HR4
type: EnsemblDatabaseReference

GH3.3
type: EnsemblDatabaseReference

PGL5
type: EnsemblDatabaseReference

AT1G62480
type: EnsemblDatabaseReference

ATSUC7 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.6
p value: 0.0292054572279859
refers to: ATSUC7

AT2G04500
type: EnsemblDatabaseReference

RALFL27
type: EnsemblDatabaseReference

UCC3
type: EnsemblDatabaseReference

AT3G01345
type: EnsemblDatabaseReference

CRRSP4 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.5
p value: 0.0100700900174578
refers to: CRRSP4

ATSBT5.2 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0
p value: 2.38675101686619E-5
refers to: ATSBT5.2

AT1G76800 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2
p value: 0.0408278799076319
refers to: AT1G76800

BHLH129
type: EnsemblDatabaseReference

AT4G08990
type: EnsemblDatabaseReference

AT4G29450
type: EnsemblDatabaseReference

ATOCT3 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2
p value: 2.48258100073352E-5
refers to: ATOCT3

AT1G65500
type: EnsemblDatabaseReference

AtRLP7 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.6
p value: 0.0014337030176371
refers to: AtRLP7

AT1G21890 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -2.6
p value: 3.14372611946012E-5
refers to: AT1G21890

AT3G59480 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.5
p value: 4.46662137024526E-4
refers to: AT3G59480

AT1G32928
type: EnsemblDatabaseReference

AT5G18840
type: EnsemblDatabaseReference

ACS7 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2
p value: 0.00741186295613337
refers to: ACS7

ATGDU2 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1
p value: 0.0129547522496158
refers to: ATGDU2

AT3G14780
type: EnsemblDatabaseReference

AT4G38560
type: EnsemblDatabaseReference

ATEXPB3
type: EnsemblDatabaseReference

AT1G62770
type: EnsemblDatabaseReference

CYP81D8
type: EnsemblDatabaseReference

DOT1 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0
p value: 0.0171904645261578
refers to: DOT1

ATMES13 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3
p value: 0.016230099041774
refers to: ATMES13

ICS2
type: EnsemblDatabaseReference

AT1G62480 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4
p value: 7.54787214033666E-14
refers to: AT1G62480

AT1G48670 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.6
p value: 0.0237729840570424
refers to: AT1G48670

WRKY18
type: EnsemblDatabaseReference

AT4G28900
type: EnsemblDatabaseReference

AT2G24980
type: EnsemblDatabaseReference

AT2G37900
type: EnsemblDatabaseReference

AT1G26380
type: EnsemblDatabaseReference

DTXL2
type: EnsemblDatabaseReference

XBAT34
type: EnsemblDatabaseReference

AT4G08990 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.6
p value: 0.0454656370875963
refers to: AT4G08990

MIOX2 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 2.0
p value: 0.0316028360838677
refers to: MIOX2

MIOX4
type: EnsemblDatabaseReference

MDHAR
type: EnsemblDatabaseReference

AT1G66100 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0
p value: 0.0061858339290513
refers to: AT1G66100

AT1G14190
type: EnsemblDatabaseReference

AT4G12490
type: EnsemblDatabaseReference

UGT76E4
type: EnsemblDatabaseReference

ACS7
type: EnsemblDatabaseReference

AT1G14160
type: EnsemblDatabaseReference

AT2G41810
type: EnsemblDatabaseReference

PAD3
type: EnsemblDatabaseReference

AT1G26420
type: EnsemblDatabaseReference

AT2G17740
type: EnsemblDatabaseReference

AtSIP2 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.8
p value: 4.12252248886828E-21
refers to: AtSIP2

AT1G76800
type: EnsemblDatabaseReference

WAK1 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0
p value: 0.0408278799076319
refers to: WAK1

SUC1 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0
p value: 2.50118931589794E-6
refers to: SUC1

AT4G29450 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -4.1
p value: 0.0264334581752463
refers to: AT4G29450

