171344
constant: true
size: 1.0
spatial dimensions: 3.0
name: compartment
type: Compartment

COPASI54
constant: true
value: 1.0E8
name: kplus
type: Parameter

981349
stoichiometry: 1.0
species: COPASI26
type: SpeciesReference

980443
stoichiometry: 1.0
species: COPASI25
type: SpeciesReference

COPASI97
kinetic law: 980575
product: 980563
product: 980551
product: 980539
reactant: 980527
fast: false
reversible: false
name: RNAPcat2
type: Reaction

980118
stoichiometry: 1.0
species: COPASI6
type: SpeciesReference

981493
stoichiometry: 1.0
species: COPASI8
type: SpeciesReference

COPASI20
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNaseHA1rI1
type: Species

981565
stoichiometry: 1.0
species: COPASI39
type: SpeciesReference

COPASI40
constant: true
value: 1.0E-7
name: T12tot
type: Parameter

980962
stoichiometry: 1.0
species: COPASI6
type: SpeciesReference

981059
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

980731
stoichiometry: 1.0
species: COPASI20
type: SpeciesReference

981638
stoichiometry: 1.0
species: COPASI39
type: SpeciesReference

COPASI87
kinetic law: 980045
product: 980033
reactant: 980020
reactant: 980008
fast: false
reversible: false
name: Annihilation1
type: Reaction

COPASI34
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: T23A3sI3
type: Species

COPASI55
constant: true
value: 1.0E8
name: kplusH
type: Parameter

981722
stoichiometry: 1.0
species: COPASI34
type: SpeciesReference

COPASI96
kinetic law: 980515
product: 980503
product: 980491
product: 980479
reactant: 980467
fast: false
reversible: false
name: RNAPcat1
type: Reaction

980419
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

980057
stoichiometry: 1.0
species: COPASI3
type: SpeciesReference

979960
stoichiometry: 1.0
species: COPASI4
type: SpeciesReference

COPASI86
kinetic law: 979996
product: 979984
reactant: 979972
reactant: 979960
fast: false
reversible: false
name: Activation2
type: Reaction

COPASI41
constant: true
value: 1.0E-7
name: T31tot
type: Parameter

981143
stoichiometry: 1.0
species: COPASI6
type: SpeciesReference

981409
stoichiometry: 1.0
species: COPASI28
type: SpeciesReference

COPASI21
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNaseHA2rI2
type: Species

COPASI35
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: T31A1sI1
type: Species

980347
stoichiometry: 1.0
species: COPASI24
type: SpeciesReference

980828
stoichiometry: 1.0
species: COPASI30
type: SpeciesReference

COPASI3
constant: false
boundary condition: false
has only substance units: false
initial concentration: 2.0E-7
initial amount: NaN
in compartment: 171344
name: A2
type: Species

980912
stoichiometry: 1.0
species: COPASI12
type: SpeciesReference

980431
stoichiometry: 1.0
species: COPASI4
type: SpeciesReference

980106
stoichiometry: 1.0
species: COPASI12
type: SpeciesReference

COPASI85
kinetic law: 979948
product: 979936
reactant: 979923
reactant: 979911
fast: false
reversible: false
name: Activation1
type: Reaction

COPASI22
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.2E-7
initial amount: NaN
in compartment: 171344
name: T23
type: Species

COPASI2
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.0E-7
initial amount: NaN
in compartment: 171344
name: T12
type: Species

COPASI42
constant: true
value: 3.0E-7
name: A1tot
type: Parameter

COPASI52
constant: true
value: 8410.0
name: kTAI12
type: Parameter

COPASI71
constant: true
value: 167.0
name: kminusOFF31
type: Parameter

COPASI32
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: A3rI3
type: Species

COPASI99
kinetic law: 980695
product: 980683
product: 980671
product: 980659
reactant: 980647
fast: false
reversible: false
name: RNAPcat4
type: Reaction

