichiometry: 1.0
species: 574373
type: SpeciesReference

565408
stoichiometry: 1.0
species: 575537
type: SpeciesReference

614870
stoichiometry: 1.0
species: 575090
type: SpeciesReference

523621
stoichiometry: 1.0
species: 575090
type: SpeciesReference

483389
stoichiometry: 1.0
species: 574269
type: SpeciesReference

588966
units: 456180
value: 0.0
type: LocalParameter

592259
units: 456180
value: 1000.0
type: LocalParameter

576094
notes: FORMULA: H4O2S8Fe2R CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: SufBCD with bound [2Fe-2S] cluster
type: Species

587022
units: 456180
value: 0.0
type: LocalParameter

507188
stoichiometry: 1.0
species: 574600
type: SpeciesReference

485593
stoichiometry: 1.0
species: 575366
type: SpeciesReference

586515
units: 456180
value: 1000.0
type: LocalParameter

577739
notes: FORMULA: Cu CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Cu+
type: Species

583560
stoichiometry: 1.0
species: 575785
type: SpeciesReference

545596
stoichiometry: 1.0
species: 575240
type: SpeciesReference

574108
notes: FORMULA: C4H6O8P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 4-Phospho-D-erythronate
type: Species

470404
stoichiometry: 1.0
species: 575099
type: SpeciesReference

592470
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value: 0.0
type: LocalParameter

587023
units: 456180
value: 0.0
type: LocalParameter

586514
units: 456180
value: 0.0
type: LocalParameter

595989
units: 456180
value: 0.0
type: LocalParameter

507733
stoichiometry: 1.0
species: 575525
type: SpeciesReference

579490
kinetic law: 503760
product: 503748
reactant: 503736
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: cytidine transport via diffusion (extracellular to periplasm)
type: Reaction

496750
stoichiometry: 1.0
species: 575711
type: SpeciesReference

588968
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value: 0.0
type: LocalParameter

591185
units: 456180
value: 0.0
type: LocalParameter

598398
stoichiometry: 1.0
species: 577895
type: SpeciesReference

574107
stoichiometry: 1.0
species: 575099
type: SpeciesReference

543834
stoichiometry: 1.0
species: 575210
type: SpeciesReference

463291
stoichiometry: 1.0
species: 577098
type: SpeciesReference

586513
units: 456180
value: 0.0
type: LocalParameter

584368
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value: 0.0
type: LocalParameter

475139
stoichiometry: 1.0
species: 574078
type: SpeciesReference

587254
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value: 0.0
type: LocalParameter

587468
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value: 0.0
type: LocalParameter

591329
units: 456180
value: 0.0
type: LocalParameter

480631
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species: 577658
type: SpeciesReference

592254
units: 456180
value: 0.0
type: LocalParameter

583806
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species: 575099
type: SpeciesReference

587469
units: 456180
value: 1000.0
type: LocalParameter

583562
units: 456180
value: 0.0
type: LocalParameter

591182
units: 456180
value: 0.0
type: LocalParameter

525387
stoichiometry: 1.0
species: 574703
type: SpeciesReference

599317
stoichiometry: 1.0
species: 574086
type: SpeciesReference

587255
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value: 0.0
type: LocalParameter

501068
stoichiometry: 1.0
species: 574478
type: SpeciesReference

610062
stoichiometry: 3.0
species: 575099
type: SpeciesReference

591183
units: 456180
value: 1000.0
type: LocalParameter

611218
stoichiometry: 1.0
species: 576076
type: SpeciesReference

592255
units: 456180
value: 0.0
type: LocalParameter

459092
stoichiometry: 1.0
species: 576544
type: SpeciesReference

583561
units: 456180
value: 0.0
type: LocalParameter

544097
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species: 574532
type: SpeciesReference