(Sample) organism/Arabidopsis thaliana
type: Arabidopsis thaliana
property type: organism
property value: Arabidopsis thaliana

ATSBT5.2
type: EnsemblDatabaseReference

ATGDU2
type: EnsemblDatabaseReference

WRKY70
type: EnsemblDatabaseReference

AT3G18200
type: EnsemblDatabaseReference

AT2G37870
type: EnsemblDatabaseReference

AT4G08410
type: EnsemblDatabaseReference

GAD4
type: EnsemblDatabaseReference

AT2G41810 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2
p value: 0.0222625562408033
refers to: AT2G41810

AGL14 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3
p value: 0.0040318782534342
refers to: AGL14

CML11
type: EnsemblDatabaseReference

AT4G37220
type: EnsemblDatabaseReference

CYP81D8 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2
p value: 5.92327758222593E-5
refers to: CYP81D8

WAK1
type: EnsemblDatabaseReference

ATRL5
type: EnsemblDatabaseReference

SP1L5
type: EnsemblDatabaseReference

AT4G08400
type: EnsemblDatabaseReference

AT2G05160 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2
p value: 6.77726149713378E-5
refers to: AT2G05160

Analysis of 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: RNASeqDifferentialAnalysis

ATSUC7
type: EnsemblDatabaseReference

AT1G26390
type: EnsemblDatabaseReference

AT2G31860 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -2.6
p value: 0.045544671223458
refers to: AT2G31860

AT1G27020
type: EnsemblDatabaseReference

ATMES13
type: EnsemblDatabaseReference

AT4G32480
type: EnsemblDatabaseReference

AT5G24200
type: EnsemblDatabaseReference

MAKR4
type: EnsemblDatabaseReference

WRKY18 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2
p value: 6.35067948677544E-6
refers to: WRKY18

AT4G32480 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.6
p value: 0.0141593907291221
refers to: AT4G32480

AT5G18840 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 2.0
p value: 0.0052727876062791
refers to: AT5G18840

AT1G34520
type: EnsemblDatabaseReference

AT3G26760
type: EnsemblDatabaseReference

AT1G51890 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0
p value: 0.00384909697041233
refers to: AT1G51890

AT3G22540
type: EnsemblDatabaseReference

AGL14
type: EnsemblDatabaseReference

JAL22
type: EnsemblDatabaseReference

AT1G26420 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.00411818867172708
refers to: AT1G26420

AT1G48670
type: EnsemblDatabaseReference

AT1G66100
type: EnsemblDatabaseReference

AtRLP22
type: EnsemblDatabaseReference

HB-5
type: EnsemblDatabaseReference

ATGSTF7
type: EnsemblDatabaseReference

AT3G25190
type: EnsemblDatabaseReference

AT2G28990
type: EnsemblDatabaseReference

UVR3 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0
p value: 0.010305067222444
refers to: UVR3

AT1G61340
type: EnsemblDatabaseReference

AT3G46490
type: EnsemblDatabaseReference

AT4G08410 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2
p value: 4.43074895568512E-8
refers to: AT4G08410

AT3G29120 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -2.6
p value: 2.27716451124779E-9
refers to: AT3G29120

AtRLP24
type: EnsemblDatabaseReference

AT1G21890
type: EnsemblDatabaseReference

AT1G25400
type: EnsemblDatabaseReference

AT2G24980 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.5
p value: 5.46576527664408E-4
refers to: AT2G24980

MIOX4 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 3.3
p value: 0.00135249713585754
refers to: MIOX4

AT1G51890
type: EnsemblDatabaseReference

AT5G67430
type: EnsemblDatabaseReference

AT1G27670 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.4
p value: 0.00821268752291793
refers to: AT1G27670

DOT1
type: EnsemblDatabaseReference

HR4
type: EnsemblDatabaseReference

CYP705A20
type: EnsemblDatabaseReference

AT1G17300 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.7
p value: 2.83489626826032E-4
refers to: AT1G17300

