(Sample) organism/Gallus gallus
type: Gallus gallus
property type: organism
property value: Gallus gallus

DIEXF UP in 'CAV strain CI 34' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.09283615
p value: 0.01893153526882
refers to: DIEXF
refers to: GgaAffx.6199.1.S1_at
t statistic: 7.4018747733862

ENSGALG00000006723
type: EnsemblDatabaseReference

(Assay) 870_0058_Kaiser_838_VP335A
type: Assay
has participant: A-AFFY-103

(Assay) 872_0058_Kaiser_840_VP387A
type: Assay
has participant: A-AFFY-103

Analysis of 'CAV strain VP3 86/87/88' vs 'none'
type: MicroarrayDifferentialExpressionAnalysis

PDK4 UP in 'CAV strain VP3 35/37' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 2.63948448333333
p value: 0.0186697865263204
refers to: PDK4
refers to: Gga.16444.1.S1_at
t statistic: 7.22975630019749

(Assay) 869_0058_Kaiser_837_CUXA
type: Assay
has participant: A-AFFY-103

PROM1
type: EnsemblDatabaseReference

NSRP1 DOWN in 'CAV strain VP3 86/87/88' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.268847275
p value: 0.00676497632917776
refers to: NSRP1
refers to: GgaAffx.2588.1.S1_x_at
t statistic: -8.83992390001713

(Assay) 890_0058_Kaiser_858_CUXD
type: Assay
has participant: A-AFFY-103

(Assay) 893_0058_Kaiser_861_VP387D
type: Assay
has participant: A-AFFY-103

E-TABM-358
type: microarray 1colour mrna differential
RO_0002162: Gallus gallus
description: Two highly-passaged attenuated and three VP3 CAV mutant isolates were used in this study with the aim of elucidating the interactions of each of these proteins with the host organism.
uses data from: pubmed

(Factor value) INFECT/CAV strain CRI 18
type: EFO_0000001
property type: INFECT
property value: CAV strain CRI 18

(Assay) 887_0058_Kaiser_855_MSBD
type: Assay
has participant: A-AFFY-103

(Assay) 867_0058_Kaiser_835_CI34A
type: Assay
has participant: A-AFFY-103

Gallus gallus
type: OBI_0100026

(Factor value) INFECT/CAV strain CUX-1
type: EFO_0000001
property type: INFECT
property value: CAV strain CUX-1

(Factor value) INFECT/CAV strain VP3 86/87/88
type: EFO_0000001
property type: INFECT
property value: CAV strain VP3 86/87/88

Gga.16444.1.S1_at
type: EFO_0005072
part of: A-AFFY-103

BRT-1 DOWN in 'CAV strain VP3 86/87/88' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.056556425
p value: 0.0384475170921447
refers to: Gga.4975.5.S1_a_at
refers to: BRT-1
t statistic: -5.52581707925896

NSRP1
type: EnsemblDatabaseReference

Gga.8851.2.S1_a_at
type: EFO_0005072
part of: A-AFFY-103

NSG1 UP in 'CAV strain VP3 86/87/88' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.027311775
p value: 0.036133357361492
refers to: NSG1
refers to: Gga.2712.1.S1_at
t statistic: 6.20483625889288

Analysis of 'CAV strain VP3 35/37' vs 'none'
type: MicroarrayDifferentialExpressionAnalysis

(Assay) 877_0058_Kaiser_845_VP335B
type: Assay
has participant: A-AFFY-103

(Assay) 876_0058_Kaiser_844_CUXB
type: Assay
has participant: A-AFFY-103

(Assay) 868_0058_Kaiser_836_CRI18A
type: Assay
has participant: A-AFFY-103

(Assay) 874_0058_Kaiser_842_CI34B
type: Assay
has participant: A-AFFY-103

Gga.2965.1.S1_at
type: EFO_0005072
part of: A-AFFY-103

(Assay) 873_0058_Kaiser_841_MSBB
type: Assay
has participant: A-AFFY-103

(Assay) 888_0058_Kaiser_856_CI34D
type: Assay
has participant: A-AFFY-103

ENSGALG00000006723 DOWN in 'CAV strain VP3 86' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01774176666666
p value: 0.048598700965208
refers to: ENSGALG00000006723
refers to: Gga.8851.2.S1_a_at
t statistic: -6.5020839965194

ENSGALG00000006723
type: EnsemblDatabaseReference

GgaAffx.2588.1.S1_x_at
type: EFO_0005072
part of: A-AFFY-103

GgaAffx.6199.1.S1_at
type: EFO_0005072
part of: A-AFFY-103

NSRP1 DOWN in 'CAV strain VP3 86/87/88' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.448138625
p value: 0.00347109129522362
refers to: GgaAffx.2588.1.S1_at
refers to: NSRP1
t statistic: -9.70829221741941

(Assay) 891_0058_Kaiser_859_VP335D
type: Assay
has participant: A-AFFY-103

PDK4
type: EnsemblDatabaseReference

(Assay) 882_0058_Kaiser_850_CRI18C
type: Assay
has participant: A-AFFY-103

PROM1 UP in 'CAV strain VP3 86/87/88' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.3008962
p value: 0.0363025486242269
refers to: Gga.2042.1.S1_at
refers to: PROM1
t statistic: 6.03069148006082

