MCM2
type: EnsemblDatabaseReference

APBA2 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21571031865787
p value: 0.0429905599270714
refers to: 209871_s_at
refers to: APBA2
t statistic: -3.48948246777546

SOX4 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -2.21703841891593
p value: 0.0350289033762347
refers to: SOX4
refers to: 201417_at
t statistic: -4.35560505868685

LTBP3 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.62949876002472
p value: 0.0418424871772506
refers to: 219922_s_at
refers to: LTBP3
t statistic: -3.51685949164626

CEP55
type: EnsemblDatabaseReference

KLRB1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.54854426637285
p value: 0.0187976685604282
refers to: KLRB1
refers to: 214470_at
t statistic: -5.39295983165517

TNFSF10 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.13615382364529
p value: 0.0244975836634965
refers to: TNFSF10
refers to: 202688_at
t statistic: 4.26527036702957

205798_at
type: EFO_0005072
part of: A-AFFY-33

(Sample) organism/Homo sapiens
type: Homo sapiens
property type: organism
property value: Homo sapiens

205024_s_at
type: EFO_0005072
part of: A-AFFY-33

MCM5
type: EnsemblDatabaseReference

SCML1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.62571609563398
p value: 0.0246115123556339
refers to: SCML1
refers to: 218793_s_at
t statistic: -4.97272684383121

203418_at
type: EFO_0005072
part of: A-AFFY-33

201136_at
type: EFO_0005072
part of: A-AFFY-33

218611_at
type: EFO_0005072
part of: A-AFFY-33

MCM4
type: EnsemblDatabaseReference

KIAA0101
type: EnsemblDatabaseReference

IL6ST DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.36714727932235
p value: 0.0350289033762347
refers to: IL6ST
refers to: 212195_at
t statistic: -4.36744836480884

CHI3L2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.93214365281558
p value: 0.00133298864004891
refers to: CHI3L2
refers to: 213060_s_at
t statistic: 11.4397441299683

IFI44 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.21221454644424
p value: 0.00264388750286295
refers to: 214453_s_at
refers to: IFI44
t statistic: 8.12068208607345

IFI6 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.63238081542583
p value: 0.0190302158786811
refers to: 204415_at
refers to: IFI6
t statistic: 5.37577522893668

SORL1
type: EnsemblDatabaseReference

MEST
type: EnsemblDatabaseReference

RTP4 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.09409905867718
p value: 0.012060304282599
refers to: RTP4
refers to: 219684_at
t statistic: 5.60652204841339

RTP4
type: EnsemblDatabaseReference

YWHAE
type: EnsemblDatabaseReference

MCM4
type: EnsemblDatabaseReference

SMC4 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.43767707139924
p value: 0.0136357434282858
refers to: SMC4
refers to: 201663_s_at
t statistic: 5.35779218166315

MLXIP DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01854924578749
p value: 0.0298209340545692
refers to: MLXIP
refers to: 202519_at
t statistic: -4.61920077101341

NR3C2 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.41639638740471
p value: 0.0100201079095591
refers to: 205259_at
refers to: NR3C2
t statistic: -6.42221800183142

KIAA0101 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4585881344906
p value: 0.00218500040011149
refers to: 202503_s_at
refers to: KIAA0101
t statistic: 8.87878984831585

LEF1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.060999868962
p value: 0.0434577242881154
refers to: LEF1
refers to: 221558_s_at
t statistic: -3.47700633135618

RBM38 DOWN in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00523981335201
p value: 0.0449730528143238
refers to: 212430_at
refers to: RBM38
t statistic: -3.98575053072093

HSPB11 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.03346315760293
p value: 0.0170951185718774
refers to: 203960_s_at
refers to: HSPB11
t statistic: 4.90363180809993

RNF130
type: EnsemblDatabaseReference

EIF2AK2 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.28386163988574
p value: 0.0117902388328664
refers to: EIF2AK2
refers to: 213294_at
t statistic: 5.80505736491508

201292_at
type: EFO_0005072
part of: A-AFFY-33

TSC22D3
type: EnsemblDatabaseReference

DUSP8
type: EnsemblDatabaseReference

GMNN UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.54976325783325
p value: 0.0215660545823873
refers to: 218350_s_at
refers to: GMNN
t statistic: 4.48854428611162

210559_s_at
type: EFO_0005072
part of: A-AFFY-33

CENPM UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.11991742159016
p value: 0.0150714822881324
refers to: CENPM
refers to: 218741_at
t statistic: 5.17492289574625

RNF130
type: EnsemblDatabaseReference

SC5D DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04667225300133
p value: 0.0348213409337924
refers to: SC5D
refers to: 211423_s_at
t statistic: -3.76420046611472

LYST UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22610469215866
p value: 0.0133538100481615
refers to: 203518_at
refers to: LYST
t statistic: 5.4095722440439

IFI27 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 3.37128950620744
p value: 0.0118999998992165
refers to: IFI27
refers to: 202411_at
t statistic: 5.48141937832549

MCM5 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.26327193349833
p value: 0.0310665469855087
refers to: MCM5
refers to: 216237_s_at
t statistic: 3.90388059848622

TSC22D3
type: EnsemblDatabaseReference

DUSP8
type: EnsemblDatabaseReference

(Sample) cell type/CD4-positive T cell
type: CL_0000084
property type: cell type
property value: CD4-positive T cell

204146_at
type: EFO_0005072
part of: A-AFFY-33

209674_at
type: EFO_0005072
part of: A-AFFY-33

CD9
type: EnsemblDatabaseReference

DUSP8 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04481275771933
p value: 0.00133298864004891
refers to: 206374_at
refers to: DUSP8
t statistic: -12.2023269320115

MAFF
type: EnsemblDatabaseReference

DGKA
type: EnsemblDatabaseReference

CISD1
type: EnsemblDatabaseReference

202309_at
type: EFO_0005072
part of: A-AFFY-33

PCNA
type: EnsemblDatabaseReference

LAG3 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.16130777502427
p value: 0.0262788831416298
refers to: LAG3
refers to: 206486_at
t statistic: 4.1313056593314

IRF7
type: EnsemblDatabaseReference

CD9
type: EnsemblDatabaseReference

CDK1
type: EnsemblDatabaseReference

IFI27
type: EnsemblDatabaseReference

MAFF
type: EnsemblDatabaseReference

DGKA
type: EnsemblDatabaseReference

PIK3IP1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1865176062431
p value: 0.0483868252917859
refers to: 221756_at
refers to: PIK3IP1
t statistic: -3.36145468926082

PTP4A1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0663384961395
p value: 0.0320837738301804
refers to: 200731_s_at
refers to: PTP4A1
t statistic: -4.47982128061406

214710_s_at
type: EFO_0005072
part of: A-AFFY-33

DENND2D
type: EnsemblDatabaseReference

PCNA
type: EnsemblDatabaseReference

IFIT3 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.46368547289991
p value: 0.0442242503237879
refers to: IFIT3
refers to: 204747_at
t statistic: 4.31812773233389

NR3C2
type: EnsemblDatabaseReference

IRF7
type: EnsemblDatabaseReference

205898_at
type: EFO_0005072
part of: A-AFFY-33

CDK1
type: EnsemblDatabaseReference

SLC27A2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02088271121092
p value: 0.0410334146849221
refers to: SLC27A2
refers to: 205769_at
t statistic: 3.54311433429532

MELK
type: EnsemblDatabaseReference

204747_at
type: EFO_0005072
part of: A-AFFY-33

DENND2D
type: EnsemblDatabaseReference

PLEKHB1
type: EnsemblDatabaseReference

CGRRF1
type: EnsemblDatabaseReference

208899_x_at
type: EFO_0005072
part of: A-AFFY-33

TOP2A UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.86724809923108
p value: 0.0102939653878772
refers to: TOP2A
refers to: 201292_at
t statistic: 5.9969888945003

212330_at
type: EFO_0005072
part of: A-AFFY-33

SUCLA2
type: EnsemblDatabaseReference

203708_at
type: EFO_0005072
part of: A-AFFY-33

209020_at
type: EFO_0005072
part of: A-AFFY-33

208965_s_at
type: EFO_0005072
part of: A-AFFY-33

PLSCR1 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.65947037429237
p value: 0.0140610671507903
refers to: PLSCR1
refers to: 202430_s_at
t statistic: 5.31600594301258

CCNA2
type: EnsemblDatabaseReference

218723_s_at
type: EFO_0005072
part of: A-AFFY-33

218115_at
type: EFO_0005072
part of: A-AFFY-33

PER1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.12479875490828
p value: 0.0143450929097639
refers to: PER1
refers to: 202861_at
t statistic: -5.28318695779901

XAF1 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.19531634622619
p value: 0.0375853443769621
refers to: XAF1
refers to: 206133_at
t statistic: 4.15287359941042

MX1 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.01216377825994
p value: 0.0107841010583374
refers to: 202086_at
refers to: MX1
t statistic: 6.26347984518678

OAS1 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.37962065389451
p value: 0.00349951608593526
refers to: OAS1
refers to: 202869_at
t statistic: 7.68155823624991

202107_s_at
type: EFO_0005072
part of: A-AFFY-33

CASP7 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.10381035633563
p value: 0.0253194577160678
refers to: 207181_s_at
refers to: CASP7
t statistic: 4.19617273465531

204768_s_at
type: EFO_0005072
part of: A-AFFY-33

ATP6V1D UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.12704227156588
p value: 0.0102939653878772
refers to: 208899_x_at
refers to: ATP6V1D
t statistic: 6.12739755515552

TYMP UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.35069292223933
p value: 0.00942926231848997
refers to: TYMP
refers to: 217497_at
t statistic: 6.54693743932758

MX1 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.97881320566318
p value: 0.00158827538516818
refers to: 202086_at
refers to: MX1
t statistic: 8.01850079222452

WHSC1
type: EnsemblDatabaseReference

SMAD7 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09934374125948
p value: 0.0247769649365411
refers to: SMAD7
refers to: 204790_at
t statistic: -4.92233827987281

PLEKHB1
type: EnsemblDatabaseReference

CGRRF1
type: EnsemblDatabaseReference

CDK1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.19957824942207
p value: 0.0205552186283289
refers to: CDK1
refers to: 203214_x_at
t statistic: 4.55583542140352

201291_s_at
type: EFO_0005072
part of: A-AFFY-33

GIMAP4 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.21724047532902
p value: 0.00900113447107554
refers to: GIMAP4
refers to: 219243_at
t statistic: 6.40744741401613

BTG2 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0176780126004
p value: 0.0141633867211677
refers to: BTG2
refers to: 201235_s_at
t statistic: -5.29664972494856

RBM38
type: EnsemblDatabaseReference

CCNA2
type: EnsemblDatabaseReference

OASL
type: EnsemblDatabaseReference

201169_s_at
type: EFO_0005072
part of: A-AFFY-33

204415_at
type: EFO_0005072
part of: A-AFFY-33

NUSAP1
type: EnsemblDatabaseReference

213008_at
type: EFO_0005072
part of: A-AFFY-33

216248_s_at
type: EFO_0005072
part of: A-AFFY-33

204605_at
type: EFO_0005072
part of: A-AFFY-33

RBM38
type: EnsemblDatabaseReference

STAT1
type: EnsemblDatabaseReference

202446_s_at
type: EFO_0005072
part of: A-AFFY-33

(Factor value) DISEASE/uninfected
type: EFO_0001460
property type: DISEASE
property value: uninfected

204958_at
type: EFO_0005072
part of: A-AFFY-33

PRDX3 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.83766557762601
p value: 0.00617947320875934
refers to: PRDX3
refers to: 201619_at
t statistic: 7.36608037926986

APBA2
type: EnsemblDatabaseReference

IFI27 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.2263124350817
p value: 0.0112648860691265
refers to: IFI27
refers to: 202411_at
t statistic: 5.97789370940701

RFC4 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.01156876599464
p value: 0.0261620524057488
refers to: RFC4
refers to: 204023_at
t statistic: 4.13866250209649

GINS2
type: EnsemblDatabaseReference

207651_at
type: EFO_0005072
part of: A-AFFY-33

RAD51AP1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.07317078242358
p value: 0.0398519856582622
refers to: RAD51AP1
refers to: 204146_at
t statistic: 3.58360050805707

SGK1
type: EnsemblDatabaseReference

LAG3
type: EnsemblDatabaseReference

STAT1
type: EnsemblDatabaseReference

217478_s_at
type: EFO_0005072
part of: A-AFFY-33

APBA2
type: EnsemblDatabaseReference

RSAD2 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.8131079788504
p value: 0.0106065063539481
refers to: RSAD2
refers to: 213797_at
t statistic: 5.61802914510916

RNF130 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02040565087458
p value: 0.00632164896157296
refers to: RNF130
refers to: 217865_at
t statistic: -7.15219466960442

GINS2
type: EnsemblDatabaseReference

HLA-DRA
type: EnsemblDatabaseReference

CBX7 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05480655381552
p value: 0.0298008316102748
refers to: CBX7
refers to: 212914_at
t statistic: -3.9554217387601

PRKCA
type: EnsemblDatabaseReference

MRPL13
type: EnsemblDatabaseReference

SGK1
type: EnsemblDatabaseReference

Analysis of 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: MicroarrayDifferentialExpressionAnalysis

CCNA2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.32344872085163
p value: 0.0216583148360468
refers to: CCNA2
refers to: 213226_at
t statistic: 4.4825089048018

FBXO5 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.24201048194419
p value: 0.0298406809046054
refers to: FBXO5
refers to: 218875_s_at
t statistic: 3.94958583675648

PER1
type: EnsemblDatabaseReference

AOAH
type: EnsemblDatabaseReference

RFC4
type: EnsemblDatabaseReference

HERC5
type: EnsemblDatabaseReference

TYMP
type: EnsemblDatabaseReference

209871_s_at
type: EFO_0005072
part of: A-AFFY-33

HLA-DRA
type: EnsemblDatabaseReference

218585_s_at
type: EFO_0005072
part of: A-AFFY-33

FBXO5
type: EnsemblDatabaseReference

PRKCA
type: EnsemblDatabaseReference

MRPL13
type: EnsemblDatabaseReference

203628_at
type: EFO_0005072
part of: A-AFFY-33

RSAD2 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.8165752077006
p value: 0.0396516503495765
refers to: 213797_at
refers to: RSAD2
t statistic: 4.15613843403106

218986_s_at
type: EFO_0005072
part of: A-AFFY-33

201925_s_at
type: EFO_0005072
part of: A-AFFY-33

BACH2 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.30097050690753
p value: 0.0285665002140198
refers to: BACH2
refers to: 221234_s_at
t statistic: -4.69621113660475

TTC3 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07667836229519
p value: 0.0220466691125922
refers to: TTC3
refers to: 210645_s_at
t statistic: -4.41217977042042

IL6ST
type: EnsemblDatabaseReference

TYMP
type: EnsemblDatabaseReference

NR4A2 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.78565522070697
p value: 0.0249809505194355
refers to: 204621_s_at
refers to: NR4A2
t statistic: -4.22726082745839