AT1G11450 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1
p value: 0.0154094129610672
refers to: AT1G11450

GH3.3
type: EnsemblDatabaseReference

CYP82C4
type: EnsemblDatabaseReference

AT2G25150
type: EnsemblDatabaseReference

AT1G62480
type: EnsemblDatabaseReference

AT2G04500
type: EnsemblDatabaseReference

E-GEOD-42968
type: rnaseq mrna differential
RO_0002162: Arabidopsis thaliana
description: Rapamycin-sensitive transgenic Arabidopsis lines (BP12) expressing yeast FK506 Binding Protein12 (FKBP12) were developed. Inhibition of TOR in BP12 plants by rapamycin resulted in slower overall root, leaf and shoot growth and development leading to poor nutrient uptake and light energy utilization. Genetic and physiological studies together with RNA-Seq and metabolite analysis of TOR-suppressed lines revealed that TOR regulates development and lifespan in Arabidopsis by restructuring cell growth, carbon and nitrogen metabolism, gene expression, ribosomal RNA and protein synthesis. Arabidopsis WT (Col)and BP12-2 (TOR knockdown line) seedlings at 15 DAG were treated with rapamycin for 3 days by transferring from 0.5 MS medium to 0.5 MS+10 ug/ml rapamycin. Triplicate samples of rapamycin treated WT and BP12-2 seedlings were used for RNA-Seq analysis (Illumina Hiseq 2000). Paired-end alignments were obtained through aligning short reads onto the reference Arabidopsis Genome (TAIR9) using Bowtie. More than 80% of the reads mapped onto the genome. Htseq-count was used to count the reads from the Bowtie derived output files. Differential expressed genes were identified using edgeR. The FDR-corrected P value for differential expression was set to be <=0.05.
uses data from: http://identifiers.org/pubmed/23275579

RALFL27
type: EnsemblDatabaseReference

UVR3
type: EnsemblDatabaseReference

AT1G32928 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.6
p value: 0.0327121067777076
refers to: AT1G32928

AT3G26610
type: EnsemblDatabaseReference

TPS04 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 2.4
p value: 0.00794329366484087
refers to: TPS04

AT4G13710
type: EnsemblDatabaseReference

AT4G08990
type: EnsemblDatabaseReference

AT4G29450
type: EnsemblDatabaseReference

SUC1
type: EnsemblDatabaseReference

AT1G32928
type: EnsemblDatabaseReference

CYP705A20 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.7
p value: 6.56498126604257E-7
refers to: CYP705A20

AT3G04220
type: EnsemblDatabaseReference

AT1G27020 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4
p value: 0.030207163711
refers to: AT1G27020

AT2G19460
type: EnsemblDatabaseReference

DTXL2 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 3.1
p value: 0.0237729840570424
refers to: DTXL2

ATC UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0
p value: 4.23273822682799E-4
refers to: ATC

AT1G26380 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0
p value: 0.0358938656845825
refers to: AT1G26380

AT3G14780
type: EnsemblDatabaseReference

AtRLP24 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.7
p value: 0.0391990682587045
refers to: AtRLP24

ATEXPB3
type: EnsemblDatabaseReference

AT1G62770
type: EnsemblDatabaseReference

CML11 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 7.69483093522081E-4
refers to: CML11

AT4G13710 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0
p value: 0.00115773794210587
refers to: AT4G13710

WRKY18
type: EnsemblDatabaseReference

AT3G28540
type: EnsemblDatabaseReference

AT2G24980
type: EnsemblDatabaseReference

AT2G37900
type: EnsemblDatabaseReference

ATMES8 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.5
p value: 0.00610747506604372
refers to: ATMES8

AT4G01110
type: EnsemblDatabaseReference

XBAT34
type: EnsemblDatabaseReference

MIOX4
type: EnsemblDatabaseReference

HR4 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2
p value: 3.93842651600569E-7
refers to: HR4