590509
units: 456180
value: 0.0
type: LocalParameter

586511
units: 456180
value: 0.0
type: LocalParameter

457339
stoichiometry: 2.23E-4
species: 576181
type: SpeciesReference

568801
stoichiometry: 1.0
species: 575785
type: SpeciesReference

591327
stoichiometry: 1.0
species: 575785
type: SpeciesReference

583565
units: 456180
value: 0.0
type: LocalParameter

592256
units: 456180
value: 0.0
type: LocalParameter

586510
units: 456180
value: 1000.0
type: LocalParameter

519060
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species: 575090
type: SpeciesReference

564817
stoichiometry: 1.0
species: 576370
type: SpeciesReference

591328
units: 456180
value: 0.0
type: LocalParameter

587257
units: 456180
value: 1000.0
type: LocalParameter

576097
notes: FORMULA: O2S10Fe4R CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: SufBCD with two bound [2Fe-2S] clusters
type: Species

583563
units: 456180
value: 1000.0
type: LocalParameter

591181
units: 456180
value: 0.0
type: LocalParameter

540108
stoichiometry: 1.0
species: 577896
type: SpeciesReference

589912
units: 456180
value: 0.0
type: LocalParameter

587029
units: 456180
value: 0.0
type: LocalParameter

535030
stoichiometry: 1.0
species: 575294
type: SpeciesReference

595984
units: 456180
value: 0.0
type: LocalParameter

584363
units: 456180
value: 0.0
type: LocalParameter

579499
reactant: 504147
name: deoxyadenylate kinase
kinetic law: 504195
product: 504171
reactant: 504159
type: Reaction
notes: GENE_ASSOCIATION: b0474 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 2.7.4.11
reversible: true
fast: false
product: 504183

578252
kinetic law: 459394
reactant: 459381
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: N-Acetyl-D-glucosamine 1-phosphate exchange
type: Reaction

502888
stoichiometry: 1.0
species: 574373
type: SpeciesReference

511231
stoichiometry: 1.0
species: 574373
type: SpeciesReference

587250
units: 456180
value: 0.0
type: LocalParameter

473962
stoichiometry: 1.0
species: 577887
type: SpeciesReference

589913
units: 456180
value: 0.0
type: LocalParameter

584364
units: 456180
value: 1000.0
type: LocalParameter

519651
stoichiometry: 1.0
species: 577887
type: SpeciesReference

595983
units: 456180
value: 0.0
type: LocalParameter

593854
units: 456180
value: 0.0
type: LocalParameter

525979
stoichiometry: 1.0
species: 575030
type: SpeciesReference

546540
stoichiometry: 1.0
species: 574155
type: SpeciesReference

602045
stoichiometry: 1.0
species: 575857
type: SpeciesReference

603967
stoichiometry: 1.0
species: 575090
type: SpeciesReference

574100
notes: FORMULA: C6H9NOS CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 4-Methyl-5-(2-hydroxyethyl)-thiazole
type: Species

589300
units: 456180
value: 1000.0
type: LocalParameter

548929
stoichiometry: 1.0
species: 575315
type: SpeciesReference

587251
units: 456180
value: 1000.0
type: LocalParameter

579497
reversible: false
name: D-Amino acid dehydrogenase
product: 504039
product: 504027
kinetic law: 504063
product: 504051
reactant: 504015
reactant: 504003
type: Reaction
fast: false
reactant: 503991
notes: GENE_ASSOCIATION: b1189 SUBSYSTEM: Alanine and Aspartate Metabolism EC Number: 1.4.99.1

517600
stoichiometry: 1.0
species: 577896
type: SpeciesReference

593233
units: 456180
value: 0.0
type: LocalParameter

593853
units: 456180
value: 1000.0
type: LocalParameter

567859
stoichiometry: 1.0
species: 575785
type: SpeciesReference

466989
stoichiometry: 1.0
species: 576496
type: SpeciesReference

566277
stoichiometry: 1.0
species: 575872
type: SpeciesReference

588960
units: 456180
value: 0.0
type: LocalParameter

593232
units: 456180
value: 0.0
type: LocalParameter

577730
notes: FORMULA: C35H52N6O13Fe CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: coprogen
type: Species