980974
stoichiometry: 1.0
species: COPASI22
type: SpeciesReference

980755
stoichiometry: 1.0
species: COPASI15
type: SpeciesReference

980069
stoichiometry: 1.0
species: COPASI8
type: SpeciesReference

980154
stoichiometry: 1.0
species: COPASI9
type: SpeciesReference

982227
stoichiometry: 1.0
species: COPASI23
type: SpeciesReference

COPASI43
constant: true
value: 4.0E-7
name: A3tot
type: Parameter

COPASI4
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.0E-7
initial amount: NaN
in compartment: 171344
name: T31
type: Species

COPASI84
constant: true
value: 0.59
name: ksminus3
type: Parameter

981734
stoichiometry: 1.0
species: COPASI8
type: SpeciesReference

COPASI23
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: T23A3
type: Species

COPASI120
kinetic law: 981794
product: 981782
reactant: 981770
reactant: 981758
fast: false
reversible: true
name: RNaseHbinding3
type: Reaction

981903
stoichiometry: 1.0
species: COPASI7
type: SpeciesReference

COPASI53
constant: true
value: 6430.0
name: kAI3
type: Parameter

980503
stoichiometry: 1.0
species: COPASI7
type: SpeciesReference

COPASI98
kinetic law: 980635
product: 980623
product: 980611
product: 980599
reactant: 980587
fast: false
reversible: false
name: RNAPcat3
type: Reaction

COPASI70
constant: true
value: 13.5
name: kminusON31
type: Parameter

COPASI33
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNaseHA3rI3
type: Species

981445
stoichiometry: 1.0
species: COPASI27
type: SpeciesReference

COPASI83
constant: true
value: 6730.0
name: ksplus3
type: Parameter

980767
stoichiometry: 1.0
species: COPASI13
type: SpeciesReference

980033
stoichiometry: 1.0
species: COPASI11
type: SpeciesReference

COPASI44
constant: true
value: 2.0E-7
name: A2tot
type: Parameter

980008
stoichiometry: 1.0
species: COPASI5
type: SpeciesReference

COPASI5
constant: false
boundary condition: false
has only substance units: false
initial concentration: 3.0E-7
initial amount: NaN
in compartment: 171344
name: A1
type: Species

COPASI93
kinetic law: 980359
product: 980347
reactant: 980335
reactant: 980323
fast: false
reversible: true
name: RNAPbinding2
type: Reaction

COPASI58
constant: true
value: 30.7
name: kminusON23
type: Parameter

COPASI30
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: A1sI1
type: Species

980467
stoichiometry: 1.0
species: COPASI16
type: SpeciesReference

COPASI111
kinetic law: 981324
product: 981312
product: 981299
product: 981287
reactant: 981275
fast: false
reversible: false
name: RNAPcat7
type: Reaction

981179
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

COPASI73
constant: true
value: 0.028
name: kcatOFF31
type: Parameter

COPASI63
constant: true
value: 0.017
name: kcatOFF12
type: Parameter

COPASI121
kinetic law: 981842
product: 981830
product: 981818
reactant: 981806
fast: false
reversible: false
name: RNaseHcat3
type: Reaction

982069
stoichiometry: 1.0
species: COPASI22
type: SpeciesReference

980395
stoichiometry: 1.0
species: COPASI17
type: SpeciesReference

981167
stoichiometry: 1.0
species: COPASI25
type: SpeciesReference

COPASI45
constant: true
value: 8.34E-8
name: RNAPtot
type: Parameter

COPASI6
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: rI3
type: Species

981191
stoichiometry: 1.0
species: COPASI4
type: SpeciesReference

COPASI82
constant: true
value: 0.62
name: ksminus2
type: Parameter

980987
stoichiometry: 1.0
species: COPASI32
type: SpeciesReference

980299
stoichiometry: 1.0
species: COPASI16
type: SpeciesReference

981251
stoichiometry: 1.0
species: COPASI29
type: SpeciesReference

981239
stoichiometry: 1.0
species: COPASI28
type: SpeciesReference

COPASI92
kinetic law: 980311
product: 980299
reactant: 980287
reactant: 980275
fast: false
reversible: true
name: RNAPbinding1
type: Reaction