AT4G08093
type: EnsemblDatabaseReference

AT1G11450
type: EnsemblDatabaseReference

ATEXPB3 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1
p value: 5.27223485260015E-6
refers to: ATEXPB3

AT4G12490
type: EnsemblDatabaseReference

(Sample) developmental stage/15-day old seedling
type: EFO_0000001
property type: developmental stage
property value: 15-day old seedling

UGT76E4
type: EnsemblDatabaseReference

LOG2
type: EnsemblDatabaseReference

ACS7
type: EnsemblDatabaseReference

AT2G41810
type: EnsemblDatabaseReference

AT3G26760 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3
p value: 1.47768992035869E-4
refers to: AT3G26760

AT1G17300
type: EnsemblDatabaseReference

AT2G17740
type: EnsemblDatabaseReference

ZEU1
type: EnsemblDatabaseReference

AT1G76800
type: EnsemblDatabaseReference

ERD5 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 2.7
p value: 2.98563511809618E-45
refers to: ERD5

AT1G63055
type: EnsemblDatabaseReference

ATSBT5.2
type: EnsemblDatabaseReference

LAC2 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0
p value: 0.00191963177209756
refers to: LAC2

ATGDU2
type: EnsemblDatabaseReference

AT4G08400 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0
p value: 2.29111870449467E-5
refers to: AT4G08400

AT2G19460 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.00821268752291793
refers to: AT2G19460

AT3G18200
type: EnsemblDatabaseReference

AT2G37870
type: EnsemblDatabaseReference

AT3G59250
type: EnsemblDatabaseReference

GAD4
type: EnsemblDatabaseReference

AT1G61340 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.0289384105130284
refers to: AT1G61340

AT1G34520 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -3.8
p value: 0.00150119787731495
refers to: AT1G34520

TPS04
type: EnsemblDatabaseReference

AT3G28420 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3
p value: 0.0108709695716197
refers to: AT3G28420

AT3G28420
type: EnsemblDatabaseReference

Arabidopsis thaliana
type: OBI_0100026

ATC
type: EnsemblDatabaseReference

JAL22 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -2.6
p value: 3.41911759795243E-8
refers to: JAL22

AT4G01110 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1
p value: 0.0237729840570424
refers to: AT4G01110

AT4G08400
type: EnsemblDatabaseReference

ATSUC7
type: EnsemblDatabaseReference

LAC2
type: EnsemblDatabaseReference

AT2G40250
type: EnsemblDatabaseReference

MDHAR UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0
p value: 0.0119041622785333
refers to: MDHAR

ERD5
type: EnsemblDatabaseReference

AT2G28990 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.4
p value: 1.47768992035869E-4
refers to: AT2G28990

AT2G05160
type: EnsemblDatabaseReference

AT1G21520 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2
p value: 2.74552202716326E-4
refers to: AT1G21520

WRKY70 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.3
p value: 2.60818900612021E-4
refers to: WRKY70

AtbZIP48 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -2.8
p value: 0.00247858106956537
refers to: AtbZIP48

RALFL27 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1
p value: 0.0259266172943112
refers to: RALFL27

AT4G11890 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.8
p value: 0.0473836178554137
refers to: AT4G11890

AT1G63055 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -2.0
p value: 0.00557750036602121
refers to: AT1G63055

AT3G53980 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3
p value: 1.43739864474358E-9
refers to: AT3G53980

AT5G24200
type: EnsemblDatabaseReference

AT2G04500 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.9
p value: 6.86350103167416E-4
refers to: AT2G04500

AT1G26380
type: EnsemblDatabaseReference

(Assay) SRR634970
type: Assay

XBAT34 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4
p value: 1.57305415693188E-4
refers to: XBAT34

AT4G12490 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.9
p value: 6.92325121238583E-8
refers to: AT4G12490

AT3G26760
type: EnsemblDatabaseReference

MAKR4 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2
p value: 0.0237729840570424
refers to: MAKR4