510833
stoichiometry: 1.0
species: 573862
type: SpeciesReference

589301
units: 456180
value: 0.0
type: LocalParameter

595981
units: 456180
value: 0.0
type: LocalParameter

504231
stoichiometry: 1.0
species: 574540
type: SpeciesReference

579498
fast: false
product: 504111
product: 504123
reactant: 504075
reversible: false
notes: GENE_ASSOCIATION: b1623 SUBSYSTEM: Nucleotide Salvage Pathway EC Number:
kinetic law: 504135
type: Reaction
reactant: 504099
name: Deoxyadenosine deaminase
reactant: 504087

584366
units: 456180
value: 0.0
type: LocalParameter

486813
stoichiometry: 2.0
species: 574239
type: SpeciesReference

578253
kinetic law: 459418
reactant: 459406
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: N-Acetyl-D-mannosamine exchange
type: Reaction

531559
stoichiometry: 1.0
species: 575036
type: SpeciesReference

520269
stoichiometry: 2.0
species: 575090
type: SpeciesReference

587253
units: 456180
value: 0.0
type: LocalParameter

589910
units: 456180
value: 1000.0
type: LocalParameter

577731
notes: FORMULA: C35H52N6O13 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: coprogen unloaded (no Fe(III))
type: Species

584367
units: 456180
value: 0.0
type: LocalParameter

595980
units: 456180
value: 1000.0
type: LocalParameter

579495
kinetic law: 503979
product: 503967
reactant: 503955
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-lactate transport via diffusion (extracellular to periplasm)
type: Reaction

574106
notes: FORMULA: C4H6NO7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 4-Phospho-L-aspartate
type: Species

593851
units: 456180
value: -1000.0
type: LocalParameter

593629
units: 456180
value: 0.0
type: LocalParameter

595988
units: 456180
value: 0.0
type: LocalParameter

582191
units: 456180
value: 1000.0
type: LocalParameter

589916
units: 456180
value: 1000.0
type: LocalParameter

587024
units: 456180
value: 0.0
type: LocalParameter

500326
stoichiometry: 1.0
species: 574239
type: SpeciesReference

487874
stoichiometry: 1.0
species: 575123
type: SpeciesReference

589303
units: 456180
value: 0.0
type: LocalParameter

477905
stoichiometry: 1.0
species: 574766
type: SpeciesReference

572608
stoichiometry: 1.0
species: 573920
type: SpeciesReference

471644
stoichiometry: 1.0
species: 575090
type: SpeciesReference

588962
units: 456180
value: 0.0
type: LocalParameter

514073
stoichiometry: 1.0
species: 575192
type: SpeciesReference

586099
units: 456180
value: 0.0
type: LocalParameter

567642
stoichiometry: 1.0
species: 577781
type: SpeciesReference

509373
stoichiometry: 1.0
species: 575243
type: SpeciesReference

530927
stoichiometry: 1.0
species: 574967
type: SpeciesReference

616383
stoichiometry: 1.0
species: 575785
type: SpeciesReference

578406
kinetic law: 461880
reactant: 461867
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-Glucose 1-phosphate exchange
type: Reaction

593850
units: 456180
value: 0.0
type: LocalParameter

584360
units: 456180
value: 0.0
type: LocalParameter

577734
notes: FORMULA: C7H15NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Carnitine
type: Species

568549
stoichiometry: 1.0
species: 575054
type: SpeciesReference

595987
units: 456180
value: 0.0
type: LocalParameter

589917
units: 456180
value: 0.0
type: LocalParameter

618093
stoichiometry: 1.0
species: 576226
type: SpeciesReference

517831
stoichiometry: 1.0
species: 574295
type: SpeciesReference

589304
units: 456180
value: 0.0
type: LocalParameter

577733
notes: FORMULA: C7H15NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Carnitine
type: Species