COPASI31
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: A3sI3
type: Species

982251
stoichiometry: 1.0
species: COPASI34
type: SpeciesReference

981915
stoichiometry: 1.0
species: COPASI30
type: SpeciesReference

COPASI113
kinetic law: 981421
product: 981409
reactant: 981397
reactant: 981385
fast: false
reversible: true
name: sI2binding2
type: Reaction

COPASI59
constant: true
value: 109.0
name: kminusOFF23
type: Parameter

COPASI112
kinetic law: 981373
product: 981361
reactant: 981349
reactant: 981336
fast: false
reversible: true
name: sI2binding1
type: Reaction

COPASI72
constant: true
value: 0.078
name: kcatON31
type: Parameter

COPASI62
constant: true
value: 0.061
name: kcatON12
type: Parameter

982239
stoichiometry: 1.0
species: COPASI37
type: SpeciesReference

COPASI122
kinetic law: 981890
product: 981878
reactant: 981866
reactant: 981854
fast: false
reversible: false
name: sI1activation
type: Reaction

979923
stoichiometry: 1.0
species: COPASI3
type: SpeciesReference

COPASI81
constant: true
value: 13100.0
name: ksplus2
type: Parameter

COPASI46
constant: true
value: 1.04E-8
name: RNaseHtot
type: Parameter

COPASI124
kinetic law: 982003
product: 981990
reactant: 981977
reactant: 981964
fast: false
reversible: true
name: sI1binding1
type: Reaction

COPASI7
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: rI1
type: Species

981939
stoichiometry: 1.0
species: COPASI36
type: SpeciesReference

COPASI95
kinetic law: 980455
product: 980443
reactant: 980431
reactant: 980419
fast: false
reversible: true
name: RNAPbinding4
type: Reaction

981433
stoichiometry: 1.0
species: COPASI2
type: SpeciesReference

980779
stoichiometry: 1.0
species: COPASI21
type: SpeciesReference

COPASI56
constant: true
value: 31.6
name: kminusON12
type: Parameter

COPASI75
constant: true
value: 4120.0
name: ksplus1
type: Parameter

981553
stoichiometry: 1.0
species: COPASI35
type: SpeciesReference

COPASI123
kinetic law: 981951
product: 981939
product: 981927
reactant: 981915
reactant: 981903
fast: false
reversible: false
name: sI1annihilation
type: Reaction

COPASI61
constant: true
value: 10.6
name: kminusH2
type: Parameter

COPASI80
constant: true
value: 0.285
name: kcatH3
type: Parameter

981927
stoichiometry: 1.0
species: COPASI11
type: SpeciesReference

COPASI8
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: rI2
type: Species

COPASI47
constant: true
value: 3330.0
name: kTA23
type: Parameter

COPASI125
kinetic law: 982056
product: 982042
reactant: 982029
reactant: 982016
fast: false
reversible: true
name: sI1binding2
type: Reaction

COPASI94
kinetic law: 980407
product: 980395
reactant: 980383
reactant: 980371
fast: false
reversible: true
name: RNAPbinding3
type: Reaction

980383
stoichiometry: 1.0
species: COPASI2
type: SpeciesReference

COPASI57
constant: true
value: 130.0
name: kminusOFF12
type: Parameter

980659
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

COPASI74
constant: true
value: 1.2E-7
name: T23tot
type: Parameter

COPASI110
kinetic law: 981263
product: 981251
reactant: 981239
reactant: 981227
fast: false
reversible: true
name: RNAPbinding7
type: Reaction

