NFIL3
type: EnsemblDatabaseReference

227140_at
type: EFO_0005072
part of: A-AFFY-44

GEM
type: EnsemblDatabaseReference

214212_x_at
type: EFO_0005072
part of: A-AFFY-44

TMEM158
type: EnsemblDatabaseReference

SGMS2
type: EnsemblDatabaseReference

MEDAG UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.16748250650268
p value: 0.0481878991910293
refers to: 227058_at
refers to: MEDAG
t statistic: 4.87063500723378

MAFF
type: EnsemblDatabaseReference

SLC7A11 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.17280972485822
p value: 0.0390581273412409
refers to: SLC7A11
refers to: 217678_at
t statistic: 5.47972229171135

SOD2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 6.20762092723004
p value: 0.0221128206114934
refers to: SOD2
refers to: 215078_at
t statistic: 7.49705363599654

FUCA1
type: EnsemblDatabaseReference

205043_at
type: EFO_0005072
part of: A-AFFY-44

209545_s_at
type: EFO_0005072
part of: A-AFFY-44

IL13RA2
type: EnsemblDatabaseReference

IDO1
type: EnsemblDatabaseReference

CHP2 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.72623682341959
p value: 0.0221128206114934
refers to: 206149_at
refers to: CHP2
t statistic: -7.24526231516129

MOGAT2
type: EnsemblDatabaseReference

219540_at
type: EFO_0005072
part of: A-AFFY-44

LMCD1
type: EnsemblDatabaseReference

205207_at
type: EFO_0005072
part of: A-AFFY-44

MAFF UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.21083592380239
p value: 0.0417519983189057
refers to: MAFF
refers to: 205193_at
t statistic: 5.31800829512156

IL1B
type: EnsemblDatabaseReference

AKR1C3
type: EnsemblDatabaseReference

CYP3A5
type: EnsemblDatabaseReference

(Assay) GSM579381
type: Assay
has participant: A-AFFY-44

KCNE4
type: EnsemblDatabaseReference

CLEC2D
type: EnsemblDatabaseReference

PTX3
type: EnsemblDatabaseReference

LOX UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.0193953108985
p value: 0.0386588918508973
refers to: LOX
refers to: 215446_s_at
t statistic: 5.50901278982511

BIRC3
type: EnsemblDatabaseReference

IL1RL1
type: EnsemblDatabaseReference

ANGPTL4 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.07488854341213
p value: 0.044745369721596
refers to: ANGPTL4
refers to: 221009_s_at
t statistic: 5.00863731156633

VEGFA
type: EnsemblDatabaseReference

203574_at
type: EFO_0005072
part of: A-AFFY-44

GABPB1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.00403534157603
p value: 0.0326248769639204
refers to: 206173_x_at
refers to: GABPB1
t statistic: 6.10578195702048

242809_at
type: EFO_0005072
part of: A-AFFY-44

ZNF267
type: EnsemblDatabaseReference

PANK1
type: EnsemblDatabaseReference

204748_at
type: EFO_0005072
part of: A-AFFY-44

PMAIP1
type: EnsemblDatabaseReference

226498_at
type: EFO_0005072
part of: A-AFFY-44

PFKFB3
type: EnsemblDatabaseReference

ITGA2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.41139815597303
p value: 0.0198114692978182
refers to: ITGA2
refers to: 205032_at
t statistic: 7.94375240244438

(Assay) GSM579391
type: Assay
has participant: A-AFFY-44

GABPB1
type: EnsemblDatabaseReference

(Assay) GSM579384
type: Assay
has participant: A-AFFY-44

DNAJB1
type: EnsemblDatabaseReference

ITPRIP
type: EnsemblDatabaseReference

RP11-30P6.6
type: EnsemblDatabaseReference

FLT1
type: EnsemblDatabaseReference

CHP2
type: EnsemblDatabaseReference

ANKRD9
type: EnsemblDatabaseReference

LMCD1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.53521702840771
p value: 0.0185143175155631
refers to: LMCD1
refers to: 242767_at
t statistic: 9.11233545516735

FUCA1
type: EnsemblDatabaseReference

1552507_at
type: EFO_0005072
part of: A-AFFY-44

IL13RA2
type: EnsemblDatabaseReference

213155_at
type: EFO_0005072
part of: A-AFFY-44

JMY
type: EnsemblDatabaseReference

AGPAT3 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.05332709050518
p value: 0.0366632229059748
refers to: AGPAT3
refers to: 223182_s_at
t statistic: -5.71557323114218

LMCD1
type: EnsemblDatabaseReference

CPT2
type: EnsemblDatabaseReference

RORA
type: EnsemblDatabaseReference

209960_at
type: EFO_0005072
part of: A-AFFY-44

230536_at
type: EFO_0005072
part of: A-AFFY-44

LOX UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.19927045124079
p value: 0.0221128206114934
refers to: LOX
refers to: 204298_s_at
t statistic: 7.49521383655912

213664_at
type: EFO_0005072
part of: A-AFFY-44

212196_at
type: EFO_0005072
part of: A-AFFY-44

IL6 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 6.2390208125442
p value: 0.0238120408085788
refers to: IL6
refers to: 205207_at
t statistic: 7.0141754429505

DNAJB1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.81755811981477
p value: 0.0270961883269926
refers to: 200664_s_at
refers to: DNAJB1
t statistic: 6.7060997819817

206211_at
type: EFO_0005072
part of: A-AFFY-44

ERO1L
type: EnsemblDatabaseReference

236225_at
type: EFO_0005072
part of: A-AFFY-44

KRCC1
type: EnsemblDatabaseReference

212942_s_at
type: EFO_0005072
part of: A-AFFY-44

(Sample) stimulus/phorbol 12-myristate 13-acetate (PMA)/ionomycin (IO))
type: EFO_0000001
property type: stimulus
property value: phorbol 12-myristate 13-acetate (PMA)/ionomycin (IO))

JMY UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.19536326370917
p value: 0.0368927354280889
refers to: JMY
refers to: 241985_at
t statistic: 5.62409003855014

IL1RL1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 5.11128619147312
p value: 0.0153205956655966
refers to: IL1RL1
refers to: 207526_s_at
t statistic: 13.880244352272

209277_at
type: EFO_0005072
part of: A-AFFY-44

DHRS11
type: EnsemblDatabaseReference

IL6ST UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.00106118614417
p value: 0.0427566869263894
refers to: IL6ST
refers to: 212196_at
t statistic: 5.13632958179803

CD274
type: EnsemblDatabaseReference

INSIG1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.54254776556037
p value: 0.0221128206114934
refers to: INSIG1
refers to: 201625_s_at
t statistic: 7.24767241710888