576091
notes: FORMULA: H8O2S6R CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: SufBCD scaffold complex
type: Species

578409
kinetic law: 461929
reactant: 461917
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: sn-Glycero-3-phosphoethanolamine exchange
type: Reaction

526613
stoichiometry: 1.0
species: 574874
type: SpeciesReference

617138
stoichiometry: 1.0
species: 578144
type: SpeciesReference

578250
kinetic law: 459369
reactant: 459357
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: N-Acetyl-D-glucosamine exchange
type: Reaction

579493
reactant: 503846
name: cytidylate kinase (dCMP)
product: 503871
reversible: true
reactant: 503834
kinetic law: 503883
fast: false
notes: GENE_ASSOCIATION: b0910 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 2.7.4.14
product: 503859
type: Reaction

574104
notes: FORMULA: C6H8NO4PS CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 4-Methyl-5-(2-phosphoethyl)-thiazole
type: Species

602726
stoichiometry: 1.0
species: 575090
type: SpeciesReference

603413
stoichiometry: 1.0
species: 576016
type: SpeciesReference

593627
units: 456180
value: 1000.0
type: LocalParameter

481185
stoichiometry: 1.0
species: 574177
type: SpeciesReference

589914
units: 456180
value: 0.0
type: LocalParameter

587026
units: 456180
value: 1000.0
type: LocalParameter

589305
units: 456180
value: 1000.0
type: LocalParameter

540436
stoichiometry: 1.0
species: 575168
type: SpeciesReference

524598
stoichiometry: 1.0
species: 575920
type: SpeciesReference

586097
units: 456180
value: 1000.0
type: LocalParameter

588750
units: 456180
value: 1000.0
type: LocalParameter

588964
units: 456180
value: 1000.0
type: LocalParameter

578408
kinetic law: 461904
reactant: 461892
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: sn-Glycero-3-phosphocholine exchange
type: Reaction

579494
product: 503931
notes: GENE_ASSOCIATION: (b3603 or b2975) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 503907
reactant: 503895
name: D-lactate transport via proton symport (periplasm)
product: 503919
fast: false
type: Reaction
kinetic law: 503943
reversible: true

595985
units: 456180
value: 1000.0
type: LocalParameter

582190
units: 456180
value: 0.0
type: LocalParameter

577736
notes: FORMULA: C4H5N3O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Cytosine
type: Species

593626
units: 456180
value: 0.0
type: LocalParameter

589307
units: 456180
value: 0.0
type: LocalParameter

584362
units: 456180
value: 0.0
type: LocalParameter

587027
units: 456180
value: 0.0
type: LocalParameter

577020
notes: FORMULA: C2H3O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Glycolate
type: Species

586096
units: 456180
value: 0.0
type: LocalParameter

562066
stoichiometry: 1.0
species: 575354
type: SpeciesReference

574102
notes: FORMULA: C6H9O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 4-Methyl-2-oxopentanoate
type: Species

479229
stoichiometry: 1.0
species: 574373
type: SpeciesReference

551865
stoichiometry: 1.0
species: 575030
type: SpeciesReference

588963
units: 456180
value: 0.0
type: LocalParameter

530311
stoichiometry: 1.0
species: 574970
type: SpeciesReference

501998
stoichiometry: 1.0
species: 575090
type: SpeciesReference

591330
units: 456180
value: 0.0
type: LocalParameter

603292
stoichiometry: 1.0
species: 574991
type: SpeciesReference

581079
type: Reaction
reactant: 583451
product: 583548
product: 583487
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 583391
name: phosphatidylglycerol transport via ABC system (n-C14:0, periplasm)
reversible: false
kinetic law: 583660
product: 583598
reactant: 583355
product: 583560
fast: false