979911
stoichiometry: 1.0
species: COPASI2
type: SpeciesReference

980551
stoichiometry: 1.0
species: COPASI23
type: SpeciesReference

980130
stoichiometry: 1.0
species: COPASI32
type: SpeciesReference

982016
stoichiometry: 1.0
species: COPASI10
type: SpeciesReference

COPASI60
constant: true
value: 27.6
name: kminusH1
type: Parameter

981830
stoichiometry: 1.0
species: COPASI31
type: SpeciesReference

MODEL1012090006
parameter: COPASI41
parameter: COPASI81
reaction: COPASI122
parameter: COPASI83
reaction: COPASI101
parameter: COPASI63
reaction: COPASI110
species: COPASI11
species: COPASI4
species: COPASI17
species: COPASI30
curated: false
reaction: COPASI86
parameter: COPASI77
species: COPASI32
reaction: COPASI116
parameter: COPASI65
reaction: COPASI118
notes: This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information. In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not.. To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.
reaction: COPASI125
species: COPASI29
reaction: COPASI104
area units: area
reaction: COPASI106
reaction: COPASI98
species: COPASI25
parameter: COPASI56
reaction: COPASI127
reaction: COPASI113
parameter: COPASI58
initial assignment: MODEL1012090006#
reaction: COPASI129
species: COPASI6
reaction: COPASI109
species: COPASI37
species: COPASI8
reaction: COPASI92
parameter: COPASI44
reaction: COPASI94
parameter: COPASI50
parameter: COPASI52
reaction: COPASI91
reaction: COPASI89
parameter: COPASI68
reaction: COPASI97
parameter: COPASI74
parameter: COPASI40
name: Kim2011_Oscillator_ExtendedIII
reaction: COPASI121
species: COPASI38
parameter: COPASI80
type: SBMLModel
parameter: COPASI60
reaction: COPASI85
parameter: COPASI62
parameter: COPASI64
species: COPASI31
species: COPASI21
reaction: COPASI115
reaction: COPASI117
species: COPASI33
reaction: COPASI112
reaction: COPASI103
parameter: COPASI76
parameter: COPASI55
parameter: COPASI49
substance units: substance
parameter: COPASI79
parameter: COPASI43
species: COPASI34
reaction: COPASI124
species: COPASI20
species: COPASI18
species: COPASI9
species: COPASI12
time units: time
parameter: COPASI67
parameter: COPASI71
species: COPASI14
parameter: COPASI69

981336
stoichiometry: 1.0
species: COPASI3
type: SpeciesReference

981758
stoichiometry: 1.0
species: COPASI15
type: SpeciesReference

981698
stoichiometry: 1.0
species: COPASI38
type: SpeciesReference

981083
stoichiometry: 1.0
species: COPASI19
type: SpeciesReference

981866
stoichiometry: 1.0
species: COPASI30
type: SpeciesReference

COPASI17
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT12
type: Species

981011
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

COPASI77
constant: true
value: 0.0
name: rI1init
type: Parameter

981990
stoichiometry: 1.0
species: COPASI30
type: SpeciesReference

981505
stoichiometry: 1.0
species: COPASI13
type: SpeciesReference

COPASI105
kinetic law: 980999
product: 980987
product: 980974
reactant: 980962
reactant: 980950
fast: false
reversible: false
name: Inhibition3
type: Reaction

981287
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

COPASI9
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: T12A2
type: Species

979936
stoichiometry: 1.0
species: COPASI9
type: SpeciesReference

980647
stoichiometry: 1.0
species: COPASI19
type: SpeciesReference

982155
stoichiometry: 1.0
species: COPASI37
type: SpeciesReference

COPASI37
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: sI3
type: Species

982191
stoichiometry: 1.0
species: COPASI37
type: SpeciesReference

COPASI67
constant: true
value: 0.211
name: kcatH2
type: Parameter

COPASI115
kinetic law: 981529
product: 981517
product: 981505
reactant: 981493
reactant: 981481
fast: false
reversible: false
name: sI2annihilation
type: Reaction

