CCNE2 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.17056740301562
p value: 0.0129726268275472
refers to: 205034_at
refers to: CCNE2
t statistic: -5.09015804551026

(Assay) HIGK cells infected with Fusobacterium nucleatum, biological rep2
type: Assay
identifier: HIGK cells infected with Fusobacterium nucleatum, biological rep2
has participant: A-AFFY-33

SOWAHC DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03698376979023
p value: 0.0266052010981202
refers to: 219496_at
refers to: SOWAHC
t statistic: -4.73554600158013

213229_at
type: EFO_0005072
part of: A-AFFY-33

SERPINB2
type: EnsemblDatabaseReference

PIK3C2A
type: EnsemblDatabaseReference

TIPARP
type: EnsemblDatabaseReference

207345_at
type: EFO_0005072
part of: A-AFFY-33

LRRFIP1
type: EnsemblDatabaseReference

ERBB2IP
type: EnsemblDatabaseReference

LRRFIP1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21066928195015
p value: 0.0139111069801931
refers to: LRRFIP1
refers to: 201862_s_at
t statistic: -4.95843022976683

HSPH1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04521493083557
p value: 0.0109124356361515
refers to: HSPH1
refers to: 208744_x_at
t statistic: -5.36440036485005

212077_at
type: EFO_0005072
part of: A-AFFY-33

GCH1
type: EnsemblDatabaseReference

HIC2
type: EnsemblDatabaseReference

CALD1
type: EnsemblDatabaseReference

NFIL3 UP in 'Fusobacterium nucleatum' vs 'uninfected'
type: IncreasedDifferentialExpressionRatio
fold change: 1.04596865751522
p value: 0.0040352006181
refers to: NFIL3
refers to: 203574_at
t statistic: 7.75650727335895

213070_at
type: EFO_0005072
part of: A-AFFY-33

CALD1 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00910978227954
p value: 0.0107552996226017
refers to: CALD1
refers to: 201617_x_at
t statistic: -6.00049718206969

ZNF12
type: EnsemblDatabaseReference

PFKFB3
type: EnsemblDatabaseReference

TUFT1
type: EnsemblDatabaseReference

HSPH1
type: EnsemblDatabaseReference

FOS
type: EnsemblDatabaseReference

DUSP4
type: EnsemblDatabaseReference

SLC25A32
type: EnsemblDatabaseReference

(Sample) organism/Homo sapiens
type: Homo sapiens
property type: organism
property value: Homo sapiens

RGS2
type: EnsemblDatabaseReference

DUSP4 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -2.4174491624781
p value: 3.27669374483093E-5
refers to: DUSP4
refers to: 204014_at
t statistic: -15.4121144906304

RCOR1 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01405989300956
p value: 0.0308889885184746
refers to: 212612_at
refers to: RCOR1
t statistic: -4.45503749806691

202160_at
type: EFO_0005072
part of: A-AFFY-33

(Assay) HIGK cells infected with Fusobacterium nucleatum, biological rep1
type: Assay
identifier: HIGK cells infected with Fusobacterium nucleatum, biological rep1
has participant: A-AFFY-33

SLC7A11
type: EnsemblDatabaseReference

HNRNPA3 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02188000856244
p value: 0.0180350927603849
refers to: 211929_at
refers to: HNRNPA3
t statistic: -4.45996761277426

212585_at
type: EFO_0005072
part of: A-AFFY-33

205807_s_at
type: EFO_0005072
part of: A-AFFY-33

MYC DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.52916683131202
p value: 4.40314236556589E-5
refers to: MYC
refers to: 202431_s_at
t statistic: -14.5337836139972

FN1
type: EnsemblDatabaseReference

206300_s_at
type: EFO_0005072
part of: A-AFFY-33

CD44
type: EnsemblDatabaseReference

MYC
type: EnsemblDatabaseReference

210512_s_at
type: EFO_0005072
part of: A-AFFY-33

(Sample) infect/Streptococcus gordonii
type: NCBITaxon 1302
property type: infect
property value: Streptococcus gordonii

201694_s_at
type: EFO_0005072
part of: A-AFFY-33

208937_s_at
type: EFO_0005072
part of: A-AFFY-33

NET1
type: EnsemblDatabaseReference

PFKFB3 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.23452221731984
p value: 0.00566850178081669
refers to: 202464_s_at
refers to: PFKFB3
t statistic: -6.96680696879056