AT3G22540
type: EnsemblDatabaseReference

AT1G51820 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0
p value: 5.69799514279276E-4
refers to: AT1G51820

AT3G25190 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1
p value: 0.0071422323506018
refers to: AT3G25190

ZEU1 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4
p value: 1.71483369601542E-4
refers to: ZEU1

(Assay) SRR634972
type: Assay

AT1G66100
type: EnsemblDatabaseReference

AT5G24200 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 2.0
p value: 0.00170092969678844
refers to: AT5G24200

AT2G17740 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.9
p value: 0.00298246525983557
refers to: AT2G17740

AtRLP22
type: EnsemblDatabaseReference

HB-5
type: EnsemblDatabaseReference

AtSIP2
type: EnsemblDatabaseReference

ATGSTF7
type: EnsemblDatabaseReference

AT3G53980
type: EnsemblDatabaseReference

AT2G28990
type: EnsemblDatabaseReference

(Sample) genotype/Rapamycin-sensitive TOR knockdown (BP12-2)
type: EFO_0000001
property type: genotype
property value: Rapamycin-sensitive TOR knockdown (BP12-2)

AT1G32920
type: EnsemblDatabaseReference

AT3G29120
type: EnsemblDatabaseReference

AT2G31860
type: EnsemblDatabaseReference

ATOCT3
type: EnsemblDatabaseReference

AT1G73805
type: EnsemblDatabaseReference

AtbZIP48
type: EnsemblDatabaseReference

AT4G11890
type: EnsemblDatabaseReference

AT3G46490 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1
p value: 4.70889729631865E-4
refers to: AT3G46490

ICS2 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2
p value: 0.00685952259586537
refers to: ICS2

AtRLP7
type: EnsemblDatabaseReference

AT2G39320
type: EnsemblDatabaseReference

AT1G03700
type: EnsemblDatabaseReference

AT1G14160 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1
p value: 0.0347638659830431
refers to: AT1G14160

AT1G51890
type: EnsemblDatabaseReference

AT1G21520
type: EnsemblDatabaseReference

AT3G59480
type: EnsemblDatabaseReference

(Factor value) GENOTYPE/Rapamycin-sensitive TOR knockdown (BP12-2)
type: EFO_0000001
property type: GENOTYPE
property value: Rapamycin-sensitive TOR knockdown (BP12-2)

AT3G28540 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.0120264238343625
refers to: AT3G28540

BAP1
type: EnsemblDatabaseReference

AT3G04220 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4
p value: 0.0424848695704218
refers to: AT3G04220

CYP705A20
type: EnsemblDatabaseReference

CYP82C4
type: EnsemblDatabaseReference

AT4G38560
type: EnsemblDatabaseReference

RHS15
type: EnsemblDatabaseReference

ATMES8
type: EnsemblDatabaseReference

AT4G27590
type: EnsemblDatabaseReference

UVR3
type: EnsemblDatabaseReference

AT2G37870 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.4
p value: 8.27038413785516E-6
refers to: AT2G37870

AT3G26610
type: EnsemblDatabaseReference

AT4G13710
type: EnsemblDatabaseReference

AT1G62770 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3
p value: 0.0212955084049798
refers to: AT1G62770

AT1G51820
type: EnsemblDatabaseReference

SUC1
type: EnsemblDatabaseReference

AT1G27670
type: EnsemblDatabaseReference

AT3G04220
type: EnsemblDatabaseReference

BHLH129 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.6
p value: 0.0411730380912304
refers to: BHLH129

(Assay) SRR634973
type: Assay

CRRSP4
type: EnsemblDatabaseReference

AT2G19460
type: EnsemblDatabaseReference

AT3G22540 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -2.3
p value: 7.94999328999848E-4
refers to: AT3G22540

AT1G26420
type: EnsemblDatabaseReference

AT2G40250 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 2.8
p value: 1.919183400382E-5
refers to: AT2G40250