209835_x_at
type: EFO_0005072
part of: A-AFFY-44

INHBA
type: EnsemblDatabaseReference

SERPINE1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.69188015153283
p value: 0.0326248769639204
refers to: SERPINE1
refers to: 202628_s_at
t statistic: 6.10490392953608

IL18R1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.95783527156694
p value: 0.0487035249459002
refers to: 206618_at
refers to: IL18R1
t statistic: 4.8436846510951

SEC24A UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.40495324588225
p value: 0.0440393513382343
refers to: 212902_at
refers to: SEC24A
t statistic: 5.0728986195051

223982_s_at
type: EFO_0005072
part of: A-AFFY-44

204490_s_at
type: EFO_0005072
part of: A-AFFY-44

CXCL1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.93471282481749
p value: 0.0326248769639204
refers to: 204470_at
refers to: CXCL1
t statistic: 6.18254222855331

SEC24A
type: EnsemblDatabaseReference

DNAJA4
type: EnsemblDatabaseReference

CREM UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.53861709566163
p value: 0.0422245243122849
refers to: CREM
refers to: 209967_s_at
t statistic: 5.18862006519491

CHP2
type: EnsemblDatabaseReference

(Sample) organism/Homo sapiens
type: Homo sapiens
property type: organism
property value: Homo sapiens

KLHL29 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.42069175109869
p value: 0.0426934791770102
refers to: 229310_at
refers to: KLHL29
t statistic: 5.15088575696186

BCL2A1
type: EnsemblDatabaseReference

ZNF331 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.23252141774543
p value: 0.0497345929984092
refers to: ZNF331
refers to: 219228_at
t statistic: 4.78315470137813

NR4A3
type: EnsemblDatabaseReference

224963_at
type: EFO_0005072
part of: A-AFFY-44

212641_at
type: EFO_0005072
part of: A-AFFY-44

GADD45G
type: EnsemblDatabaseReference

SLC2A3 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.29453045248587
p value: 0.0326248769639204
refers to: 202498_s_at
refers to: SLC2A3
t statistic: 6.22387040648649

Analysis of 'co-cultured with L. casei BL23' vs 'no co-culturing with probiotic bacteria' in 'fresh specimen; PMA/IO stimulation'
type: MicroarrayDifferentialExpressionAnalysis

REL
type: EnsemblDatabaseReference

(Assay) GSM579393
type: Assay
has participant: A-AFFY-44

WSCD1
type: EnsemblDatabaseReference

FERMT2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.43124044198892
p value: 0.0326248769639204
refers to: FERMT2
refers to: 209209_s_at
t statistic: 6.16849686392048

209160_at
type: EFO_0005072
part of: A-AFFY-44

226490_at
type: EFO_0005072
part of: A-AFFY-44

CD274 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.76381411947627
p value: 0.0185143175155631
refers to: CD274
refers to: 227458_at
t statistic: 8.8751462972911

TSLP
type: EnsemblDatabaseReference

CXCL8
type: EnsemblDatabaseReference

XK
type: EnsemblDatabaseReference

204597_x_at
type: EFO_0005072
part of: A-AFFY-44

205266_at
type: EFO_0005072
part of: A-AFFY-44

206172_at
type: EFO_0005072
part of: A-AFFY-44

205067_at
type: EFO_0005072
part of: A-AFFY-44

KLHL29
type: EnsemblDatabaseReference

CD274
type: EnsemblDatabaseReference

INHBA
type: EnsemblDatabaseReference

HGF
type: EnsemblDatabaseReference

GJC1
type: EnsemblDatabaseReference

TAGAP UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.6965199481821
p value: 0.0366632229059748
refers to: TAGAP
refers to: 1552542_s_at
t statistic: 5.71041144413669

SELE
type: EnsemblDatabaseReference

225582_at
type: EFO_0005072
part of: A-AFFY-44

C5orf30 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.20016639999636
p value: 0.0428626945142256
refers to: 221823_at
refers to: C5orf30
t statistic: -5.12440299893595

SOD2
type: EnsemblDatabaseReference

ERN1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.68668495895693
p value: 0.0426934791770102
refers to: ERN1
refers to: 235745_at
t statistic: 5.15826375973267

SLC35D1
type: EnsemblDatabaseReference

TFPI2
type: EnsemblDatabaseReference

CCRN4L UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.52111735873793
p value: 0.016164149761719
refers to: CCRN4L
refers to: 1554283_at
t statistic: 10.8492792772506

MMP10
type: EnsemblDatabaseReference

210029_at
type: EFO_0005072
part of: A-AFFY-44

230380_at
type: EFO_0005072
part of: A-AFFY-44

DUSP4
type: EnsemblDatabaseReference

INSIG1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.73585342415869
p value: 0.0426934791770102
refers to: INSIG1
refers to: 201626_at
t statistic: 5.14553765453018

ADAMTS9 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.52430619000129
p value: 0.0326248769639204
refers to: 226814_at
refers to: ADAMTS9
t statistic: 6.08562250148645

CCL4
type: EnsemblDatabaseReference

IL6
type: EnsemblDatabaseReference

204243_at
type: EFO_0005072
part of: A-AFFY-44

1554452_a_at
type: EFO_0005072
part of: A-AFFY-44

225536_at
type: EFO_0005072
part of: A-AFFY-44

221823_at
type: EFO_0005072
part of: A-AFFY-44

IFRD1
type: EnsemblDatabaseReference

WSCD1
type: EnsemblDatabaseReference

G0S2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.99592193891509
p value: 0.0440393513382343
refers to: G0S2
refers to: 213524_s_at
t statistic: 5.05721679076864

CXCL6
type: EnsemblDatabaseReference

TM4SF1
type: EnsemblDatabaseReference

217911_s_at
type: EFO_0005072
part of: A-AFFY-44

(Assay) GSM579385
type: Assay
has participant: A-AFFY-44

RRAD UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.72839050322296
p value: 0.0444939871815538
refers to: RRAD
refers to: 204802_at
t statistic: 5.02383603962232

EPB41L4B
type: EnsemblDatabaseReference

TMEM158 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.3227316190664
p value: 0.0452083695928577
refers to: TMEM158
refers to: 213338_at
t statistic: 4.98483038842535

CXCL2
type: EnsemblDatabaseReference

204440_at
type: EFO_0005072
part of: A-AFFY-44

TNFAIP6
type: EnsemblDatabaseReference

204595_s_at
type: EFO_0005072
part of: A-AFFY-44

RAB8B UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.21258544501872
p value: 0.0233762007439188
refers to: RAB8B
refers to: 219210_s_at
t statistic: 7.13469884742543

202679_at
type: EFO_0005072
part of: A-AFFY-44

PNPLA8 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.93026538720112
p value: 0.0497345929984092
refers to: PNPLA8
refers to: 223310_x_at
t statistic: 4.79586912887306