SCAF8 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01259369956961
p value: 0.0121703123444339
refers to: SCAF8
refers to: 203250_at
t statistic: -5.16382349470792

SCAF8
type: EnsemblDatabaseReference

TDG
type: EnsemblDatabaseReference

204614_at
type: EFO_0005072
part of: A-AFFY-33

MIR22HG
type: EnsemblDatabaseReference

GADD45B
type: EnsemblDatabaseReference

GADD45B UP in 'Streptococcus gordonii' vs 'uninfected'
type: IncreasedDifferentialExpressionRatio
fold change: 1.38734540757078
p value: 4.76327351102283E-6
refers to: 209304_x_at
refers to: GADD45B
t statistic: 20.7187189201672

SS18L1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.42385858826936
p value: 0.00198439991502819
refers to: 213140_s_at
refers to: SS18L1
t statistic: -8.21289725528965

KDM2A
type: EnsemblDatabaseReference

RBM15
type: EnsemblDatabaseReference

FERMT2
type: EnsemblDatabaseReference

HSPH1
type: EnsemblDatabaseReference

FN1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00686521687684
p value: 0.00214394503078534
refers to: 214701_s_at
refers to: FN1
t statistic: -8.07383104028108

DUSP4
type: EnsemblDatabaseReference

DICER1
type: EnsemblDatabaseReference

SLC25A32
type: EnsemblDatabaseReference

MAT2A
type: EnsemblDatabaseReference

SLC7A11
type: EnsemblDatabaseReference

NET1 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.13796231550559
p value: 0.00380955920424024
refers to: NET1
refers to: 201830_s_at
t statistic: -7.88036241917291

213051_at
type: EFO_0005072
part of: A-AFFY-33

NFIL3
type: EnsemblDatabaseReference

ZC3HAV1
type: EnsemblDatabaseReference

AKAP12
type: EnsemblDatabaseReference

MYC
type: EnsemblDatabaseReference

DUSP4 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -2.29836608726081
p value: 3.1614971071875E-4
refers to: DUSP4
refers to: 204014_at
t statistic: -12.6390938896443

205034_at
type: EFO_0005072
part of: A-AFFY-33

212195_at
type: EFO_0005072
part of: A-AFFY-33

SERPINB2
type: EnsemblDatabaseReference

SCAF8
type: EnsemblDatabaseReference

203743_s_at
type: EFO_0005072
part of: A-AFFY-33

LRRFIP1
type: EnsemblDatabaseReference

DUSP4 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -2.20175699839804
p value: 1.04558077012038E-6
refers to: DUSP4
refers to: 204015_s_at
t statistic: -27.9153606176834

CHSY1
type: EnsemblDatabaseReference

GADD45B UP in 'Streptococcus gordonii' vs 'uninfected'
type: IncreasedDifferentialExpressionRatio
fold change: 1.65963941965759
p value: 8.97591686292863E-6
refers to: GADD45B
refers to: 207574_s_at
t statistic: 18.3111540935121

FERMT2
type: EnsemblDatabaseReference

PTHLH
type: EnsemblDatabaseReference

211756_at
type: EFO_0005072
part of: A-AFFY-33

AKAP12 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.54433237610943
p value: 2.31258516346611E-5
refers to: AKAP12
refers to: 210517_s_at
t statistic: -16.3629545672145

204224_s_at
type: EFO_0005072
part of: A-AFFY-33

FOS
type: EnsemblDatabaseReference

DICER1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05968367843343
p value: 0.0355858517554199
refers to: DICER1
refers to: 213229_at
t statistic: -3.40368415525941

210793_s_at
type: EFO_0005072
part of: A-AFFY-33

NFIL3
type: EnsemblDatabaseReference

214701_s_at
type: EFO_0005072
part of: A-AFFY-33

FOS UP in 'Streptococcus gordonii' vs 'uninfected'
type: IncreasedDifferentialExpressionRatio
fold change: 2.64534557095283
p value: 2.98435539572659E-5
refers to: FOS
refers to: 209189_at
t statistic: 15.736832664683

SLC5A3
type: EnsemblDatabaseReference

SLC30A1 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.37163362623044
p value: 0.00448864896776147
refers to: SLC30A1
refers to: 212907_at
t statistic: -7.45055785219771

HIC2 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04041613452465
p value: 0.0141169742864977
refers to: HIC2
refers to: 212964_at
t statistic: -5.64511644428855