980876
stoichiometry: 1.0
species: COPASI27
type: SpeciesReference

COPASI16
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT12A2
type: Species

980275
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

980864
stoichiometry: 1.0
species: COPASI15
type: SpeciesReference

981602
stoichiometry: 1.0
species: COPASI34
type: SpeciesReference

COPASI104
kinetic law: 980938
product: 980926
reactant: 980912
reactant: 980900
fast: false
reversible: false
name: Activation3
type: Reaction

COPASI76
constant: true
value: 0.83
name: ksminus1
type: Parameter

980563
stoichiometry: 1.0
species: COPASI8
type: SpeciesReference

980707
stoichiometry: 1.0
species: COPASI15
type: SpeciesReference

980214
stoichiometry: 1.0
species: COPASI10
type: SpeciesReference

COPASI114
kinetic law: 981469
product: 981457
reactant: 981445
reactant: 981433
fast: false
reversible: false
name: sI2activation
type: Reaction

COPASI36
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: sI1
type: Species

COPASI66
constant: true
value: 0.085
name: kcatH1
type: Parameter

COPASI29
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT12A2sI2
type: Species

981023
stoichiometry: 1.0
species: COPASI23
type: SpeciesReference

980081
stoichiometry: 1.0
species: COPASI13
type: SpeciesReference

981782
stoichiometry: 1.0
species: COPASI33
type: SpeciesReference

COPASI100
kinetic law: 980743
product: 980731
reactant: 980719
reactant: 980707
fast: false
reversible: true
name: RNaseHbinding1
type: Reaction

981854
stoichiometry: 1.0
species: COPASI4
type: SpeciesReference

982029
stoichiometry: 1.0
species: COPASI36
type: SpeciesReference

COPASI19
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT23
type: Species

COPASI90
kinetic law: 980202
product: 980190
product: 980178
reactant: 980166
reactant: 980154
fast: false
reversible: false
name: Inhibition1
type: Reaction

981227
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

COPASI103
kinetic law: 980888
product: 980876
product: 980864
reactant: 980852
fast: false
reversible: false
name: RNaseHcat2
type: Reaction

982143
stoichiometry: 1.0
species: COPASI32
type: SpeciesReference

981517
stoichiometry: 1.0
species: COPASI26
type: SpeciesReference

COPASI79
constant: true
value: 9.0
name: kminusH3
type: Parameter

COPASI49
constant: true
value: 10400.0
name: kAI1
type: Parameter

COPASI65
constant: true
value: 0.027
name: kcatOFF23
type: Parameter

COPASI39
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT31A1sI1
type: Species

COPASI117
kinetic law: 981626
product: 981614
reactant: 981602
reactant: 981589
fast: false
reversible: true
name: RNAPbinding9
type: Reaction

980020
stoichiometry: 1.0
species: COPASI7
type: SpeciesReference

981541
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

981275
stoichiometry: 1.0
species: COPASI29
type: SpeciesReference

982179
stoichiometry: 1.0
species: COPASI12
type: SpeciesReference

COPASI64
constant: true
value: 0.078
name: kcatON23
type: Parameter

980852
stoichiometry: 1.0
species: COPASI21
type: SpeciesReference

981361
stoichiometry: 1.0
species: COPASI27
type: SpeciesReference

COPASI101
kinetic law: 980791
product: 980779
reactant: 980767
reactant: 980755
fast: false
reversible: true
name: RNaseHbinding2
type: Reaction

COPASI28
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: T12A2sI2
type: Species

980287
stoichiometry: 1.0
species: COPASI9
type: SpeciesReference

COPASI18
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT23A3
type: Species

980491
stoichiometry: 1.0
species: COPASI9
type: SpeciesReference

980479
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

COPASI91
kinetic law: 980263
product: 980251
product: 980238
reactant: 980226
reactant: 980214
fast: false
reversible: false
name: Inhibition2
type: Reaction