(Factor value) STIMULUS/phorbol 12-myristate 13-acetate (PMA)/ionomycin (IO))
type: EFO_0000001
property type: STIMULUS
property value: phorbol 12-myristate 13-acetate (PMA)/ionomycin (IO))

ADM UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.2068769795443
p value: 0.0422025914372596
refers to: ADM
refers to: 202912_at
t statistic: 5.28405911278062

HIVEP2
type: EnsemblDatabaseReference

203499_at
type: EFO_0005072
part of: A-AFFY-44

(Sample) organism part/colonic intestinal mucosa
type: EFO_0000001
property type: organism part
property value: colonic intestinal mucosa

218807_at
type: EFO_0005072
part of: A-AFFY-44

KCNE4 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.39564375257986
p value: 0.0326248769639204
refers to: KCNE4
refers to: 1552507_at
t statistic: 6.18636677004905

AP3S2 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.05318519069323
p value: 0.029590302644897
refers to: 213215_at
refers to: AP3S2
t statistic: -6.55258969894847

(Factor value) GROWTH_CONDITION/co-cultured with L. casei BL23
type: EFO_0000001
property type: GROWTH_CONDITION
property value: co-cultured with L. casei BL23

MMP10
type: EnsemblDatabaseReference

DUSP4
type: EnsemblDatabaseReference

242767_at
type: EFO_0005072
part of: A-AFFY-44

IL6
type: EnsemblDatabaseReference

210439_at
type: EFO_0005072
part of: A-AFFY-44

(Assay) GSM579388
type: Assay
has participant: A-AFFY-44

CXCL11
type: EnsemblDatabaseReference

SLC1A1 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.10176893464586
p value: 0.047861354964861
refers to: 213664_at
refers to: SLC1A1
t statistic: -4.88138732029084

(Assay) GSM579382
type: Assay
has participant: A-AFFY-44

LOX
type: EnsemblDatabaseReference

1552542_s_at
type: EFO_0005072
part of: A-AFFY-44

THAP2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.9932612017113
p value: 0.0497345929984092
refers to: 230380_at
refers to: THAP2
t statistic: 4.7835067833721

204596_s_at
type: EFO_0005072
part of: A-AFFY-44

DDIT4
type: EnsemblDatabaseReference

SLC35D1 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -1.79915594080823
p value: 0.0326248769639204
refers to: SLC35D1
refers to: 209711_at
t statistic: -6.16305980422829

RORA UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.58270366669192
p value: 0.0422245243122849
refers to: 210479_s_at
refers to: RORA
t statistic: 5.18693641935796

209209_s_at
type: EFO_0005072
part of: A-AFFY-44

IL18R1
type: EnsemblDatabaseReference

220161_s_at
type: EFO_0005072
part of: A-AFFY-44

SLC2A3 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.75216810186201
p value: 0.040760179049793
refers to: SLC2A3
refers to: 202499_s_at
t statistic: 5.37300611217253

HOMER1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.80718102419829
p value: 0.0368927354280889
refers to: HOMER1
refers to: 213793_s_at
t statistic: 5.6162982710651

TNFAIP6
type: EnsemblDatabaseReference

222343_at
type: EFO_0005072
part of: A-AFFY-44

GADD45G UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.74877295740666
p value: 0.0331152268021923
refers to: 204121_at
refers to: GADD45G
t statistic: 6.00502745057206

(Sample) growth condition/co-cultured with L. plantarum 299v
type: EFO_0000001
property type: growth condition
property value: co-cultured with L. plantarum 299v

MSMO1
type: EnsemblDatabaseReference

213310_at
type: EFO_0005072
part of: A-AFFY-44

TMEM54
type: EnsemblDatabaseReference

EPHA2
type: EnsemblDatabaseReference

206698_at
type: EFO_0005072
part of: A-AFFY-44

219210_s_at
type: EFO_0005072
part of: A-AFFY-44

RLF
type: EnsemblDatabaseReference

218756_s_at
type: EFO_0005072
part of: A-AFFY-44

BIRC3 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.61518745069238
p value: 0.0469984175740477
refers to: BIRC3
refers to: 210538_s_at
t statistic: 4.91174402100641

HSPH1
type: EnsemblDatabaseReference

IL1B UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.23803818927994
p value: 0.0185143175155631
refers to: 39402_at
refers to: IL1B
t statistic: 8.24054881481656

227626_at
type: EFO_0005072
part of: A-AFFY-44

XRN1
type: EnsemblDatabaseReference

227177_at
type: EFO_0005072
part of: A-AFFY-44

HIVEP2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.35932789291988
p value: 0.0324268149416026
refers to: HIVEP2
refers to: 212641_at
t statistic: 6.34146375354609

TUBAL3
type: EnsemblDatabaseReference

CFTR
type: EnsemblDatabaseReference

226497_s_at
type: EFO_0005072
part of: A-AFFY-44

218507_at
type: EFO_0005072
part of: A-AFFY-44

ANKRD37
type: EnsemblDatabaseReference

CD44
type: EnsemblDatabaseReference

LIF UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.16922880623477
p value: 0.0282073033272928
refers to: 205266_at
refers to: LIF
t statistic: 6.64151255441229

231779_at
type: EFO_0005072
part of: A-AFFY-44

PDPN
type: EnsemblDatabaseReference

SLC35G1
type: EnsemblDatabaseReference

HILPDA
type: EnsemblDatabaseReference

1554997_a_at
type: EFO_0005072
part of: A-AFFY-44

ANGPT2
type: EnsemblDatabaseReference

204103_at
type: EFO_0005072
part of: A-AFFY-44

ANGPTL4
type: EnsemblDatabaseReference

211527_x_at
type: EFO_0005072
part of: A-AFFY-44

204802_at
type: EFO_0005072
part of: A-AFFY-44

TMEM56
type: EnsemblDatabaseReference

PNP
type: EnsemblDatabaseReference

TFPI2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.39213824542622
p value: 0.0366632229059748
refers to: 209277_at
refers to: TFPI2
t statistic: 5.76288828251174

TM4SF1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.49933212476642
p value: 0.0369384297855524
refers to: 215034_s_at
refers to: TM4SF1
t statistic: 5.601615112473

207850_at
type: EFO_0005072
part of: A-AFFY-44

231810_at
type: EFO_0005072
part of: A-AFFY-44

BASP1
type: EnsemblDatabaseReference

ZNF331 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.76581418614618
p value: 0.045113693664037
refers to: ZNF331
refers to: 227613_at
t statistic: 4.99144537680227

GEM UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 5.22522175120788
p value: 0.0422025914372596
refers to: 204472_at
refers to: GEM
t statistic: 5.22209161638431

