(Sample) organism part/leaf
type: EFO_0000993
property type: organism part
property value: leaf

ATBZIP61 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.26718186666667
p value: 0.0468285010929329
refers to: ATBZIP61
refers to: 251575_at
t statistic: 5.79984085201121

UBC17
type: EnsemblDatabaseReference

AT1G67330
type: EnsemblDatabaseReference

AT1G78110 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0445918
p value: 0.0439011721286542
refers to: AT1G78110
refers to: 257502_at
t statistic: 6.54383230949628

AT4G23680
type: EnsemblDatabaseReference

264998_at
type: EFO_0005072
part of: A-AFFY-2

Arabidopsis thaliana
type: OBI_0100026

AT5G28040 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.99944166666667
p value: 0.0468285010929329
refers to: AT5G28040
refers to: 246728_at
t statistic: 5.71220878531337

AT1G78110
type: EnsemblDatabaseReference

BAT5
type: EnsemblDatabaseReference

AT-HSFC1
type: EnsemblDatabaseReference

ATPF UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.3351828
p value: 0.0468235420663789
refers to: ATPF
refers to: 245025_at
t statistic: 6.19675618181941

ATPF
type: EnsemblDatabaseReference

ATATP-PRT2
type: EnsemblDatabaseReference

GRXS4
type: EnsemblDatabaseReference

HSP15.4 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.4770375
p value: 0.0398013170924494
refers to: HSP15.4
refers to: 254384_at
t statistic: -7.30613166492998

264635_at
type: EFO_0005072
part of: A-AFFY-2

AT5G38780
type: EnsemblDatabaseReference

245010_at
type: EFO_0005072
part of: A-AFFY-2

245017_at
type: EFO_0005072
part of: A-AFFY-2

RPOC2 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.34088946666667
p value: 0.0468285010929329
refers to: RPOC2
refers to: 244997_at
t statistic: 5.86044084250708

AT1G78110
type: EnsemblDatabaseReference

PSAI UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.784821
p value: 0.0398013170924494
refers to: 245017_at
refers to: PSAI
t statistic: 7.20587894477866

ATATP-PRT2 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.35822
p value: 0.0421397011475037
refers to: ATATP-PRT2
refers to: 264673_at
t statistic: 6.75395647512799

ATPF
type: EnsemblDatabaseReference

ABI1 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.34846
p value: 0.0398013170924494
refers to: ABI1
refers to: 253994_at
t statistic: 7.80006358557039

ATATP-PRT2
type: EnsemblDatabaseReference

AT1G65500 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.39681263333333
p value: 0.0468285010929329
refers to: 264635_at
refers to: AT1G65500
t statistic: -5.76361833183902

252482_at
type: EFO_0005072
part of: A-AFFY-2

GRXS4
type: EnsemblDatabaseReference

249532_at
type: EFO_0005072
part of: A-AFFY-2

UGT76E11
type: EnsemblDatabaseReference

AT5G38780
type: EnsemblDatabaseReference

254410_at
type: EFO_0005072
part of: A-AFFY-2

AT1G65500
type: EnsemblDatabaseReference

(Assay) Hybridization_MH0104
type: Assay
has participant: A-AFFY-2

CYP71B36
type: EnsemblDatabaseReference

266693_at
type: EFO_0005072
part of: A-AFFY-2

246728_at
type: EFO_0005072
part of: A-AFFY-2

BT5 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09083933333334
p value: 0.0398013170924494
refers to: BT5
refers to: 253061_at
t statistic: -9.2910143971421

UGT76E11
type: EnsemblDatabaseReference

NDHJ UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.086096
p value: 0.0450999445902075
refers to: 245010_at
refers to: NDHJ
t statistic: 6.42174026207816

RPOC2
type: EnsemblDatabaseReference

263595_at
type: EFO_0005072
part of: A-AFFY-2

(Sample) ecotype/Col-0
type: EFO_0005148
property type: ecotype
property value: Col-0

AT1G65500
type: EnsemblDatabaseReference

UBC17 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0858661
p value: 0.048154773560382
refers to: UBC17
refers to: 246195_at
t statistic: -5.38661608680447

(Sample) organism/Arabidopsis thaliana
type: Arabidopsis thaliana
property type: organism
property value: Arabidopsis thaliana

NDHJ
type: EnsemblDatabaseReference

CYP71B36
type: EnsemblDatabaseReference

E-MEXP-2240
type: microarray 1colour mrna differential
RO_0002162: Arabidopsis thaliana
description: Comparing the gene expression patterns between wild type plant (Col_0) and BASS knock-out plants.
uses data from: http://identifiers.org/pubmed/19633020