FBXO5
type: EnsemblDatabaseReference

PLK3
type: EnsemblDatabaseReference

212430_at
type: EFO_0005072
part of: A-AFFY-33

IL6ST DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09989037004011
p value: 0.0298008316102748
refers to: IL6ST
refers to: 212196_at
t statistic: -3.95745086213949

205239_at
type: EFO_0005072
part of: A-AFFY-33

SLC25A20
type: EnsemblDatabaseReference

SORL1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.15947055440939
p value: 0.00584957967003136
refers to: SORL1
refers to: 212560_at
t statistic: -7.46053500088025

OAS2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.41617823826165
p value: 0.0129485933556089
refers to: 204972_at
refers to: OAS2
t statistic: 5.48449438771273

LEF1
type: EnsemblDatabaseReference

204972_at
type: EFO_0005072
part of: A-AFFY-33

TSC22D2 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.22828151281345
p value: 0.0109042038143428
refers to: TSC22D2
refers to: 204094_s_at
t statistic: -5.89888205470703

CD24
type: EnsemblDatabaseReference

204023_at
type: EFO_0005072
part of: A-AFFY-33

PLK3
type: EnsemblDatabaseReference

214743_at
type: EFO_0005072
part of: A-AFFY-33

SYPL1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01386184079181
p value: 0.010194151581556
refers to: SYPL1
refers to: 201259_s_at
t statistic: -6.32876352708281

ACOT7 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.11369579528633
p value: 0.0251388145878778
refers to: ACOT7
refers to: 208002_s_at
t statistic: 4.2146284330095

208706_s_at
type: EFO_0005072
part of: A-AFFY-33

ZNF331
type: EnsemblDatabaseReference

206648_at
type: EFO_0005072
part of: A-AFFY-33

PRDX3
type: EnsemblDatabaseReference

210317_s_at
type: EFO_0005072
part of: A-AFFY-33

IFRD1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08624764120277
p value: 0.0144400892444402
refers to: 202147_s_at
refers to: IFRD1
t statistic: -5.6831008108819

LYST
type: EnsemblDatabaseReference

MCM7 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.07269059441264
p value: 0.0378534632836649
refers to: 210983_s_at
refers to: MCM7
t statistic: 3.66480383088749

PTCH1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.16766184490289
p value: 0.0170951185718774
refers to: PTCH1
refers to: 209815_at
t statistic: -4.90461075791552

CD55
type: EnsemblDatabaseReference

DDX60 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.51696883712147
p value: 0.00393695322613059
refers to: DDX60
refers to: 218986_s_at
t statistic: 6.82421940126808

ZNF331
type: EnsemblDatabaseReference

ZNF571
type: EnsemblDatabaseReference

SPATS2L UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.37263562879811
p value: 0.0104576834959935
refers to: 222154_s_at
refers to: SPATS2L
t statistic: 5.6793442452162

207165_at
type: EFO_0005072
part of: A-AFFY-33

GADD45B
type: EnsemblDatabaseReference

LYST
type: EnsemblDatabaseReference

221675_s_at
type: EFO_0005072
part of: A-AFFY-33

CD55
type: EnsemblDatabaseReference

PTTG1
type: EnsemblDatabaseReference

SH2D1A UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.28696703085067
p value: 0.0114592080758192
refers to: SH2D1A
refers to: 211210_x_at
t statistic: 5.67723417095559

MAD2L1
type: EnsemblDatabaseReference

GADD45B
type: EnsemblDatabaseReference

(Factor value) DISEASE/chronic HIV infection
type: EFO_0000764
property type: DISEASE
property value: chronic HIV infection

FAM13A UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00440422648327
p value: 0.037057899680201
refers to: 202972_s_at
refers to: FAM13A
t statistic: 4.50191643212144

JMJD6
type: EnsemblDatabaseReference

218741_at
type: EFO_0005072
part of: A-AFFY-33

219049_at
type: EFO_0005072
part of: A-AFFY-33

PLSCR1 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.74457560662196
p value: 0.00258337256438626
refers to: PLSCR1
refers to: 202446_s_at
t statistic: 7.39252279194685

SMAD7 DOWN in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -2.45600549935315
p value: 0.00357361119461003
refers to: SMAD7
refers to: 204790_at
t statistic: -7.50929971084488

203751_x_at
type: EFO_0005072
part of: A-AFFY-33

ZSCAN18 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.17711732625577
p value: 0.0107841010583374
refers to: ZSCAN18
refers to: 218312_s_at
t statistic: -6.23206991716406

213007_at
type: EFO_0005072
part of: A-AFFY-33

KLF11
type: EnsemblDatabaseReference

ZBTB18 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.5462919041229
p value: 0.0346517912735186
refers to: ZBTB18
refers to: 212774_at
t statistic: -4.37851313321131

DEFA4 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.03439953266784
p value: 0.0117566574402258
refers to: DEFA4
refers to: 207269_at
t statistic: 5.51768566146929

CRY1
type: EnsemblDatabaseReference

201930_at
type: EFO_0005072
part of: A-AFFY-33

209504_s_at
type: EFO_0005072
part of: A-AFFY-33

222037_at
type: EFO_0005072
part of: A-AFFY-33

213797_at
type: EFO_0005072
part of: A-AFFY-33

221521_s_at
type: EFO_0005072
part of: A-AFFY-33

PIK3IP1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.22041437327795
p value: 0.010194151581556
refers to: 221757_at
refers to: PIK3IP1
t statistic: -6.37655525403312

MAD2L1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.05725788063295
p value: 0.0220466691125922
refers to: 203362_s_at
refers to: MAD2L1
t statistic: 4.42586414708968

EIF2AK2 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.59121029536722
p value: 0.00158827538516818
refers to: EIF2AK2
refers to: 213294_at
t statistic: 8.12821296884432

KLF11
type: EnsemblDatabaseReference

CRY1
type: EnsemblDatabaseReference

207840_at
type: EFO_0005072
part of: A-AFFY-33

TOP2A
type: EnsemblDatabaseReference

MRPL15
type: EnsemblDatabaseReference

CENPU UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.75502915387189
p value: 0.0302052856429364
refers to: 218883_s_at
refers to: CENPU
t statistic: 3.9344280294697

210354_at
type: EFO_0005072
part of: A-AFFY-33

204825_at
type: EFO_0005072
part of: A-AFFY-33

PLP2 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09803440515157
p value: 0.0186332395239375
refers to: PLP2
refers to: 201136_at
t statistic: -4.68927947220782

EZH2
type: EnsemblDatabaseReference

202464_s_at
type: EFO_0005072
part of: A-AFFY-33

SMC4 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.51953302426862
p value: 0.0147223426462775
refers to: 201664_at
refers to: SMC4
t statistic: 5.21485197024558

NME4
type: EnsemblDatabaseReference

TOP2A
type: EnsemblDatabaseReference

NUSAP1 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.15497269138491
p value: 0.0435451811534299
refers to: NUSAP1
refers to: 218039_at
t statistic: 4.00601948376571

NAA16
type: EnsemblDatabaseReference

(Assay) Human Uninfected Sample N141-CD8+ T cells
type: Assay
identifier: Human Uninfected Sample N141-CD8+ T cells
has participant: A-AFFY-33

AIM2
type: EnsemblDatabaseReference

209305_s_at
type: EFO_0005072
part of: A-AFFY-33

CCR7
type: EnsemblDatabaseReference

NME4
type: EnsemblDatabaseReference

SLAMF7 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02990257299702
p value: 0.0283298763634122
refers to: SLAMF7
refers to: 219159_s_at
t statistic: 4.02881561264813

IFI44L UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 3.93433747900416
p value: 4.51451780232215E-4
refers to: 204439_at
refers to: IFI44L
t statistic: 10.6681140060869

CD55 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06837952444901
p value: 0.0350289033762347
refers to: CD55
refers to: 201926_s_at
t statistic: -4.35961351608043

216237_s_at
type: EFO_0005072
part of: A-AFFY-33

NAA16
type: EnsemblDatabaseReference

CAND1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.10493907334945
p value: 0.0449427433983053
refers to: CAND1
refers to: 208839_s_at
t statistic: 3.44157081209982

RP11-553L6.5 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05318911177339
p value: 0.0392281575170842
refers to: RP11-553L6.5
refers to: 213158_at
t statistic: -3.6174547418797

MCM4 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2384869774443
p value: 0.0441294463093396
refers to: MCM4
refers to: 212141_at
t statistic: 3.46364928662616

202411_at
type: EFO_0005072
part of: A-AFFY-33

212592_at
type: EFO_0005072
part of: A-AFFY-33

(Sample) disease/chronic HIV infection
type: EFO_0000764
property type: disease
property value: chronic HIV infection

CCR7
type: EnsemblDatabaseReference

214453_s_at
type: EFO_0005072
part of: A-AFFY-33

IRS2 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.85591145374973
p value: 0.0245264157961503
refers to: IRS2
refers to: 209184_s_at
t statistic: -4.25855665970852

203658_at
type: EFO_0005072
part of: A-AFFY-33

211302_s_at
type: EFO_0005072
part of: A-AFFY-33

ITGA6
type: EnsemblDatabaseReference

Analysis of 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: MicroarrayDifferentialExpressionAnalysis

HERC6 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.31936843243709
p value: 0.0112648860691265
refers to: HERC6
refers to: 219352_at
t statistic: 6.07109852703489

CDKN1A
type: EnsemblDatabaseReference

OSER1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03081357137662
p value: 0.0340079952530261
refers to: 209020_at
refers to: OSER1
t statistic: -3.78910926345003

205692_s_at
type: EFO_0005072
part of: A-AFFY-33

212023_s_at
type: EFO_0005072
part of: A-AFFY-33

NCBP1
type: EnsemblDatabaseReference

TYMS
type: EnsemblDatabaseReference

AFFX-HUMISGF3A/M97935_5_at
type: EFO_0005072
part of: A-AFFY-33

MX1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.47279407839456
p value: 0.00275878421956647
refers to: 202086_at
refers to: MX1
t statistic: 8.92220366482885

SPATS2L
type: EnsemblDatabaseReference

ITGA6
type: EnsemblDatabaseReference

MCM7
type: EnsemblDatabaseReference

202095_s_at
type: EFO_0005072
part of: A-AFFY-33

CDKN1A
type: EnsemblDatabaseReference

NRIP1
type: EnsemblDatabaseReference

PYCARD UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02788386530476
p value: 0.0101981986139502
refers to: 221666_s_at
refers to: PYCARD
t statistic: 6.19107556543899

LEF1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01226076364828
p value: 0.0281927329809344
refers to: LEF1
refers to: 221558_s_at
t statistic: -4.72445531733949

TYMS
type: EnsemblDatabaseReference

SPATS2L
type: EnsemblDatabaseReference

IFI44L UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 3.40048224903799
p value: 5.77062686605494E-4
refers to: IFI44L
refers to: 204439_at
t statistic: 11.8731955380341

219588_s_at
type: EFO_0005072
part of: A-AFFY-33

201235_s_at
type: EFO_0005072
part of: A-AFFY-33

PSMB2
type: EnsemblDatabaseReference

OAS3
type: EnsemblDatabaseReference

KIF15
type: EnsemblDatabaseReference

IER5 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00345889028777
p value: 0.0497070724871594
refers to: IER5
refers to: 218611_at
t statistic: -3.32974801788308

ZBTB18
type: EnsemblDatabaseReference

MKI67 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.19559625068573
p value: 0.0219951515093584
refers to: MKI67
refers to: 212020_s_at
t statistic: 4.43993500809748

202016_at
type: EFO_0005072
part of: A-AFFY-33

PLSCR1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.38570319226183
p value: 0.0312694319346491
refers to: PLSCR1
refers to: 202430_s_at
t statistic: 3.89296019269105

PSMB2
type: EnsemblDatabaseReference

OAS3
type: EnsemblDatabaseReference

HLA-DMA
type: EnsemblDatabaseReference

203358_s_at
type: EFO_0005072
part of: A-AFFY-33

OAS1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.66432411261248
p value: 0.00648341473125237
refers to: 202869_at
refers to: OAS1
t statistic: 6.97463609837752

RSAD2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.3766793793883
p value: 0.0122468675207315
refers to: 213797_at
refers to: RSAD2
t statistic: 5.5780985235532

209969_s_at
type: EFO_0005072
part of: A-AFFY-33

218312_s_at
type: EFO_0005072
part of: A-AFFY-33

LGALS9
type: EnsemblDatabaseReference

214329_x_at
type: EFO_0005072
part of: A-AFFY-33

ASF1B UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00870184442698
p value: 0.0233732714107097
refers to: 218115_at
refers to: ASF1B
t statistic: 4.31481984201666

(Assay) Human Acute HIV Sample A051-CD4+ T cells
type: Assay
identifier: Human Acute HIV Sample A051-CD4+ T cells
has participant: A-AFFY-33

ASPM UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.29164193816255
p value: 0.0249969017110179
refers to: ASPM
refers to: 219918_s_at
t statistic: 4.22581121874085

SYPL1
type: EnsemblDatabaseReference

HLA-DMA
type: EnsemblDatabaseReference

TNFSF10 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.50211459246525
p value: 0.0113571358120562
refers to: TNFSF10
refers to: 202687_s_at
t statistic: 5.87641577137175

LGALS9
type: EnsemblDatabaseReference

HSPA1A UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.19204977673719
p value: 0.0206799163843893
refers to: HSPA1A
refers to: 200799_at
t statistic: 4.85689234702365

HERC5 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.20752325376374
p value: 0.00218500040011149
refers to: HERC5
refers to: 219863_at
t statistic: 8.55502017573241

213294_at
type: EFO_0005072
part of: A-AFFY-33

MLXIP
type: EnsemblDatabaseReference

SYPL1
type: EnsemblDatabaseReference

RP11-553L6.5
type: EnsemblDatabaseReference

CRY1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04621588210046
p value: 0.0480535778852958
refers to: 209674_at
refers to: CRY1
t statistic: -3.87240358766032

211272_s_at
type: EFO_0005072
part of: A-AFFY-33

DLGAP5
type: EnsemblDatabaseReference

204444_at
type: EFO_0005072
part of: A-AFFY-33

203605_at
type: EFO_0005072
part of: A-AFFY-33

204170_s_at
type: EFO_0005072
part of: A-AFFY-33

NT5E DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.16923538264025
p value: 0.0310665469855087
refers to: NT5E
refers to: 203939_at
t statistic: -3.90452925504424

S100A8
type: EnsemblDatabaseReference

MLXIP
type: EnsemblDatabaseReference

IFI16
type: EnsemblDatabaseReference

222154_s_at
type: EFO_0005072
part of: A-AFFY-33

SLC7A5
type: EnsemblDatabaseReference

215177_s_at
type: EFO_0005072
part of: A-AFFY-33

ZWINT
type: EnsemblDatabaseReference

AOAH UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.37756740409317
p value: 0.0494819439640246
refers to: 205639_at
refers to: AOAH
t statistic: 3.83388587458556

GPRASP1
type: EnsemblDatabaseReference

DLGAP5
type: EnsemblDatabaseReference

218236_s_at
type: EFO_0005072
part of: A-AFFY-33

S100A8
type: EnsemblDatabaseReference

205569_at
type: EFO_0005072
part of: A-AFFY-33

KIF11 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.89456244362364
p value: 0.0205552186283289
refers to: KIF11
refers to: 204444_at
t statistic: 4.54744204490919

