LEA18
type: EnsemblDatabaseReference

GH3.3
type: EnsemblDatabaseReference

264157_at
type: EFO_0005072
part of: A-AFFY-2

255177_at
type: EFO_0005072
part of: A-AFFY-2

AT5G62280 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -2.48588876227244
p value: 1.73191244241377E-5
refers to: AT5G62280
refers to: 247474_at
t statistic: -20.6314605057059

AT3G42800
type: EnsemblDatabaseReference

ACD6 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 3.51984021353271
p value: 8.80215005616736E-5
refers to: 245265_at
refers to: ACD6
t statistic: 14.7923041515011

LEA18 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08621148621377
p value: 0.00415749239938551
refers to: LEA18
refers to: 266544_at
t statistic: -6.49061556982894

COR15A DOWN in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.72083487654883
p value: 0.0441262996352313
refers to: COR15A
refers to: 263497_at
t statistic: -3.79990288648211

262128_at
type: EFO_0005072
part of: A-AFFY-2

BHLH039
type: EnsemblDatabaseReference

247474_at
type: EFO_0005072
part of: A-AFFY-2

ATCKX6 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.78974303457488
p value: 2.29767859717923E-4
refers to: ATCKX6
refers to: 251178_at
t statistic: -11.8081471964564

AT5G02760
type: EnsemblDatabaseReference

(Assay) sav3-2-SH-rep3
type: Assay
has participant: A-AFFY-2

ECS1 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0249120032481
p value: 0.00137484915256818
refers to: 256497_at
refers to: ECS1
t statistic: 8.58241375452126

LUP1 DOWN in 'sav3-2' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.28643738737355
p value: 0.00939735844909042
refers to: LUP1
refers to: 264100_at
t statistic: -5.66768338698011

SAUR68
type: EnsemblDatabaseReference

AT4G27280 UP in 'sav1-1' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.45996759415361
p value: 0.00244711147513447
refers to: AT4G27280
refers to: 253915_at
t statistic: 10.3290862302064

AT4G14100
type: EnsemblDatabaseReference

AT1G12080 DOWN in 'sav1-1' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01563767061772
p value: 0.0155480661806779
refers to: 264342_at
refers to: AT1G12080
t statistic: -5.75631424165439

AT2G46640
type: EnsemblDatabaseReference

255516_at
type: EFO_0005072
part of: A-AFFY-2

CDF5 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21113249819743
p value: 0.0276119132330769
refers to: 259834_at
refers to: CDF5
t statistic: -4.26872798562182

254232_at
type: EFO_0005072
part of: A-AFFY-2

IAA29
type: EnsemblDatabaseReference

GA5 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.83581762707539
p value: 0.0135784769307971
refers to: GA5
refers to: 254065_at
t statistic: -5.09412338038146

AT1G29500
type: EnsemblDatabaseReference

AT3G50340
type: EnsemblDatabaseReference

259332_at
type: EFO_0005072
part of: A-AFFY-2

IAA29 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.73291969918662
p value: 0.00408465264330091
refers to: IAA29
refers to: 253423_at
t statistic: -6.52827056668297

IAA19
type: EnsemblDatabaseReference

ACD6
type: EnsemblDatabaseReference

RHS13 UP in 'sav1-1' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00265737974933
p value: 0.0499241651685359
refers to: 255516_at
refers to: RHS13
t statistic: 3.93911022867846

GA5
type: EnsemblDatabaseReference

RHS13
type: EnsemblDatabaseReference

245326_at
type: EFO_0005072
part of: A-AFFY-2

AT1G78450
type: EnsemblDatabaseReference

251017_at
type: EFO_0005072
part of: A-AFFY-2

BHLH32
type: EnsemblDatabaseReference

AT5G03350 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.77728234422745
p value: 0.00800255042262511
refers to: 250942_at
refers to: AT5G03350
t statistic: 5.90064739202893

GH3.3 UP in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.13984248740598
p value: 0.00231556402272777
refers to: 245076_at
refers to: GH3.3
t statistic: 9.36148518212206

CYP85A2
type: EnsemblDatabaseReference

IAA6 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -3.34858556278699
p value: 4.36479498700607E-5
refers to: 260152_at
refers to: IAA6
t statistic: -16.8571060223827

IAA2 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18849105556735
p value: 0.00288745757997806
refers to: IAA2
refers to: 257766_at
t statistic: -7.10984679733626

SAUR68 DOWN in 'sav3-2' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01267517565979
p value: 0.0177895598902573
refers to: SAUR68
refers to: 259783_at
t statistic: -4.7961941705328

SAUR_AC1
type: EnsemblDatabaseReference

AT5G62280
type: EnsemblDatabaseReference

245265_at
type: EFO_0005072
part of: A-AFFY-2

IAA6
type: EnsemblDatabaseReference

IAA5 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -2.74121554012883
p value: 2.65462127009466E-5
refers to: IAA5
refers to: 261766_at
t statistic: -18.7457282933425

AT1G32560 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14103637410178
p value: 0.00134988077527245
refers to: AT1G32560
refers to: 256464_at
t statistic: -8.09443141635633

CML10
type: EnsemblDatabaseReference

AT1G26390 UP in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.24357687506259
p value: 0.0291541520342067
refers to: AT1G26390
refers to: 261020_at
t statistic: 4.28186436310176