203250_at
type: EFO_0005072
part of: A-AFFY-33

(Sample) cell type/epithelial cell
type: CL_0000066
property type: cell type
property value: epithelial cell

IL6ST DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.27037066918774
p value: 0.00697316647427471
refers to: IL6ST
refers to: 212195_at
t statistic: -6.07231343597212

LIF
type: EnsemblDatabaseReference

PNN
type: EnsemblDatabaseReference

MIR22HG
type: EnsemblDatabaseReference

GADD45B
type: EnsemblDatabaseReference

PTHLH
type: EnsemblDatabaseReference

204286_s_at
type: EFO_0005072
part of: A-AFFY-33

FST
type: EnsemblDatabaseReference

OSBPL8 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.34847515173444
p value: 0.0152067039433772
refers to: OSBPL8
refers to: 212585_at
t statistic: -4.70316788027186

HSPH1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3510469292451
p value: 0.00760768414368428
refers to: HSPH1
refers to: 206976_s_at
t statistic: -5.86581454838805

GCH1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.15492409771603
p value: 0.0130027156705757
refers to: GCH1
refers to: 204224_s_at
t statistic: -5.07451077811681

KDM2A
type: EnsemblDatabaseReference

RBM15
type: EnsemblDatabaseReference

E-GEOD-6927
type: microarray 1colour mrna differential
RO_0002162: Homo sapiens
description: Transcriptional profiling was utilized to define the biological pathways of gingival epithelial cells modulated by co-culture with the oral commensal S. gordonii and the opportunistic commensal F. nucleatum. We used microarrays to detail the global programme of gene expression underlying infection and identified distinct classes of up- and down-regulated genes during this process. Experiment Overall Design: Gingival epithelial HIGK cells were sham infected (CTRL) and infected with either the oral commensal S. gordonii (Sg) or the opportunistic commensal F. nucleatum (Fn). These samples were hybridized to Affymetrix microarrays. Understanding how host cells have adapted to commensals, and how barrier cells respond to limit their impact, provides a mechanistic biological basis of health in the mixed bacterial-human ecosystem of the oral cavity.
uses data from: http://identifiers.org/pubmed/17307939

(Assay) HIGK cells infected with Streptococcus gordonii, biological rep4
type: Assay
identifier: HIGK cells infected with Streptococcus gordonii, biological rep4
has participant: A-AFFY-33

(Assay) Sham infected HIGK cells, biological rep3
type: Assay
identifier: Sham infected HIGK cells, biological rep3
has participant: A-AFFY-33

EGR1 UP in 'Fusobacterium nucleatum' vs 'uninfected'
type: IncreasedDifferentialExpressionRatio
fold change: 1.55676769632231
p value: 0.00242053732529961
refers to: EGR1
refers to: 201694_s_at
t statistic: 8.68795260025806

DKK1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.27705974984584
p value: 5.03660869562405E-4
refers to: DKK1
refers to: 204602_at
t statistic: -10.3893665263917

MAT2A DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.22702815624979
p value: 1.07576285004951E-4
refers to: 200768_s_at
refers to: MAT2A
t statistic: -12.8500101522206

HSPH1 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18508786998472
p value: 0.0308889885184746
refers to: HSPH1
refers to: 206976_s_at
t statistic: -4.45582946146457

ZC3HAV1
type: EnsemblDatabaseReference

CD44 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.64461096530351
p value: 0.00619605006537932
refers to: CD44
refers to: 217523_at
t statistic: -6.37695389618526

AKAP12
type: EnsemblDatabaseReference

SLC30A1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.69207551512696
p value: 5.81787642882772E-4
refers to: SLC30A1
refers to: 212907_at
t statistic: -9.94376518506687

Analysis of 'Fusobacterium nucleatum' vs 'uninfected'
type: MicroarrayDifferentialExpressionAnalysis

RGS2 UP in 'Fusobacterium nucleatum' vs 'uninfected'
type: IncreasedDifferentialExpressionRatio
fold change: 1.01106322903864
p value: 0.00968484933252545
refers to: RGS2
refers to: 202388_at
t statistic: 6.15299193534943

206976_s_at
type: EFO_0005072
part of: A-AFFY-33

ID1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09594542197402
p value: 0.00571275948132514
refers to: ID1
refers to: 208937_s_at
t statistic: -6.54903710562951