SLC7A5
type: EnsemblDatabaseReference

203543_s_at
type: EFO_0005072
part of: A-AFFY-33

GPRASP1
type: EnsemblDatabaseReference

LAMP3 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.68999316505586
p value: 0.0138465529220615
refers to: LAMP3
refers to: 205569_at
t statistic: 5.41692395560901

MX1
type: EnsemblDatabaseReference

MXI1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.40269180263026
p value: 0.00648341473125237
refers to: MXI1
refers to: 202364_at
t statistic: -7.06338122726644

EIF2AK2
type: EnsemblDatabaseReference

HMMR
type: EnsemblDatabaseReference

PSMA4
type: EnsemblDatabaseReference

DEFA4
type: EnsemblDatabaseReference

204094_s_at
type: EFO_0005072
part of: A-AFFY-33

(Sample) disease/early HIV infection
type: EFO_0000764
property type: disease
property value: early HIV infection

KLF9 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18616819504467
p value: 0.0133538100481615
refers to: KLF9
refers to: 203543_s_at
t statistic: -5.38359556410579

ACTN1
type: EnsemblDatabaseReference

MX1
type: EnsemblDatabaseReference

EIF2AK2
type: EnsemblDatabaseReference

SC5D
type: EnsemblDatabaseReference

CDC20 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.61431061421886
p value: 0.0189854573239046
refers to: CDC20
refers to: 202870_s_at
t statistic: 4.6526586098881

STMN1
type: EnsemblDatabaseReference

210982_s_at
type: EFO_0005072
part of: A-AFFY-33

LTBP3
type: EnsemblDatabaseReference

203236_s_at
type: EFO_0005072
part of: A-AFFY-33

GPR171
type: EnsemblDatabaseReference

204439_at
type: EFO_0005072
part of: A-AFFY-33

200731_s_at
type: EFO_0005072
part of: A-AFFY-33

PSMA4 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.28272360148668
p value: 0.00648341473125237
refers to: 203396_at
refers to: PSMA4
t statistic: 7.14705958042485

CHI3L2 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.29706127047386
p value: 0.0092828429201456
refers to: 213060_s_at
refers to: CHI3L2
t statistic: 6.60339607036387

PCNA UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.10978093673513
p value: 0.0391849715644273
refers to: PCNA
refers to: 201202_at
t statistic: 3.61897913079349

(Assay) Human Chronic HIV Sample C080-CD8+ T cells
type: Assay
identifier: Human Chronic HIV Sample C080-CD8+ T cells
has participant: A-AFFY-33

E-GEOD-6740
type: microarray 1colour mrna differential
RO_0002162: Homo sapiens
description: We examined the gene expression profiles in ex vivo human CD4+ and CD8+ T cells from untreated HIV-infected individuals at different clinical stages and rates of disease progression. Profiles of pure CD4+ and CD8+ T cells subsets from HIV-infected nonprogressors who controlled viremia were indistinguishable from HIV-uninfected individuals. Similarly, no gene clusters could distinguish T cells from individuals with early from chronic progressive HIV infection, whereas differences were observed between uninfected or nonprogressors versus early or chronic progressors. In early/chronic HIV infection, three characteristic gene expression signatures were observed: (1) CD4+ and CD8+ T cells showed increased expression of interferon stimulated genes (ISGs). However, some ISGs including CXCL9, CXCL10, and CXCL11, and the IL15R? in both CD4+ and CD8+ T cells and the anti-HIV ISG APOBEC3G in CD4+ T cells, were not upregulated. (2) CD4+ and CD8+ T cells showed a cluster similar to that observed in thymocytes, and (3) more genes were differentially regulated in CD8+ T cells than in CD4+ T cells, including a cluster of genes downregulated exclusively in CD8+ T cells. In conclusion, HIV infection induces a persistent T cell transcriptional profile, early in infection, characterized by a dramatic but potentially aberrant interferon response, and a profile suggesting an active thymic output. We studied a cohort of HIV infected individuals with various clinical stages of HIV infection and healthy uninfected volunteers as a control group (Table 1). We included 5 individuals with early HIV infection (A), five with chronic progressive HIV infection (C), five individuals with non-progressive HIV infection with low or undetectable viral loads (L) and five HIV uninfected individuals (N). The HIV infected individuals were never on therapy prior to entering the study. Samples were taken once from each donor.
uses data from: http://identifiers.org/pubmed/17251300

TSC22D2
type: EnsemblDatabaseReference

(Assay) Human Chronic HIV Sample C138-CD4+ T cells
type: Assay
identifier: Human Chronic HIV Sample C138-CD4+ T cells
has participant: A-AFFY-33

219159_s_at
type: EFO_0005072
part of: A-AFFY-33

201755_at
type: EFO_0005072
part of: A-AFFY-33

203344_s_at
type: EFO_0005072
part of: A-AFFY-33

STMN1
type: EnsemblDatabaseReference

LTBP3
type: EnsemblDatabaseReference

SMC4
type: EnsemblDatabaseReference

GPR171
type: EnsemblDatabaseReference

IFI6 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.62681047184331
p value: 0.00312640324429015
refers to: IFI6
refers to: 204415_at
t statistic: 7.07489839645304

(Assay) Human Chronic HIV Sample C062-CD4+ T cells
type: Assay
identifier: Human Chronic HIV Sample C062-CD4+ T cells
has participant: A-AFFY-33

(Factor value) CELL_TYPE/CD4-positive T cell
type: CL_0000084
property type: CELL_TYPE
property value: CD4-positive T cell

CENPF UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.28449167847304
p value: 0.0104503112899665
refers to: 207828_s_at
refers to: CENPF
t statistic: 5.96823224591359

SMC2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.70472443733712
p value: 0.0218914646150961
refers to: SMC2
refers to: 204240_s_at
t statistic: 4.45973863345513

204621_s_at
type: EFO_0005072
part of: A-AFFY-33

BIRC5
type: EnsemblDatabaseReference

TSC22D2
type: EnsemblDatabaseReference

Analysis of 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: MicroarrayDifferentialExpressionAnalysis

KIF11
type: EnsemblDatabaseReference

TNFSF10
type: EnsemblDatabaseReference

MCM6 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.40498482023971
p value: 0.0173836477377635
refers to: 201930_at
refers to: MCM6
t statistic: 4.83066427144338

(Assay) Human Non-progressor HIV Sample L134-CD4+ T cells
type: Assay
identifier: Human Non-progressor HIV Sample L134-CD4+ T cells
has participant: A-AFFY-33

PLEK UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02492491602998
p value: 0.0452374774080116
refers to: PLEK
refers to: 203471_s_at
t statistic: 3.43481556667144

SMC4
type: EnsemblDatabaseReference

209417_s_at
type: EFO_0005072
part of: A-AFFY-33

(Sample) disease/non-progressive HIV infection
type: EFO_0000764
property type: disease
property value: non-progressive HIV infection

KLF11 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.43846538757395
p value: 0.00648341473125237
refers to: KLF11
refers to: 218486_at
t statistic: -7.17693954112698

CCR5 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.33102937189439
p value: 0.0370843398009073
refers to: 206991_s_at
refers to: CCR5
t statistic: 4.27070908119716

NT5E
type: EnsemblDatabaseReference

201300_s_at
type: EFO_0005072
part of: A-AFFY-33

(Assay) Human Acute HIV Sample A051-CD8+ T cells
type: Assay
identifier: Human Acute HIV Sample A051-CD8+ T cells
has participant: A-AFFY-33

203313_s_at
type: EFO_0005072
part of: A-AFFY-33

CCNB1
type: EnsemblDatabaseReference

PRNP
type: EnsemblDatabaseReference

209815_at
type: EFO_0005072
part of: A-AFFY-33

PLEKHB1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04827161308472
p value: 0.0479553387542909
refers to: 209504_s_at
refers to: PLEKHB1
t statistic: -3.37036347477753

SGK1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.52518496510074
p value: 0.0421685616746595
refers to: 201739_at
refers to: SGK1
t statistic: -3.50648468180915

BIRC5 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.81719215279257
p value: 0.00874987018629956
refers to: BIRC5
refers to: 202095_s_at
t statistic: 6.39716381988866

219684_at
type: EFO_0005072
part of: A-AFFY-33

CD55 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.38300572319267
p value: 0.0252145198380238
refers to: CD55
refers to: 201925_s_at
t statistic: -4.20188599691334

211210_x_at
type: EFO_0005072
part of: A-AFFY-33

PRNP
type: EnsemblDatabaseReference

209185_s_at
type: EFO_0005072
part of: A-AFFY-33

OAS3 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.10522158418953
p value: 0.0460731329950374
refers to: OAS3
refers to: 218400_at
t statistic: 3.93443364489113

202589_at
type: EFO_0005072
part of: A-AFFY-33

CCR5 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.17255145561047
p value: 0.00202228150982195
refers to: CCR5
refers to: 206991_s_at
t statistic: 9.63933599099164

PTTG1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.56062146686702
p value: 0.0109042038143428
refers to: PTTG1
refers to: 203554_x_at
t statistic: 5.85914963136491

ASF1B
type: EnsemblDatabaseReference

BEX4
type: EnsemblDatabaseReference

ISG15 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.28796795244792
p value: 0.00199604638398305
refers to: ISG15
refers to: 205483_s_at
t statistic: 7.70669842812982

TTC3
type: EnsemblDatabaseReference

CASP1
type: EnsemblDatabaseReference

FAM13A
type: EnsemblDatabaseReference

HLA-DRA UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.84823682267929
p value: 0.0313324774486624
refers to: 208894_at
refers to: HLA-DRA
t statistic: 3.89099721876905

219978_s_at
type: EFO_0005072
part of: A-AFFY-33

NUSAP1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.69573277426388
p value: 0.0102939653878772
refers to: NUSAP1
refers to: 218039_at
t statistic: 6.02557551839521

ASF1B
type: EnsemblDatabaseReference

202917_s_at
type: EFO_0005072
part of: A-AFFY-33

GTF2H1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.09509426275094
p value: 0.0159198556559643
refers to: GTF2H1
refers to: 202451_at
t statistic: 5.02875877088941

(Assay) Human Uninfected Sample N001-CD8+ T cells
type: Assay
identifier: Human Uninfected Sample N001-CD8+ T cells
has participant: A-AFFY-33

BEX4
type: EnsemblDatabaseReference

200732_s_at
type: EFO_0005072
part of: A-AFFY-33

TTC3
type: EnsemblDatabaseReference

ZBTB10
type: EnsemblDatabaseReference

NDC80 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.26387550181607
p value: 0.0129830318664674
refers to: NDC80
refers to: 204162_at
t statistic: 5.46183490090028

209156_s_at
type: EFO_0005072
part of: A-AFFY-33

PRKCA DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21903561058183
p value: 0.0419067940356159
refers to: 213093_at
refers to: PRKCA
t statistic: -3.51491739792866

IGF1R DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07411846984507
p value: 0.0342118492491731
refers to: 203628_at
refers to: IGF1R
t statistic: -3.77946059515674

RAD51AP1
type: EnsemblDatabaseReference

GADD45A
type: EnsemblDatabaseReference

ZBTB10
type: EnsemblDatabaseReference

CUX1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09731102564108
p value: 0.0150714822881324
refers to: CUX1
refers to: 214743_at
t statistic: -5.17375895050669

SNN DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.67139791578222
p value: 0.0298742988744095
refers to: SNN
refers to: 218032_at
t statistic: -3.9478858165373

202284_s_at
type: EFO_0005072
part of: A-AFFY-33

PRKCA DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.32355556496822
p value: 0.0309533059198395
refers to: PRKCA
refers to: 213093_at
t statistic: -4.54556122641699

218532_s_at
type: EFO_0005072
part of: A-AFFY-33

(Assay) Human Non-progressor HIV Sample L004-CD4+ T cells
type: Assay
identifier: Human Non-progressor HIV Sample L004-CD4+ T cells
has participant: A-AFFY-33

RAD51AP1
type: EnsemblDatabaseReference

GADD45A
type: EnsemblDatabaseReference

HERC6 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.58258383961539
p value: 0.00582118667460781
refers to: HERC6
refers to: 219352_at
t statistic: 6.29111882790901

218009_s_at
type: EFO_0005072
part of: A-AFFY-33

MAFF DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.75311699162507
p value: 0.0155714764284244
refers to: 36711_at
refers to: MAFF
t statistic: -5.10471871074807

KIAA0101 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 3.07466507509922
p value: 0.00202228150982195
refers to: KIAA0101
refers to: 202503_s_at
t statistic: 9.74871968395922

(Sample) sex/male
type: EFO_0001266
property type: sex
property value: male

IFI44 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.77994296491618
p value: 0.0107841010583374
refers to: 214453_s_at
refers to: IFI44
t statistic: 6.18399281534076

DDX60 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17067458563933
p value: 0.0264362308792612
refers to: DDX60
refers to: 218986_s_at
t statistic: 4.80907656283552

CLDND1 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.27527240606055
p value: 0.00708016996076999
refers to: 208925_at
refers to: CLDND1
t statistic: 6.72333919692474

MELK UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.58080470397361
p value: 0.0151844563840345
refers to: MELK
refers to: 204825_at
t statistic: 5.1473859609592

GPRASP1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1272968629452
p value: 0.0382606463460408
refers to: 204793_at
refers to: GPRASP1
t statistic: -4.22867619261704

BTG2 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.17245986807332
p value: 0.030053584974324
refers to: 201235_s_at
refers to: BTG2
t statistic: -4.59547562232596

GNAQ DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.22334184132384
p value: 0.0464527376788306
refers to: GNAQ
refers to: 202615_at
t statistic: -3.40439996776341

202147_s_at
type: EFO_0005072
part of: A-AFFY-33

206102_at
type: EFO_0005072
part of: A-AFFY-33

PLSCR1 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.06409086506825
p value: 0.0156306529188147
refers to: PLSCR1
refers to: 202446_s_at
t statistic: 5.24426552759234

HLA-DMA UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.16997937944522
p value: 0.036024527808798
refers to: 217478_s_at
refers to: HLA-DMA
t statistic: 3.71676642858947

ZSCAN18
type: EnsemblDatabaseReference

STAT1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.12030940442656
p value: 0.0353438354215254
refers to: STAT1
refers to: AFFX-HUMISGF3A/M97935_5_at
t statistic: 3.74345289150256

C6orf211 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4215353084184
p value: 0.0102939653878772
refers to: 218195_at
refers to: C6orf211
t statistic: 6.03175710923154

205267_at
type: EFO_0005072
part of: A-AFFY-33

HERC6
type: EnsemblDatabaseReference

CUX1
type: EnsemblDatabaseReference

211211_x_at
type: EFO_0005072
part of: A-AFFY-33

IFNGR1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06997160319291
p value: 0.0402857948009957
refers to: IFNGR1
refers to: 211676_s_at
t statistic: -4.11450190781829