AP3S2
type: EnsemblDatabaseReference

PITPNC1
type: EnsemblDatabaseReference

TMEM54
type: EnsemblDatabaseReference

NPC1
type: EnsemblDatabaseReference

223310_x_at
type: EFO_0005072
part of: A-AFFY-44

MMP3
type: EnsemblDatabaseReference

STC1
type: EnsemblDatabaseReference

FERMT2
type: EnsemblDatabaseReference

BTG2
type: EnsemblDatabaseReference

221898_at
type: EFO_0005072
part of: A-AFFY-44

238423_at
type: EFO_0005072
part of: A-AFFY-44

HSPH1
type: EnsemblDatabaseReference

227337_at
type: EFO_0005072
part of: A-AFFY-44

IGSF3
type: EnsemblDatabaseReference

NPC1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.89138631376866
p value: 0.0221128206114934
refers to: NPC1
refers to: 202679_at
t statistic: 7.22758109659598

CMTM4
type: EnsemblDatabaseReference

219228_at
type: EFO_0005072
part of: A-AFFY-44

ZNF267 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.0877019773844
p value: 0.0467643766917889
refers to: ZNF267
refers to: 219540_at
t statistic: 4.92130796519882

PLAUR
type: EnsemblDatabaseReference

TMEM56 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.52011256152656
p value: 0.0407969462926797
refers to: TMEM56
refers to: 237515_at
t statistic: -5.36018839696244

237515_at
type: EFO_0005072
part of: A-AFFY-44

TACSTD2
type: EnsemblDatabaseReference

HILPDA
type: EnsemblDatabaseReference

CXCL11 DOWN in 'co-cultured with L. casei BL23' vs 'no co-culturing with probiotic bacteria' in 'fresh specimen; PMA/IO stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.48333322269649
p value: 0.00478171203540502
refers to: CXCL11
refers to: 211122_s_at
t statistic: -4.23587884073822

ANGPTL4
type: EnsemblDatabaseReference

233500_x_at
type: EFO_0005072
part of: A-AFFY-44

NKX3-1
type: EnsemblDatabaseReference

213338_at
type: EFO_0005072
part of: A-AFFY-44

TAGAP
type: EnsemblDatabaseReference

ADAMTS9
type: EnsemblDatabaseReference

UBE2H UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.16518196763854
p value: 0.0422245243122849
refers to: 221962_s_at
refers to: UBE2H
t statistic: 5.18793240330278

PAQR8 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.63988294191286
p value: 0.0326248769639204
refers to: 226423_at
refers to: PAQR8
t statistic: -6.22696354479589

211668_s_at
type: EFO_0005072
part of: A-AFFY-44

202838_at
type: EFO_0005072
part of: A-AFFY-44

TUBAL3 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.38411220811445
p value: 0.047861354964861
refers to: TUBAL3
refers to: 220310_at
t statistic: -4.8827870339771

TNFAIP6 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 5.15857486119141
p value: 0.0185143175155631
refers to: TNFAIP6
refers to: 206025_s_at
t statistic: 8.11479130866284

PTX3 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 5.31794208819586
p value: 0.0417519983189057
refers to: 206157_at
refers to: PTX3
t statistic: 5.32351734834927

BCL2L11
type: EnsemblDatabaseReference

ANKRD9 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.47000978453689
p value: 0.0366632229059748
refers to: ANKRD9
refers to: 227959_at
t statistic: -5.72569697694049

LDLR
type: EnsemblDatabaseReference

201926_s_at
type: EFO_0005072
part of: A-AFFY-44

CD55
type: EnsemblDatabaseReference

FERMT2
type: EnsemblDatabaseReference

INSIG1
type: EnsemblDatabaseReference

C5orf30
type: EnsemblDatabaseReference

210118_s_at
type: EFO_0005072
part of: A-AFFY-44

226814_at
type: EFO_0005072
part of: A-AFFY-44

BASP1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.44787554826889
p value: 0.039141104289956
refers to: BASP1
refers to: 202391_at
t statistic: 5.44874812178606

RLF UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.27112514215073
p value: 0.0331152268021923
refers to: RLF
refers to: 204243_at
t statistic: 6.02813268644193

MMP1
type: EnsemblDatabaseReference

DUSP2
type: EnsemblDatabaseReference

(Assay) GSM579398
type: Assay
has participant: A-AFFY-44

NAPEPLD DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.23210200164149
p value: 0.0422025914372596
refers to: NAPEPLD
refers to: 226041_at
t statistic: -5.24235167293229

CXCL1
type: EnsemblDatabaseReference

RAB8B
type: EnsemblDatabaseReference

SLC26A2
type: EnsemblDatabaseReference

NFIL3 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.70050017768046
p value: 0.0493073708299948
refers to: NFIL3
refers to: 203574_at
t statistic: 4.81545419073406

CDS1 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.54620057189626
p value: 0.0185143175155631
refers to: CDS1
refers to: 226185_at
t statistic: -8.30755964308874

IL1A
type: EnsemblDatabaseReference

209146_at
type: EFO_0005072
part of: A-AFFY-44

BRI3BP
type: EnsemblDatabaseReference

NKX3-1
type: EnsemblDatabaseReference

CXCL2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 5.61706799868806
p value: 0.0326248769639204
refers to: 209774_x_at
refers to: CXCL2
t statistic: 6.11712622181435

TAGAP
type: EnsemblDatabaseReference

215078_at
type: EFO_0005072
part of: A-AFFY-44

ADAMTS9
type: EnsemblDatabaseReference

CTSL UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.46118524025671
p value: 0.0422025914372596
refers to: CTSL
refers to: 202087_s_at
t statistic: 5.23179214169959

205479_s_at
type: EFO_0005072
part of: A-AFFY-44

THBS1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.83217641660654
p value: 0.0402197446727899
refers to: 201109_s_at
refers to: THBS1
t statistic: 5.40696420624545

CXCL8 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 5.94984623533494
p value: 0.040760179049793
refers to: CXCL8
refers to: 202859_x_at
t statistic: 5.37582024114062

(Sample) growth condition/co-cultured with L. plantarum 299v (A-)
type: EFO_0000001
property type: growth condition
property value: co-cultured with L. plantarum 299v (A-)

202627_s_at
type: EFO_0005072
part of: A-AFFY-44

HSPH1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.42029725148694
p value: 0.0338673774253718
refers to: 208744_x_at
refers to: HSPH1
t statistic: 5.91793859077411

MEDAG
type: EnsemblDatabaseReference

IL1B UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.04558383691757
p value: 0.0238120408085788
refers to: IL1B
refers to: 205067_at
t statistic: 7.00906561126029