GRXS4 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.02312923333333
p value: 0.0398013170924494
refers to: GRXS4
refers to: 245392_at
t statistic: -8.29003420985185

ATH8
type: EnsemblDatabaseReference

264697_at
type: EFO_0005072
part of: A-AFFY-2

(Sample) genotype/BASS knock out
type: EFO_0000001
property type: genotype
property value: BASS knock out

MT1C
type: EnsemblDatabaseReference

253061_at
type: EFO_0005072
part of: A-AFFY-2

CKX5
type: EnsemblDatabaseReference

RPOC2
type: EnsemblDatabaseReference

ATGRP2
type: EnsemblDatabaseReference

GLB1 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.12300633333333
p value: 0.0468235420663789
refers to: GLB1
refers to: 263096_at
t statistic: -6.1791363775355

HSP15.4
type: EnsemblDatabaseReference

AT-HSFC1 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.76261306666667
p value: 0.041667980044112
refers to: AT-HSFC1
refers to: 258139_at
t statistic: 6.81493721407884

NDHJ
type: EnsemblDatabaseReference

AT5G53480 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.72859323333333
p value: 0.0398013170924494
refers to: 248268_at
refers to: AT5G53480
t statistic: 9.89970000432366

261109_at
type: EFO_0005072
part of: A-AFFY-2

263096_at
type: EFO_0005072
part of: A-AFFY-2

(Factor value) GENOTYPE/BASS knock out
type: EFO_0000001
property type: GENOTYPE
property value: BASS knock out

ATH8
type: EnsemblDatabaseReference

(Assay) Hybridization_MH0101
type: Assay
has participant: A-AFFY-2

(Factor value) GENOTYPE/wild type genotype
type: EFO_0000001
property type: GENOTYPE
property value: wild type genotype

254684_at
type: EFO_0005072
part of: A-AFFY-2

MT1C
type: EnsemblDatabaseReference

CKX5
type: EnsemblDatabaseReference

A-AFFY-2
type: EFO_0000269

CRK29
type: EnsemblDatabaseReference

ATGRP2
type: EnsemblDatabaseReference

HSP15.4
type: EnsemblDatabaseReference

ATBZIP61
type: EnsemblDatabaseReference

UGT76E11 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.57668536666667
p value: 0.0474393070093391
refers to: UGT76E11
refers to: 252482_at
t statistic: 5.62195057749622

CYP71B36 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3104877
p value: 0.0474393070093391
refers to: 256874_at
refers to: CYP71B36
t statistic: -5.47881057020337

261175_at
type: EFO_0005072
part of: A-AFFY-2

BAT5 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -3.54563176666666
p value: 0.00141310879286597
refers to: BAT5
refers to: 254862_at
t statistic: -22.3919763615786

257502_at
type: EFO_0005072
part of: A-AFFY-2

GLB1
type: EnsemblDatabaseReference

AT-HSFC1
type: EnsemblDatabaseReference

AT3G15720
type: EnsemblDatabaseReference

245025_at
type: EFO_0005072
part of: A-AFFY-2

PSAI
type: EnsemblDatabaseReference

258252_at
type: EFO_0005072
part of: A-AFFY-2

CRK29 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.41299826666667
p value: 0.0398013170924494
refers to: CRK29
refers to: 254410_at
t statistic: -7.65339259518094

CRK29
type: EnsemblDatabaseReference

EPSIN2
type: EnsemblDatabaseReference

ATH8 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.6267107
p value: 0.0398013170924494
refers to: ATH8
refers to: 260408_at
t statistic: -7.25497328682212

MIOX2 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.39682826666667
p value: 0.0468235420663789
refers to: MIOX2
refers to: 266693_at
t statistic: -6.04828141002491

AT5G28040
type: EnsemblDatabaseReference

(Assay) Hybridization_MH0100
type: Assay
has participant: A-AFFY-2

ATBZIP61
type: EnsemblDatabaseReference

BT5
type: EnsemblDatabaseReference

EPSIN2 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.60068443333333
p value: 0.0398013170924494
refers to: EPSIN2
refers to: 266436_at
t statistic: 7.6590900378195

260408_at
type: EFO_0005072
part of: A-AFFY-2

254234_at
type: EFO_0005072
part of: A-AFFY-2

GLB1
type: EnsemblDatabaseReference

AT5G53480
type: EnsemblDatabaseReference

AT3G15720
type: EnsemblDatabaseReference

PSAI
type: EnsemblDatabaseReference

AT1G04800
type: EnsemblDatabaseReference

EPSIN2
type: EnsemblDatabaseReference

AT5G28040
type: EnsemblDatabaseReference

BT5
type: EnsemblDatabaseReference

(Sample) initial time point/germination
type: EFO_0000001
property type: initial time point
property value: germination