SOX4
type: EnsemblDatabaseReference

219918_s_at
type: EFO_0005072
part of: A-AFFY-33

RGCC DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -2.05571336304046
p value: 0.0400325776288848
refers to: RGCC
refers to: 218723_s_at
t statistic: -3.57281428347052

GADD45B DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08039375829791
p value: 0.0261571302063321
refers to: GADD45B
refers to: 209305_s_at
t statistic: -4.1416351096764

206133_at
type: EFO_0005072
part of: A-AFFY-33

LYZ DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.59885276752767
p value: 0.0220466691125922
refers to: 213975_s_at
refers to: LYZ
t statistic: -4.43303356481186

HN1
type: EnsemblDatabaseReference

206486_at
type: EFO_0005072
part of: A-AFFY-33

FEN1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.15957403839807
p value: 0.0310991878923593
refers to: FEN1
refers to: 204767_s_at
t statistic: 3.90071748915955

219378_at
type: EFO_0005072
part of: A-AFFY-33

(Assay) Human Non-progressor HIV Sample L128-CD4+ T cells
type: Assay
identifier: Human Non-progressor HIV Sample L128-CD4+ T cells
has participant: A-AFFY-33

GPR171 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.24538686707616
p value: 0.0123656593638756
refers to: 207651_at
refers to: GPR171
t statistic: 5.71761222535924

SOX4
type: EnsemblDatabaseReference

(Assay) Human Acute HIV Sample A044-CD8+ T cells
type: Assay
identifier: Human Acute HIV Sample A044-CD8+ T cells
has participant: A-AFFY-33

206513_at
type: EFO_0005072
part of: A-AFFY-33

218027_at
type: EFO_0005072
part of: A-AFFY-33

203362_s_at
type: EFO_0005072
part of: A-AFFY-33

205488_at
type: EFO_0005072
part of: A-AFFY-33

FANCI UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.27506234434121
p value: 0.0200922098211571
refers to: FANCI
refers to: 213008_at
t statistic: 4.5822420246216

HN1
type: EnsemblDatabaseReference

MYL6B
type: EnsemblDatabaseReference

AREG
type: EnsemblDatabaseReference

FXYD5
type: EnsemblDatabaseReference

(Assay) Human Uninfected Sample N141-CD4+ T cells
type: Assay
identifier: Human Uninfected Sample N141-CD4+ T cells
has participant: A-AFFY-33

208436_s_at
type: EFO_0005072
part of: A-AFFY-33

ZNF395
type: EnsemblDatabaseReference

216705_s_at
type: EFO_0005072
part of: A-AFFY-33

OAS2
type: EnsemblDatabaseReference

202870_s_at
type: EFO_0005072
part of: A-AFFY-33

IFI44
type: EnsemblDatabaseReference

XAF1
type: EnsemblDatabaseReference

SMC2
type: EnsemblDatabaseReference

203396_at
type: EFO_0005072
part of: A-AFFY-33

SKIL
type: EnsemblDatabaseReference

NAP1L3 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.40387025164172
p value: 0.012060304282599
refers to: 204749_at
refers to: NAP1L3
t statistic: -5.60270178734943

MYL6B
type: EnsemblDatabaseReference

218149_s_at
type: EFO_0005072
part of: A-AFFY-33

205483_s_at
type: EFO_0005072
part of: A-AFFY-33

IFI44L
type: EnsemblDatabaseReference

ZNF395
type: EnsemblDatabaseReference

TRAV13-1
type: EnsemblDatabaseReference

OAS2
type: EnsemblDatabaseReference

GBP1
type: EnsemblDatabaseReference

XAF1
type: EnsemblDatabaseReference

SNN
type: EnsemblDatabaseReference

217591_at
type: EFO_0005072
part of: A-AFFY-33

203413_at
type: EFO_0005072
part of: A-AFFY-33

PTP4A1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00385974939061
p value: 0.00704076947403848
refers to: 200730_s_at
refers to: PTP4A1
t statistic: -6.79433236321614

214470_at
type: EFO_0005072
part of: A-AFFY-33

219863_at
type: EFO_0005072
part of: A-AFFY-33

217497_at
type: EFO_0005072
part of: A-AFFY-33

TRAV13-1
type: EnsemblDatabaseReference

GBP1
type: EnsemblDatabaseReference

MKI67 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.11593220247702
p value: 0.0275638253060555
refers to: 212021_s_at
refers to: MKI67
t statistic: 4.08137037830986

SNN
type: EnsemblDatabaseReference

201739_at
type: EFO_0005072
part of: A-AFFY-33

206991_s_at
type: EFO_0005072
part of: A-AFFY-33

NT5E DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14537144964415
p value: 0.0316200190855764
refers to: 203939_at
refers to: NT5E
t statistic: -4.51013413682757

222036_s_at
type: EFO_0005072
part of: A-AFFY-33

203509_at
type: EFO_0005072
part of: A-AFFY-33

SKIL DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.23092135508903
p value: 0.0129485933556089
refers to: SKIL
refers to: 217591_at
t statistic: -5.48928219639347

LGALS9 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.25812077518966
p value: 0.0109042038143428
refers to: LGALS9
refers to: 203236_s_at
t statistic: 5.88179086508732

201417_at
type: EFO_0005072
part of: A-AFFY-33

NUP43
type: EnsemblDatabaseReference

RRM2 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.25234771781468
p value: 9.6606851378736E-4
refers to: RRM2
refers to: 201890_at
t statistic: 10.0464092419874

(Assay) Human Non-progressor HIV Sample L128-CD8+ T cells
type: Assay
identifier: Human Non-progressor HIV Sample L128-CD8+ T cells
has participant: A-AFFY-33

(Assay) Human Acute HIV Sample A064-CD8+ T cells
type: Assay
identifier: Human Acute HIV Sample A064-CD8+ T cells
has participant: A-AFFY-33

KLRF1
type: EnsemblDatabaseReference

(Assay) Human Non-progressor HIV Sample L015-CD8+ T cells
type: Assay
identifier: Human Non-progressor HIV Sample L015-CD8+ T cells
has participant: A-AFFY-33

ISG15 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.44071023876614
p value: 0.0168556838971003
refers to: ISG15
refers to: 205483_s_at
t statistic: 5.10409638037148

OAS1
type: EnsemblDatabaseReference

IFI16 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.23744290742974
p value: 0.00360210608157664
refers to: IFI16
refers to: 208966_x_at
t statistic: 8.20242345522661

CLDND1
type: EnsemblDatabaseReference

LYZ
type: EnsemblDatabaseReference

TPX2
type: EnsemblDatabaseReference

201195_s_at
type: EFO_0005072
part of: A-AFFY-33

CENPU
type: EnsemblDatabaseReference

ZFP36L2 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18259829268742
p value: 0.0233325967024865
refers to: 201367_s_at
refers to: ZFP36L2
t statistic: -5.04615673822724

MCM2
type: EnsemblDatabaseReference

SP140
type: EnsemblDatabaseReference

CLDND1
type: EnsemblDatabaseReference

203153_at
type: EFO_0005072
part of: A-AFFY-33

LYZ
type: EnsemblDatabaseReference

IFI16 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.517318404863
p value: 0.0173836477377635
refers to: 208965_s_at
refers to: IFI16
t statistic: 4.85257736782715

GZMA UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.15697232343118
p value: 0.0246283454765866
refers to: GZMA
refers to: 205488_at
t statistic: 4.25321660469693

STAT1 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.72479817229713
p value: 0.0320473722871245
refers to: 209969_s_at
refers to: STAT1
t statistic: 4.33315174908808

STAT1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.15489764345109
p value: 0.0219951515093584
refers to: STAT1
refers to: AFFX-HUMISGF3A/M97935_MA_at
t statistic: 4.43781868488897

204749_at
type: EFO_0005072
part of: A-AFFY-33

IFIT1
type: EnsemblDatabaseReference

CKS2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2622423041661
p value: 0.0250810021921307
refers to: 204170_s_at
refers to: CKS2
t statistic: 4.2226748502579

RSAD2
type: EnsemblDatabaseReference

CDKN1A DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03079623518689
p value: 0.0221951709738802
refers to: 202284_s_at
refers to: CDKN1A
t statistic: -5.19619597185326

SP140
type: EnsemblDatabaseReference

203471_s_at
type: EFO_0005072
part of: A-AFFY-33

MKI67 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.03423277066587
p value: 0.0173836477377635
refers to: MKI67
refers to: 212023_s_at
t statistic: 4.84363103411773

GADD45A DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.40941206613337
p value: 0.0162306528064573
refers to: GADD45A
refers to: 203725_at
t statistic: -5.55067695377917

MCM6
type: EnsemblDatabaseReference

KIAA0101
type: EnsemblDatabaseReference

MCM5 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22944891563163
p value: 0.0329304516289308
refers to: MCM5
refers to: 201755_at
t statistic: 3.84339205004521

IFIT1
type: EnsemblDatabaseReference

SORL1
type: EnsemblDatabaseReference

IRS2 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.4186917913591
p value: 0.0395259548791976
refers to: IRS2
refers to: 209185_s_at
t statistic: -4.16744423804352

ZNF91
type: EnsemblDatabaseReference

MEST DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.78046203846128
p value: 0.0127213855793106
refers to: 202016_at
refers to: MEST
t statistic: -5.94057434823595

209714_s_at
type: EFO_0005072
part of: A-AFFY-33

SP140 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02744779239446
p value: 0.0121667364246904
refers to: 207777_s_at
refers to: SP140
t statistic: 5.58728335467378

YWHAE
type: EnsemblDatabaseReference

207777_s_at
type: EFO_0005072
part of: A-AFFY-33

FANCI
type: EnsemblDatabaseReference

OAS1 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.65631667613593
p value: 0.0142944519444007
refers to: 202869_at
refers to: OAS1
t statistic: 5.28051109003421

BHLHE40
type: EnsemblDatabaseReference

MCM6
type: EnsemblDatabaseReference

CHI3L2
type: EnsemblDatabaseReference

LMNB1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.73633434912292
p value: 0.0171738977709529
refers to: 203276_at
refers to: LMNB1
t statistic: 4.87438958427302

202688_at
type: EFO_0005072
part of: A-AFFY-33

IFI35 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.09802423496702
p value: 0.0429938243848117
refers to: IFI35
refers to: 209417_s_at
t statistic: 4.02599429206301

TAP1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.04892120156099
p value: 0.0111723167887286
refers to: TAP1
refers to: 202307_s_at
t statistic: 5.76291567353248

202270_at
type: EFO_0005072
part of: A-AFFY-33

SCML1
type: EnsemblDatabaseReference

218622_at
type: EFO_0005072
part of: A-AFFY-33

CASP7
type: EnsemblDatabaseReference

PDE4B DOWN in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.13491556281896
p value: 0.0279590457292597
refers to: PDE4B
refers to: 211302_s_at
t statistic: -4.48905247526523

FANCI
type: EnsemblDatabaseReference

RBM38 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1629157894946
p value: 0.0488056191759496
refers to: 212430_at
refers to: RBM38
t statistic: -3.34937271511421

CHI3L2
type: EnsemblDatabaseReference

RRM1
type: EnsemblDatabaseReference

SMC1A
type: EnsemblDatabaseReference

SMAD7 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.97816221360283
p value: 0.00360210608157664
refers to: SMAD7
refers to: 204790_at
t statistic: -8.19162235213653

SMAD7
type: EnsemblDatabaseReference

IFNGR1
type: EnsemblDatabaseReference

LMNB1
type: EnsemblDatabaseReference

SCML1
type: EnsemblDatabaseReference

RACGAP1
type: EnsemblDatabaseReference

GINS1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0400881201475
p value: 0.0220466691125922
refers to: 206102_at
refers to: GINS1
t statistic: 4.42818097377118

212774_at
type: EFO_0005072
part of: A-AFFY-33

(Sample) organism part/blood
type: UBERON_0000178
property type: organism part
property value: blood

MEST DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.69953495187723
p value: 0.0140244688282183
refers to: MEST
refers to: 202016_at
t statistic: -5.32559243931763

218597_s_at
type: EFO_0005072
part of: A-AFFY-33

S1PR1
type: EnsemblDatabaseReference

SMAD7
type: EnsemblDatabaseReference

218875_s_at
type: EFO_0005072
part of: A-AFFY-33

IFNGR1
type: EnsemblDatabaseReference

LMNB1
type: EnsemblDatabaseReference

TPX2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.51950649115275
p value: 0.019975624035863
refers to: TPX2
refers to: 210052_s_at
t statistic: 4.59059439259505

RACGAP1
type: EnsemblDatabaseReference

IRF7 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.39264074220096
p value: 0.0247769649365411
refers to: IRF7
refers to: 208436_s_at
t statistic: 4.90083494408721

CISD1
type: EnsemblDatabaseReference

204026_s_at
type: EFO_0005072
part of: A-AFFY-33

CKAP4
type: EnsemblDatabaseReference

IER5
type: EnsemblDatabaseReference

S1PR1
type: EnsemblDatabaseReference

IFNG
type: EnsemblDatabaseReference

200999_s_at
type: EFO_0005072
part of: A-AFFY-33

203518_at
type: EFO_0005072
part of: A-AFFY-33

206374_at
type: EFO_0005072
part of: A-AFFY-33

202861_at
type: EFO_0005072
part of: A-AFFY-33

IER5
type: EnsemblDatabaseReference

SLC2A3
type: EnsemblDatabaseReference

201589_at
type: EFO_0005072
part of: A-AFFY-33

TCEAL4
type: EnsemblDatabaseReference

IFNG
type: EnsemblDatabaseReference

CASP1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.11646678037765
p value: 0.00360210608157664
refers to: CASP1
refers to: 211368_s_at
t statistic: 8.18627123154813

GPR171 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17580068032414
p value: 0.0114592080758192
refers to: 207651_at
refers to: GPR171
t statistic: 5.69345341595726

CENPF
type: EnsemblDatabaseReference

205660_at
type: EFO_0005072
part of: A-AFFY-33

SRP54 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22896416725058
p value: 0.00919272598981396
refers to: SRP54
refers to: 203605_at
t statistic: 6.32805782119077

204240_s_at
type: EFO_0005072
part of: A-AFFY-33

DLGAP5 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.0330426677011
p value: 0.0176642889554261
refers to: DLGAP5
refers to: 203764_at
t statistic: 4.77990496934027

NAP1L3
type: EnsemblDatabaseReference

KLF11 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.16090570945685
p value: 0.0294037550821155
refers to: KLF11
refers to: 218486_at
t statistic: -4.64105678979255

AREG DOWN in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.36762600259208
p value: 0.0458721791174373
refers to: AREG
refers to: 205239_at
t statistic: -3.95436558366392

TCEAL4
type: EnsemblDatabaseReference

208637_x_at
type: EFO_0005072
part of: A-AFFY-33

218542_at
type: EFO_0005072
part of: A-AFFY-33

CENPF
type: EnsemblDatabaseReference

TGIF1
type: EnsemblDatabaseReference

NAP1L3
type: EnsemblDatabaseReference

TRAV13-1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.28409091193143
p value: 0.0208361518466184
refers to: TRAV13-1
refers to: 217394_at
t statistic: 4.53201708775206