980226
stoichiometry: 1.0
species: COPASI7
type: SpeciesReference

COPASI78
constant: true
value: 0.0
name: rI2init
type: Parameter

COPASI48
constant: true
value: 3940.0
name: kTA12
type: Parameter

COPASI102
kinetic law: 980840
product: 980828
product: 980816
reactant: 980803
fast: false
reversible: false
name: RNaseHcat1
type: Reaction

COPASI116
kinetic law: 981577
product: 981565
reactant: 981553
reactant: 981541
fast: false
reversible: true
name: RNAPbinding8
type: Reaction

COPASI38
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT23A3sI3
type: Species

981589
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

981107
stoichiometry: 1.0
species: COPASI24
type: SpeciesReference

COPASI27
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: A2sI2
type: Species

981964
stoichiometry: 1.0
species: COPASI5
type: SpeciesReference

COPASI129
kinetic law: 982264
product: 982251
reactant: 982239
reactant: 982227
fast: false
reversible: true
name: sI3binding2
type: Reaction

COPASI50
constant: true
value: 42400.0
name: kAI2
type: Parameter

COPASI11
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: A1rI1
type: Species

COPASI13
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: A2rI2
type: Species

982131
stoichiometry: 1.0
species: COPASI31
type: SpeciesReference

980623
stoichiometry: 1.0
species: COPASI7
type: SpeciesReference

981131
stoichiometry: 1.0
species: COPASI10
type: SpeciesReference

981312
stoichiometry: 1.0
species: COPASI7
type: SpeciesReference

980539
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

981674
stoichiometry: 1.0
species: COPASI6
type: SpeciesReference

COPASI119
kinetic law: 981746
product: 981734
product: 981722
product: 981710
reactant: 981698
fast: false
reversible: false
name: RNAPcat9
type: Reaction

982203
stoichiometry: 1.0
species: COPASI31
type: SpeciesReference

981818
stoichiometry: 1.0
species: COPASI15
type: SpeciesReference

979984
stoichiometry: 1.0
species: COPASI10
type: SpeciesReference

981035
stoichiometry: 1.0
species: COPASI18
type: SpeciesReference

981770
stoichiometry: 1.0
species: COPASI32
type: SpeciesReference

980683
stoichiometry: 1.0
species: COPASI8
type: SpeciesReference

982042
stoichiometry: 1.0
species: COPASI35
type: SpeciesReference

980166
stoichiometry: 1.0
species: COPASI8
type: SpeciesReference

COPASI109
kinetic law: 981215
product: 981203
product: 981191
product: 981179
reactant: 981167
fast: false
reversible: false
name: RNAPcat6
type: Reaction

COPASI26
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: sI2
type: Species

COPASI51
constant: true
value: 6350.0
name: kTAI23
type: Parameter

982082
stoichiometry: 1.0
species: COPASI31
type: SpeciesReference

COPASI128
kinetic law: 982215
product: 982203
reactant: 982191
reactant: 982179
fast: false
reversible: true
name: sI3binding1
type: Reaction

980587
stoichiometry: 1.0
species: COPASI17
type: SpeciesReference

980190
stoichiometry: 1.0
species: COPASI13
type: SpeciesReference

COPASI10
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: T31A1
type: Species

COPASI12
constant: false
boundary condition: false
has only substance units: false
initial concentration: 4.0E-7
initial amount: NaN
in compartment: 171344
name: A3
type: Species

980238
stoichiometry: 1.0
species: COPASI4
type: SpeciesReference

981662
stoichiometry: 1.0
species: COPASI35
type: SpeciesReference

COPASI118
kinetic law: 981686
product: 981674
product: 981662
product: 981650
reactant: 981638
fast: false
reversible: false
name: RNAPcat8
type: Reaction