MIOX2
type: EnsemblDatabaseReference

AT2G44370
type: EnsemblDatabaseReference

AT4G27590 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 2.1
p value: 5.19851239940979E-5
refers to: AT4G27590

AT4G28900 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0
p value: 0.0293147087396688
refers to: AT4G28900

PGL5
type: EnsemblDatabaseReference

AT3G28540
type: EnsemblDatabaseReference

AT1G26390 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.0281586665361933
refers to: AT1G26390

UCC3
type: EnsemblDatabaseReference

AT3G01345 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.0011653832707759
refers to: AT3G01345

AT4G01110
type: EnsemblDatabaseReference

GH3.3 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0
p value: 0.00108307550292524
refers to: GH3.3

AT3G01345
type: EnsemblDatabaseReference

HB-5 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.7
p value: 0.00211302633272011
refers to: HB-5

AT4G08093
type: EnsemblDatabaseReference

AT1G11450
type: EnsemblDatabaseReference

BHLH129
type: EnsemblDatabaseReference

LOG2 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.7
p value: 0.00325844077309792
refers to: LOG2

CYP82C4 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -2.6
p value: 2.79680393787734E-8
refers to: CYP82C4

LOG2
type: EnsemblDatabaseReference

AT1G65500
type: EnsemblDatabaseReference

AT1G17300
type: EnsemblDatabaseReference

AT5G18840
type: EnsemblDatabaseReference

UCC3 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.6
p value: 2.14647966417728E-6
refers to: UCC3

ZEU1
type: EnsemblDatabaseReference

AT4G38560 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2
p value: 0.0100700900174578
refers to: AT4G38560

AT2G39320 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 2.9
p value: 0.0032359383788399
refers to: AT2G39320

AT1G26390
type: EnsemblDatabaseReference

AT3G26610 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -2.8
p value: 0.00216672762978376
refers to: AT3G26610

AT1G63055
type: EnsemblDatabaseReference

AT3G14780 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0
p value: 0.00392006620422857
refers to: AT3G14780

ATMES13
type: EnsemblDatabaseReference

ATGSTF7 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.3
p value: 7.57741561533718E-6
refers to: ATGSTF7

AT1G03700 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.4
p value: 0.0222625562408033
refers to: AT1G03700

CYP81D8
type: EnsemblDatabaseReference

ICS2
type: EnsemblDatabaseReference

(Sample) genotype/wild type genotype
type: EFO_0000001
property type: genotype
property value: wild type genotype

AT4G28900
type: EnsemblDatabaseReference

AT3G59250
type: EnsemblDatabaseReference

DTXL2
type: EnsemblDatabaseReference

RHS15 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -2.3
p value: 8.27038413785516E-6
refers to: RHS15

TPS04
type: EnsemblDatabaseReference

AT3G28420
type: EnsemblDatabaseReference

MDHAR
type: EnsemblDatabaseReference

AT3G18200 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2
p value: 0.0196826187189745
refers to: AT3G18200

AT1G25400 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 7.53571147483189E-4
refers to: AT1G25400

(Assay) SRR634971
type: Assay

AT1G14190
type: EnsemblDatabaseReference

ATC
type: EnsemblDatabaseReference

ATRL5 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.6
p value: 0.0317230082877098
refers to: ATRL5

(Factor value) GENOTYPE/wild type genotype
type: EFO_0000001
property type: GENOTYPE
property value: wild type genotype

AT1G14160
type: EnsemblDatabaseReference

AT4G08093 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -5.2
p value: 0.00115773794210587
refers to: AT4G08093

LAC2
type: EnsemblDatabaseReference

PAD3 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.6
p value: 9.87916460719094E-4
refers to: PAD3

PAD3
type: EnsemblDatabaseReference

AT2G40250
type: EnsemblDatabaseReference

ERD5
type: EnsemblDatabaseReference

AtRLP22 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.0470513271498664
refers to: AtRLP22

AT2G05160
type: EnsemblDatabaseReference

(Sample) ecotype/Col-0
type: EFO_0005148
property type: ecotype
property value: Col-0