KLRF1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.4206265735084
p value: 0.0176642889554261
refers to: KLRF1
refers to: 220646_s_at
t statistic: -4.78176137123371

CD160 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.98180883804732
p value: 0.0251118734246062
refers to: CD160
refers to: 207840_at
t statistic: 4.88276584353093

TYMS UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.26950041143658
p value: 0.0138465529220615
refers to: 202589_at
refers to: TYMS
t statistic: 5.41901733681579

ZNF571 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.54865312623178
p value: 0.0171655786375969
refers to: 206648_at
refers to: ZNF571
t statistic: -4.87955507299314

BACH2
type: EnsemblDatabaseReference

ZSCAN18 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0084357120766
p value: 0.0303701160693685
refers to: ZSCAN18
refers to: 218312_s_at
t statistic: -3.92804289367702

TGIF1
type: EnsemblDatabaseReference

MCM2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.53890120107294
p value: 0.0141633867211677
refers to: MCM2
refers to: 202107_s_at
t statistic: 5.2996098126295

ASPM
type: EnsemblDatabaseReference

(Assay) Human Uninfected Sample N050-CD8+ T cells
type: Assay
identifier: Human Uninfected Sample N050-CD8+ T cells
has participant: A-AFFY-33

DDX60
type: EnsemblDatabaseReference

JUND
type: EnsemblDatabaseReference

GIMAP4 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.49525507723694
p value: 0.00202228150982195
refers to: GIMAP4
refers to: 219243_at
t statistic: 10.1359697729821

208898_at
type: EFO_0005072
part of: A-AFFY-33

CGRRF1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03034878156187
p value: 0.0102939653878772
refers to: CGRRF1
refers to: 204605_at
t statistic: -6.02765089105264

BACH2
type: EnsemblDatabaseReference

202307_s_at
type: EFO_0005072
part of: A-AFFY-33

NR4A3 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1670217638462
p value: 0.0275638253060555
refers to: 209959_at
refers to: NR4A3
t statistic: -4.07075091872988

201013_s_at
type: EFO_0005072
part of: A-AFFY-33

ASPM
type: EnsemblDatabaseReference

MXI1
type: EnsemblDatabaseReference

LAG3
type: EnsemblDatabaseReference

208925_at
type: EFO_0005072
part of: A-AFFY-33

JUND
type: EnsemblDatabaseReference

NUP43 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02466612605814
p value: 0.0169076022600629
refers to: 219007_at
refers to: NUP43
t statistic: 4.93355217144058

IFRD1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01333398140998
p value: 0.0275638253060555
refers to: IFRD1
refers to: 202147_s_at
t statistic: -4.07392234161908

219922_s_at
type: EFO_0005072
part of: A-AFFY-33

C3orf14
type: EnsemblDatabaseReference

PLCG2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.15832167462918
p value: 0.0100888784300794
refers to: 204613_at
refers to: PLCG2
t statistic: 6.22248037727358

CDKN3 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.84186336985621
p value: 0.0150714822881324
refers to: CDKN3
refers to: 209714_s_at
t statistic: 5.18985915743596

LAMP3 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.99557424219902
p value: 0.00487606242675006
refers to: 205569_at
refers to: LAMP3
t statistic: 6.48930650660112

CEP55
type: EnsemblDatabaseReference

AREG DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.91180517491586
p value: 0.0176219563744271
refers to: AREG
refers to: 205239_at
t statistic: -4.78954485978071

PDE4B DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.7670606324305
p value: 0.00360210608157664
refers to: PDE4B
refers to: 211302_s_at
t statistic: -8.44026829807687

IL7R DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01100199975604
p value: 0.0354953074210271
refers to: IL7R
refers to: 205798_at
t statistic: -4.32869459868109

MXI1
type: EnsemblDatabaseReference

CDKN1A DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.39974266652625
p value: 0.0202490003424058
refers to: 202284_s_at
refers to: CDKN1A
t statistic: -4.56964026503103

RBBP8 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.45136074186783
p value: 0.0111723167887286
refers to: 203344_s_at
refers to: RBBP8
t statistic: 5.78684681239798

SLC2A3 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06451572764886
p value: 0.0271290993529693
refers to: SLC2A3
refers to: 202497_x_at
t statistic: -4.09572176878637

LYPD3 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.16832645940009
p value: 0.0298008316102748
refers to: LYPD3
refers to: 204952_at
t statistic: -3.95512420870984

PLSCR1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.55553359764938
p value: 0.00617947320875934
refers to: 202446_s_at
refers to: PLSCR1
t statistic: 7.30166923132052

C3orf14
type: EnsemblDatabaseReference

RAD51 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.04894940124332
p value: 0.0298008316102748
refers to: 205024_s_at
refers to: RAD51
t statistic: 3.96063226596932

IDH2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.32257326804843
p value: 0.0236783029108566
refers to: IDH2
refers to: 210046_s_at
t statistic: 4.29427356094281

WHSC1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.06689935347931
p value: 0.0157194293044326
refers to: WHSC1
refers to: 209053_s_at
t statistic: 5.06751791979989

AOAH
type: EnsemblDatabaseReference

RFC4
type: EnsemblDatabaseReference

HERC5
type: EnsemblDatabaseReference

201477_s_at
type: EFO_0005072
part of: A-AFFY-33

NAP1L3 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.19451472494914
p value: 0.0233325967024865
refers to: NAP1L3
refers to: 204749_at
t statistic: -5.07165254250405

209053_s_at
type: EFO_0005072
part of: A-AFFY-33

CKAP4 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.44103814060325
p value: 0.0301505458152337
refers to: CKAP4
refers to: 200999_s_at
t statistic: -3.93707701444246

IFI44 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.86256532888662
p value: 0.0102939653878772
refers to: 214453_s_at
refers to: IFI44
t statistic: 6.04878900113036

S1PR1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10849691844914
p value: 0.0102939653878772
refers to: S1PR1
refers to: 204642_at
t statistic: -6.00948655748733

MEST
type: EnsemblDatabaseReference

TGIF1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.11391451970372
p value: 0.00857878666510938
refers to: 203313_s_at
refers to: TGIF1
t statistic: -6.72986790422208

IFIT3 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.11487251721476
p value: 0.0188948142917364
refers to: IFIT3
refers to: 204747_at
t statistic: 4.93310039422494

PFKFB3
type: EnsemblDatabaseReference

RTP4
type: EnsemblDatabaseReference

IFRD1
type: EnsemblDatabaseReference

202599_s_at
type: EFO_0005072
part of: A-AFFY-33

IL6ST
type: EnsemblDatabaseReference

SCO2
type: EnsemblDatabaseReference

ZBTB10 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.11520589305564
p value: 0.033963727930645
refers to: 219312_s_at
refers to: ZBTB10
t statistic: -4.40508581775528

SLAMF7
type: EnsemblDatabaseReference

(Assay) Human Non-progressor HIV Sample L115-CD4+ T cells
type: Assay
identifier: Human Non-progressor HIV Sample L115-CD4+ T cells
has participant: A-AFFY-33

204767_s_at
type: EFO_0005072
part of: A-AFFY-33

CDKN1A DOWN in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.28256444455295
p value: 0.0134218120205997
refers to: 202284_s_at
refers to: CDKN1A
t statistic: -5.52832712072732

207828_s_at
type: EFO_0005072
part of: A-AFFY-33

OAS3 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.28518624539922
p value: 8.25600443106728E-4
refers to: OAS3
refers to: 218400_at
t statistic: 9.13390992023261

PIK3IP1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01700936475803
p value: 0.0359458167186678
refers to: PIK3IP1
refers to: 221757_at
t statistic: -3.72049782625433

CDC7 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.34427016476753
p value: 0.0219951515093584
refers to: CDC7
refers to: 204510_at
t statistic: 4.44491988776874

PFKFB3
type: EnsemblDatabaseReference

IFRD1
type: EnsemblDatabaseReference

EIF5 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08642501724497
p value: 0.0151025146306542
refers to: EIF5
refers to: 208706_s_at
t statistic: -5.16420079768134

MX1 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.42113532089606
p value: 0.0112648860691265
refers to: MX1
refers to: 202086_at
t statistic: 5.93018540935995

NUP37 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.23237471456828
p value: 0.0127501496190635
refers to: NUP37
refers to: 218622_at
t statistic: 5.51004774845282

CX3CR1
type: EnsemblDatabaseReference

SCO2
type: EnsemblDatabaseReference

ACOT7
type: EnsemblDatabaseReference

(Sample) cell type/CD8+ T cell
type: CL_0000084
property type: cell type
property value: CD8+ T cell

SLAMF7
type: EnsemblDatabaseReference

CD160
type: EnsemblDatabaseReference

POU2AF1
type: EnsemblDatabaseReference

204952_at
type: EFO_0005072
part of: A-AFFY-33

TOP2A UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.92880676492531
p value: 0.0289709666035046
refers to: TOP2A
refers to: 201291_s_at
t statistic: 3.99653352337171

CX3CR1
type: EnsemblDatabaseReference

IFI27 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 3.56023118451087
p value: 0.0237809443628122
refers to: IFI27
refers to: 202411_at
t statistic: 5.0027253148629

203764_at
type: EFO_0005072
part of: A-AFFY-33

ACOT7
type: EnsemblDatabaseReference

DTL UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.37903278337334
p value: 0.0157902107569389
refers to: DTL
refers to: 218585_s_at
t statistic: 5.05404895783304

(Assay) Human Uninfected Sample N050-CD4+ T cells
type: Assay
identifier: Human Uninfected Sample N050-CD4+ T cells
has participant: A-AFFY-33

ITGA6 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.303117312524
p value: 0.00552420902428497
refers to: ITGA6
refers to: 215177_s_at
t statistic: -7.77748817547706

PRDX3
type: EnsemblDatabaseReference

CD160
type: EnsemblDatabaseReference

213975_s_at
type: EFO_0005072
part of: A-AFFY-33

204793_at
type: EFO_0005072
part of: A-AFFY-33

POU2AF1
type: EnsemblDatabaseReference

PIK3IP1
type: EnsemblDatabaseReference

TSC22D3 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06594087690863
p value: 0.00942926231848997
refers to: TSC22D3
refers to: 207001_x_at
t statistic: -6.53047658606127

(Assay) Human Chronic HIV Sample C080-CD4+ T cells
type: Assay
identifier: Human Chronic HIV Sample C080-CD4+ T cells
has participant: A-AFFY-33

202430_s_at
type: EFO_0005072
part of: A-AFFY-33

202519_at
type: EFO_0005072
part of: A-AFFY-33

ZNF571
type: EnsemblDatabaseReference

SKIL DOWN in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3750328347376
p value: 0.0166448706365128
refers to: SKIL
refers to: 217591_at
t statistic: -5.13360244150938

PRC1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02530408527669
p value: 0.0495705422012891
refers to: PRC1
refers to: 218009_s_at
t statistic: 3.33398280897267

HERC5 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.43653341717231
p value: 0.0463869155887202
refers to: HERC5
refers to: 219863_at
t statistic: 3.9209464638591

PIK3IP1
type: EnsemblDatabaseReference

IFI27
type: EnsemblDatabaseReference

212020_s_at
type: EFO_0005072
part of: A-AFFY-33

ZNF395 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.4172622865891
p value: 0.0284347600064052
refers to: 218149_s_at
refers to: ZNF395
t statistic: -4.02438149457757

217865_at
type: EFO_0005072
part of: A-AFFY-33

TYMS UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 3.18136976513139
p value: 0.00360210608157664
refers to: 202589_at
refers to: TYMS
t statistic: 8.41650834940477

NDC80
type: EnsemblDatabaseReference

CCR7 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18371024640521
p value: 0.0317833928126635
refers to: CCR7
refers to: 206337_at
t statistic: -4.50297923600364

NR3C2
type: EnsemblDatabaseReference

MAD2L1
type: EnsemblDatabaseReference

CD38
type: EnsemblDatabaseReference

ETNK1
type: EnsemblDatabaseReference

221757_at
type: EFO_0005072
part of: A-AFFY-33

PRC1
type: EnsemblDatabaseReference

205552_s_at
type: EFO_0005072
part of: A-AFFY-33

JMJD6
type: EnsemblDatabaseReference

MELK
type: EnsemblDatabaseReference

201926_s_at
type: EFO_0005072
part of: A-AFFY-33

NDC80
type: EnsemblDatabaseReference

206337_at
type: EFO_0005072
part of: A-AFFY-33

217394_at
type: EFO_0005072
part of: A-AFFY-33

SUCLA2
type: EnsemblDatabaseReference

KLF9
type: EnsemblDatabaseReference

ETNK1
type: EnsemblDatabaseReference

RAD51
type: EnsemblDatabaseReference

CD38
type: EnsemblDatabaseReference

IRS2
type: EnsemblDatabaseReference

PRC1
type: EnsemblDatabaseReference

PFKFB3 DOWN in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.22525102476884
p value: 0.0421021813182691
refers to: PFKFB3
refers to: 202464_s_at
t statistic: -4.05618587423001

ZFP36L2
type: EnsemblDatabaseReference

CCNA2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.62251452646948
p value: 0.0162890425121426
refers to: 203418_at
refers to: CCNA2
t statistic: 4.99103274266723

GINS2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.44073839379595
p value: 0.0114592080758192
refers to: GINS2
refers to: 221521_s_at
t statistic: 5.6974662094267

C6orf211
type: EnsemblDatabaseReference

LYPD3
type: EnsemblDatabaseReference

CDKN3
type: EnsemblDatabaseReference

NRIP1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.7701837059964
p value: 0.0327986279407881
refers to: 202599_s_at
refers to: NRIP1
t statistic: -3.8492928526166

IFIT3
type: EnsemblDatabaseReference

C6orf211 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2110728221973
p value: 0.0138465529220615
refers to: C6orf211
refers to: 218195_at
t statistic: 5.42693742459336

WHSC1
type: EnsemblDatabaseReference

KLF9
type: EnsemblDatabaseReference

SMC1A UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.18295142693393
p value: 0.0159062366820259
refers to: SMC1A
refers to: 201589_at
t statistic: 5.04326345274792

RAD51
type: EnsemblDatabaseReference

210052_s_at
type: EFO_0005072
part of: A-AFFY-33

IRS2
type: EnsemblDatabaseReference

ZFP36L2
type: EnsemblDatabaseReference

OASL
type: EnsemblDatabaseReference

LYPD3
type: EnsemblDatabaseReference

SSBP2
type: EnsemblDatabaseReference

IRF7 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.44627229833117
p value: 0.0442242503237879
refers to: IRF7
refers to: 208436_s_at
t statistic: 4.31179957914483

(Assay) Human Uninfected Sample N071-CD4+ T cells
type: Assay
identifier: Human Uninfected Sample N071-CD4+ T cells
has participant: A-AFFY-33

NUSAP1
type: EnsemblDatabaseReference

C6orf211
type: EnsemblDatabaseReference

JMJD6 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01181981891363
p value: 0.0252145198380238
refers to: JMJD6
refers to: 212723_at
t statistic: -4.2010132487337

CDKN3
type: EnsemblDatabaseReference

IFIT3
type: EnsemblDatabaseReference

NUSAP1 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.16993422629808
p value: 0.0031567610144536
refers to: NUSAP1
refers to: 218039_at
t statistic: 7.86115615022873

