262482_at
type: EFO_0005072
part of: A-AFFY-2

F3H UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 4.63467186666667
p value: 0.00512188252733702
refers to: F3H
refers to: 252123_at
t statistic: 12.0282094331344

SP1L5
type: EnsemblDatabaseReference

AT2G18360
type: EnsemblDatabaseReference

COR413-PM1 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.89394196666667
p value: 0.0462346070572056
refers to: COR413-PM1
refers to: 265480_at
t statistic: 5.73422794005434

AT4G33560
type: EnsemblDatabaseReference

(Sample) genotype/cngc1-3
type: EFO_0000001
property type: genotype
property value: cngc1-3

249882_at
type: EFO_0005072
part of: A-AFFY-2

AT2G41380
type: EnsemblDatabaseReference

HY5 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.34016276666667
p value: 0.0316971762741016
refers to: 250420_at
refers to: HY5
t statistic: 6.51745270481246

SOUL-1
type: EnsemblDatabaseReference

AT4G28940
type: EnsemblDatabaseReference

Arabidopsis thaliana
type: OBI_0100026

AT3G16530
type: EnsemblDatabaseReference

AT1G51830
type: EnsemblDatabaseReference

AT3G14060
type: EnsemblDatabaseReference

AT2G41730
type: EnsemblDatabaseReference

AT1G73650 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.5653553
p value: 0.0182990369171938
refers to: AT1G73650
refers to: 260072_at
t statistic: 7.67765533473951

SP1L5
type: EnsemblDatabaseReference

ATGSTU25
type: EnsemblDatabaseReference

(Sample) germplasm/Col-0
type: EFO_0005148
property type: germplasm
property value: Col-0

AT4G33560
type: EnsemblDatabaseReference

STR17 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.697158
p value: 0.0212875356058915
refers to: 264846_at
refers to: STR17
t statistic: 7.38990683112329

pEARLI 1
type: EnsemblDatabaseReference

AT4G19810
type: EnsemblDatabaseReference

246375_at
type: EFO_0005072
part of: A-AFFY-2

ATMSRB6
type: EnsemblDatabaseReference

SOUL-1
type: EnsemblDatabaseReference

AT5G38020
type: EnsemblDatabaseReference

(Assay) GSM507030
type: Assay
has participant: A-AFFY-2

F3H
type: EnsemblDatabaseReference

AT3G14060 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.09537706666667
p value: 0.0091288635928983
refers to: AT3G14060
refers to: 258209_at
t statistic: 10.0168957233231

AT4G28940
type: EnsemblDatabaseReference

AT1G73650
type: EnsemblDatabaseReference

AT3G52740 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.2660107
p value: 0.0146259264268193
refers to: AT3G52740
refers to: 252010_at
t statistic: 8.47790785568742

LOX1
type: EnsemblDatabaseReference

AT2G41380 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.99838816666667
p value: 0.00595465701642255
refers to: AT2G41380
refers to: 266368_at
t statistic: 11.4540223453784

254240_at
type: EFO_0005072
part of: A-AFFY-2

257206_at
type: EFO_0005072
part of: A-AFFY-2

AT5G44730
type: EnsemblDatabaseReference

ATGSTU25
type: EnsemblDatabaseReference

(Assay) GSM507029
type: Assay
has participant: A-AFFY-2

AT1G22750 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.5299045
p value: 0.0241254565981499
refers to: AT1G22750
refers to: 264207_at
t statistic: 6.9288177671023

AT4G33560 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 4.08555463333334
p value: 0.00417857397101097
refers to: 253298_at
refers to: AT4G33560
t statistic: 12.7933096793412

AT1G33490
type: EnsemblDatabaseReference

pEARLI 1
type: EnsemblDatabaseReference

AT3G16530 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.20397956666667
p value: 0.0101741744369505
refers to: AT3G16530
refers to: 257206_at
t statistic: 9.3829169739274

AT4G19810
type: EnsemblDatabaseReference

ATGSTU25 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 4.58850126666667
p value: 0.00377487921322931
refers to: 262517_at
refers to: ATGSTU25
t statistic: 14.1015708231808