980251
stoichiometry: 1.0
species: COPASI11
type: SpeciesReference

980816
stoichiometry: 1.0
species: COPASI15
type: SpeciesReference

981397
stoichiometry: 1.0
species: COPASI26
type: SpeciesReference

980335
stoichiometry: 1.0
species: COPASI10
type: SpeciesReference

COPASI108
kinetic law: 981155
product: 981143
product: 981131
product: 981119
reactant: 981107
fast: false
reversible: false
name: RNAPcat5
type: Reaction

981457
stoichiometry: 1.0
species: COPASI28
type: SpeciesReference

980611
stoichiometry: 1.0
species: COPASI2
type: SpeciesReference

981203
stoichiometry: 1.0
species: COPASI6
type: SpeciesReference

980527
stoichiometry: 1.0
species: COPASI18
type: SpeciesReference

COPASI25
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT31
type: Species

COPASI127
kinetic law: 982167
product: 982155
product: 982143
reactant: 982131
reactant: 982118
fast: false
reversible: false
name: sI3annihilation
type: Reaction

COPASI15
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.04E-8
initial amount: NaN
in compartment: 171344
name: RNaseH
type: Species

COPASI89
kinetic law: 980142
product: 980130
reactant: 980118
reactant: 980106
fast: false
reversible: false
name: Annihilation3
type: Reaction

981119
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

981299
stoichiometry: 1.0
species: COPASI28
type: SpeciesReference

980803
stoichiometry: 1.0
species: COPASI20
type: SpeciesReference

980671
stoichiometry: 1.0
species: COPASI22
type: SpeciesReference

980371
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

COPASI69
constant: true
value: 4290.0
name: kTAI31
type: Parameter

981071
stoichiometry: 1.0
species: COPASI22
type: SpeciesReference

981878
stoichiometry: 1.0
species: COPASI35
type: SpeciesReference

COPASI107
kinetic law: 981095
product: 981083
reactant: 981071
reactant: 981059
fast: false
reversible: true
name: RNAPbinding6
type: Reaction

981710
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

981806
stoichiometry: 1.0
species: COPASI33
type: SpeciesReference

979972
stoichiometry: 1.0
species: COPASI5
type: SpeciesReference

980926
stoichiometry: 1.0
species: COPASI23
type: SpeciesReference

COPASI24
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT31A1
type: Species

COPASI126
kinetic law: 982106
product: 982094
reactant: 982082
reactant: 982069
fast: false
reversible: false
name: sI3activation
type: Reaction

981650
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

980178
stoichiometry: 1.0
species: COPASI2
type: SpeciesReference

980950
stoichiometry: 1.0
species: COPASI23
type: SpeciesReference

COPASI88
kinetic law: 980094
product: 980081
reactant: 980069
reactant: 980057
fast: false
reversible: false
name: Annihilation2
type: Reaction

981614
stoichiometry: 1.0
species: COPASI38
type: SpeciesReference

COPASI14
constant: false
boundary condition: false
has only substance units: false
initial concentration: 8.34E-8
initial amount: NaN
in compartment: 171344
name: RNAP
type: Species

981977
stoichiometry: 1.0
species: COPASI36
type: SpeciesReference

980719
stoichiometry: 1.0
species: COPASI11
type: SpeciesReference

982094
stoichiometry: 1.0
species: COPASI34
type: SpeciesReference

980599
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

COPASI68
constant: true
value: 3410.0
name: kTA31
type: Parameter

981385
stoichiometry: 1.0
species: COPASI9
type: SpeciesReference

981481
stoichiometry: 1.0
species: COPASI27
type: SpeciesReference

980323
stoichiometry: 1.0
species: COPASI14
type: SpeciesReference

COPASI106
kinetic law: 981047
product: 981035
reactant: 981023
reactant: 981011
fast: false
reversible: true
name: RNAPbinding5
type: Reaction

982118
stoichiometry: 1.0
species: COPASI6
type: SpeciesReference

980900
stoichiometry: 1.0
species: COPASI22
type: SpeciesReference