221059_s_at
type: EFO_0005072
part of: A-AFFY-33

203939_at
type: EFO_0005072
part of: A-AFFY-33

GINS1
type: EnsemblDatabaseReference

PRKD3 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05110600957851
p value: 0.0283374254223405
refers to: 218236_s_at
refers to: PRKD3
t statistic: -4.7081302398592

SSBP2
type: EnsemblDatabaseReference

SLC27A2
type: EnsemblDatabaseReference

TPD52
type: EnsemblDatabaseReference

PLEK
type: EnsemblDatabaseReference

S100A8 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -2.38993358155604
p value: 0.0235329453265731
refers to: 202917_s_at
refers to: S100A8
t statistic: -4.30066542664395

AIM2
type: EnsemblDatabaseReference

GINS1
type: EnsemblDatabaseReference

OAS1 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.70525630678076
p value: 0.0417877103775233
refers to: OAS1
refers to: 202869_at
t statistic: 4.05797938145557

SLC27A2
type: EnsemblDatabaseReference

SUCLA2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.13238549143414
p value: 0.0345897991130589
refers to: 202930_s_at
refers to: SUCLA2
t statistic: 3.76981201710069

TPD52
type: EnsemblDatabaseReference

202364_at
type: EFO_0005072
part of: A-AFFY-33

LAG3 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.43018598801443
p value: 0.0417877103775233
refers to: LAG3
refers to: 206486_at
t statistic: 4.06386384827078

PLEK
type: EnsemblDatabaseReference

SH2D1A
type: EnsemblDatabaseReference

ZBTB10 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.38132614124723
p value: 0.00797890085158689
refers to: ZBTB10
refers to: 219312_s_at
t statistic: -6.58980068360305

211423_s_at
type: EFO_0005072
part of: A-AFFY-33

201663_s_at
type: EFO_0005072
part of: A-AFFY-33

219243_at
type: EFO_0005072
part of: A-AFFY-33

IFNG UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.52770428609497
p value: 0.0439182811965159
refers to: IFNG
refers to: 210354_at
t statistic: 3.4679687383921

207181_s_at
type: EFO_0005072
part of: A-AFFY-33

PER1
type: EnsemblDatabaseReference

212021_s_at
type: EFO_0005072
part of: A-AFFY-33

(Assay) Human Chronic HIV Sample C101-CD8+ T cells
type: Assay
identifier: Human Chronic HIV Sample C101-CD8+ T cells
has participant: A-AFFY-33

(Assay) Human Chronic HIV Sample C102-CD8+ T cells
type: Assay
identifier: Human Chronic HIV Sample C102-CD8+ T cells
has participant: A-AFFY-33

SH2D1A
type: EnsemblDatabaseReference

CBX7
type: EnsemblDatabaseReference

POU2AF1 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.50185434788275
p value: 0.00220016182481646
refers to: POU2AF1
refers to: 205267_at
t statistic: 8.40683263778764

BCL11B DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07882849128994
p value: 0.013833484928296
refers to: 219528_s_at
refers to: BCL11B
t statistic: -5.34070753478552

NCBP1
type: EnsemblDatabaseReference

220646_s_at
type: EFO_0005072
part of: A-AFFY-33

ZNF91 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.20051631626641
p value: 0.0262788831416298
refers to: ZNF91
refers to: 206059_at
t statistic: -4.13068468274074

205259_at
type: EFO_0005072
part of: A-AFFY-33

IFI35 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.15025281261412
p value: 0.0116506971986431
refers to: 209417_s_at
refers to: IFI35
t statistic: 5.64123908142892

TCEAL4 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1225264171797
p value: 0.0298742988744095
refers to: TCEAL4
refers to: 202371_at
t statistic: -3.94733627378323

MCM7
type: EnsemblDatabaseReference

NME4 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.186208135322
p value: 0.0151844563840345
refers to: NME4
refers to: 212739_s_at
t statistic: -5.13169108975644

A-AFFY-33
type: EFO_0000269

CBX7
type: EnsemblDatabaseReference

203214_x_at
type: EFO_0005072
part of: A-AFFY-33

AFFX-HUMISGF3A/M97935_MA_at
type: EFO_0005072
part of: A-AFFY-33

SLC25A20
type: EnsemblDatabaseReference

SSBP2 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10797830574641
p value: 0.0126869523964309
refers to: SSBP2
refers to: 203787_at
t statistic: -5.53538552756676

219017_at
type: EFO_0005072
part of: A-AFFY-33

218049_s_at
type: EFO_0005072
part of: A-AFFY-33

LEF1
type: EnsemblDatabaseReference

205639_at
type: EFO_0005072
part of: A-AFFY-33

CD24
type: EnsemblDatabaseReference

RRM2 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.62711744824307
p value: 0.0112648860691265
refers to: RRM2
refers to: 209773_s_at
t statistic: 6.02557574266122

STAT1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.07840597207381
p value: 0.0151844563840345
refers to: STAT1
refers to: 209969_s_at
t statistic: 5.14389213491511

LAMP3
type: EnsemblDatabaseReference

MRPL13 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.14204323781602
p value: 0.0126869523964309
refers to: 218049_s_at
refers to: MRPL13
t statistic: 5.54116487994793

(Factor value) DISEASE/early HIV infection
type: EFO_0000764
property type: DISEASE
property value: early HIV infection

219007_at
type: EFO_0005072
part of: A-AFFY-33

LGALS9 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.15630577931242
p value: 0.0350289033762347
refers to: LGALS9
refers to: 203236_s_at
t statistic: 4.34159985172859

CEP55 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.73089558731683
p value: 0.0156993627730685
refers to: CEP55
refers to: 218542_at
t statistic: 5.07633705521014

IFI6 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.19630384321332
p value: 0.0139260755097124
refers to: IFI6
refers to: 204415_at
t statistic: 5.35941686772782

KIF15
type: EnsemblDatabaseReference

RGCC
type: EnsemblDatabaseReference

GADD45A DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.74942681244822
p value: 0.013358810482363
refers to: GADD45A
refers to: 203725_at
t statistic: -5.37740585290887

PTP4A1
type: EnsemblDatabaseReference

LAMP3
type: EnsemblDatabaseReference

CHPT1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06518418046335
p value: 0.0247769649365411
refers to: CHPT1
refers to: 221675_s_at
t statistic: -4.9086024872832

221756_at
type: EFO_0005072
part of: A-AFFY-33

FAM134B DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18374784679125
p value: 0.049738216341817
refers to: 218532_s_at
refers to: FAM134B
t statistic: -3.32649582868185

CD38 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.76099790128989
p value: 0.0141633867211677
refers to: CD38
refers to: 205692_s_at
t statistic: 5.30206629392409

(Sample) disease/uninfected
type: EFO_0001460
property type: disease
property value: uninfected

CCNB1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.41990394329274
p value: 0.0169076022600629
refers to: CCNB1
refers to: 214710_s_at
t statistic: 4.92125847891703

RGCC
type: EnsemblDatabaseReference

209959_at
type: EFO_0005072
part of: A-AFFY-33

202972_s_at
type: EFO_0005072
part of: A-AFFY-33

GMNN
type: EnsemblDatabaseReference

PTP4A1
type: EnsemblDatabaseReference

SH2D1A UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1586055217038
p value: 0.0114592080758192
refers to: SH2D1A
refers to: 211211_x_at
t statistic: 5.70333860856844

219228_at
type: EFO_0005072
part of: A-AFFY-33

CCR5
type: EnsemblDatabaseReference

PYCARD
type: EnsemblDatabaseReference

PTTG1
type: EnsemblDatabaseReference

YWHAE UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.13091383845286
p value: 0.0417203927190704
refers to: YWHAE
refers to: 210317_s_at
t statistic: 3.52379157142646

DENND2D UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22747990883074
p value: 0.0104503112899665
refers to: DENND2D
refers to: 221081_s_at
t statistic: 5.95785909434248

PSMB2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.16903311222501
p value: 0.0174192733278586
refers to: PSMB2
refers to: 200039_s_at
t statistic: 4.81632127713663

(Assay) Human Acute HIV Sample A044-CD4 T cells
type: Assay
identifier: Human Acute HIV Sample A044-CD4 T cells
has participant: A-AFFY-33

ZWILCH UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.11858907802579
p value: 0.0259554650234064
refers to: ZWILCH
refers to: 218349_s_at
t statistic: 4.15313097064509

COL6A2 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.63404221008621
p value: 0.0259554650234064
refers to: 209156_s_at
refers to: COL6A2
t statistic: -4.154907715859

GMNN
type: EnsemblDatabaseReference

CCR5
type: EnsemblDatabaseReference

CD38 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.07554155079299
p value: 0.0109469591885842
refers to: 205692_s_at
refers to: CD38
t statistic: 6.14421150274976

RP11-553L6.5
type: EnsemblDatabaseReference

(Factor value) DISEASE/non-progressive HIV infection
type: EFO_0000764
property type: DISEASE
property value: non-progressive HIV infection

PYCARD
type: EnsemblDatabaseReference

GABARAPL1
type: EnsemblDatabaseReference

IFIT1 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.8443019393865
p value: 0.0104576834959935
refers to: 203153_at
refers to: IFIT1
t statistic: 5.65870531809294

219528_s_at
type: EFO_0005072
part of: A-AFFY-33

208966_x_at
type: EFO_0005072
part of: A-AFFY-33

209520_s_at
type: EFO_0005072
part of: A-AFFY-33

TPD52 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09882870986269
p value: 0.0221951709738802
refers to: TPD52
refers to: 201689_s_at
t statistic: -5.2034048695845

(Factor value) CELL_TYPE/CD8+ T cell
type: CL_0000084
property type: CELL_TYPE
property value: CD8+ T cell

SPATS2L UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22756346537437
p value: 0.0114592080758192
refers to: 222154_s_at
refers to: SPATS2L
t statistic: 5.68191406543684

ACTN1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.39786584454408
p value: 9.90555749543161E-4
refers to: ACTN1
refers to: 208637_x_at
t statistic: -12.2539948975871

SLC2A3 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21921890978024
p value: 0.0247892473227309
refers to: SLC2A3
refers to: 202499_s_at
t statistic: -4.24591709838419

212560_at
type: EFO_0005072
part of: A-AFFY-33

ZWINT
type: EnsemblDatabaseReference

NR4A2 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.49188406176772
p value: 0.013358810482363
refers to: NR4A2
refers to: 204622_x_at
t statistic: -5.37556360977343

GABARAPL1
type: EnsemblDatabaseReference

POU2AF1 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.14815790110417
p value: 0.0444665139631558
refers to: POU2AF1
refers to: 205267_at
t statistic: 4.29364182005821

ATP6V1D UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.10003720449635
p value: 0.0111378031750243
refers to: ATP6V1D
refers to: 208898_at
t statistic: 5.81044234318151

(Assay) Human Uninfected Sample N110-CD4+ T cells
type: Assay
identifier: Human Uninfected Sample N110-CD4+ T cells
has participant: A-AFFY-33

ZNF91 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.15541190710789
p value: 0.0246115123556339
refers to: ZNF91
refers to: 206059_at
t statistic: -4.96803720533035

CLDND1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.28839013443103
p value: 0.00797890085158689
refers to: CLDND1
refers to: 208925_at
t statistic: 6.60296028090984

PRKD3
type: EnsemblDatabaseReference

PLP2
type: EnsemblDatabaseReference

GNAQ
type: EnsemblDatabaseReference

MRPL15
type: EnsemblDatabaseReference

SRP54
type: EnsemblDatabaseReference

CSGALNACT1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.6229164273119
p value: 0.0102939653878772
refers to: CSGALNACT1
refers to: 219049_at
t statistic: -6.02448014935662

GZMA
type: EnsemblDatabaseReference

EZH2
type: EnsemblDatabaseReference

PLSCR1
type: EnsemblDatabaseReference

IFI44 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.82088836702814
p value: 4.51451780232215E-4
refers to: IFI44
refers to: 214453_s_at
t statistic: 10.0282542952846

ADA
type: EnsemblDatabaseReference

ADA UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.08897733830739
p value: 0.0173836477377635
refers to: ADA
refers to: 204639_at
t statistic: 4.82626116922598

PRKD3
type: EnsemblDatabaseReference

GNAQ
type: EnsemblDatabaseReference

PLP2
type: EnsemblDatabaseReference

SRP54
type: EnsemblDatabaseReference

ACTN1
type: EnsemblDatabaseReference

IFI6 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.11569231254898
p value: 0.0133538100481615
refers to: IFI6
refers to: 204415_at
t statistic: 5.40519163575125

GZMA
type: EnsemblDatabaseReference

NUP37
type: EnsemblDatabaseReference

211458_s_at
type: EFO_0005072
part of: A-AFFY-33

201202_at
type: EFO_0005072
part of: A-AFFY-33

203554_x_at
type: EFO_0005072
part of: A-AFFY-33

RRM1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.05416091050525
p value: 0.0378061355320358
refers to: RRM1
refers to: 201477_s_at
t statistic: 3.66862767603141

IDH2
type: EnsemblDatabaseReference

PLSCR1
type: EnsemblDatabaseReference

COTL1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.04042598164994
p value: 0.0150714822881324
refers to: COTL1
refers to: 221059_s_at
t statistic: 5.16916780657606

219312_s_at
type: EFO_0005072
part of: A-AFFY-33

ADA
type: EnsemblDatabaseReference

STAT1 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.8790962798198
p value: 0.0364517920041129
refers to: 209969_s_at
refers to: STAT1
t statistic: 4.29876060197353

NUP37
type: EnsemblDatabaseReference

IDH2
type: EnsemblDatabaseReference

(Assay) Human Chronic HIV Sample C062-CD8+ T cells
type: Assay
identifier: Human Chronic HIV Sample C062-CD8+ T cells
has participant: A-AFFY-33

PTCH1
type: EnsemblDatabaseReference

FXYD5 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04315992273532
p value: 0.0382304328864695
refers to: FXYD5
refers to: 218084_x_at
t statistic: -3.65760963897798

FANCI UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.25384185802044
p value: 0.0298008316102748
refers to: FANCI
refers to: 213007_at
t statistic: 3.95863669893329

GTF2H1
type: EnsemblDatabaseReference

ISG15 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.48621689019383
p value: 0.00668430778592538
refers to: 205483_s_at
refers to: ISG15
t statistic: 6.85566189394205

GADD45A DOWN in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.39915494077303
p value: 0.0139396195964741
refers to: 203725_at
refers to: GADD45A
t statistic: -5.34603235338699

NCAPG2
type: EnsemblDatabaseReference

KIF11
type: EnsemblDatabaseReference

212196_at
type: EFO_0005072
part of: A-AFFY-33

PTCH1
type: EnsemblDatabaseReference

SLC7A5 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.41807168612964
p value: 0.00202228150982195
refers to: 201195_s_at
refers to: SLC7A5
t statistic: -9.83581899927262

