SPP2
type: EnsemblDatabaseReference

GRMZM2G052571
type: EnsemblDatabaseReference

GRMZM2G181227
type: EnsemblDatabaseReference

(Assay) GSM684667
type: Assay
has participant: A-AFFY-77

GRMZM2G366910
type: EnsemblDatabaseReference

GRMZM2G453805
type: EnsemblDatabaseReference

GRMZM2G181236 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.3
p value: 5.09196908371168E-4
refers to: GRMZM2G181236
refers to: Zm.15532.1.S1_at
t statistic: 19.5656435446305

GRMZM2G106177
type: EnsemblDatabaseReference

Zm.13228.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

Zm.8610.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G427815
type: EnsemblDatabaseReference

GRMZM2G132212
type: EnsemblDatabaseReference

GRMZM2G124815 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.5
p value: 0.00495408199710729
refers to: Zm.14677.1.S1_at
refers to: GRMZM2G124815
t statistic: 9.12757921578338

(Sample) infect/Phytophthora cinnamomi
type: EFO_0000001
property type: infect
property value: Phytophthora cinnamomi

Zm.17613.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM5G874955
type: EnsemblDatabaseReference

GRMZM2G175076
type: EnsemblDatabaseReference

Zm.9486.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

(Assay) GSM684674
type: Assay
has participant: A-AFFY-77

GRMZM2G402631 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.9
p value: 0.035086678200864
refers to: GRMZM2G402631
refers to: Zm.6659.1.A1_at
t statistic: 5.60036243276061

GRMZM2G108207
type: EnsemblDatabaseReference

GRMZM2G025105 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4
p value: 0.0129755258205981
refers to: GRMZM2G025105
refers to: Zm.10101.1.A1_at
t statistic: 7.03772394667902

GRMZM2G349749
type: EnsemblDatabaseReference

GRMZM2G040750 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.0416373233910435
refers to: GRMZM2G040750
refers to: Zm.1995.1.S1_at
t statistic: 5.3109989698519

Zm.8525.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G108207 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.00888291709475534
refers to: GRMZM2G108207
refers to: Zm.11803.1.A1_at
t statistic: 7.8444840096183

GRMZM5G838098
type: EnsemblDatabaseReference

Zm.1085.1.A1_a_at
type: EFO_0005072
part of: A-AFFY-77

Zm.539.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G005954
type: EnsemblDatabaseReference

Zm.1450.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G072529 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.0
p value: 0.00381110554152077
refers to: Zm.8714.1.A1_at
refers to: GRMZM2G072529
t statistic: 9.95360247298735

GRMZM2G312201
type: EnsemblDatabaseReference

Zm.2707.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G025105
type: EnsemblDatabaseReference

GRMZM2G103342
type: EnsemblDatabaseReference

GRMZM2G366910
type: EnsemblDatabaseReference

Zm.11924.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G037452
type: EnsemblDatabaseReference

Zm.15532.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G354909
type: EnsemblDatabaseReference

GRMZM2G137409 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.00357052989269352
refers to: Zm.10841.1.A1_at
refers to: GRMZM2G137409
t statistic: 10.1910702269464

GRMZM2G450233
type: EnsemblDatabaseReference

GRMZM2G453805 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.9
p value: 0.00246808467061549
refers to: GRMZM2G453805
refers to: Zm.1085.1.A1_a_at
t statistic: 11.3311282780924

GRMZM2G028556
type: EnsemblDatabaseReference

Zm.2301.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G027107
type: EnsemblDatabaseReference

Zm.14677.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

Zm.11803.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G053206
type: EnsemblDatabaseReference

Zm.6659.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G092474
type: EnsemblDatabaseReference

GRMZM2G052571 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.3
p value: 0.0179622697789914
refers to: GRMZM2G052571
refers to: Zm.10134.1.A1_at
t statistic: 6.5276232109767