SHROOM3
type: EnsemblDatabaseReference

202147_s_at
type: EFO_0005072
part of: A-AFFY-44

204014_at
type: EFO_0005072
part of: A-AFFY-44

LIF
type: EnsemblDatabaseReference

BCL6
type: EnsemblDatabaseReference

AGPAT3
type: EnsemblDatabaseReference

205681_at
type: EFO_0005072
part of: A-AFFY-44

E-GEOD-23630
type: microarray 1colour mrna differential
RO_0002162: Homo sapiens
description: Background: In the last decade, much attention has been drawn to probiotic bacteria in the context of inflammatory bowel disease (IBD), since the potential of certain strains to attenuate inflammation was demonstrated in several animal experiments and clinical studies. Data in humans elucidating the molecular mechanism of probiotic action are still scarce. To this end, we used an organ culture system of human colon mucosa and investigated the gene expression profiles after treatment with different probiotic bacteria in phorbol 12-myristate 13-acetate (PMA)/ionomycin (IO)) stimulated samples using whole genome microarrays. Moreover, we analyzed changes occurring in the intestinal explants cultured for 8 hours when compared to fresh, directly frozen mucosa, in order to infer the suitability of the system to study an inflammatory stimulus and likely antiinflammatory responses. Results: Culturing intestinal colon fragments during 8 hours elicited differential gene expression in 283 genes, 229 upregulated and 54 downregulated. Upregulated genes were predominantly related to apoptosis, whereas downregulated genes encoded mitochondrial proteins. No specific enrichment of genes related to inflammation or immune response could be detected, confirming the suitability of the system to further study the inmunomodulatory/anti-inflammatory properties of Lactobacillus casei BL23 (BL23), L.plantarum 299v (LP299v) and L.plantarum 299v (A-) (LP299v (A-)), a mutant strain with reduced adhesive properties to enterocytes. Intestinal explants were stimulated with PMA/IO for 3 hours and subsequently incubated with probiotic bacteria for 4 h. ANOVA analysis (p âÂÂ¤ 0,01) revealed 205 differentially expressed genes between Control, PMA/IO (Inflamed), and the 3 bacterial treatments. Most importantly, a number of PMA/IO induced genes related to immune response and immune system process such as IL-2, IFN-ÃÂ³, IL17A and pro-inflammatory cytokines CXCL9 and CXCL11 were downregulated by BL23, LP…
uses data from: http://identifiers.org/pubmed/22669626

CXCL1
type: EnsemblDatabaseReference

RAB8B
type: EnsemblDatabaseReference

MMP10 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 6.22717829292177
p value: 0.0185143175155631
refers to: MMP10
refers to: 205680_at
t statistic: 8.38963859657662

202286_s_at
type: EFO_0005072
part of: A-AFFY-44

213524_s_at
type: EFO_0005072
part of: A-AFFY-44

213943_at
type: EFO_0005072
part of: A-AFFY-44

CREM
type: EnsemblDatabaseReference

CXCL3
type: EnsemblDatabaseReference

218303_x_at
type: EFO_0005072
part of: A-AFFY-44

TMEM158
type: EnsemblDatabaseReference

G0S2
type: EnsemblDatabaseReference

219736_at
type: EFO_0005072
part of: A-AFFY-44

GCNT2
type: EnsemblDatabaseReference

201627_s_at
type: EFO_0005072
part of: A-AFFY-44

CLMP UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.35250636688738
p value: 0.0426934791770102
refers to: CLMP
refers to: 226834_at
t statistic: 5.15605426098261

236219_at
type: EFO_0005072
part of: A-AFFY-44

202628_s_at
type: EFO_0005072
part of: A-AFFY-44

229310_at
type: EFO_0005072
part of: A-AFFY-44

IRAK2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.00321078169805
p value: 0.0185143175155631
refers to: IRAK2
refers to: 231779_at
t statistic: 8.73507325233613

MOGAT2 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -1.98064967087204
p value: 0.0449257887890677
refers to: MOGAT2
refers to: 232428_at
t statistic: -5.00009792774589

IL7R
type: EnsemblDatabaseReference

C2CD4A
type: EnsemblDatabaseReference

IL1RN UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.79381032846694
p value: 0.0238120408085788
refers to: IL1RN
refers to: 212657_s_at
t statistic: 7.03229586196271

NR4A3 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.78277337250334
p value: 0.0338673774253718
refers to: NR4A3
refers to: 209959_at
t statistic: 5.91939578808891

FERMT2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.18557213731061
p value: 0.0221128206114934
refers to: 214212_x_at
refers to: FERMT2
t statistic: 7.37987226429132

BCL6 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.85158753783856
p value: 0.0487035249459002
refers to: 203140_at
refers to: BCL6
t statistic: 4.83120658380431

THBS1
type: EnsemblDatabaseReference

IL1B
type: EnsemblDatabaseReference

SHROOM3
type: EnsemblDatabaseReference

202067_s_at
type: EFO_0005072
part of: A-AFFY-44

SOD2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.961418848568
p value: 0.0497345929984092
refers to: 215223_s_at
refers to: SOD2
t statistic: 4.80048130712985

AKR1C3
type: EnsemblDatabaseReference

XRN1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.99539624819479
p value: 0.0363190713228762
refers to: XRN1
refers to: 1555785_a_at
t statistic: 5.78977843978683

PLAU UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.13430390526328
p value: 0.0306687042157247
refers to: PLAU
refers to: 205479_s_at
t statistic: 6.45080291630895

PRR15 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.00488632899461
p value: 0.0462268829154002
refers to: PRR15
refers to: 226961_at
t statistic: -4.95089915878598

MMP1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 6.52739548702892
p value: 0.0440393513382343
refers to: MMP1
refers to: 204475_at
t statistic: 5.08171225512595

KCNE4
type: EnsemblDatabaseReference

RP11-30P6.6 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -1.67315207996536
p value: 0.0422025914372596
refers to: RP11-30P6.6
refers to: 234219_at
t statistic: -5.26911923539522

IL1RL1
type: EnsemblDatabaseReference

VEGFA
type: EnsemblDatabaseReference

BHLHE40
type: EnsemblDatabaseReference

ZNF267
type: EnsemblDatabaseReference

PANK1
type: EnsemblDatabaseReference

PMAIP1
type: EnsemblDatabaseReference

BCL2L11 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.94653778195328
p value: 0.0368927354280889
refers to: BCL2L11
refers to: 222343_at
t statistic: 5.68282917433755

HOMER1
type: EnsemblDatabaseReference

204475_at
type: EFO_0005072
part of: A-AFFY-44

SHROOM3 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.14311797479645
p value: 0.0238782900225149
refers to: 228400_at
refers to: SHROOM3
t statistic: -6.98613170033534