NUP98
type: EnsemblDatabaseReference

RHOB DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.44415881110852
p value: 3.1614971071875E-4
refers to: RHOB
refers to: 212099_at
t statistic: -12.6184616821802

VEGFA
type: EnsemblDatabaseReference

FST
type: EnsemblDatabaseReference

KLF10 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.56581020929382
p value: 0.00248113609809818
refers to: KLF10
refers to: 202393_s_at
t statistic: -7.84919275432384

KLF10
type: EnsemblDatabaseReference

212907_at
type: EFO_0005072
part of: A-AFFY-33

KDM2A DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01912783985837
p value: 0.00954008880518563
refers to: KDM2A
refers to: 208988_at
t statistic: -5.5520030774768

CHSY1
type: EnsemblDatabaseReference

TDG DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.15607471849669
p value: 0.0129139201212234
refers to: 203743_s_at
refers to: TDG
t statistic: -5.09626562896745

(Factor value) INFECT/Streptococcus gordonii
type: NCBITaxon 1302
property type: INFECT
property value: Streptococcus gordonii

SLC20A1
type: EnsemblDatabaseReference

DKK1
type: EnsemblDatabaseReference

EGR1
type: EnsemblDatabaseReference

202393_s_at
type: EFO_0005072
part of: A-AFFY-33

200768_s_at
type: EFO_0005072
part of: A-AFFY-33

212099_at
type: EFO_0005072
part of: A-AFFY-33

PMAIP1
type: EnsemblDatabaseReference

ERBB2IP DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06459856761245
p value: 0.0105933193702197
refers to: 217941_s_at
refers to: ERBB2IP
t statistic: -5.42438075022183

VEGFA DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2365741368548
p value: 0.00710852790250958
refers to: VEGFA
refers to: 210512_s_at
t statistic: -6.02568113345462

FST DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.19009323967676
p value: 0.00409915286776272
refers to: FST
refers to: 207345_at
t statistic: -7.11942528426031

201862_s_at
type: EFO_0005072
part of: A-AFFY-33

TIPARP DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10381132958477
p value: 0.00248127691880159
refers to: TIPARP
refers to: 212665_at
t statistic: -7.82120727184804

NRIP1
type: EnsemblDatabaseReference

(Assay) Sham infected HIGK cells, biological rep2
type: Assay
identifier: Sham infected HIGK cells, biological rep2
has participant: A-AFFY-33

SLC5A3
type: EnsemblDatabaseReference

202599_s_at
type: EFO_0005072
part of: A-AFFY-33

ZNF12 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05205420412665
p value: 0.00919480530260529
refers to: ZNF12
refers to: 219571_s_at
t statistic: -5.6180835353704

FST DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09797282824006
p value: 0.0134634394891379
refers to: 207345_at
refers to: FST
t statistic: -5.7216691183597

DUSP7 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05374033571174
p value: 0.0028907901343732
refers to: DUSP7
refers to: 213848_at
t statistic: -7.58799445118905

SNAI2 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.49423284711663
p value: 2.17197604551652E-4
refers to: SNAI2
refers to: 213139_at
t statistic: -13.5066837222422

201661_s_at
type: EFO_0005072
part of: A-AFFY-33

LIF
type: EnsemblDatabaseReference

212612_at
type: EFO_0005072
part of: A-AFFY-33

IL6ST
type: EnsemblDatabaseReference

GADD45B UP in 'Streptococcus gordonii' vs 'uninfected'
type: IncreasedDifferentialExpressionRatio
fold change: 1.16444202006508
p value: 5.05082198911781E-5
refers to: 209305_s_at
refers to: GADD45B
t statistic: 14.2132362504256

GADD45B UP in 'Fusobacterium nucleatum' vs 'uninfected'
type: IncreasedDifferentialExpressionRatio
fold change: 1.69729848809379
p value: 9.57193553999961E-6
refers to: GADD45B
refers to: 207574_s_at
t statistic: 24.4557691172116

PNN
type: EnsemblDatabaseReference

DKK1
type: EnsemblDatabaseReference

EGR1
type: EnsemblDatabaseReference

DNAJA1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.32859731235477
p value: 0.00167187837096572
refers to: DNAJA1
refers to: 200880_at
t statistic: -8.4114440207865