AT1G04800 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.37974456666667
p value: 0.0473412356429201
refers to: AT1G04800
refers to: 261175_at
t statistic: 5.67287404201764

245392_at
type: EFO_0005072
part of: A-AFFY-2

AT5G24710
type: EnsemblDatabaseReference

AT5G53480
type: EnsemblDatabaseReference

PAP8
type: EnsemblDatabaseReference

AT4G23680 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.20441916666667
p value: 0.0468235420663789
refers to: AT4G23680
refers to: 254234_at
t statistic: -6.05397905671771

266436_at
type: EFO_0005072
part of: A-AFFY-2

CKX5 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17467063333333
p value: 0.0398013170924494
refers to: CKX5
refers to: 261109_at
t statistic: 11.185133528476

251575_at
type: EFO_0005072
part of: A-AFFY-2

AtRLP12
type: EnsemblDatabaseReference

AT1G04800
type: EnsemblDatabaseReference

ATGRP2 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.13465416666666
p value: 0.047676783380875
refers to: ATGRP2
refers to: 254684_at
t statistic: 5.45897211127621

(Sample) age/3
type: EFO_0000001
property type: age
property value: 3

244997_at
type: EFO_0005072
part of: A-AFFY-2

256874_at
type: EFO_0005072
part of: A-AFFY-2

ABI1
type: EnsemblDatabaseReference

AT5G24710
type: EnsemblDatabaseReference

(Assay) Hybridization_MH0102
type: Assay
has participant: A-AFFY-2

PAP8
type: EnsemblDatabaseReference

258139_at
type: EFO_0005072
part of: A-AFFY-2

MT1C DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.41944066666667
p value: 0.0473787380786555
refers to: MT1C
refers to: 261410_at
t statistic: -5.64799379306809

248268_at
type: EFO_0005072
part of: A-AFFY-2

261410_at
type: EFO_0005072
part of: A-AFFY-2

MIOX2
type: EnsemblDatabaseReference

AtRLP12
type: EnsemblDatabaseReference

254862_at
type: EFO_0005072
part of: A-AFFY-2

AtRLP12 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04841413333333
p value: 0.0468285010929329
refers to: 259952_at
refers to: AtRLP12
t statistic: -5.75257842173518

(Sample) genotype/wild type genotype
type: EFO_0000001
property type: genotype
property value: wild type genotype

ABI1
type: EnsemblDatabaseReference

CYCD1;1
type: EnsemblDatabaseReference

Analysis of 'BASS knock out' vs 'wild type'
type: MicroarrayDifferentialExpressionAnalysis

259952_at
type: EFO_0005072
part of: A-AFFY-2

253994_at
type: EFO_0005072
part of: A-AFFY-2

246195_at
type: EFO_0005072
part of: A-AFFY-2

246961_at
type: EFO_0005072
part of: A-AFFY-2

AT3G15720 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07486386666667
p value: 0.0478895746878569
refers to: AT3G15720
refers to: 258252_at
t statistic: -5.4367217922164

AT1G67330 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05581556666667
p value: 0.0474393070093391
refers to: AT1G67330
refers to: 264998_at
t statistic: -5.6098863891627

(Assay) Hybridization_MH0103
type: Assay
has participant: A-AFFY-2

(Assay) Hybridization_MH0099
type: Assay
has participant: A-AFFY-2

UBC17
type: EnsemblDatabaseReference

MIOX2
type: EnsemblDatabaseReference

AT1G67330
type: EnsemblDatabaseReference

AT5G38780 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2303057
p value: 0.0398013170924494
refers to: AT5G38780
refers to: 249532_at
t statistic: -8.46897040320387

254384_at
type: EFO_0005072
part of: A-AFFY-2

264673_at
type: EFO_0005072
part of: A-AFFY-2

PAP8 DOWN in 'BASS knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2612482
p value: 0.0398013170924494
refers to: PAP8
refers to: 263595_at
t statistic: -8.35962003850578

AT4G23680
type: EnsemblDatabaseReference

CYCD1;1
type: EnsemblDatabaseReference

CYCD1;1 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.03085943333333
p value: 0.0468285010929329
refers to: CYCD1;1
refers to: 264697_at
t statistic: 5.90020305948989

AT5G24710 UP in 'BASS knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.15521606666667
p value: 0.0468235420663789
refers to: AT5G24710
refers to: 246961_at
t statistic: 6.04064649641236

BAT5
type: EnsemblDatabaseReference