CXCL3
type: EnsemblDatabaseReference

DUSP5
type: EnsemblDatabaseReference

209457_at
type: EFO_0005072
part of: A-AFFY-44

228400_at
type: EFO_0005072
part of: A-AFFY-44

PFKFB3
type: EnsemblDatabaseReference

ERN1
type: EnsemblDatabaseReference

G0S2
type: EnsemblDatabaseReference

215446_s_at
type: EFO_0005072
part of: A-AFFY-44

DUSP4 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.60369897244389
p value: 0.0331152268021923
refers to: DUSP4
refers to: 204014_at
t statistic: 6.00123571729672

FLT1
type: EnsemblDatabaseReference

DST UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.26548909552261
p value: 0.0326248769639204
refers to: DST
refers to: 204455_at
t statistic: 6.23911016356975

223182_s_at
type: EFO_0005072
part of: A-AFFY-44

236266_at
type: EFO_0005072
part of: A-AFFY-44

BHLHE40 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.08036935636371
p value: 0.0153205956655966
refers to: BHLHE40
refers to: 201169_s_at
t statistic: 11.3166365036158

RIPK2
type: EnsemblDatabaseReference

RRAD
type: EnsemblDatabaseReference

ZNF331
type: EnsemblDatabaseReference

210511_s_at
type: EFO_0005072
part of: A-AFFY-44

(Factor value) SPECIMEN_WITH_KNOWN_STORAGE_STATE/frozen specimen
type: OBI_0000922
property type: SPECIMEN_WITH_KNOWN_STORAGE_STATE
property value: frozen specimen

THBS1
type: EnsemblDatabaseReference

CPT2
type: EnsemblDatabaseReference

CPT2 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.55072036288418
p value: 0.0317309355413499
refers to: CPT2
refers to: 204264_at
t statistic: -6.38762193885766

RORA
type: EnsemblDatabaseReference

227959_at
type: EFO_0005072
part of: A-AFFY-44

202391_at
type: EFO_0005072
part of: A-AFFY-44

TWIST1
type: EnsemblDatabaseReference

PFKFB3 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.94146507418047
p value: 0.0368927354280889
refers to: PFKFB3
refers to: 202464_s_at
t statistic: 5.61905852525461

205032_at
type: EFO_0005072
part of: A-AFFY-44

HILPDA UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.51615042379861
p value: 0.0185143175155631
refers to: HILPDA
refers to: 1554452_a_at
t statistic: 9.40601481921498

KRCC1
type: EnsemblDatabaseReference

209869_at
type: EFO_0005072
part of: A-AFFY-44

CXCL3 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.79022776033162
p value: 0.0426934791770102
refers to: 207850_at
refers to: CXCL3
t statistic: 5.16692125761868

CYP3A5 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.01678382841542
p value: 0.0317309355413499
refers to: CYP3A5
refers to: 243015_at
t statistic: 6.38065140478124

BHLHE40
type: EnsemblDatabaseReference

BRI3BP DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.36677012534354
p value: 0.0366632229059748
refers to: BRI3BP
refers to: 231810_at
t statistic: -5.73703920672306

(Assay) GSM579397
type: Assay
has participant: A-AFFY-44

(Sample) specimen with known storage state/fresh specimen
type: OBI_0000971
property type: specimen with known storage state
property value: fresh specimen

STC1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 5.12281501382864
p value: 0.0214967959117358
refers to: STC1
refers to: 204597_x_at
t statistic: 7.72709097918406

226834_at
type: EFO_0005072
part of: A-AFFY-44

LRRC66 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.87172765116034
p value: 0.0185143175155631
refers to: 1568634_a_at
refers to: LRRC66
t statistic: -8.2681275283273

DUSP5
type: EnsemblDatabaseReference

ERN1
type: EnsemblDatabaseReference

PMAIP1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.10252239392291
p value: 0.039141104289956
refers to: 204285_s_at
refers to: PMAIP1
t statistic: 5.4480465099051

(Assay) GSM579394
type: Assay
has participant: A-AFFY-44

SEC24A
type: EnsemblDatabaseReference

DNAJA4
type: EnsemblDatabaseReference

212657_s_at
type: EFO_0005072
part of: A-AFFY-44

CD44 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.38853058109889
p value: 0.0422025914372596
refers to: 204490_s_at
refers to: CD44
t statistic: 5.21960381487461

BCL2A1
type: EnsemblDatabaseReference

230788_at
type: EFO_0005072
part of: A-AFFY-44

215223_s_at
type: EFO_0005072
part of: A-AFFY-44

NR4A3
type: EnsemblDatabaseReference

PITPNC1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.09139229116392
p value: 0.0326248769639204
refers to: PITPNC1
refers to: 219155_at
t statistic: 6.2764610452528

206118_at
type: EFO_0005072
part of: A-AFFY-44

RRAD
type: EnsemblDatabaseReference

RIPK2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.23181861079852
p value: 0.0429460482969496
refers to: RIPK2
refers to: 209545_s_at
t statistic: 5.1166521385773

GADD45G
type: EnsemblDatabaseReference

REL
type: EnsemblDatabaseReference

206618_at
type: EFO_0005072
part of: A-AFFY-44

TWIST1
type: EnsemblDatabaseReference

241985_at
type: EFO_0005072
part of: A-AFFY-44

TSLP
type: EnsemblDatabaseReference

ICAM1
type: EnsemblDatabaseReference

CASC7 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.18763526360501
p value: 0.0185143175155631
refers to: 213310_at
refers to: CASC7
t statistic: 8.98731167046731

PRR15
type: EnsemblDatabaseReference

202464_s_at
type: EFO_0005072
part of: A-AFFY-44

PLAU
type: EnsemblDatabaseReference

217678_at
type: EFO_0005072
part of: A-AFFY-44

226649_at
type: EFO_0005072
part of: A-AFFY-44

PDLIM4
type: EnsemblDatabaseReference

FLT1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.45013154351894
p value: 0.0366632229059748
refers to: FLT1
refers to: 226498_at
t statistic: 5.72400855906005

HGF
type: EnsemblDatabaseReference

TWIST1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.92430516208061
p value: 0.0285117019793071
refers to: TWIST1
refers to: 213943_at
t statistic: 6.61243187733528

ADM
type: EnsemblDatabaseReference

CD83 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.64797713316015
p value: 0.0422025914372596
refers to: CD83
refers to: 204440_at
t statistic: 5.26178011115523

213793_s_at
type: EFO_0005072
part of: A-AFFY-44

PAQR8
type: EnsemblDatabaseReference

SERPINE1
type: EnsemblDatabaseReference

LRRC66
type: EnsemblDatabaseReference

ADRA2A DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -1.73821460262886
p value: 0.0185143175155631
refers to: ADRA2A
refers to: 209869_at
t statistic: -9.00063226964373