RCOR1
type: EnsemblDatabaseReference

ACSL3
type: EnsemblDatabaseReference

SNAI2 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -2.06597320386625
p value: 5.64425555739078E-5
refers to: 213139_at
refers to: SNAI2
t statistic: -13.9452206576157

MIR22HG DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.29290583341973
p value: 1.66846745019263E-4
refers to: MIR22HG
refers to: 214696_at
t statistic: -12.1861742801404

LIF DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.73597593333704
p value: 4.76327351102283E-6
refers to: LIF
refers to: 205266_at
t statistic: -20.7639701004922

(Sample) cell line/HIGK cells
type: EFO_0000001
property type: cell line
property value: HIGK cells

(Assay) HIGK cells infected with Fusobacterium nucleatum, biological rep3
type: Assay
identifier: HIGK cells infected with Fusobacterium nucleatum, biological rep3
has participant: A-AFFY-33

DUSP4 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -2.01094076551214
p value: 9.57193553999961E-6
refers to: DUSP4
refers to: 204015_s_at
t statistic: -24.5478472503051

NET1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.44698562548446
p value: 5.25754677103229E-4
refers to: 201830_s_at
refers to: NET1
t statistic: -10.2478228375154

214336_s_at
type: EFO_0005072
part of: A-AFFY-33

GADD45B UP in 'Fusobacterium nucleatum' vs 'uninfected'
type: IncreasedDifferentialExpressionRatio
fold change: 1.34268620056547
p value: 7.15243728460201E-5
refers to: GADD45B
refers to: 209304_x_at
t statistic: 16.7150322360182

NRIP1
type: EnsemblDatabaseReference

213140_s_at
type: EFO_0005072
part of: A-AFFY-33

EGR1 UP in 'Streptococcus gordonii' vs 'uninfected'
type: IncreasedDifferentialExpressionRatio
fold change: 1.58543389265087
p value: 5.25754677103229E-4
refers to: EGR1
refers to: 201694_s_at
t statistic: 10.1683071214203

SERPINB2 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.9091062237427
p value: 1.14062436051115E-4
refers to: 204614_at
refers to: SERPINB2
t statistic: -15.4803277555747

CCNE2
type: EnsemblDatabaseReference

209305_s_at
type: EFO_0005072
part of: A-AFFY-33

200880_at
type: EFO_0005072
part of: A-AFFY-33

217523_at
type: EFO_0005072
part of: A-AFFY-33

(Sample) infect/uninfected
type: EFO_0001460
property type: infect
property value: uninfected

ZC3HAV1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.25706541819785
p value: 6.56510950957725E-5
refers to: ZC3HAV1
refers to: 213051_at
t statistic: -13.630302584207

221749_at
type: EFO_0005072
part of: A-AFFY-33

205266_at
type: EFO_0005072
part of: A-AFFY-33

IL6ST
type: EnsemblDatabaseReference

219571_s_at
type: EFO_0005072
part of: A-AFFY-33

YTHDF3
type: EnsemblDatabaseReference

209304_x_at
type: EFO_0005072
part of: A-AFFY-33

GADD45B UP in 'Fusobacterium nucleatum' vs 'uninfected'
type: IncreasedDifferentialExpressionRatio
fold change: 1.13526238457995
p value: 2.16150912252842E-4
refers to: 209305_s_at
refers to: GADD45B
t statistic: 13.8377073405472

NUP98
type: EnsemblDatabaseReference

208988_at
type: EFO_0005072
part of: A-AFFY-33

VEGFA
type: EnsemblDatabaseReference

(Factor value) INFECT/uninfected
type: EFO_0001460
property type: INFECT
property value: uninfected

KLF10
type: EnsemblDatabaseReference

Homo sapiens
type: OBI_0100026

PFKFB3 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3088430357342
p value: 0.00156745861927649
refers to: PFKFB3
refers to: 202464_s_at
t statistic: -8.59223012057222

214696_at
type: EFO_0005072
part of: A-AFFY-33

SLC20A1
type: EnsemblDatabaseReference

212964_at
type: EFO_0005072
part of: A-AFFY-33

213139_at
type: EFO_0005072
part of: A-AFFY-33

201737_s_at
type: EFO_0005072
part of: A-AFFY-33

PMAIP1 UP in 'Fusobacterium nucleatum' vs 'uninfected'
type: IncreasedDifferentialExpressionRatio
fold change: 1.16937662197449
p value: 0.0445609743558591
refers to: 204286_s_at
refers to: PMAIP1
t statistic: 3.97255473719355