AT4G23680 DOWN in 'sav1-1' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.17231272689257
p value: 0.0126988121396678
refers to: AT4G23680
refers to: 254234_at
t statistic: -6.2672627100586

259560_at
type: EFO_0005072
part of: A-AFFY-2

AT3G48970
type: EnsemblDatabaseReference

AT5G24210 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.46389040366321
p value: 0.0192663674410973
refers to: 249777_at
refers to: AT5G24210
t statistic: 4.6988735135774

AT1G29440
type: EnsemblDatabaseReference

WRKY70
type: EnsemblDatabaseReference

AT3G18200
type: EnsemblDatabaseReference

LURP1 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 2.71676868707449
p value: 1.15340081728621E-6
refers to: LURP1
refers to: 265837_at
t statistic: 30.4197619646189

LURP1
type: EnsemblDatabaseReference

DIC2
type: EnsemblDatabaseReference

250942_at
type: EFO_0005072
part of: A-AFFY-2

PUB25
type: EnsemblDatabaseReference

BAS1
type: EnsemblDatabaseReference

ARGOS
type: EnsemblDatabaseReference

QQS UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 3.28750055490422
p value: 7.97540170465744E-5
refers to: QQS
refers to: 256940_at
t statistic: 15.225800766216

WAK1
type: EnsemblDatabaseReference

252765_at
type: EFO_0005072
part of: A-AFFY-2

260716_at
type: EFO_0005072
part of: A-AFFY-2

AT1G32560 DOWN in 'sav3-2' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.29818676107057
p value: 0.00207444131288021
refers to: AT1G32560
refers to: 256464_at
t statistic: -7.74719257014298

245250_at
type: EFO_0005072
part of: A-AFFY-2

AT5G24210
type: EnsemblDatabaseReference

265672_at
type: EFO_0005072
part of: A-AFFY-2

AT1G26390
type: EnsemblDatabaseReference

ATERF6
type: EnsemblDatabaseReference

WAK2
type: EnsemblDatabaseReference

267565_at
type: EFO_0005072
part of: A-AFFY-2

COR15A
type: EnsemblDatabaseReference

AT2G37030
type: EnsemblDatabaseReference

AT4G29270
type: EnsemblDatabaseReference

AT3G05170
type: EnsemblDatabaseReference

AT1G35710
type: EnsemblDatabaseReference

GH3.5
type: EnsemblDatabaseReference

258021_at
type: EFO_0005072
part of: A-AFFY-2

ACS4
type: EnsemblDatabaseReference

CML10 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.87475194809005
p value: 0.00600641999925356
refers to: CML10
refers to: 267076_at
t statistic: 6.37162579267012

AT1G12080
type: EnsemblDatabaseReference

SIB1
type: EnsemblDatabaseReference

LURP1 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.28979048629139
p value: 0.00285181491690283
refers to: LURP1
refers to: 265837_at
t statistic: 7.13225062618997

AT2G18010
type: EnsemblDatabaseReference

ICL
type: EnsemblDatabaseReference

AT2G23200
type: EnsemblDatabaseReference

AT3G50340 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.73651457336966
p value: 1.42604878364492E-4
refers to: AT3G50340
refers to: 252204_at
t statistic: -13.4688368831801

AT4G27280
type: EnsemblDatabaseReference

ATXTH17
type: EnsemblDatabaseReference

AT1G32560
type: EnsemblDatabaseReference

LEA18 DOWN in 'sav3-2' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.22915873501702
p value: 0.00155205043736017
refers to: 266544_at
refers to: LEA18
t statistic: -8.14458904432965

264100_at
type: EFO_0005072
part of: A-AFFY-2

AT1G32560 DOWN in 'sav1-1' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.22136500464672
p value: 0.0126139430306677
refers to: AT1G32560
refers to: 256464_at
t statistic: -6.37554635175645

CYP85A2 UP in 'sav1-1' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00816500370815
p value: 0.00244711147513447
refers to: CYP85A2
refers to: 256598_at
t statistic: 10.4358899429013

IAA5
type: EnsemblDatabaseReference

LECRK44 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.12609704460291
p value: 0.00150408545328371
refers to: 255503_at
refers to: LECRK44
t statistic: 8.43168282050664

QQS UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 3.38251942463557
p value: 4.44801364125056E-5
refers to: QQS
refers to: 256940_at
t statistic: 16.8954726407402

CYP71A12 UP in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.28396226216438
p value: 0.0212049771452504
refers to: CYP71A12
refers to: 267565_at
t statistic: 4.7492431383698

259331_at
type: EFO_0005072
part of: A-AFFY-2

CORI3
type: EnsemblDatabaseReference

AT1G73805 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17342569457893
p value: 0.00351217399477705
refers to: AT1G73805
refers to: 260046_at
t statistic: 6.7496908259584

AT4G23680
type: EnsemblDatabaseReference

ACD6 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 3.30298653951554
p value: 2.63423039561884E-4
refers to: ACD6
refers to: 245265_at
t statistic: 11.4716134952582

258145_at
type: EFO_0005072
part of: A-AFFY-2

AT1G52690
type: EnsemblDatabaseReference

QQS
type: EnsemblDatabaseReference

AT3G18200 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01193046460069
p value: 0.00342787769580016
refers to: AT3G18200
refers to: 258145_at
t statistic: -6.78867401992027