(Sample) time/24
type: EFO_0000001
property type: time
property value: 24

GRMZM2G120320
type: EnsemblDatabaseReference

GRMZM2G125196
type: EnsemblDatabaseReference

GRMZM2G028556 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0
p value: 0.0485465164379209
refers to: GRMZM2G028556
refers to: Zm.246.1.A1_at
t statistic: 5.10168919262361

Zm.1419.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM5G874955 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.9
p value: 0.00416999845022935
refers to: GRMZM5G874955
refers to: Zm.16538.1.S1_at
t statistic: 9.51925072910533

Zm.17181.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G118172 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.4
p value: 0.00489528590777846
refers to: Zm.9644.1.A1_at
refers to: GRMZM2G118172
t statistic: 9.1853630133588

(Assay) GSM684673
type: Assay
has participant: A-AFFY-77

Zm.10101.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G011523
type: EnsemblDatabaseReference

GRMZM2G005954 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2
p value: 0.0152012524604035
refers to: GRMZM2G005954
refers to: Zm.3225.1.S1_at
t statistic: 6.76782366118444

GRMZM2G354909 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.0
p value: 0.00144108755781658
refers to: GRMZM2G354909
refers to: Zm.9554.1.A1_at
t statistic: 13.5702139300424

Analysis of 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: MicroarrayDifferentialExpressionAnalysis

(Factor value) TIME/24
type: EFO_0000001
property type: TIME
property value: 24

GRMZM2G420715 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.3
p value: 0.0464945288324636
refers to: GRMZM2G420715
refers to: Zm.1663.1.A1_at
t statistic: 5.15988192530088

GRMZM2G127328
type: EnsemblDatabaseReference

Zm.17271.6.S1_x_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G044383 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.8
p value: 0.0127490001769279
refers to: GRMZM2G044383
refers to: Zm.864.1.S1_at
t statistic: 7.11533877596062

GRMZM2G170017
type: EnsemblDatabaseReference

GRMZM2G074743
type: EnsemblDatabaseReference

GRMZM2G450498
type: EnsemblDatabaseReference

Zm.10167.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G402631
type: EnsemblDatabaseReference

SPP2
type: EnsemblDatabaseReference

GRMZM2G052571
type: EnsemblDatabaseReference

GRMZM2G181227
type: EnsemblDatabaseReference

GRMZM2G127328 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0
p value: 0.0129755258205981
refers to: GRMZM2G127328
refers to: Zm.13228.1.S1_at
t statistic: 7.05634205597815

GRMZM2G106177
type: EnsemblDatabaseReference

Zm.7654.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

Zm.8714.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G181236
type: EnsemblDatabaseReference

Zm.7909.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G156877
type: EnsemblDatabaseReference

GRMZM2G427815
type: EnsemblDatabaseReference

Zm.246.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

Zm.4213.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G317614
type: EnsemblDatabaseReference

ZmAffx.1198.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

Zm.9554.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G420715
type: EnsemblDatabaseReference

Zm.864.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G175076 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.5
p value: 0.00180475018001404
refers to: GRMZM2G175076
refers to: Zm.4213.1.A1_at
t statistic: 12.7546168229254

GRMZM5G874955
type: EnsemblDatabaseReference

(Assay) GSM684669
type: Assay
has participant: A-AFFY-77

(Factor value) INFECT/mock infected
type: EFO_0001461
property type: INFECT
property value: mock infected

GRMZM2G145461
type: EnsemblDatabaseReference

GRMZM2G427815 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.00775060140291946
refers to: Zm.2707.1.S1_at
refers to: GRMZM2G427815
t statistic: 8.13053612441481

Zm.12227.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G166639
type: EnsemblDatabaseReference

GRMZM2G027198
type: EnsemblDatabaseReference

GRMZM2G175076
type: EnsemblDatabaseReference

GRMZM2G170017 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 3.2
p value: 5.55063934657423E-5
refers to: Zm.8610.1.A1_at
refers to: GRMZM2G170017
t statistic: 32.6470575065652

Zm.10304.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G349749
type: EnsemblDatabaseReference