463704
stoichiometry: 1.0
species: 577149
type: SpeciesReference

578259
kinetic law: 459514
reactant: 459502
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: O-Acetyl-L-serine exchange
type: Reaction

534402
stoichiometry: 1.0
species: 575033
type: SpeciesReference

499938
stoichiometry: 1.0
species: 574509
type: SpeciesReference

504015
stoichiometry: 1.0
species: 575099
type: SpeciesReference

492847
stoichiometry: 1.0
species: 575090
type: SpeciesReference

593636
units: 456180
value: 0.0
type: LocalParameter

515166
stoichiometry: 1.0
species: 575090
type: SpeciesReference

457765
stoichiometry: 0.241055
species: 574355
type: SpeciesReference

582184
units: 456180
value: 0.0
type: LocalParameter

593238
units: 456180
value: 0.0
type: LocalParameter

582888
units: 456180
value: 0.0
type: LocalParameter

578414
kinetic law: 462001
reactant: 461989
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Glycerophosphoserine exchange
type: Reaction

561958
stoichiometry: 1.0
species: 575474
type: SpeciesReference

588740
units: 456180
value: 0.0
type: LocalParameter

583135
units: 456180
value: 0.0
type: LocalParameter

594481
units: 456180
value: 0.0
type: LocalParameter

586095
units: 456180
value: 0.0
type: LocalParameter

593637
units: 456180
value: 0.0
type: LocalParameter

591745
units: 456180
value: 1000.0
type: LocalParameter

583134
units: 456180
value: 0.0
type: LocalParameter

553218
stoichiometry: 1.0
species: 574871
type: SpeciesReference

593239
units: 456180
value: 0.0
type: LocalParameter

582183
units: 456180
value: 1000.0
type: LocalParameter

582887
units: 456180
value: 0.0
type: LocalParameter

501560
stoichiometry: 1.0
species: 578015
type: SpeciesReference

578415
kinetic law: 462025
reactant: 462013
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-Glucose 6-phosphate exchange
type: Reaction

587471
units: 456180
value: 0.0
type: LocalParameter

466531
stoichiometry: 1.0
species: 577494
type: SpeciesReference

581076
notes: GENE_ASSOCIATION: ((b0902 and b0903) or (b0902 and b3114) or (b3951 and b3952) or ((b0902 and b0903) and b2579)) SUBSYSTEM: Pyruvate Metabolism EC Number:
reactant: 582529
product: 582649
name: pyruvate formate lyase
type: Reaction
product: 582772
fast: false
kinetic law: 582820
reversible: false
reactant: 582565

586092
units: 456180
value: 1000.0
type: LocalParameter

566494
stoichiometry: 1.0
species: 578003
type: SpeciesReference

583136
units: 456180
value: 1000.0
type: LocalParameter

594480
units: 456180
value: 1000.0
type: LocalParameter

584370
units: 456180
value: 1000.0
type: LocalParameter

589919
units: 456180
value: 0.0
type: LocalParameter

578416
stoichiometry: 1.0
species: 575099
type: SpeciesReference

582182
units: 456180
value: 0.0
type: LocalParameter

547541
stoichiometry: 1.0
species: 577922
type: SpeciesReference

593634
units: 456180
value: 0.0
type: LocalParameter

591744
units: 456180
value: 0.0
type: LocalParameter

577023
notes: FORMULA: C10H12N5O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: GMP
type: Species

588742
units: 456180
value: 0.0
type: LocalParameter

586093
units: 456180
value: 0.0
type: LocalParameter

495507
stoichiometry: 1.0
species: 574439
type: SpeciesReference

593849
units: 456180
value: 0.0
type: LocalParameter

581078
reactant: 583015
reactant: 582967
product: 583111
product: 583159
product: 583196
product: 583221
type: Reaction
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: false
kinetic law: 583270
name: phosphatidylglycerol transport via ABC system (n-C12:0, periplasm)
reactant: 583063
fast: false