PUB25 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0635230382642
p value: 0.00270397237608426
refers to: PUB25
refers to: 258021_at
t statistic: -7.24549854369088

YUC9
type: EnsemblDatabaseReference

BHLH039 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.41623828678473
p value: 0.0095088014040917
refers to: 251677_at
refers to: BHLH039
t statistic: 5.50466757506407

(Assay) sav1-1-Wc-rep3
type: Assay
has participant: A-AFFY-2

RGF6 DOWN in 'sav3-2' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.20900564535614
p value: 5.62836322770473E-4
refers to: RGF6
refers to: 245336_at
t statistic: -10.1376906863632

AT1G12080 DOWN in 'sav3-2' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0292904908803
p value: 5.41914053497849E-4
refers to: AT1G12080
refers to: 264342_at
t statistic: -10.4220208777341

LUP1
type: EnsemblDatabaseReference

(Factor value) GROWTH_CONDITION/simulated shade for 1 hour
type: EFO_0000001
property type: GROWTH_CONDITION
property value: simulated shade for 1 hour

AT3G49960
type: EnsemblDatabaseReference

BHLH32 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00729773109684
p value: 0.00241627461785624
refers to: 257642_at
refers to: BHLH32
t statistic: -7.39394625973329

ATXTH17 DOWN in 'sav1-1' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00259586706813
p value: 0.00178525085725458
refers to: ATXTH17
refers to: 264157_at
t statistic: -12.1569658237834

260046_at
type: EFO_0005072
part of: A-AFFY-2

LEA18
type: EnsemblDatabaseReference

(Assay) Col-0-SH-rep2
type: Assay
has participant: A-AFFY-2

AT3G03840
type: EnsemblDatabaseReference

GH3.3
type: EnsemblDatabaseReference

AT1G31690 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17209940526512
p value: 5.7427464169294E-4
refers to: AT1G31690
refers to: 246603_at
t statistic: 9.8866209546291

(Assay) Col-0-Wc-rep3
type: Assay
has participant: A-AFFY-2

(Assay) sav1-1-SH-rep2
type: Assay
has participant: A-AFFY-2

ACS4 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.82290003864972
p value: 4.94503042052556E-4
refers to: ACS4
refers to: 266830_at
t statistic: -10.2258791252149

CYP81F2
type: EnsemblDatabaseReference

AT3G42800
type: EnsemblDatabaseReference

AT1G47400
type: EnsemblDatabaseReference

252970_at
type: EFO_0005072
part of: A-AFFY-2

IAA1
type: EnsemblDatabaseReference

AT1G52690 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.43788293960101
p value: 7.66445402788492E-4
refers to: AT1G52690
refers to: 262128_at
t statistic: -9.15506082178723

261339_at
type: EFO_0005072
part of: A-AFFY-2

AT1G29460 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3853609087622
p value: 7.71183356649238E-4
refers to: 259787_at
refers to: AT1G29460
t statistic: -9.07364383721621

BHLH039
type: EnsemblDatabaseReference

ECS1 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0819323252056
p value: 0.00119903871196436
refers to: ECS1
refers to: 256497_at
t statistic: 8.2804591019961

ADS1
type: EnsemblDatabaseReference

265806_at
type: EFO_0005072
part of: A-AFFY-2

246603_at
type: EFO_0005072
part of: A-AFFY-2

E-GEOD-9816
type: microarray 1colour mrna differential
RO_0002162: Arabidopsis thaliana
description: Plants grown at high densities perceive a decrease in the red to far-red (R:FR) ratio of incoming light, resulting from absorption of red light by canopy leaves and reflection of far-red light from neighboring plants. These changes in light quality trigger a series of responses known collectively as the shade avoidance syndrome. During shade avoidance, stems elongate at the expense of leaf and storage organ expansion, there is reduced branching, and flowering is accelerated. We identified several loci in Arabidopsis, mutations in which lead to plants defective in multiple shade avoidance outputs. Here we describe SAV3, an aminotransferase, and show that SAV3 catalyzes the formation of indole-3-pyruvic acid (IPA) from L-tryptophan (L-Trp), the first step in a previously proposed, but uncharacterized, auxin biosynthetic pathway. This pathway can be rapidly deployed to biosynthesize auxin at the high levels required to initiate the multiple changes in body plan associated with shade avoidance. Experiment Overall Design: Wild type Col-0, sav3-2 and sav1-1 seedlings were used here. They were treated with or without 1hr of low R:FR light (R:FR ratio=0.7). Three independent biological replicates were used.
uses data from: http://identifiers.org/pubmed/18394996

(Assay) sav3-2-Wc-rep3
type: Assay
has participant: A-AFFY-2

AT4G14100
type: EnsemblDatabaseReference

AT2G46640
type: EnsemblDatabaseReference

253908_at
type: EFO_0005072
part of: A-AFFY-2

ICL DOWN in 'sav3-2' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.17093335783285
p value: 0.0062444744585043
refers to: ICL
refers to: 257947_at
t statistic: -6.29983944600786