GTF2H1
type: EnsemblDatabaseReference

PLCG2
type: EnsemblDatabaseReference

218883_s_at
type: EFO_0005072
part of: A-AFFY-33

OAS1 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.04234071107461
p value: 0.030053584974324
refers to: OAS1
refers to: 205552_s_at
t statistic: 4.58384692787122

PTP4A1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04010233256217
p value: 0.0169076022600629
refers to: PTP4A1
refers to: 200732_s_at
t statistic: -4.92130695592407

202954_at
type: EFO_0005072
part of: A-AFFY-33

TSC22D3 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.17258280169447
p value: 0.0339966827823693
refers to: TSC22D3
refers to: 207001_x_at
t statistic: -3.79040839115176

TNFSF10 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.21847248746491
p value: 0.00275878421956647
refers to: TNFSF10
refers to: 202687_s_at
t statistic: 9.08677762451083

TNFSF10 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.81670746173305
p value: 0.0470853387792893
refers to: TNFSF10
refers to: 214329_x_at
t statistic: 3.91637823200131

NT5E
type: EnsemblDatabaseReference

NRIP1
type: EnsemblDatabaseReference

NCAPG2
type: EnsemblDatabaseReference

HLA-DRA UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.93706028564841
p value: 0.0151844563840345
refers to: 210982_s_at
refers to: HLA-DRA
t statistic: 5.14618083565094

PLK3 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.13550573444464
p value: 0.00668430778592538
refers to: PLK3
refers to: 204958_at
t statistic: -6.87549569660808

RBBP8
type: EnsemblDatabaseReference

(Assay) Human Non-progressor HIV Sample L115-CD8+ T cells
type: Assay
identifier: Human Non-progressor HIV Sample L115-CD8+ T cells
has participant: A-AFFY-33

RACGAP1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.46467477941188
p value: 0.0229963389870342
refers to: RACGAP1
refers to: 222077_s_at
t statistic: 4.33899710955583

EIF5
type: EnsemblDatabaseReference

UBE2C
type: EnsemblDatabaseReference

NR4A3
type: EnsemblDatabaseReference

PLCG2
type: EnsemblDatabaseReference

CCNB1
type: EnsemblDatabaseReference

213158_at
type: EFO_0005072
part of: A-AFFY-33

CSGALNACT1
type: EnsemblDatabaseReference

205241_at
type: EFO_0005072
part of: A-AFFY-33

213093_at
type: EFO_0005072
part of: A-AFFY-33

211209_x_at
type: EFO_0005072
part of: A-AFFY-33

RBBP8
type: EnsemblDatabaseReference

EIF5
type: EnsemblDatabaseReference

218486_at
type: EFO_0005072
part of: A-AFFY-33

UBE2C
type: EnsemblDatabaseReference

ZBTB18
type: EnsemblDatabaseReference

NR4A3
type: EnsemblDatabaseReference

(Assay) Human Non-progressor HIV Sample L134-CD8+ T cells
type: Assay
identifier: Human Non-progressor HIV Sample L134-CD8+ T cells
has participant: A-AFFY-33

218039_at
type: EFO_0005072
part of: A-AFFY-33

CSGALNACT1
type: EnsemblDatabaseReference

MCM4 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.41138514586457
p value: 0.0177847599053049
refers to: MCM4
refers to: 222037_at
t statistic: 4.76433896336154

219352_at
type: EFO_0005072
part of: A-AFFY-33

STMN1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.11349019388384
p value: 0.020137360780964
refers to: STMN1
refers to: 200783_s_at
t statistic: 4.57828433498331

36711_at
type: EFO_0005072
part of: A-AFFY-33

(Assay) Human Acute HIV Sample A189-CD8+ T cells
type: Assay
identifier: Human Acute HIV Sample A189-CD8+ T cells
has participant: A-AFFY-33

200799_at
type: EFO_0005072
part of: A-AFFY-33

LTBP3 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.29153169047818
p value: 0.0463869155887202
refers to: 219922_s_at
refers to: LTBP3
t statistic: -3.92040294254902

210983_s_at
type: EFO_0005072
part of: A-AFFY-33

222077_s_at
type: EFO_0005072
part of: A-AFFY-33

CDC7
type: EnsemblDatabaseReference

CD24 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.58201130318003
p value: 0.0398119239558222
refers to: CD24
refers to: 216379_x_at
t statistic: 4.44019221309498

NR4A2 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.4872986307468
p value: 0.0157194293044326
refers to: 216248_s_at
refers to: NR4A2
t statistic: -5.06955875304044

FAM13A
type: EnsemblDatabaseReference

200730_s_at
type: EFO_0005072
part of: A-AFFY-33

(Assay) Human Acute HIV Sample A144-CD4+ T cells
type: Assay
identifier: Human Acute HIV Sample A144-CD4+ T cells
has participant: A-AFFY-33

JUND DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.22244086884927
p value: 0.0333376088476679
refers to: JUND
refers to: 203751_x_at
t statistic: -3.81984545774444

SNN DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.7833479953887
p value: 0.00502267890096283
refers to: 218032_at
refers to: SNN
t statistic: -8.54787588581712

FEN1
type: EnsemblDatabaseReference

SORL1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01640694527949
p value: 0.0417877103775233
refers to: SORL1
refers to: 203509_at
t statistic: -4.06102009512212

204613_at
type: EFO_0005072
part of: A-AFFY-33

CDC7
type: EnsemblDatabaseReference

COL6A2
type: EnsemblDatabaseReference

BCL11B DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07235610843916
p value: 0.00632164896157296
refers to: BCL11B
refers to: 219528_s_at
t statistic: -7.23098325701792

200039_s_at
type: EFO_0005072
part of: A-AFFY-33

(Assay) Human Acute HIV Sample A064-CD4+ T cells
type: Assay
identifier: Human Acute HIV Sample A064-CD4+ T cells
has participant: A-AFFY-33

218195_at
type: EFO_0005072
part of: A-AFFY-33

218032_at
type: EFO_0005072
part of: A-AFFY-33

203276_at
type: EFO_0005072
part of: A-AFFY-33

CKS2
type: EnsemblDatabaseReference

FEN1
type: EnsemblDatabaseReference

BCL11B
type: EnsemblDatabaseReference

MTHFD1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.15033118054203
p value: 0.0179677343548467
refers to: MTHFD1
refers to: 202309_at
t statistic: 4.73312666832847

CKAP4 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.22395057481261
p value: 0.0323048476946615
refers to: CKAP4
refers to: 200999_s_at
t statistic: -4.47202814706785

IFI16
type: EnsemblDatabaseReference

HN1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.05507767450908
p value: 0.0181924939837029
refers to: HN1
refers to: 217755_at
t statistic: 4.71806816182666

COL6A2
type: EnsemblDatabaseReference

CDC20
type: EnsemblDatabaseReference

CCNB2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.56488817414637
p value: 0.0147223426462775
refers to: CCNB2
refers to: 202705_at
t statistic: 5.23151351647031

221558_s_at
type: EFO_0005072
part of: A-AFFY-33

CKS2
type: EnsemblDatabaseReference

BCL11B
type: EnsemblDatabaseReference

210116_at
type: EFO_0005072
part of: A-AFFY-33

219306_at
type: EFO_0005072
part of: A-AFFY-33

203960_s_at
type: EFO_0005072
part of: A-AFFY-33

(Assay) Human Non-progressor HIV Sample L015-CD4+ T cells
type: Assay
identifier: Human Non-progressor HIV Sample L015-CD4+ T cells
has participant: A-AFFY-33

CDC20
type: EnsemblDatabaseReference

ACTN1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.77663085318856
p value: 0.0107841010583374
refers to: 208636_at
refers to: ACTN1
t statistic: -6.20747088133549

(Assay) Human Chronic HIV Sample C102-CD4+ T cells
type: Assay
identifier: Human Chronic HIV Sample C102-CD4+ T cells
has participant: A-AFFY-33

221666_s_at
type: EFO_0005072
part of: A-AFFY-33

PRNP DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.43247414618854
p value: 0.0109042038143428
refers to: PRNP
refers to: 201300_s_at
t statistic: -5.84356651176624

204173_at
type: EFO_0005072
part of: A-AFFY-33

201619_at
type: EFO_0005072
part of: A-AFFY-33

NAA16 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.19767717364647
p value: 0.0261970958109084
refers to: NAA16
refers to: 219378_at
t statistic: -4.84433323503438

205769_at
type: EFO_0005072
part of: A-AFFY-33

CHPT1
type: EnsemblDatabaseReference

(Assay) Human Uninfected Sample N001-CD4+ T cells
type: Assay
identifier: Human Uninfected Sample N001-CD4+ T cells
has participant: A-AFFY-33

215440_s_at
type: EFO_0005072
part of: A-AFFY-33

OAS1 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.48438616900269
p value: 0.00357361119461003
refers to: OAS1
refers to: 205552_s_at
t statistic: 7.52944444647895

210645_s_at
type: EFO_0005072
part of: A-AFFY-33

HMMR
type: EnsemblDatabaseReference

PSMA4
type: EnsemblDatabaseReference

202499_s_at
type: EFO_0005072
part of: A-AFFY-33

DEFA4
type: EnsemblDatabaseReference

ZSCAN18
type: EnsemblDatabaseReference

NELL2
type: EnsemblDatabaseReference

211368_s_at
type: EFO_0005072
part of: A-AFFY-33

209184_s_at
type: EFO_0005072
part of: A-AFFY-33

GBP1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.05917037165324
p value: 0.0111723167887286
refers to: GBP1
refers to: 202270_at
t statistic: 5.79944143778531

NR4A2
type: EnsemblDatabaseReference

202930_s_at
type: EFO_0005072
part of: A-AFFY-33

XAF1 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.90818157072485
p value: 0.0233325967024865
refers to: XAF1
refers to: 206133_at
t statistic: 5.03045477975599

D4S234E DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.27850187402263
p value: 0.00704446984460253
refers to: D4S234E
refers to: 209569_x_at
t statistic: -6.77907132324322

CHPT1
type: EnsemblDatabaseReference

SC5D
type: EnsemblDatabaseReference

MKI67
type: EnsemblDatabaseReference

204790_at
type: EFO_0005072
part of: A-AFFY-33

ZWILCH
type: EnsemblDatabaseReference

TGIF1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.54236527893302
p value: 0.00764321057741511
refers to: TGIF1
refers to: 203313_s_at
t statistic: -6.68591099046031

NELL2
type: EnsemblDatabaseReference

DGKA DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03181747689303
p value: 0.0226525757589227
refers to: DGKA
refers to: 211272_s_at
t statistic: -5.11866250639859

221234_s_at
type: EFO_0005072
part of: A-AFFY-33

ISG15 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.21138639828983
p value: 0.00552420902428497
refers to: 205483_s_at
refers to: ISG15
t statistic: 7.66603208459975

209570_s_at
type: EFO_0005072
part of: A-AFFY-33

212195_at
type: EFO_0005072
part of: A-AFFY-33

NR4A2
type: EnsemblDatabaseReference

IFI44L UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 3.86312566240467
p value: 0.00544757209102644
refers to: IFI44L
refers to: 204439_at
t statistic: 8.02601998713791

CCNB2
type: EnsemblDatabaseReference

(Assay) Human Acute HIV Sample A144-CD8+ T cells
type: Assay
identifier: Human Acute HIV Sample A144-CD8+ T cells
has participant: A-AFFY-33

202869_at
type: EFO_0005072
part of: A-AFFY-33

IFI16 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.23415303566173
p value: 0.00133298864004891
refers to: IFI16
refers to: 206332_s_at
t statistic: 11.1764760863475

202451_at
type: EFO_0005072
part of: A-AFFY-33

MKI67
type: EnsemblDatabaseReference

RRM2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 3.19510307336126
p value: 0.0051047160420662
refers to: 201890_at
refers to: RRM2
t statistic: 7.68135289438227

ZWILCH
type: EnsemblDatabaseReference

204639_at
type: EFO_0005072
part of: A-AFFY-33

OAS1 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.8586445832557
p value: 0.00142511507394474
refers to: 205552_s_at
refers to: OAS1
t statistic: 8.41436816907381

CD9 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.35341569654808
p value: 0.0478913269539333
refers to: CD9
refers to: 201005_at
t statistic: -3.88424851796341

218793_s_at
type: EFO_0005072
part of: A-AFFY-33

CCNB2
type: EnsemblDatabaseReference

212914_at
type: EFO_0005072
part of: A-AFFY-33

BIRC5
type: EnsemblDatabaseReference

HSPA1A UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.3267248982573
p value: 0.0348360320397589
refers to: HSPA1A
refers to: 200799_at
t statistic: 3.76253230181052

TNFSF10
type: EnsemblDatabaseReference

IFI44
type: EnsemblDatabaseReference

IRS2 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -2.01350276557942
p value: 0.0266527534974771
refers to: IRS2
refers to: 209185_s_at
t statistic: -4.11368930945064

SKIL
type: EnsemblDatabaseReference

201890_at
type: EFO_0005072
part of: A-AFFY-33

203725_at
type: EFO_0005072
part of: A-AFFY-33

NUSAP1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.42482188258109
p value: 0.0392281575170842
refers to: 219978_s_at
refers to: NUSAP1
t statistic: 3.6134599424419

212739_s_at
type: EFO_0005072
part of: A-AFFY-33

IFI35
type: EnsemblDatabaseReference

GBP1 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.98555923617855
p value: 0.0223212502801107
refers to: 202270_at
refers to: GBP1
t statistic: 4.70619458681923

202497_x_at
type: EFO_0005072
part of: A-AFFY-33

(Assay) Human Acute HIV Sample A189-CD4+ T cells
type: Assay
identifier: Human Acute HIV Sample A189-CD4+ T cells
has participant: A-AFFY-33

NELL2 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.72455959904192
p value: 0.00544757209102644
refers to: NELL2
refers to: 203413_at
t statistic: -8.13839447067151

UBE2C UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.16162804989823
p value: 0.0133538100481615
refers to: UBE2C
refers to: 202954_at
t statistic: 5.38312944823204

EZH2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.90912128028204
p value: 0.0107990419400758
refers to: EZH2
refers to: 203358_s_at
t statistic: 5.91372903058685

DTL
type: EnsemblDatabaseReference

208002_s_at
type: EFO_0005072
part of: A-AFFY-33

212722_s_at
type: EFO_0005072
part of: A-AFFY-33

IFI35
type: EnsemblDatabaseReference

IGF1R
type: EnsemblDatabaseReference

207269_at
type: EFO_0005072
part of: A-AFFY-33

211676_s_at
type: EFO_0005072
part of: A-AFFY-33

208894_at
type: EFO_0005072
part of: A-AFFY-33

RSAD2 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2539384290302
p value: 0.00708016996076999
refers to: RSAD2
refers to: 213797_at
t statistic: 6.74037503593869

COTL1
type: EnsemblDatabaseReference

OASL UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.21342073717987
p value: 0.0453064025096781
refers to: OASL
refers to: 205660_at
t statistic: 3.95410809030119

XAF1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.35147242364592
p value: 0.0159198556559643
refers to: 206133_at
refers to: XAF1
t statistic: 5.03022682896387

NCAPG2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.05373423697458
p value: 0.0173836477377635
refers to: 219588_s_at
refers to: NCAPG2
t statistic: 4.84618898198931