203044_at
type: EFO_0005072
part of: A-AFFY-33

YTHDF3 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.33100968403044
p value: 6.69144023075766E-4
refers to: YTHDF3
refers to: 221749_at
t statistic: -9.74523250260173

DNAJA1
type: EnsemblDatabaseReference

PMAIP1
type: EnsemblDatabaseReference

SS18L1
type: EnsemblDatabaseReference

RCOR1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.11264550652562
p value: 0.00747098711311536
refers to: 212612_at
refers to: RCOR1
t statistic: -5.93034030051221

LIF DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.74581058641613
p value: 1.51449307306297E-5
refers to: LIF
refers to: 205266_at
t statistic: -22.0122614922526

209189_at
type: EFO_0005072
part of: A-AFFY-33

CD44 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.41462293019237
p value: 0.0166846860035939
refers to: CD44
refers to: 217523_at
t statistic: -5.35530055147522

HSPH1 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06550868398779
p value: 0.0265173399226434
refers to: HSPH1
refers to: 208744_x_at
t statistic: -4.74250203854973

Analysis of 'Streptococcus gordonii' vs 'uninfected'
type: MicroarrayDifferentialExpressionAnalysis

208744_x_at
type: EFO_0005072
part of: A-AFFY-33

CHAC1
type: EnsemblDatabaseReference

SNAI2
type: EnsemblDatabaseReference

CHAC1 UP in 'Streptococcus gordonii' vs 'uninfected'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17716624966132
p value: 0.0011148214837224
refers to: 219270_at
refers to: CHAC1
t statistic: 9.00229487328386

221020_s_at
type: EFO_0005072
part of: A-AFFY-33

RHOB
type: EnsemblDatabaseReference

204602_at
type: EFO_0005072
part of: A-AFFY-33

SOWAHC
type: EnsemblDatabaseReference

OSBPL8
type: EnsemblDatabaseReference

PIK3C2A DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06092828019913
p value: 0.0114230280996584
refers to: PIK3C2A
refers to: 213070_at
t statistic: -5.26190536926006

ACSL3 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18123006079356
p value: 0.0139462353877699
refers to: 201661_s_at
refers to: ACSL3
t statistic: -4.92304124273591

RCOR1
type: EnsemblDatabaseReference

DNAJA1
type: EnsemblDatabaseReference

(Sample) infect/Fusobacterium nucleatum
type: NCBITaxon 851
property type: infect
property value: Fusobacterium nucleatum

CALD1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04400488433838
p value: 0.00741052360308973
refers to: CALD1
refers to: 212077_at
t statistic: -5.94340673048571

ACSL3
type: EnsemblDatabaseReference

FOS UP in 'Fusobacterium nucleatum' vs 'uninfected'
type: IncreasedDifferentialExpressionRatio
fold change: 2.3758391126
p value: 3.51038842171077E-5
refers to: FOS
refers to: 209189_at
t statistic: 18.6582111128085

(Assay) HIGK cells infected with Streptococcus gordonii, biological rep2
type: Assay
identifier: HIGK cells infected with Streptococcus gordonii, biological rep2
has participant: A-AFFY-33

(Assay) Sham infected HIGK cells, biological rep4
type: Assay
identifier: Sham infected HIGK cells, biological rep4
has participant: A-AFFY-33

CREBBP
type: EnsemblDatabaseReference

(Factor value) INFECT/Fusobacterium nucleatum
type: NCBITaxon 851
property type: INFECT
property value: Fusobacterium nucleatum

RBM15 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10586578137301
p value: 0.00263170636138458
refers to: RBM15
refers to: 219286_s_at
t statistic: -7.74109146865007

CCNE2
type: EnsemblDatabaseReference

201920_at
type: EFO_0005072
part of: A-AFFY-33

FERMT2 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04153963124242
p value: 0.00100449394134143
refers to: FERMT2
refers to: 209210_s_at
t statistic: -9.19733148623281

PALLD
type: EnsemblDatabaseReference

(Assay) HIGK cells infected with Streptococcus gordonii, biological rep1
type: Assay
identifier: HIGK cells infected with Streptococcus gordonii, biological rep1
has participant: A-AFFY-33