253666_at
type: EFO_0005072
part of: A-AFFY-2

ATMSRB6
type: EnsemblDatabaseReference

F3H
type: EnsemblDatabaseReference

AT5G38020
type: EnsemblDatabaseReference

AtMYB45 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.15740656666667
p value: 0.0236693563463833
refers to: AtMYB45
refers to: 252340_at
t statistic: 7.0094291899755

AT1G22750
type: EnsemblDatabaseReference

AT1G73650
type: EnsemblDatabaseReference

SRG1
type: EnsemblDatabaseReference

AT5G44730
type: EnsemblDatabaseReference

E-GEOD-20222
type: microarray 1colour mrna differential
RO_0002162: Arabidopsis thaliana
description: Cesium (Cs+) is a potentially toxic mineral element that is released into the environment and taken up by plants. Although Cs+ is chemically similar to potassium (K+), and much is known about K+ transport mechanisms, it is not clear through which K+ transport mechanisms Cs+ is taken up by plant roots. In this study, the role of AtHAK5 in high affinity K+ and Cs+ uptake was characterized. It is demonstrated that AtHAK5 is localized to the plasma membrane under conditions of K+ deprivation, when it is expressed. 9 samples were used in this experiment.
uses data from: pubmed

262518_at
type: EFO_0005072
part of: A-AFFY-2

(Sample) organism/Arabidopsis thaliana
type: Arabidopsis thaliana
property type: organism
property value: Arabidopsis thaliana

AT1G33490
type: EnsemblDatabaseReference

ATGSTU24
type: EnsemblDatabaseReference

AT1G14120
type: EnsemblDatabaseReference

AZI1
type: EnsemblDatabaseReference

258209_at
type: EFO_0005072
part of: A-AFFY-2

AT1G22750
type: EnsemblDatabaseReference

SRG1
type: EnsemblDatabaseReference

252123_at
type: EFO_0005072
part of: A-AFFY-2

(Sample) genotype/cngc19 knockout
type: EFO_0000001
property type: genotype
property value: cngc19 knockout

(Assay) GSM507022
type: Assay
has participant: A-AFFY-2

SOUL-1 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.0296128
p value: 0.0236693563463833
refers to: SOUL-1
refers to: 266097_at
t statistic: 6.98539976227404

AT4G28940 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.26097323333333
p value: 0.0400360628217991
refers to: AT4G28940
refers to: 253743_at
t statistic: 6.12383771301473

260522_x_at
type: EFO_0005072
part of: A-AFFY-2

HYH UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.9184209
p value: 0.0229694629116617
refers to: HYH
refers to: 258349_at
t statistic: 7.10153164237451

XTH32
type: EnsemblDatabaseReference

AT4G19810 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.68271703333334
p value: 0.0165718267529039
refers to: 254543_at
refers to: AT4G19810
t statistic: 7.96973648573157

ATGSTU24
type: EnsemblDatabaseReference

AT1G14120
type: EnsemblDatabaseReference

SRG1 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.4258097
p value: 0.01565816824326
refers to: SRG1
refers to: 262482_at
t statistic: 8.16937190947565

AZI1
type: EnsemblDatabaseReference

265341_at
type: EFO_0005072
part of: A-AFFY-2

AT5G44730 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.52240123333334
p value: 0.0165718267529039
refers to: AT5G44730
refers to: 249015_at
t statistic: 7.99508264512916

SUS4 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.45059733333334
p value: 0.0212875356058915
refers to: SUS4
refers to: 252746_at
t statistic: 7.41722392222838

255298_at
type: EFO_0005072
part of: A-AFFY-2

264207_at
type: EFO_0005072
part of: A-AFFY-2

(Factor value) GENOTYPE/wild type genotype
type: EFO_0000001
property type: GENOTYPE
property value: wild type genotype

AT3G52740
type: EnsemblDatabaseReference

263841_at
type: EFO_0005072
part of: A-AFFY-2

250420_at
type: EFO_0005072
part of: A-AFFY-2

264846_at
type: EFO_0005072
part of: A-AFFY-2

AT2G23910
type: EnsemblDatabaseReference

253743_at
type: EFO_0005072
part of: A-AFFY-2

XTH32
type: EnsemblDatabaseReference

249567_at
type: EFO_0005072
part of: A-AFFY-2

UGT74D1
type: EnsemblDatabaseReference

256424_at
type: EFO_0005072
part of: A-AFFY-2

258349_at
type: EFO_0005072
part of: A-AFFY-2

253298_at
type: EFO_0005072
part of: A-AFFY-2

256321_at
type: EFO_0005072
part of: A-AFFY-2

A-AFFY-2
type: EFO_0000269

AT1G33490 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.1092732
p value: 0.0357416956774618
refers to: AT1G33490
refers to: 256424_at
t statistic: 6.27329288916935