GRMZM2G161521
type: EnsemblDatabaseReference

Zm.1995.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

(Factor value) TIME/6
type: EFO_0000001
property type: TIME
property value: 6

GRMZM2G312201 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.9
p value: 0.00136511414542804
refers to: Zm.10304.1.S1_at
refers to: GRMZM2G312201
t statistic: 14.1262925003791

Zm.6023.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G032856
type: EnsemblDatabaseReference

GRMZM2G181227 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.5
p value: 1.22867593164673E-4
refers to: GRMZM2G181227
refers to: Zm.9486.1.A1_at
t statistic: 25.9600383586227

GRMZM2G428391
type: EnsemblDatabaseReference

GRMZM2G044383
type: EnsemblDatabaseReference

GRMZM2G125196 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2
p value: 0.0355795844131184
refers to: GRMZM2G125196
refers to: Zm.5748.1.A1_at
t statistic: 5.56503231859519

GRMZM2G156877 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.0
p value: 0.0392587256575811
refers to: GRMZM2G156877
refers to: Zm.539.1.A1_at
t statistic: 5.43599308564109

GRMZM2G312201
type: EnsemblDatabaseReference

GRMZM2G124815
type: EnsemblDatabaseReference

GRMZM2G132212 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2
p value: 0.0013721442875759
refers to: GRMZM2G132212
refers to: Zm.11950.1.A1_at
t statistic: 13.8825859714781

Zm.8470.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G449094
type: EnsemblDatabaseReference

GRMZM2G118172
type: EnsemblDatabaseReference

GRMZM2G161521 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.2
p value: 0.00185613477151883
refers to: Zm.1450.1.S1_at
refers to: GRMZM2G161521
t statistic: 12.4803874154768

(Assay) GSM684668
type: Assay
has participant: A-AFFY-77

GRMZM2G127418
type: EnsemblDatabaseReference

GRMZM2G037452
type: EnsemblDatabaseReference

GRMZM2G103342 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 3.0
p value: 7.06001825387337E-4
refers to: GRMZM2G103342
refers to: Zm.2136.1.S1_at
t statistic: 17.3331147696428

GRMZM2G145461 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.4
p value: 0.00297221325207794
refers to: GRMZM2G145461
refers to: Zm.847.1.S1_at
t statistic: 10.7551328216689

GRMZM2G450233
type: EnsemblDatabaseReference

GRMZM2G450233 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.0499677092612629
refers to: GRMZM2G450233
refers to: Zm.11214.1.S1_at
t statistic: 5.04957345247448

Zm.5748.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G040750
type: EnsemblDatabaseReference

GRMZM2G027198 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.3
p value: 0.0105875807244984
refers to: Zm.8743.1.A1_at
refers to: GRMZM2G027198
t statistic: 7.48072126868526

Zm.8743.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G028556
type: EnsemblDatabaseReference

GRMZM2G453805
type: EnsemblDatabaseReference

Zm.10134.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G166639
type: EnsemblDatabaseReference

GRMZM2G027107 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.0129755258205981
refers to: GRMZM2G027107
refers to: Zm.17613.1.A1_at
t statistic: 7.04925209140765

Zm.9851.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

Zm.11950.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G092474
type: EnsemblDatabaseReference

GRMZM2G044481 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 3.3
p value: 0.00542256861894223
refers to: GRMZM2G044481
refers to: ZmAffx.12.1.S1_at
t statistic: 8.91320031721492

GRMZM2G132212
type: EnsemblDatabaseReference

AC207043.3_FG002
type: EnsemblDatabaseReference

Zm.2136.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G120320 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0
p value: 0.00298403255718245
refers to: GRMZM2G120320
refers to: Zm.16992.1.A1_at
t statistic: 10.675038470518

GRMZM2G120320
type: EnsemblDatabaseReference

GRMZM2G137409
type: EnsemblDatabaseReference

GRMZM2G106177 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.5
p value: 0.00473039871643911
refers to: Zm.7654.1.A1_at
refers to: GRMZM2G106177
t statistic: 9.27831605519373