PDK4
type: EnsemblDatabaseReference

GgaAffx.2588.1.S1_at
type: EFO_0005072
part of: A-AFFY-103

(Assay) 866_0058_Kaiser_834_MSBA
type: Assay
has participant: A-AFFY-103

NSG1
type: EnsemblDatabaseReference

Gga.2042.1.S1_at
type: EFO_0005072
part of: A-AFFY-103

DIEXF
type: EnsemblDatabaseReference

(Assay) 881_0058_Kaiser_849_CI34C
type: Assay
has participant: A-AFFY-103

(Assay) 875_0058_Kaiser_843_CRI18B
type: Assay
has participant: A-AFFY-103

NSRP1
type: EnsemblDatabaseReference

Gga.4975.5.S1_a_at
type: EFO_0005072
part of: A-AFFY-103

BRT-1
type: EnsemblDatabaseReference

DIEXF
type: EnsemblDatabaseReference

Analysis of 'CAV strain CI 34' vs 'none'
type: MicroarrayDifferentialExpressionAnalysis

(Factor value) INFECT/CAV strain VP3 35/37
type: EFO_0000001
property type: INFECT
property value: CAV strain VP3 35/37

(Assay) 880_0058_Kaiser_848_MSBC
type: Assay
has participant: A-AFFY-103

BRT-1
type: EnsemblDatabaseReference

TIMP2
type: EnsemblDatabaseReference

(Sample) organism part/thymus
type: UBERON_0002370
property type: organism part
property value: thymus

Analysis of 'CAV strain VP3 86' vs 'none'
type: MicroarrayDifferentialExpressionAnalysis

ABCB1LB
type: EnsemblDatabaseReference

(Assay) 889_0058_Kaiser_857_CRI18D
type: Assay
has participant: A-AFFY-103

(Sample) biosource type/frozen specimen
type: EFO_0000001
property type: biosource type
property value: frozen specimen

(Sample) biosource provider/AFBINI
type: EFO_0000001
property type: biosource provider
property value: AFBINI

Gga.4975.2.S1_a_at
type: EFO_0005072
part of: A-AFFY-103

ABCB1LB
type: EnsemblDatabaseReference

(Assay) 892_0058_Kaiser_860_VP386D
type: Assay
has participant: A-AFFY-103

PROM1 UP in 'CAV strain VP3 35/37' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.47021660833333
p value: 0.0253289974319526
refers to: PROM1
refers to: Gga.2042.1.S1_at
t statistic: 6.3986347113426

(Factor value) INFECT/CAV strain VP3 86
type: EFO_0000001
property type: INFECT
property value: CAV strain VP3 86

DIEXF UP in 'CAV strain VP3 86/87/88' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.35077415
p value: 0.00113946796643564
refers to: GgaAffx.6199.1.S1_at
refers to: DIEXF
t statistic: 11.2230239298595

PROM1
type: EnsemblDatabaseReference

NSG1
type: EnsemblDatabaseReference

(Factor value) INFECT/none
type: EFO_0001461
property type: INFECT
property value: none

Gga.4109.1.S1_at
type: EFO_0005072
part of: A-AFFY-103

(Assay) 885_0058_Kaiser_853_VP386C
type: Assay
has participant: A-AFFY-103

TIMP2 DOWN in 'CAV strain VP3 86/87/88' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.25404385
p value: 2.24768906374683E-4
refers to: TIMP2
refers to: Gga.2965.1.S1_at
t statistic: -14.1701406252125

(Assay) 879_0058_Kaiser_847_VP387B
type: Assay
has participant: A-AFFY-103

(Assay) 884_0058_Kaiser_852_VP335C
type: Assay
has participant: A-AFFY-103

(Assay) 883_0058_Kaiser_851_CUXC
type: Assay
has participant: A-AFFY-103

Gga.2712.1.S1_at
type: EFO_0005072
part of: A-AFFY-103

(Assay) 878_0058_Kaiser_846_VP386B
type: Assay
has participant: A-AFFY-103

TIMP2
type: EnsemblDatabaseReference

ABCB1LB DOWN in 'CAV strain VP3 86' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14611980833333
p value: 0.0443979868392743
refers to: ABCB1LB
refers to: Gga.4109.1.S1_at
t statistic: -6.97469512204797

A-AFFY-103
type: EFO_0000269

BRT-1 DOWN in 'CAV strain VP3 86/87/88' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.062520125
p value: 0.036133357361492
refers to: BRT-1
refers to: Gga.4975.2.S1_a_at
t statistic: -6.1737902727967

(Assay) 871_0058_Kaiser_839_VP386A
type: Assay
has participant: A-AFFY-103

(Factor value) INFECT/CAV strain CI 34
type: EFO_0000001
property type: INFECT
property value: CAV strain CI 34

(Assay) 886_0058_Kaiser_854_VP387C
type: Assay
has participant: A-AFFY-103