202464_s_at
type: EFO_0005072
part of: A-AFFY-33

212665_at
type: EFO_0005072
part of: A-AFFY-33

ID1
type: EnsemblDatabaseReference

SLC7A11 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00934814265518
p value: 0.0136377345445569
refers to: 217678_at
refers to: SLC7A11
t statistic: -4.99720894533879

217678_at
type: EFO_0005072
part of: A-AFFY-33

RHOB DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.8708723382846
p value: 3.31637335653014E-5
refers to: RHOB
refers to: 212099_at
t statistic: -15.2393792681642

203574_at
type: EFO_0005072
part of: A-AFFY-33

YTHDF3
type: EnsemblDatabaseReference

SERPINB2 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -2.01719529102159
p value: 8.59125166509505E-6
refers to: 204614_at
refers to: SERPINB2
t statistic: -18.7836358377806

217941_s_at
type: EFO_0005072
part of: A-AFFY-33

NET1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.29272702820167
p value: 0.00399208921241557
refers to: 201829_at
refers to: NET1
t statistic: -7.17099974447731

PNN DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09650563452491
p value: 0.00751177070112242
refers to: 212037_at
refers to: PNN
t statistic: -5.92280104225062

202388_at
type: EFO_0005072
part of: A-AFFY-33

201617_x_at
type: EFO_0005072
part of: A-AFFY-33

SLC30A1
type: EnsemblDatabaseReference

CHSY1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07747451954528
p value: 0.00130094563205632
refers to: CHSY1
refers to: 203044_at
t statistic: -8.81945540911356

209210_s_at
type: EFO_0005072
part of: A-AFFY-33

MARCH6
type: EnsemblDatabaseReference

HNRNPA3
type: EnsemblDatabaseReference

211929_at
type: EFO_0005072
part of: A-AFFY-33

SS18L1
type: EnsemblDatabaseReference

219286_s_at
type: EFO_0005072
part of: A-AFFY-33

NRIP1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.41645735019236
p value: 0.0163853144573553
refers to: 202599_s_at
refers to: NRIP1
t statistic: -4.58310543994403

200897_s_at
type: EFO_0005072
part of: A-AFFY-33

BCAR3 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05867129923853
p value: 0.00571275948132514
refers to: BCAR3
refers to: 204032_at
t statistic: -6.55814980462864

BCAR3
type: EnsemblDatabaseReference

A-AFFY-33
type: EFO_0000269

LRRFIP1 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.16063292107275
p value: 0.0313374115226032
refers to: LRRFIP1
refers to: 201862_s_at
t statistic: -4.43479949265082

DUSP7
type: EnsemblDatabaseReference

(Assay) HIGK cells infected with Fusobacterium nucleatum, biological rep4
type: Assay
identifier: HIGK cells infected with Fusobacterium nucleatum, biological rep4
has participant: A-AFFY-33

CHAC1
type: EnsemblDatabaseReference

SNAI2
type: EnsemblDatabaseReference

202431_s_at
type: EFO_0005072
part of: A-AFFY-33

SS18L1 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18963363928609
p value: 0.0161931635985891
refers to: 213140_s_at
refers to: SS18L1
t statistic: -5.40749339730765

PTHLH DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.30181421543462
p value: 0.0020201966496734
refers to: PTHLH
refers to: 206300_s_at
t statistic: -8.17886994339497

RHOB
type: EnsemblDatabaseReference

SLC20A1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.13678122937045
p value: 8.42849661971589E-4
refers to: 201920_at
refers to: SLC20A1
t statistic: -9.44487359945119

213848_at
type: EFO_0005072
part of: A-AFFY-33

SOWAHC
type: EnsemblDatabaseReference

OSBPL8
type: EnsemblDatabaseReference

COPA DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.39471960605809
p value: 4.5424390833232E-4
refers to: COPA
refers to: 214336_s_at
t statistic: -11.7108184914804

(Assay) HIGK cells infected with Streptococcus gordonii, biological rep3
type: Assay
identifier: HIGK cells infected with Streptococcus gordonii, biological rep3
has participant: A-AFFY-33

PLOD2
type: EnsemblDatabaseReference

204032_at
type: EFO_0005072
part of: A-AFFY-33

201830_s_at
type: EFO_0005072
part of: A-AFFY-33

FN1 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.60673628406913
p value: 4.5424390833232E-4
refers to: FN1
refers to: 214701_s_at
t statistic: -11.6527955101387