GRMZM2G044383
type: EnsemblDatabaseReference

GRMZM2G011523 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.8
p value: 0.0102527821929011
refers to: GRMZM2G011523
refers to: Zm.17271.6.S1_x_at
t statistic: 7.56513661519882

GRMZM2G366910 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 3.2
p value: 0.00590567689893458
refers to: Zm.9297.1.A1_at
refers to: GRMZM2G366910
t statistic: 8.69808847823082

(Factor value) INFECT/Phytophthora cinnamomi
type: EFO_0000001
property type: INFECT
property value: Phytophthora cinnamomi

GRMZM2G092474 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.3
p value: 0.00698846988576042
refers to: ZmAffx.1198.1.A1_at
refers to: GRMZM2G092474
t statistic: 8.33015706581485

(Assay) GSM684664
type: Assay
has participant: A-AFFY-77

GRMZM2G108207
type: EnsemblDatabaseReference

GRMZM2G072529
type: EnsemblDatabaseReference

GRMZM2G166639 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.6
p value: 0.00185613477151883
refers to: GRMZM2G166639
refers to: Zm.7909.1.A1_at
t statistic: 12.4130925066782

Zm.11214.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G349749 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4
p value: 0.00542256861894223
refers to: GRMZM2G349749
refers to: Zm.1601.1.S1_at
t statistic: 8.88221617758567

Zm.16538.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM5G838098
type: EnsemblDatabaseReference

GRMZM2G005954
type: EnsemblDatabaseReference

Zm.16992.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G127328
type: EnsemblDatabaseReference

(Assay) GSM684665
type: Assay
has participant: A-AFFY-77

GRMZM2G170017
type: EnsemblDatabaseReference

Zm.10841.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

Zm.627.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM5G838098 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.5
p value: 0.00193831455312682
refers to: Zm.8525.1.A1_at
refers to: GRMZM5G838098
t statistic: 12.0852414173282

GRMZM2G025105
type: EnsemblDatabaseReference

GRMZM2G103342
type: EnsemblDatabaseReference

GRMZM2G450498 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.7
p value: 0.0025180421232901
refers to: GRMZM2G450498
refers to: Zm.17181.1.S1_at
t statistic: 11.1239513829913

Zm.9297.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

AC207043.3_FG002 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2
p value: 0.00698846988576042
refers to: AC207043.3_FG002
refers to: Zm.16973.1.S1_at
t statistic: 8.32877460251841

GRMZM2G354909
type: EnsemblDatabaseReference

Zm.1601.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G074743 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.5
p value: 0.00407792194915172
refers to: GRMZM2G074743
refers to: Zm.6023.1.S1_at
t statistic: 9.7911554833014

GRMZM2G044481
type: EnsemblDatabaseReference

GRMZM2G181236
type: EnsemblDatabaseReference

GRMZM2G027107
type: EnsemblDatabaseReference

GRMZM2G137409
type: EnsemblDatabaseReference

GRMZM2G156877
type: EnsemblDatabaseReference

Zm.16973.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G127418 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.1
p value: 0.00504253854326114
refers to: GRMZM2G127418
refers to: Zm.2301.1.A1_at
t statistic: 9.06259586102535

GRMZM2G317614
type: EnsemblDatabaseReference

GRMZM2G053206
type: EnsemblDatabaseReference

GRMZM2G428391 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.3
p value: 0.00213578663353731
refers to: GRMZM2G428391
refers to: Zm.12227.1.S1_at
t statistic: 11.7881167246049

SPP2 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.00864526456881244
refers to: SPP2
refers to: Zm.8470.1.S1_at
t statistic: 7.9571532146347

GRMZM2G420715
type: EnsemblDatabaseReference

GRMZM2G317614 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2
p value: 0.0283278675515983
refers to: GRMZM2G317614
refers to: Zm.9851.1.A1_at
t statistic: 5.87679554684166

(Sample) infect/mock infected
type: EFO_0001461
property type: infect
property value: mock infected

GRMZM2G072529
type: EnsemblDatabaseReference

Zm.3225.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G145461
type: EnsemblDatabaseReference