AT5G41400
type: EnsemblDatabaseReference

AT1G29500
type: EnsemblDatabaseReference

WRKY54
type: EnsemblDatabaseReference

257382_at
type: EFO_0005072
part of: A-AFFY-2

IAA19
type: EnsemblDatabaseReference

LUP1 DOWN in 'sav1-1' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.40283660256978
p value: 0.0126139430306677
refers to: LUP1
refers to: 264100_at
t statistic: -6.34616007585763

245397_at
type: EFO_0005072
part of: A-AFFY-2

AT3G05170 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0952686267714
p value: 5.41914053497849E-4
refers to: 259352_at
refers to: AT3G05170
t statistic: 10.6273529183961

BHLH32
type: EnsemblDatabaseReference

AT2G23200 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.10954508395867
p value: 0.00102399512670953
refers to: 245074_at
refers to: AT2G23200
t statistic: 9.01486996914215

(Assay) sav1-1-SH-rep1
type: Assay
has participant: A-AFFY-2

ATPER1
type: EnsemblDatabaseReference

PSBB DOWN in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00358664422906
p value: 0.0179772709910468
refers to: PSBB
refers to: 244972_at
t statistic: -4.99788846654292

AT5G03350 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.65962734175873
p value: 0.0156501730846856
refers to: AT5G03350
refers to: 250942_at
t statistic: 4.93993754604352

BAS1 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.60209599180093
p value: 5.99208290554088E-4
refers to: BAS1
refers to: 267614_at
t statistic: -9.75787563763864

261020_at
type: EFO_0005072
part of: A-AFFY-2

Analysis of 'sav1-1' vs 'wild type' in 'continuous white light'
type: MicroarrayDifferentialExpressionAnalysis

(Assay) sav3-2-SH-rep2
type: Assay
has participant: A-AFFY-2

AT3G03830 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.83694144137029
p value: 1.42604878364492E-4
refers to: AT3G03830
refers to: 259332_at
t statistic: -13.5497165989165

245076_at
type: EFO_0005072
part of: A-AFFY-2

AT4G29270 DOWN in 'sav1-1' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05786138790787
p value: 0.00799611566516277
refers to: 253720_at
refers to: AT4G29270
t statistic: -7.64953771774334

(Assay) sav3-2-Wc-rep1
type: Assay
has participant: A-AFFY-2

AT2G25510 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.8680346093528
p value: 0.00125947749222672
refers to: AT2G25510
refers to: 265611_at
t statistic: 8.18117194502897

STZ UP in 'sav1-1' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.21918883793557
p value: 0.0168881177753468
refers to: STZ
refers to: 261648_at
t statistic: 5.66344003205833

264342_at
type: EFO_0005072
part of: A-AFFY-2

IAA6
type: EnsemblDatabaseReference

259783_at
type: EFO_0005072
part of: A-AFFY-2

ECS1
type: EnsemblDatabaseReference

AT2G32560 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.25478482621124
p value: 0.00193784648942568
refers to: AT2G32560
refers to: 267116_at
t statistic: -7.67362471240117

AT3G48970
type: EnsemblDatabaseReference

IAA19 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -2.40869877633973
p value: 1.9739289660491E-4
refers to: IAA19
refers to: 258399_at
t statistic: -12.287268408386

PSBB
type: EnsemblDatabaseReference

AT3G48970 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00581823877018
p value: 1.45579966230442E-4
refers to: AT3G48970
refers to: 252296_at
t statistic: -12.8433279272587

WRKY70 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.53092606625798
p value: 0.00155205043736017
refers to: 251705_at
refers to: WRKY70
t statistic: 8.24815216942541

AT1G29440
type: EnsemblDatabaseReference

AT3G18200
type: EnsemblDatabaseReference

254065_at
type: EFO_0005072
part of: A-AFFY-2

ATPER1 DOWN in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03456543703073
p value: 0.00489718572119509
refers to: ATPER1
refers to: 260716_at
t statistic: -7.56860645176188

AT2G23200 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00667463191805
p value: 0.00215632676764596
refers to: AT2G23200
refers to: 245074_at
t statistic: 7.5160726898819

AT5G18060
type: EnsemblDatabaseReference

GH3.3 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.90842801674704
p value: 1.43185761174409E-4
refers to: 245076_at
refers to: GH3.3
t statistic: -13.1213418653467

261684_at
type: EFO_0005072
part of: A-AFFY-2

BAS1
type: EnsemblDatabaseReference

ARGOS
type: EnsemblDatabaseReference

AT1G29460
type: EnsemblDatabaseReference

267116_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) sav1-1-Wc-rep2
type: Assay
has participant: A-AFFY-2

265837_at
type: EFO_0005072
part of: A-AFFY-2

AtCYS2
type: EnsemblDatabaseReference

AT3G28420
type: EnsemblDatabaseReference

Arabidopsis thaliana
type: OBI_0100026

252238_at
type: EFO_0005072
part of: A-AFFY-2

251436_at
type: EFO_0005072
part of: A-AFFY-2

(Sample) age/7
type: EFO_0000001
property type: age
property value: 7

266830_at
type: EFO_0005072
part of: A-AFFY-2

AT1G19960
type: EnsemblDatabaseReference

RFK1 UP in 'sav1-1' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.15685235333794
p value: 0.0155480661806779
refers to: RFK1
refers to: 246633_at
t statistic: 5.75517282163876