SLC35D1
type: EnsemblDatabaseReference

(Factor value) STIMULUS/none
type: EFO_0001461
property type: STIMULUS
property value: none

202087_s_at
type: EFO_0005072
part of: A-AFFY-44

TFPI2
type: EnsemblDatabaseReference

SYTL3
type: EnsemblDatabaseReference

227458_at
type: EFO_0005072
part of: A-AFFY-44

FAM49A
type: EnsemblDatabaseReference

CXCL6
type: EnsemblDatabaseReference

218691_s_at
type: EFO_0005072
part of: A-AFFY-44

CXCL8 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.55642258710073
p value: 0.0221128206114934
refers to: CXCL8
refers to: 211506_s_at
t statistic: 7.24272856793257

KRCC1 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -1.32106592037733
p value: 0.0422245243122849
refers to: 218303_x_at
refers to: KRCC1
t statistic: -5.19892730332357

CLEC2D UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.13888419939399
p value: 0.0411617139670382
refers to: CLEC2D
refers to: 233500_x_at
t statistic: 5.34486187601305

CFTR DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.02189851772778
p value: 0.0372163655783291
refers to: CFTR
refers to: 205043_at
t statistic: -5.57731296018033

243015_at
type: EFO_0005072
part of: A-AFFY-44

EPB41L4B
type: EnsemblDatabaseReference

THAP2
type: EnsemblDatabaseReference

SLC1A1
type: EnsemblDatabaseReference

CXCL2
type: EnsemblDatabaseReference

PLAU
type: EnsemblDatabaseReference

209711_at
type: EFO_0005072
part of: A-AFFY-44

XK DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.34114006866929
p value: 0.0487035249459002
refers to: XK
refers to: 206698_at
t statistic: -4.83320619449661

FGF2
type: EnsemblDatabaseReference

SLC7A11
type: EnsemblDatabaseReference

PAQR8 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.93956737164799
p value: 0.0422025914372596
refers to: PAQR8
refers to: 227626_at
t statistic: -5.23973992425029

228776_at
type: EFO_0005072
part of: A-AFFY-44

SERPINE1
type: EnsemblDatabaseReference

206025_s_at
type: EFO_0005072
part of: A-AFFY-44

STC1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 5.4407853695665
p value: 0.0221128206114934
refers to: 204595_s_at
refers to: STC1
t statistic: 7.33237664913107

CTSL
type: EnsemblDatabaseReference

GLS
type: EnsemblDatabaseReference

CEMIP
type: EnsemblDatabaseReference

INHBA UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.75735921358508
p value: 0.0153205956655966
refers to: INHBA
refers to: 210511_s_at
t statistic: 11.5722935416144

AKR1C3 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -1.99969250363237
p value: 0.044745369721596
refers to: AKR1C3
refers to: 209160_at
t statistic: -5.00869705905734

SYTL3
type: EnsemblDatabaseReference

GGT6 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.21991834876188
p value: 0.0390581273412409
refers to: 236225_at
refers to: GGT6
t statistic: -5.49134676096708

CORO2A
type: EnsemblDatabaseReference

SERPINB2
type: EnsemblDatabaseReference

LY9
type: EnsemblDatabaseReference

219155_at
type: EFO_0005072
part of: A-AFFY-44

HILPDA UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.35407887673051
p value: 0.0298244970616821
refers to: HILPDA
refers to: 218507_at
t statistic: 6.5251171637245

208092_s_at
type: EFO_0005072
part of: A-AFFY-44

ICOS UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.24105597129194
p value: 0.0376606298048909
refers to: ICOS
refers to: 210439_at
t statistic: 5.55498051775927

PDLIM4 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.05347584624359
p value: 0.0153205956655966
refers to: PDLIM4
refers to: 218691_s_at
t statistic: 11.2846714472991

ITGA2
type: EnsemblDatabaseReference

TRIM36
type: EnsemblDatabaseReference

ANGPT2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.33066329427705
p value: 0.0185143175155631
refers to: ANGPT2
refers to: 205572_at
t statistic: 9.42785220932768

LOX
type: EnsemblDatabaseReference

216841_s_at
type: EFO_0005072
part of: A-AFFY-44

1554283_at
type: EFO_0005072
part of: A-AFFY-44

SLC1A1
type: EnsemblDatabaseReference

PBX4 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.61944920801959
p value: 0.0421904148007557
refers to: PBX4
refers to: 230536_at
t statistic: 5.29521122384397

TNFAIP6 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 5.72371586778301
p value: 0.0359243072731398
refers to: TNFAIP6
refers to: 206026_s_at
t statistic: 5.81054305901938

IL18R1
type: EnsemblDatabaseReference

206026_s_at
type: EFO_0005072
part of: A-AFFY-44

(Factor value) GROWTH_CONDITION/co-cultured with L. plantarum 299v (A-)
type: EFO_0000001
property type: GROWTH_CONDITION
property value: co-cultured with L. plantarum 299v (A-)

ADRA2A
type: EnsemblDatabaseReference

204794_at
type: EFO_0005072
part of: A-AFFY-44

FGF2
type: EnsemblDatabaseReference

SLC7A11
type: EnsemblDatabaseReference

CD83
type: EnsemblDatabaseReference

210426_x_at
type: EFO_0005072
part of: A-AFFY-44

MSMO1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.03004376604223
p value: 0.0440393513382343
refers to: MSMO1
refers to: 209146_at
t statistic: 5.0500151911742

NAPEPLD
type: EnsemblDatabaseReference

CTSL
type: EnsemblDatabaseReference

EPB41L4B DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.0931041080848
p value: 0.0467643766917889
refers to: EPB41L4B
refers to: 220161_s_at
t statistic: -4.92643669066227

241031_at
type: EFO_0005072
part of: A-AFFY-44

RLF
type: EnsemblDatabaseReference

SLC35G1 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.75630602287916
p value: 0.0185143175155631
refers to: SLC35G1
refers to: 236219_at
t statistic: -8.49924908789393

(Sample) growth condition/co-cultured with L. casei BL23
type: EFO_0000001
property type: growth condition
property value: co-cultured with L. casei BL23

(Assay) GSM579392
type: Assay
has participant: A-AFFY-44

NHSL1
type: EnsemblDatabaseReference

IL1RL1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.0845199285146
p value: 0.0221128206114934
refers to: IL1RL1
refers to: 242809_at
t statistic: 7.4484291750367

39402_at
type: EFO_0005072
part of: A-AFFY-44

CASC7
type: EnsemblDatabaseReference

CORO2A
type: EnsemblDatabaseReference

SOD2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.60999930942676
p value: 0.0422245243122849
refers to: 216841_s_at
refers to: SOD2
t statistic: 5.18947750453221