GRMZM2G037452 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 2.3
p value: 0.00896530461897163
refers to: GRMZM2G037452
refers to: Zm.10167.1.A1_at
t statistic: 7.78551068072085

GRMZM2G027198
type: EnsemblDatabaseReference

GRMZM2G032856 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.9
p value: 0.0335954068839844
refers to: GRMZM2G032856
refers to: Zm.627.1.A1_at
t statistic: 5.67747613555502

GRMZM2G125196
type: EnsemblDatabaseReference

E-GEOD-27626
type: microarray 1colour mrna differential
description: Phytophthora cinnamomi is a devastating soil-borne oomycete with a very broad host range however there remains a major gap in the understanding of plant resistance responses to the pathogen, furthermore, necrotrophic plant-pathogen interactions, particularly those of root pathogens, remain poorly understood. Zea mays exhibits non-host resistance to the pathogen and has been well characterised as a model species. Using the maize Affymetrix GeneChip array we conducted genome-wide gene expression profiling to elucidate the defence genes and pathways which are induced in the root tissue of a resistant plant species to the pathogen. Each experimental repeat consisted of 60 Z. mays seedlings in total: 15 control and 15 inoculated plants per timepoint. Root tissue was harvested and snap frozen in liquid nitrogen and stored at -80ÃÂ°C until required. All harvested root tissue within each treatment group at each time point was pooled for total RNA extractions. Three technical repeats were conducted resulting in a total of 180 sampled plants and 12 samples of purified total RNA for microarray analysis. Total RNA was labelled, hybridised and scanned using standard Affymetrix protocols and resulted in 12 .CEL files. Raw data was processed using Partek Genomics Suite software and normalised using Robust Multi-Chip Average Software. Differentially expressed genes were defined by a fold difference of >1.5 (log2) and those with a P value cutoff of <0.05 were considered statistically significant.
uses data from: http://identifiers.org/pubmed/23430324

(Sample) time/6
type: EFO_0000001
property type: time
property value: 6

GRMZM2G161521
type: EnsemblDatabaseReference

(Assay) GSM684670
type: Assay
has participant: A-AFFY-77

(Assay) GSM684666
type: Assay
has participant: A-AFFY-77

Zm.1663.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

(Assay) GSM684671
type: Assay
has participant: A-AFFY-77

GRMZM2G032856
type: EnsemblDatabaseReference

(Sample) organism part/root
type: EFO_0000989
property type: organism part
property value: root

Zm.847.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

Zm.9644.1.A1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G428391
type: EnsemblDatabaseReference

GRMZM2G449094 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.5
p value: 0.00193831455312682
refers to: Zm.11924.1.A1_at
refers to: GRMZM2G449094
t statistic: 12.1194062335789

GRMZM2G053206 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1
p value: 0.00709002040027949
refers to: GRMZM2G053206
refers to: Zm.1419.1.S1_at
t statistic: 8.27995471204967

(Assay) GSM684672
type: Assay
has participant: A-AFFY-77

A-AFFY-77
type: EFO_0000269

GRMZM2G124815
type: EnsemblDatabaseReference

GRMZM2G011523
type: EnsemblDatabaseReference

AC207043.3_FG002
type: EnsemblDatabaseReference

GRMZM2G044481
type: EnsemblDatabaseReference

GRMZM2G449094
type: EnsemblDatabaseReference

GRMZM2G127418
type: EnsemblDatabaseReference

GRMZM2G118172
type: EnsemblDatabaseReference

(Assay) GSM684675
type: Assay
has participant: A-AFFY-77

(Sample) organism/Zea mays
type: EFO_0000001
property type: organism
property value: Zea mays

ZmAffx.12.1.S1_at
type: EFO_0005072
part of: A-AFFY-77

GRMZM2G074743
type: EnsemblDatabaseReference

GRMZM2G450498
type: EnsemblDatabaseReference

GRMZM2G040750
type: EnsemblDatabaseReference

GRMZM2G402631
type: EnsemblDatabaseReference