252296_at
type: EFO_0005072
part of: A-AFFY-2

LUP1 DOWN in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.11178074321932
p value: 0.00943236766266351
refers to: 264100_at
refers to: LUP1
t statistic: -6.00551036631641

WAK1 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.38608881559978
p value: 1.48348571275066E-5
refers to: WAK1
refers to: 259561_at
t statistic: 22.739347936543

ATERF6
type: EnsemblDatabaseReference

254120_at
type: EFO_0005072
part of: A-AFFY-2

WAK2
type: EnsemblDatabaseReference

AT3G03840 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.94080178987634
p value: 6.63408807820769E-4
refers to: AT3G03840
refers to: 259331_at
t statistic: -9.55351043846058

AT2G25510
type: EnsemblDatabaseReference

IAA2
type: EnsemblDatabaseReference

COR15A
type: EnsemblDatabaseReference

AT1G52690 DOWN in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.82558586352246
p value: 0.00101661601802745
refers to: AT1G52690
refers to: 262128_at
t statistic: -12.2390668563939

253915_at
type: EFO_0005072
part of: A-AFFY-2

(Sample) genotype/wild type genotype
type: EFO_0000001
property type: genotype
property value: wild type genotype

SAUR_AC1 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.37636285586234
p value: 4.94503042052556E-4
refers to: SAUR_AC1
refers to: 252970_at
t statistic: -10.2106909113081

AT5G18060 DOWN in 'sav3-2' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14573910160999
p value: 0.0270539413184609
refers to: AT5G18060
refers to: 250012_x_at
t statistic: -4.3174085238438

AT4G29270
type: EnsemblDatabaseReference

CYP71A12
type: EnsemblDatabaseReference

263133_at
type: EFO_0005072
part of: A-AFFY-2

AT1G35710
type: EnsemblDatabaseReference

257900_at
type: EFO_0005072
part of: A-AFFY-2

ACS4
type: EnsemblDatabaseReference

AT2G18010 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.29235954244781
p value: 9.60263862431578E-4
refers to: 265806_at
refers to: AT2G18010
t statistic: -8.68015397314483

259834_at
type: EFO_0005072
part of: A-AFFY-2

SIB1
type: EnsemblDatabaseReference

ACS11
type: EnsemblDatabaseReference

ICL
type: EnsemblDatabaseReference

259352_at
type: EFO_0005072
part of: A-AFFY-2

(Factor value) GENOTYPE/wild type genotype
type: EFO_0000001
property type: GENOTYPE
property value: wild type genotype

RFK1
type: EnsemblDatabaseReference

AT4G27280
type: EnsemblDatabaseReference

ATXTH17
type: EnsemblDatabaseReference

Analysis of 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: MicroarrayDifferentialExpressionAnalysis

246293_at
type: EFO_0005072
part of: A-AFFY-2

260957_at
type: EFO_0005072
part of: A-AFFY-2

RGF6
type: EnsemblDatabaseReference

IAA5
type: EnsemblDatabaseReference

(Sample) ecotype/Col-0
type: EFO_0005148
property type: ecotype
property value: Col-0

AT3G04210 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.3761409166301
p value: 0.00626371151171143
refers to: AT3G04210
refers to: 258537_at
t statistic: 6.26150054044905

CORI3 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.52086562960919
p value: 0.0221342639988231
refers to: CORI3
refers to: 254232_at
t statistic: 4.56459826224409

IAA2 DOWN in 'sav3-2' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04306203293767
p value: 0.0177895598902573
refers to: IAA2
refers to: 257766_at
t statistic: -4.80384472112069

(Assay) sav3-2-SH-rep1
type: Assay
has participant: A-AFFY-2

AT3G49960 UP in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.01641819463318
p value: 0.0109383589096482
refers to: AT3G49960
refers to: 252238_at
t statistic: 5.78044226854049

STZ
type: EnsemblDatabaseReference

AT4G23680
type: EnsemblDatabaseReference

ADS1 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18295882785384
p value: 0.00521761002709926
refers to: ADS1
refers to: 260957_at
t statistic: -6.20894486854186

AT5G03350
type: EnsemblDatabaseReference

249306_at
type: EFO_0005072
part of: A-AFFY-2

WRKY70 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.53380499110861
p value: 3.11375873579608E-4
refers to: WRKY70
refers to: 251705_at
t statistic: 11.1162108334819

QQS
type: EnsemblDatabaseReference

AT3G04210 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.06929200874403
p value: 0.0011789484193207
refers to: AT3G04210
refers to: 258537_at
t statistic: 8.33953749732886

AT1G73805
type: EnsemblDatabaseReference

YUC9
type: EnsemblDatabaseReference

AT1G73805 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1486307776618
p value: 5.62836322770473E-4
refers to: AT1G73805
refers to: 260046_at
t statistic: 10.179634349124

ACS11 UP in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.04931013400563
p value: 0.00231556402272777
refers to: 255177_at
refers to: ACS11
t statistic: 9.27105947339729

RGF6 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.12075353940973
p value: 7.41327319426298E-4
refers to: RGF6
refers to: 245336_at
t statistic: -9.37380284554734