COPA
type: EnsemblDatabaseReference

BCAR3
type: EnsemblDatabaseReference

CREBBP
type: EnsemblDatabaseReference

PLOD2 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.16087200687377
p value: 0.00668532034197468
refers to: PLOD2
refers to: 202620_s_at
t statistic: -6.23067166477859

DUSP7
type: EnsemblDatabaseReference

212944_at
type: EFO_0005072
part of: A-AFFY-33

PIK3C2A
type: EnsemblDatabaseReference

PALLD
type: EnsemblDatabaseReference

CALD1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09462902287581
p value: 0.00680953566881534
refers to: CALD1
refers to: 201617_x_at
t statistic: -6.14029605681276

ID1
type: EnsemblDatabaseReference

ERBB2IP
type: EnsemblDatabaseReference

212037_at
type: EFO_0005072
part of: A-AFFY-33

TUFT1 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10738355917093
p value: 9.26913054497304E-4
refers to: TUFT1
refers to: 205807_s_at
t statistic: -9.31315808352673

202620_s_at
type: EFO_0005072
part of: A-AFFY-33

207574_s_at
type: EFO_0005072
part of: A-AFFY-33

(Assay) Sham infected HIGK cells, biological rep1
type: Assay
identifier: Sham infected HIGK cells, biological rep1
has participant: A-AFFY-33

GCH1
type: EnsemblDatabaseReference

PTHLH DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10295350280918
p value: 0.0011148214837224
refers to: PTHLH
refers to: 211756_at
t statistic: -8.99730405465029

219496_at
type: EFO_0005072
part of: A-AFFY-33

219270_at
type: EFO_0005072
part of: A-AFFY-33

HIC2
type: EnsemblDatabaseReference

SLC20A1 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02829939978585
p value: 0.00358774678317043
refers to: 201920_at
refers to: SLC20A1
t statistic: -7.99764009243527

PFKFB3
type: EnsemblDatabaseReference

SLC30A1
type: EnsemblDatabaseReference

TUFT1
type: EnsemblDatabaseReference

204015_s_at
type: EFO_0005072
part of: A-AFFY-33

COPA
type: EnsemblDatabaseReference

MARCH6
type: EnsemblDatabaseReference

RGS2
type: EnsemblDatabaseReference

PALLD DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10969920475795
p value: 0.00760768414368428
refers to: 200897_s_at
refers to: PALLD
t statistic: -5.87030409665181

HNRNPA3
type: EnsemblDatabaseReference

FN1
type: EnsemblDatabaseReference

AKAP12 DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.42129843338215
p value: 1.49094677562348E-4
refers to: AKAP12
refers to: 210517_s_at
t statistic: -14.728341580213

CD44
type: EnsemblDatabaseReference

PTHLH DOWN in 'Fusobacterium nucleatum' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14467638908682
p value: 0.0074471987046176
refers to: 206300_s_at
refers to: PTHLH
t statistic: -6.56750728547136

210517_s_at
type: EFO_0005072
part of: A-AFFY-33

SLC5A3 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03336016339081
p value: 0.00583130991423052
refers to: SLC5A3
refers to: 212944_at
t statistic: -6.45961026305406

SLC25A32 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21125024112855
p value: 0.00160364664833155
refers to: SLC25A32
refers to: 221020_s_at
t statistic: -8.54912201062426

CREBBP DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01223139254175
p value: 0.00944083977768019
refers to: CREBBP
refers to: 202160_at
t statistic: -5.57236492416109

TDG
type: EnsemblDatabaseReference

NET1
type: EnsemblDatabaseReference

MARCH6 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08157975535666
p value: 0.0338977767834158
refers to: MARCH6
refers to: 201737_s_at
t statistic: -3.46239380324935

NUP98 DOWN in 'Streptococcus gordonii' vs 'uninfected'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18875552287092
p value: 5.03660869562405E-4
refers to: 210793_s_at
refers to: NUP98
t statistic: -10.4411288300539

TIPARP
type: EnsemblDatabaseReference

201829_at
type: EFO_0005072
part of: A-AFFY-33

PLOD2
type: EnsemblDatabaseReference

DICER1
type: EnsemblDatabaseReference

CALD1
type: EnsemblDatabaseReference

MAT2A
type: EnsemblDatabaseReference

204014_at
type: EFO_0005072
part of: A-AFFY-33

ZNF12
type: EnsemblDatabaseReference