NR3C2 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.35194277929918
p value: 0.0189854573239046
refers to: NR3C2
refers to: 205259_at
t statistic: -4.65319436994328

RRM2
type: EnsemblDatabaseReference

(Assay) Human Non-progressor HIV Sample L004-CD8+ T cells
type: Assay
identifier: Human Non-progressor HIV Sample L004-CD8+ T cells
has participant: A-AFFY-33

SH2D1A UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17687336529127
p value: 0.00202228150982195
refers to: SH2D1A
refers to: 210116_at
t statistic: 10.0334738169803

BTG2
type: EnsemblDatabaseReference

IFI6
type: EnsemblDatabaseReference

DTL
type: EnsemblDatabaseReference

201664_at
type: EFO_0005072
part of: A-AFFY-33

HSPB11
type: EnsemblDatabaseReference

IGF1R
type: EnsemblDatabaseReference

209569_x_at
type: EFO_0005072
part of: A-AFFY-33

COTL1
type: EnsemblDatabaseReference

PAICS
type: EnsemblDatabaseReference

CISD1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.21829603069565
p value: 0.0102939653878772
refers to: CISD1
refers to: 218597_s_at
t statistic: 6.10900974459269

ZNF331 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -2.42974672589467
p value: 0.0127501496190635
refers to: ZNF331
refers to: 219228_at
t statistic: -5.50880777775453

220651_s_at
type: EFO_0005072
part of: A-AFFY-33

Homo sapiens
type: OBI_0100026

203787_at
type: EFO_0005072
part of: A-AFFY-33

D4S234E
type: EnsemblDatabaseReference

218349_s_at
type: EFO_0005072
part of: A-AFFY-33

NRIP1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.76359674252194
p value: 0.00552420902428497
refers to: NRIP1
refers to: 202599_s_at
t statistic: -7.7341000181318

RRM2
type: EnsemblDatabaseReference

TFDP1
type: EnsemblDatabaseReference

PAICS UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.12854386372948
p value: 0.0249809505194355
refers to: PAICS
refers to: 201013_s_at
t statistic: 4.2278131157355

FEN1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.13419437379793
p value: 0.0276337240902067
refers to: 204768_s_at
refers to: FEN1
t statistic: 4.06470380690837

BTG2
type: EnsemblDatabaseReference

IFI6
type: EnsemblDatabaseReference

219288_at
type: EFO_0005072
part of: A-AFFY-33

NUP43
type: EnsemblDatabaseReference

HSPB11
type: EnsemblDatabaseReference

SLC7A5 DOWN in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07781462000216
p value: 6.93354626489386E-4
refers to: SLC7A5
refers to: 201195_s_at
t statistic: -10.8486199695452

IFI27 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 3.23934745747039
p value: 0.0121042425572429
refers to: IFI27
refers to: 202411_at
t statistic: 5.59550822704065

(Assay) Human Uninfected Sample N071-CD8+ T cells
type: Assay
identifier: Human Uninfected Sample N071-CD8+ T cells
has participant: A-AFFY-33

221081_s_at
type: EFO_0005072
part of: A-AFFY-33

PAICS
type: EnsemblDatabaseReference

CASP1
type: EnsemblDatabaseReference

202371_at
type: EFO_0005072
part of: A-AFFY-33

Analysis of 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: MicroarrayDifferentialExpressionAnalysis

OAS1
type: EnsemblDatabaseReference

D4S234E
type: EnsemblDatabaseReference

TFDP1
type: EnsemblDatabaseReference

207001_x_at
type: EFO_0005072
part of: A-AFFY-33

IL7R
type: EnsemblDatabaseReference

ATP6V1D
type: EnsemblDatabaseReference

PDE4B
type: EnsemblDatabaseReference

MCM4 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.57600038539616
p value: 0.0109042038143428
refers to: 222036_s_at
refers to: MCM4
t statistic: 5.87191817751099

TPX2
type: EnsemblDatabaseReference

(Assay) Human Uninfected Sample N110-CD8+ T cells
type: Assay
identifier: Human Uninfected Sample N110-CD8+ T cells
has participant: A-AFFY-33

CENPU
type: EnsemblDatabaseReference

MRPL15 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.21767910553351
p value: 0.00399921184672931
refers to: MRPL15
refers to: 218027_at
t statistic: 7.99432778349019

IL7R
type: EnsemblDatabaseReference

213226_at
type: EFO_0005072
part of: A-AFFY-33

SCO2 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00922220478874
p value: 0.0373178378756308
refers to: SCO2
refers to: 205241_at
t statistic: 4.25843894037913

ATP6V1D
type: EnsemblDatabaseReference

PDE4B
type: EnsemblDatabaseReference

PIK3IP1 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02958573424458
p value: 0.00632164896157296
refers to: 221756_at
refers to: PIK3IP1
t statistic: -7.20644888431231

PTP4A1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08029046288202
p value: 0.0129830318664674
refers to: 200731_s_at
refers to: PTP4A1
t statistic: -5.45977602190381

CENPM
type: EnsemblDatabaseReference

202503_s_at
type: EFO_0005072
part of: A-AFFY-33

210046_s_at
type: EFO_0005072
part of: A-AFFY-33

ETNK1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.38969981063927
p value: 0.0499443657339954
refers to: ETNK1
refers to: 219017_at
t statistic: 3.32175806458939

RSAD2
type: EnsemblDatabaseReference

204162_at
type: EFO_0005072
part of: A-AFFY-33

CENPM
type: EnsemblDatabaseReference

TFDP1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0183873585984
p value: 0.0151844563840345
refers to: TFDP1
refers to: 212330_at
t statistic: 5.13354655675456

HMMR UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17687979633634
p value: 0.0393669449429209
refers to: HMMR
refers to: 207165_at
t statistic: 3.60346448216318

ZNF91
type: EnsemblDatabaseReference

AIM2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.19115277592414
p value: 0.00360210608157664
refers to: AIM2
refers to: 206513_at
t statistic: 8.1476698610368

MTHFD1
type: EnsemblDatabaseReference

SLC25A20 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.06619862423434
p value: 0.0173836477377635
refers to: SLC25A20
refers to: 203658_at
t statistic: 4.83095166827161

(Assay) Human Chronic HIV Sample C101-CD4+ T cells
type: Assay
identifier: Human Chronic HIV Sample C101-CD4+ T cells
has participant: A-AFFY-33

202687_s_at
type: EFO_0005072
part of: A-AFFY-33

BHLHE40
type: EnsemblDatabaseReference

RRM2 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 3.68048314372332
p value: 0.00360210608157664
refers to: RRM2
refers to: 209773_s_at
t statistic: 8.32652220462557

SOX4 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -2.28208678242729
p value: 0.0248918050548954
refers to: SOX4
refers to: 201417_at
t statistic: -4.23453935266341

209773_s_at
type: EFO_0005072
part of: A-AFFY-33

CASP7
type: EnsemblDatabaseReference

MTHFD1
type: EnsemblDatabaseReference

202705_at
type: EFO_0005072
part of: A-AFFY-33

HERC6
type: EnsemblDatabaseReference

GABARAPL1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00653487173878
p value: 0.0229378264348252
refers to: GABARAPL1
refers to: 211458_s_at
t statistic: -4.35356604629516

CUX1
type: EnsemblDatabaseReference

OSER1
type: EnsemblDatabaseReference

IGJ UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22261121018098
p value: 0.0417313940197724
refers to: 212592_at
refers to: IGJ
t statistic: 3.52259068395097

ISG15
type: EnsemblDatabaseReference

212723_at
type: EFO_0005072
part of: A-AFFY-33

SMC1A
type: EnsemblDatabaseReference

RRM1
type: EnsemblDatabaseReference

ZWINT UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.38867788624298
p value: 0.00617947320875934
refers to: ZWINT
refers to: 204026_s_at
t statistic: 7.31449500071263

MCM10 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00931623153099
p value: 0.0229378264348252
refers to: 220651_s_at
refers to: MCM10
t statistic: 4.35410062218808

BHLHE40 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0191439615233
p value: 0.0248849548449583
refers to: 201169_s_at
refers to: BHLHE40
t statistic: -4.24244241690741

206059_at
type: EFO_0005072
part of: A-AFFY-33

201005_at
type: EFO_0005072
part of: A-AFFY-33

IFIT3 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.27062091528528
p value: 0.0373178378756308
refers to: 204747_at
refers to: IFIT3
t statistic: 4.2586049692871

216379_x_at
type: EFO_0005072
part of: A-AFFY-33

OSER1
type: EnsemblDatabaseReference

ISG15
type: EnsemblDatabaseReference

CAND1
type: EnsemblDatabaseReference

HSPA1A
type: EnsemblDatabaseReference

FAM134B
type: EnsemblDatabaseReference

KLRB1
type: EnsemblDatabaseReference

204622_x_at
type: EFO_0005072
part of: A-AFFY-33

CKAP4
type: EnsemblDatabaseReference

AREG
type: EnsemblDatabaseReference

RGCC DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.24723536855597
p value: 0.0337265178485736
refers to: 218723_s_at
refers to: RGCC
t statistic: -4.42528208009354

FXYD5
type: EnsemblDatabaseReference

SH2D1A UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.16071207582357
p value: 0.0109042038143428
refers to: 211209_x_at
refers to: SH2D1A
t statistic: 5.84855214359464

CAND1
type: EnsemblDatabaseReference

HSPA1A
type: EnsemblDatabaseReference

FAM134B
type: EnsemblDatabaseReference

SMC2
type: EnsemblDatabaseReference

TAP1
type: EnsemblDatabaseReference

KLRB1
type: EnsemblDatabaseReference

BEX4 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10834966257201
p value: 0.0109469591885842
refers to: BEX4
refers to: 215440_s_at
t statistic: -6.10781442776942

218084_x_at
type: EFO_0005072
part of: A-AFFY-33

DDX60 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.26520122294168
p value: 0.00723774621160255
refers to: DDX60
refers to: 218986_s_at
t statistic: 6.65917260373057

SLC2A3
type: EnsemblDatabaseReference

208636_at
type: EFO_0005072
part of: A-AFFY-33

IFI44L
type: EnsemblDatabaseReference

208839_s_at
type: EFO_0005072
part of: A-AFFY-33

TAP1
type: EnsemblDatabaseReference

SMAD7 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.71004005340585
p value: 0.00487606242675006
refers to: SMAD7
refers to: 204790_at
t statistic: -6.48888496466085

HERC5 UP in 'chronic HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.77008807766352
p value: 4.51451780232215E-4
refers to: HERC5
refers to: 219863_at
t statistic: 10.1082391486131

NCBP1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.01029815006496
p value: 0.00617947320875934
refers to: 209520_s_at
refers to: NCBP1
t statistic: 7.32562481145815

ZBTB18 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.74621033295381
p value: 0.0384978989164841
refers to: 212774_at
refers to: ZBTB18
t statistic: -3.6499187044502

CDK1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.26868540542048
p value: 0.0364988375161742
refers to: CDK1
refers to: 210559_s_at
t statistic: 3.70694698821144

213060_s_at
type: EFO_0005072
part of: A-AFFY-33

JMJD6 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09870569097571
p value: 0.0411019414848028
refers to: JMJD6
refers to: 212722_s_at
t statistic: -3.53839945327044

201689_s_at
type: EFO_0005072
part of: A-AFFY-33

202086_at
type: EFO_0005072
part of: A-AFFY-33

ADA UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.11067359642059
p value: 0.0220466691125922
refers to: ADA
refers to: 216705_s_at
t statistic: 4.41473730697216

MCM10
type: EnsemblDatabaseReference

C3orf14 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.6936797631362
p value: 0.0117434276721458
refers to: C3orf14
refers to: 219288_at
t statistic: 5.63088670953007

212141_at
type: EFO_0005072
part of: A-AFFY-33

204642_at
type: EFO_0005072
part of: A-AFFY-33

PDE4B DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.54997922247983
p value: 0.00399921184672931
refers to: PDE4B
refers to: 203708_at
t statistic: -7.9721630585734

KLF9 DOWN in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09517157843065
p value: 0.00502267890096283
refers to: 203543_s_at
refers to: KLF9
t statistic: -8.54849134935371

PFKFB3 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.41710536035855
p value: 0.0129830318664674
refers to: 202464_s_at
refers to: PFKFB3
t statistic: -5.47260833726269

200783_s_at
type: EFO_0005072
part of: A-AFFY-33

202615_at
type: EFO_0005072
part of: A-AFFY-33

OAS2 UP in 'early HIV infection' vs 'uninfected' in 'CD4+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.14552496593177
p value: 0.0250064431945628
refers to: OAS2
refers to: 204972_at
t statistic: 4.59185945892499

SCML1 DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.46626040980559
p value: 0.0294947439034186
refers to: 218793_s_at
refers to: SCML1
t statistic: -3.97257278289587

MCM10
type: EnsemblDatabaseReference

GIMAP4
type: EnsemblDatabaseReference

IGJ
type: EnsemblDatabaseReference

PLSCR1 UP in 'chronic HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4711556953979
p value: 0.0364517920041129
refers to: PLSCR1
refers to: 202446_s_at
t statistic: 4.29311043862298

218400_at
type: EFO_0005072
part of: A-AFFY-33

KLRF1
type: EnsemblDatabaseReference

DDX60
type: EnsemblDatabaseReference

IFI44L UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.44127631280435
p value: 0.0157902107569389
refers to: IFI44L
refers to: 204439_at
t statistic: 5.05439622135079

201259_s_at
type: EFO_0005072
part of: A-AFFY-33

206332_s_at
type: EFO_0005072
part of: A-AFFY-33

OAS1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 2.10688635825579
p value: 0.00406759964933398
refers to: 205552_s_at
refers to: OAS1
t statistic: 7.91931438464036

218350_s_at
type: EFO_0005072
part of: A-AFFY-33

D4S234E DOWN in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08404293293256
p value: 0.0248918050548954
refers to: 209570_s_at
refers to: D4S234E
t statistic: -4.23668063517628

204510_at
type: EFO_0005072
part of: A-AFFY-33

GIMAP4
type: EnsemblDatabaseReference

IGJ
type: EnsemblDatabaseReference

(Assay) Human Chronic HIV Sample C138-CD8+ T cells
type: Assay
identifier: Human Chronic HIV Sample C138-CD8+ T cells
has participant: A-AFFY-33

MYL6B UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.49223483092558
p value: 0.0102939653878772
refers to: MYL6B
refers to: 204173_at
t statistic: 6.04688700410275

KIF15 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17912395195921
p value: 0.0393669449429209
refers to: KIF15
refers to: 219306_at
t statistic: 3.60493023904063

CX3CR1 UP in 'early HIV infection' vs 'uninfected' in 'CD8+ T cell'
type: IncreasedDifferentialExpressionRatio
fold change: 1.94619857758479
p value: 0.0331880804181242
refers to: CX3CR1
refers to: 205898_at
t statistic: 3.83134149039314

217755_at
type: EFO_0005072
part of: A-AFFY-33

MCM5
type: EnsemblDatabaseReference

201367_s_at
type: EFO_0005072
part of: A-AFFY-33