(Assay) sav1-1-Wc-rep1
type: Assay
has participant: A-AFFY-2

LECRK44
type: EnsemblDatabaseReference

AT3G49960
type: EnsemblDatabaseReference

GH3.5 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.16151339415031
p value: 2.19231398868242E-4
refers to: GH3.5
refers to: 253908_at
t statistic: -11.9555652675747

ACS4 DOWN in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2362033223963
p value: 0.00513172810452419
refers to: ACS4
refers to: 266830_at
t statistic: -7.33189415648511

AT1G47400 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.47240913938902
p value: 0.0249699028586831
refers to: AT1G47400
refers to: 261684_at
t statistic: 4.38624698267218

AT1G47400 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.71483191262221
p value: 0.0481474263359492
refers to: AT1G47400
refers to: 261684_at
t statistic: 3.63120892228042

251178_at
type: EFO_0005072
part of: A-AFFY-2

Analysis of 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: MicroarrayDifferentialExpressionAnalysis

AT3G03840
type: EnsemblDatabaseReference

261221_at
type: EFO_0005072
part of: A-AFFY-2

CYP81F2
type: EnsemblDatabaseReference

SAUR68 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01270391798829
p value: 0.00405378516187378
refers to: SAUR68
refers to: 259783_at
t statistic: -6.54575747722367

(Sample) organism/Arabidopsis thaliana
type: Arabidopsis thaliana
property type: organism
property value: Arabidopsis thaliana

AT1G47400
type: EnsemblDatabaseReference

IAA1
type: EnsemblDatabaseReference

(Assay) Col-0-SH-rep3
type: Assay
has participant: A-AFFY-2

DIC2 UP in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.21109531116131
p value: 0.016579059540767
refers to: DIC2
refers to: 254120_at
t statistic: 5.13614514637069

(Sample) genotype/sav3-2
type: EFO_0000001
property type: genotype
property value: sav3-2

ARGOS DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.38499040178752
p value: 0.00352893101212955
refers to: 251436_at
refers to: ARGOS
t statistic: -6.73697265149053

WAK2 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.07643411099465
p value: 0.01509463888764
refers to: WAK2
refers to: 259560_at
t statistic: 4.97672084660311

CDF5
type: EnsemblDatabaseReference

AT3G03830
type: EnsemblDatabaseReference

ADS1
type: EnsemblDatabaseReference

ATCKX6
type: EnsemblDatabaseReference

AT1G35710 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.14302928329837
p value: 3.86773208246319E-4
refers to: AT1G35710
refers to: 261339_at
t statistic: 10.6656384207234

WAK1 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 2.77164677834233
p value: 4.88456861148013E-6
refers to: WAK1
refers to: 259561_at
t statistic: 23.553694272221

249777_at
type: EFO_0005072
part of: A-AFFY-2

IAA1 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -2.27820678598624
p value: 5.88516364782389E-4
refers to: 245397_at
refers to: IAA1
t statistic: -9.93278803334564

AT4G23680 DOWN in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.17226937142317
p value: 0.019935459886734
refers to: 254234_at
refers to: AT4G23680
t statistic: -4.85168395752303

267614_at
type: EFO_0005072
part of: A-AFFY-2

253423_at
type: EFO_0005072
part of: A-AFFY-2

AT3G42800 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.34962855800556
p value: 5.99208290554088E-4
refers to: 252765_at
refers to: AT3G42800
t statistic: -9.74129569203316

246633_at
type: EFO_0005072
part of: A-AFFY-2

AT5G62280 DOWN in 'sav3-2' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.69130423354184
p value: 0.0124146779247768
refers to: 247474_at
refers to: AT5G62280
t statistic: -5.32460733531772

AT2G32560
type: EnsemblDatabaseReference

AT5G24210 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.27385504925841
p value: 0.00484925976530614
refers to: AT5G24210
refers to: 249777_at
t statistic: 6.60216167691534

257947_at
type: EFO_0005072
part of: A-AFFY-2

Analysis of 'sav3-2' vs 'wild type' in 'continuous white light'
type: MicroarrayDifferentialExpressionAnalysis

ATERF6 UP in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0674733315502
p value: 0.00489718572119509
refers to: ATERF6
refers to: 245250_at
t statistic: 7.9170649418803

SAUR_AC1
type: EnsemblDatabaseReference

AT1G31690
type: EnsemblDatabaseReference

AT5G41400
type: EnsemblDatabaseReference

(Assay) Col-0-Wc-rep1
type: Assay
has participant: A-AFFY-2

AT3G04210
type: EnsemblDatabaseReference

WRKY54
type: EnsemblDatabaseReference

AT1G32560 DOWN in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01256223702851
p value: 0.0109389119185117
refers to: 256464_at
refers to: AT1G32560
t statistic: -5.72991714040691

AT5G02760 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -2.18987467153425
p value: 4.36479498700607E-5
refers to: AT5G02760
refers to: 251017_at
t statistic: -16.6821973513526

254234_at
type: EFO_0005072
part of: A-AFFY-2

(Sample) genotype/sav1-1
type: EFO_0000001
property type: genotype
property value: sav1-1

LEA18 DOWN in 'sav1-1' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.23442816441693
p value: 0.00865393804832066
refers to: 266544_at
refers to: LEA18
t statistic: -7.45803221972012