AT1G73805 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4
p value: 0.00587442244069743
refers to: AT1G73805

AT5G67430 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.4
p value: 2.60818900612021E-4
refers to: AT5G67430

WRKY70
type: EnsemblDatabaseReference

AT4G08410
type: EnsemblDatabaseReference

BAP1 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.0315688510213919
refers to: BAP1

UGT76E4 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2
p value: 8.60541009946216E-4
refers to: UGT76E4

AT2G25150
type: EnsemblDatabaseReference

CML11
type: EnsemblDatabaseReference

AT4G37220
type: EnsemblDatabaseReference

AT3G59250 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2
p value: 0.0251814823933489
refers to: AT3G59250

AtSIP2
type: EnsemblDatabaseReference

WAK1
type: EnsemblDatabaseReference

ATRL5
type: EnsemblDatabaseReference

SP1L5
type: EnsemblDatabaseReference

AT3G53980
type: EnsemblDatabaseReference

AT1G14190 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0
p value: 0.00545490352259666
refers to: AT1G14190

AT1G27020
type: EnsemblDatabaseReference

AT1G32920
type: EnsemblDatabaseReference

AT3G29120
type: EnsemblDatabaseReference

AT2G31860
type: EnsemblDatabaseReference

AT1G65500 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.5
p value: 0.0155788742035185
refers to: AT1G65500

GAD4 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.6
p value: 1.76450393272984E-4
refers to: GAD4

ATOCT3
type: EnsemblDatabaseReference

AT2G25150 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3
p value: 0.0113107867220117
refers to: AT2G25150

AT1G73805
type: EnsemblDatabaseReference

AtbZIP48
type: EnsemblDatabaseReference

AT4G11890
type: EnsemblDatabaseReference

SP1L5 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.8
p value: 6.86350103167416E-4
refers to: SP1L5

AT2G37900 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1
p value: 0.0132922535662657
refers to: AT2G37900

AtRLP7
type: EnsemblDatabaseReference

AT2G39320
type: EnsemblDatabaseReference

AT1G03700
type: EnsemblDatabaseReference

AT4G32480
type: EnsemblDatabaseReference

AT1G21520
type: EnsemblDatabaseReference

MAKR4
type: EnsemblDatabaseReference

AT3G59480
type: EnsemblDatabaseReference

AT1G34520
type: EnsemblDatabaseReference

BAP1
type: EnsemblDatabaseReference

AGL14
type: EnsemblDatabaseReference

RHS15
type: EnsemblDatabaseReference

JAL22
type: EnsemblDatabaseReference

ATMES8
type: EnsemblDatabaseReference

AT4G37220 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.7
p value: 0.0013228899651176
refers to: AT4G37220

AT4G27590
type: EnsemblDatabaseReference

PGL5 DOWN in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2
p value: 0.0174904752255594
refers to: PGL5

AT1G48670
type: EnsemblDatabaseReference

(Assay) SRR634974
type: Assay

AT3G25190
type: EnsemblDatabaseReference

AT1G51820
type: EnsemblDatabaseReference

AT1G61340
type: EnsemblDatabaseReference

AT3G46490
type: EnsemblDatabaseReference

AT1G27670
type: EnsemblDatabaseReference

AtRLP24
type: EnsemblDatabaseReference

(Assay) SRR634969
type: Assay

AT1G32920 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.0308536661090837
refers to: AT1G32920

CRRSP4
type: EnsemblDatabaseReference

AT1G21890
type: EnsemblDatabaseReference

AT1G25400
type: EnsemblDatabaseReference

MIOX2
type: EnsemblDatabaseReference

AT2G44370
type: EnsemblDatabaseReference

AT2G44370 UP in 'Rapamycin-sensitive TOR knockdown (BP12-2)' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4
p value: 0.0422978803697254
refers to: AT2G44370

AT5G67430
type: EnsemblDatabaseReference

DOT1
type: EnsemblDatabaseReference