GRMZM2G181236 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G124815 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G402631 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G025105 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G040750 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G108207 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G072529 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G137409 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G453805 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G052571 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G028556 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM5G874955 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G118172 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G005954 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G354909 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
Analysis of 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G420715 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G044383 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G127328 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G175076 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G427815 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G170017 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G312201 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G181227 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G125196 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G156877 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G132212 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G161521 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G103342 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G145461 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G450233 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G027198 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G027107 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G044481 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G120320 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G106177 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G011523 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G366910 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
(Factor value) INFECT/Phytophthora cinnamomi
GRMZM2G092474 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G166639 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G349749 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM5G838098 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G450498 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
AC207043.3_FG002 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G074743 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G127418 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G428391 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
SPP2 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G317614 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G037452 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G032856 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
Phytophthora cinnamomi is a devastating soil-borne oomycete with a very broad host range however there remains a major gap in the understanding of plant resistance responses to the pathogen, furthermore, necrotrophic plant-pathogen interactions, particularly those of root pathogens, remain poorly understood. Zea mays exhibits non-host resistance to the pathogen and has been well characterised as a model species. Using the maize Affymetrix GeneChip array we conducted genome-wide gene expression profiling to elucidate the defence genes and pathways which are induced in the root tissue of a resistant plant species to the pathogen. Each experimental repeat consisted of 60 Z. mays seedlings in total: 15 control and 15 inoculated plants per timepoint. Root tissue was harvested and snap frozen in liquid nitrogen and stored at -80ÃÂ°C until required. All harvested root tissue within each treatment group at each time point was pooled for total RNA extractions. Three technical repeats were conducted resulting in a total of 180 sampled plants and 12 samples of purified total RNA for microarray analysis. Total RNA was labelled, hybridised and scanned using standard Affymetrix protocols and resulted in 12 .CEL files. Raw data was processed using Partek Genomics Suite software and normalised using Robust Multi-Chip Average Software. Differentially expressed genes were defined by a fold difference of >1.5 (log2) and those with a P value cutoff of <0.05 were considered statistically significant.
GRMZM2G449094 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'
GRMZM2G053206 UP in 'Phytophthora cinnamomi' vs 'mock infected' at '6 hour'