258399_at
type: EFO_0005072
part of: A-AFFY-2

259787_at
type: EFO_0005072
part of: A-AFFY-2

ATPER1
type: EnsemblDatabaseReference

AT5G02760
type: EnsemblDatabaseReference

250012_x_at
type: EFO_0005072
part of: A-AFFY-2

265611_at
type: EFO_0005072
part of: A-AFFY-2

SAUR68
type: EnsemblDatabaseReference

CML10 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.00042871515924
p value: 0.00109670790769193
refers to: CML10
refers to: 267076_at
t statistic: 8.46121132823983

255503_at
type: EFO_0005072
part of: A-AFFY-2

AT1G26390
type: EnsemblDatabaseReference

(Sample) organism part/whole organism
type: EFO_0002906
property type: organism part
property value: whole organism

AT1G52690 DOWN in 'sav1-1' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.23832924042866
p value: 0.0281277378597023
refers to: 262128_at
refers to: AT1G52690
t statistic: -4.8421503270091

ECS1
type: EnsemblDatabaseReference

IAA29
type: EnsemblDatabaseReference

AtCYS2 DOWN in 'sav1-1' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02569541521306
p value: 0.0146089545877465
refers to: AtCYS2
refers to: 265672_at
t statistic: -6.03417386309241

PSBB
type: EnsemblDatabaseReference

AT2G46640 DOWN in 'sav1-1' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00596477851032
p value: 0.0126988121396678
refers to: AT2G46640
refers to: 266320_at
t statistic: -6.26881549619674

AT3G50340
type: EnsemblDatabaseReference

ACD6
type: EnsemblDatabaseReference

GA5
type: EnsemblDatabaseReference

STZ UP in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.92175200751464
p value: 0.00781264030634792
refers to: STZ
refers to: 261648_at
t statistic: 6.32352722332813

AT5G18060
type: EnsemblDatabaseReference

RHS13
type: EnsemblDatabaseReference

AT1G29500 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.46654107938401
p value: 7.57868106707318E-4
refers to: AT1G29500
refers to: 259773_at
t statistic: -9.2774563997694

AT1G78450
type: EnsemblDatabaseReference

AT1G29460
type: EnsemblDatabaseReference

256598_at
type: EFO_0005072
part of: A-AFFY-2

264323_at
type: EFO_0005072
part of: A-AFFY-2

245074_at
type: EFO_0005072
part of: A-AFFY-2

AtCYS2
type: EnsemblDatabaseReference

AT3G28420
type: EnsemblDatabaseReference

251705_at
type: EFO_0005072
part of: A-AFFY-2

AT1G19960
type: EnsemblDatabaseReference

CYP85A2
type: EnsemblDatabaseReference

267076_at
type: EFO_0005072
part of: A-AFFY-2

258537_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) Col-0-Wc-rep2
type: Assay
has participant: A-AFFY-2

AT1G29440 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.37055050875208
p value: 0.00276098401845731
refers to: AT1G29440
refers to: 257506_at
t statistic: -7.1846402784466

261648_at
type: EFO_0005072
part of: A-AFFY-2

266320_at
type: EFO_0005072
part of: A-AFFY-2

(Factor value) GROWTH_CONDITION/continuous white light
type: EFO_0000001
property type: GROWTH_CONDITION
property value: continuous white light

IAA2
type: EnsemblDatabaseReference

AT5G62280
type: EnsemblDatabaseReference

AT1G19960 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 2.02789091929289
p value: 4.44801364125056E-5
refers to: AT1G19960
refers to: 261221_at
t statistic: 16.5877991103199

SIB1 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.27061701483336
p value: 2.19231398868242E-4
refers to: SIB1
refers to: 246293_at
t statistic: 11.9628226942197

CML10
type: EnsemblDatabaseReference

259773_at
type: EFO_0005072
part of: A-AFFY-2

CYP71A12
type: EnsemblDatabaseReference

WRKY70
type: EnsemblDatabaseReference

AT3G28420 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05846216482418
p value: 0.0036417294943427
refers to: 257900_at
refers to: AT3G28420
t statistic: -6.68412201972418

LURP1
type: EnsemblDatabaseReference

DIC2
type: EnsemblDatabaseReference

ACS11
type: EnsemblDatabaseReference

AT1G52690 DOWN in 'sav3-2' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.40832396281962
p value: 0.0103210934501495
refers to: 262128_at
refers to: AT1G52690
t statistic: -5.55144740583164

PUB25
type: EnsemblDatabaseReference

RFK1
type: EnsemblDatabaseReference

LUP1 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.67407793601547
p value: 7.75071978564816E-4
refers to: 264100_at
refers to: LUP1
t statistic: -8.97807392123963

247949_at
type: EFO_0005072
part of: A-AFFY-2

RGF6
type: EnsemblDatabaseReference

251677_at
type: EFO_0005072
part of: A-AFFY-2

AT5G41400 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.47843218471569
p value: 3.11375873579608E-4
refers to: 249306_at
refers to: AT5G41400
t statistic: -11.1724716982101

WAK1
type: EnsemblDatabaseReference

256464_at
type: EFO_0005072
part of: A-AFFY-2

AT5G24210
type: EnsemblDatabaseReference

STZ
type: EnsemblDatabaseReference

263497_at
type: EFO_0005072
part of: A-AFFY-2

AT5G03350
type: EnsemblDatabaseReference

AT5G18060 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.67707709023149
p value: 7.66445402788492E-4
refers to: AT5G18060
refers to: 250012_x_at
t statistic: -9.15148550146648