AT2G41730 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.17418543333333
p value: 0.01565816824326
refers to: AT2G41730
refers to: 260522_x_at
t statistic: 8.21383898430985

(Assay) GSM507028
type: Assay
has participant: A-AFFY-2

AT2G23910
type: EnsemblDatabaseReference

HY5
type: EnsemblDatabaseReference

AtMYB45
type: EnsemblDatabaseReference

UGT74D1
type: EnsemblDatabaseReference

STR17
type: EnsemblDatabaseReference

(Assay) GSM507026
type: Assay
has participant: A-AFFY-2

PDF2.1
type: EnsemblDatabaseReference

ST
type: EnsemblDatabaseReference

AT3G57020 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 4.54770426666667
p value: 0.0182221571040691
refers to: AT3G57020
refers to: 251658_at
t statistic: 7.73414998186897

262608_at
type: EFO_0005072
part of: A-AFFY-2

MERI5B UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.11191846666667
p value: 0.0484673398605642
refers to: MERI5B
refers to: 253666_at
t statistic: 5.63168796532339

LOX1
type: EnsemblDatabaseReference

AT4G33070 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 4.88869626666667
p value: 0.0430594905019483
refers to: 253416_at
refers to: AT4G33070
t statistic: 5.96692696370199

(Sample) developmental stage/Boyes key 3.9
type: EFO_0000001
property type: developmental stage
property value: Boyes key 3.9

266141_at
type: EFO_0005072
part of: A-AFFY-2

262517_at
type: EFO_0005072
part of: A-AFFY-2

AT2G23910 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.88435503333333
p value: 0.00377487921322931
refers to: AT2G23910
refers to: 266578_at
t statistic: 15.3119593509926

HY5
type: EnsemblDatabaseReference

AtMYB45
type: EnsemblDatabaseReference

pEARLI 1 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 5.2197449
p value: 0.00417857397101097
refers to: 254805_at
refers to: pEARLI 1
t statistic: 13.0098061483987

(Factor value) GENOTYPE/cngc1-3
type: EFO_0000001
property type: GENOTYPE
property value: cngc1-3

STR17
type: EnsemblDatabaseReference

HYH
type: EnsemblDatabaseReference

(Assay) GSM507025
type: Assay
has participant: A-AFFY-2

266578_at
type: EFO_0005072
part of: A-AFFY-2

252746_at
type: EFO_0005072
part of: A-AFFY-2

PDF2.1
type: EnsemblDatabaseReference

254543_at
type: EFO_0005072
part of: A-AFFY-2

(Sample) organism part/root
type: EFO_0000989
property type: organism part
property value: root

ST
type: EnsemblDatabaseReference

AT5G22890 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.9246891
p value: 0.0453219610198931
refers to: AT5G22890
refers to: 249882_at
t statistic: 5.77449953904761

263473_at
type: EFO_0005072
part of: A-AFFY-2

ST UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.9687642
p value: 0.014151749619065
refers to: 264042_at
refers to: ST
t statistic: 8.70597290894325

AT2G18360 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.31956806666667
p value: 0.0342391743756596
refers to: 265341_at
refers to: AT2G18360
t statistic: 6.3740030604881

(Assay) GSM507023
type: Assay
has participant: A-AFFY-2

ATMSRB6 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.1445109
p value: 0.0430594905019483
refers to: ATMSRB6
refers to: 255298_at
t statistic: 5.95217361426159

AT1G51830 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.8570484
p value: 0.0247212293905535
refers to: AT1G51830
refers to: 246375_at
t statistic: 6.86722153013327

AT4G33070
type: EnsemblDatabaseReference

252340_at
type: EFO_0005072
part of: A-AFFY-2

252010_at
type: EFO_0005072
part of: A-AFFY-2

XTH32 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.25362646666667
p value: 0.0214537615406799
refers to: 263841_at
refers to: XTH32
t statistic: 7.33618586584247