AT1G73805
type: EnsemblDatabaseReference

YUC9 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1271368760569
p value: 0.00341043018921753
refers to: 264323_at
refers to: YUC9
t statistic: 6.80201897590588

257642_at
type: EFO_0005072
part of: A-AFFY-2

AT1G19960 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.94473621896706
p value: 1.43454000897757E-4
refers to: 261221_at
refers to: AT1G19960
t statistic: 12.9788829283382

AT1G78450 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03027902563784
p value: 0.00478012050426878
refers to: AT1G78450
refers to: 263133_at
t statistic: -6.33413300964582

252204_at
type: EFO_0005072
part of: A-AFFY-2

AT2G37030 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -2.08177223010018
p value: 1.43185761174409E-4
refers to: AT2G37030
refers to: 263890_at
t statistic: -13.1050519607158

AT2G37030
type: EnsemblDatabaseReference

253720_at
type: EFO_0005072
part of: A-AFFY-2

256497_at
type: EFO_0005072
part of: A-AFFY-2

LECRK44
type: EnsemblDatabaseReference

AT3G05170
type: EnsemblDatabaseReference

GH3.5
type: EnsemblDatabaseReference

263890_at
type: EFO_0005072
part of: A-AFFY-2

(Factor value) GENOTYPE/sav3-2
type: EFO_0000001
property type: GENOTYPE
property value: sav3-2

AT1G12080
type: EnsemblDatabaseReference

AT2G18010
type: EnsemblDatabaseReference

257506_at
type: EFO_0005072
part of: A-AFFY-2

AT2G23200
type: EnsemblDatabaseReference

ACS11 DOWN in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10397805562774
p value: 3.43680839513044E-4
refers to: ACS11
refers to: 255177_at
t statistic: -10.9265275303065

266544_at
type: EFO_0005072
part of: A-AFFY-2

AT1G32560
type: EnsemblDatabaseReference

245336_at
type: EFO_0005072
part of: A-AFFY-2

AT1G35710 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.69451320465103
p value: 5.41914053497849E-4
refers to: AT1G35710
refers to: 261339_at
t statistic: 10.5829719980947

257766_at
type: EFO_0005072
part of: A-AFFY-2

CDF5
type: EnsemblDatabaseReference

AT3G03830
type: EnsemblDatabaseReference

260152_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) sav1-1-SH-rep3
type: Assay
has participant: A-AFFY-2

(Assay) sav3-2-Wc-rep2
type: Assay
has participant: A-AFFY-2

AT2G25510
type: EnsemblDatabaseReference

261766_at
type: EFO_0005072
part of: A-AFFY-2

CORI3
type: EnsemblDatabaseReference

A-AFFY-2
type: EFO_0000269

ATCKX6
type: EnsemblDatabaseReference

259561_at
type: EFO_0005072
part of: A-AFFY-2

WRKY54 UP in 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.28822729992549
p value: 1.42604878364492E-4
refers to: 257382_at
refers to: WRKY54
t statistic: 13.3963131210291

AT1G52690
type: EnsemblDatabaseReference

256940_at
type: EFO_0005072
part of: A-AFFY-2

LEA18 DOWN in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.36542200181011
p value: 0.00489718572119509
refers to: LEA18
refers to: 266544_at
t statistic: -7.77146391568534

AT4G14100 DOWN in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08148846594459
p value: 0.00223770957777496
refers to: AT4G14100
refers to: 245326_at
t statistic: -10.1965381426427

AT2G25510 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.7693135138495
p value: 0.0029241155577665
refers to: AT2G25510
refers to: 265611_at
t statistic: 7.31924363891088

CYP81F2 UP in 'sav1-1' vs 'wild type' in 'simulated shade for 1 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.06214933103954
p value: 0.0494458829796934
refers to: 247949_at
refers to: CYP81F2
t statistic: 3.65907335849364

WRKY54 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 2.52630794682929
p value: 6.05073097301284E-4
refers to: WRKY54
refers to: 257382_at
t statistic: 9.75982185088223

(Factor value) GENOTYPE/sav1-1
type: EFO_0000001
property type: GENOTYPE
property value: sav1-1

AT2G32560
type: EnsemblDatabaseReference

LUP1
type: EnsemblDatabaseReference

(Assay) Col-0-SH-rep1
type: Assay
has participant: A-AFFY-2

SIB1 UP in 'sav3-2' vs 'wild type' in 'continuous white light'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2542755762016
p value: 0.00800255042262511
refers to: SIB1
refers to: 246293_at
t statistic: 5.9083408880786

AT5G02760 DOWN in 'sav3-2' vs 'wild type' in 'continuous white light'
type: DecreasedDifferentialExpressionRatio
fold change: -1.33255033994023
p value: 0.0108426888206146
refers to: AT5G02760
refers to: 251017_at
t statistic: -5.48890855389231

AT1G31690
type: EnsemblDatabaseReference

244972_at
type: EFO_0005072
part of: A-AFFY-2

AT3G04210
type: EnsemblDatabaseReference