HYH
type: EnsemblDatabaseReference

(Assay) GSM507024
type: Assay
has participant: A-AFFY-2

SUS4
type: EnsemblDatabaseReference

UGT74D1 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.42259876666667
p value: 0.0444376797742761
refers to: UGT74D1
refers to: 263473_at
t statistic: 5.86597133912261

264415_at
type: EFO_0005072
part of: A-AFFY-2

264042_at
type: EFO_0005072
part of: A-AFFY-2

AZI1 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 4.22533243333334
p value: 0.0091288635928983
refers to: AZI1
refers to: 254818_at
t statistic: 9.74449910608837

ATGSTU24 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.94471543333333
p value: 0.027258613255493
refers to: 262518_at
refers to: ATGSTU24
t statistic: 6.72106605289037

266097_at
type: EFO_0005072
part of: A-AFFY-2

260072_at
type: EFO_0005072
part of: A-AFFY-2

MERI5B
type: EnsemblDatabaseReference

AT4G33070
type: EnsemblDatabaseReference

(Assay) GSM507027
type: Assay
has participant: A-AFFY-2

(Sample) genotype/wild type genotype
type: EFO_0000001
property type: genotype
property value: wild type genotype

249015_at
type: EFO_0005072
part of: A-AFFY-2

266712_at
type: EFO_0005072
part of: A-AFFY-2

Analysis of 'cngc1-3' vs 'wild type'
type: MicroarrayDifferentialExpressionAnalysis

254805_at
type: EFO_0005072
part of: A-AFFY-2

AT3G57020
type: EnsemblDatabaseReference

SUS4
type: EnsemblDatabaseReference

PDF2.1 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.27280826666667
p value: 0.0418953338126116
refers to: 266141_at
refers to: PDF2.1
t statistic: 6.04104930545013

RAP2.6
type: EnsemblDatabaseReference

AT5G38020 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.251454
p value: 0.0444376797742761
refers to: 249567_at
refers to: AT5G38020
t statistic: 5.87201450065585

253416_at
type: EFO_0005072
part of: A-AFFY-2

AT1G14120 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.45817736666667
p value: 0.0334239648688091
refers to: AT1G14120
refers to: 262608_at
t statistic: 6.42875782757046

AT2G46750
type: EnsemblDatabaseReference

RAP2.6 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.1077895
p value: 0.0229694629116617
refers to: RAP2.6
refers to: 264415_at
t statistic: 7.0927841595438

SP1L5 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.46489516666667
p value: 0.014151749619065
refers to: 254240_at
refers to: SP1L5
t statistic: 8.69269114906987

MERI5B
type: EnsemblDatabaseReference

AT5G22890
type: EnsemblDatabaseReference

COR413-PM1
type: EnsemblDatabaseReference

AT3G52740
type: EnsemblDatabaseReference

251658_at
type: EFO_0005072
part of: A-AFFY-2

LOX1 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.70556173333333
p value: 0.0418953338126116
refers to: LOX1
refers to: 256321_at
t statistic: 6.02688760731149

265480_at
type: EFO_0005072
part of: A-AFFY-2

AT2G18360
type: EnsemblDatabaseReference

AT3G57020
type: EnsemblDatabaseReference

AT2G46750 UP in 'cngc1-3' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.2450036
p value: 0.0146259264268193
refers to: AT2G46750
refers to: 266712_at
t statistic: 8.5128139381155

254818_at
type: EFO_0005072
part of: A-AFFY-2

RAP2.6
type: EnsemblDatabaseReference

AT2G41380
type: EnsemblDatabaseReference

(Factor value) GENOTYPE/cngc19 knockout
type: EFO_0000001
property type: GENOTYPE
property value: cngc19 knockout

AT2G46750
type: EnsemblDatabaseReference

AT3G16530
type: EnsemblDatabaseReference

AT1G51830
type: EnsemblDatabaseReference

AT5G22890
type: EnsemblDatabaseReference

COR413-PM1
type: EnsemblDatabaseReference

AT3G14060
type: EnsemblDatabaseReference

AT2G41730
type: EnsemblDatabaseReference

266368_at
type: EFO_0005072
part of: A-AFFY-2