(Factor value) SPECIMEN_WITH_KNOWN_STORAGE_STATE/fresh specimen
type: OBI_0000971
property type: SPECIMEN_WITH_KNOWN_STORAGE_STATE
property value: fresh specimen

UBE2H
type: EnsemblDatabaseReference

LY9
type: EnsemblDatabaseReference

PBX4
type: EnsemblDatabaseReference

209278_s_at
type: EFO_0005072
part of: A-AFFY-44

ITGA2
type: EnsemblDatabaseReference

IGSF3 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -1.95536756233955
p value: 0.0458712059989122
refers to: IGSF3
refers to: 202421_at
t statistic: -4.96623100349907

ANKRD37
type: EnsemblDatabaseReference

CD44
type: EnsemblDatabaseReference

SELE UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 6.53007442429382
p value: 0.0306687042157247
refers to: SELE
refers to: 206211_at
t statistic: 6.44928692578563

PDPN
type: EnsemblDatabaseReference

(Sample) specimen with known storage state/frozen specimen
type: OBI_0000922
property type: specimen with known storage state
property value: frozen specimen

201235_s_at
type: EFO_0005072
part of: A-AFFY-44

ANGPT2
type: EnsemblDatabaseReference

MAFF
type: EnsemblDatabaseReference

ARL5B
type: EnsemblDatabaseReference

210538_s_at
type: EFO_0005072
part of: A-AFFY-44

DUSP5 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.85012516946759
p value: 0.0370918046194728
refers to: 209457_at
refers to: DUSP5
t statistic: 5.5881819358141

TMEM56
type: EnsemblDatabaseReference

ADRA2A
type: EnsemblDatabaseReference

232428_at
type: EFO_0005072
part of: A-AFFY-44

IDO1
type: EnsemblDatabaseReference

VAV3 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.55953725688152
p value: 0.0464414853676438
refers to: VAV3
refers to: 218807_at
t statistic: -4.94083369868804

(Factor value) GROWTH_CONDITION/co-cultured with L. plantarum 299v
type: EFO_0000001
property type: GROWTH_CONDITION
property value: co-cultured with L. plantarum 299v

BASP1
type: EnsemblDatabaseReference

DHRS11 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.4677991066421
p value: 0.0326248769639204
refers to: 218756_s_at
refers to: DHRS11
t statistic: -6.09206477940724

213215_at
type: EFO_0005072
part of: A-AFFY-44

STAT4 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.91780180670545
p value: 0.0214967959117358
refers to: STAT4
refers to: 206118_at
t statistic: 7.7543087954276

SGMS2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.17523435517016
p value: 0.040760179049793
refers to: SGMS2
refers to: 242963_at
t statistic: 5.36746245388939

MMP3
type: EnsemblDatabaseReference

211506_s_at
type: EFO_0005072
part of: A-AFFY-44

DNAJA4 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.26509615451191
p value: 0.0221128206114934
refers to: DNAJA4
refers to: 1554334_a_at
t statistic: 7.32378873554279

STC1
type: EnsemblDatabaseReference

DST
type: EnsemblDatabaseReference

NHSL1
type: EnsemblDatabaseReference

BTG2
type: EnsemblDatabaseReference

CLEC2D
type: EnsemblDatabaseReference

CASC7
type: EnsemblDatabaseReference

PANK1 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.47713920905071
p value: 0.040760179049793
refers to: PANK1
refers to: 226649_at
t statistic: -5.37284875796331

202859_x_at
type: EFO_0005072
part of: A-AFFY-44

1555785_a_at
type: EFO_0005072
part of: A-AFFY-44

BIRC3
type: EnsemblDatabaseReference

IGSF3
type: EnsemblDatabaseReference

HGF UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.94503136480379
p value: 0.0153205956655966
refers to: HGF
refers to: 210997_at
t statistic: 11.3715688554632

CMTM4
type: EnsemblDatabaseReference

212014_x_at
type: EFO_0005072
part of: A-AFFY-44

PLAUR
type: EnsemblDatabaseReference

202912_at
type: EFO_0005072
part of: A-AFFY-44

GCNT2 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.60495078827279
p value: 0.0366632229059748
refers to: 230788_at
refers to: GCNT2
t statistic: -5.74436483202024

PNPLA8 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.82577179396995
p value: 0.0422025914372596
refers to: 223982_s_at
refers to: PNPLA8
t statistic: 5.2263578731414

212902_at
type: EFO_0005072
part of: A-AFFY-44

GABPB1
type: EnsemblDatabaseReference

(Assay) GSM579383
type: Assay
has participant: A-AFFY-44

CDS1
type: EnsemblDatabaseReference

DNAJB1
type: EnsemblDatabaseReference

ITPRIP
type: EnsemblDatabaseReference

RP11-30P6.6
type: EnsemblDatabaseReference

ANKRD9
type: EnsemblDatabaseReference

VEGFA UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.40828978881323
p value: 0.0326248769639204
refers to: 211527_x_at
refers to: VEGFA
t statistic: 6.25957640026237

ARL5B
type: EnsemblDatabaseReference

204421_s_at
type: EFO_0005072
part of: A-AFFY-44

JMY
type: EnsemblDatabaseReference

PITPNC1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.04165797965639
p value: 0.0221128206114934
refers to: 229414_at
refers to: PITPNC1
t statistic: 7.33179366946053

227613_at
type: EFO_0005072
part of: A-AFFY-44

234219_at
type: EFO_0005072
part of: A-AFFY-44

226041_at
type: EFO_0005072
part of: A-AFFY-44

GJC1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.11184966044317
p value: 0.0497345929984092
refers to: GJC1
refers to: 228776_at
t statistic: 4.78887196252768

DST
type: EnsemblDatabaseReference

CD55
type: EnsemblDatabaseReference

INSIG1
type: EnsemblDatabaseReference

ERO1L
type: EnsemblDatabaseReference

204455_at
type: EFO_0005072
part of: A-AFFY-44

SERPINE1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.13504977694042
p value: 0.0259781253753728
refers to: SERPINE1
refers to: 202627_s_at
t statistic: 6.79114574104598

205828_at
type: EFO_0005072
part of: A-AFFY-44

IL6ST
type: EnsemblDatabaseReference

TFPI2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.4987083071404
p value: 0.0487035249459002
refers to: TFPI2
refers to: 209278_s_at
t statistic: 4.83913498123407

FGF2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.58287760495323
p value: 0.0421904148007557
refers to: FGF2
refers to: 204421_s_at
t statistic: 5.29910506100932

DHRS11
type: EnsemblDatabaseReference

202637_s_at
type: EFO_0005072
part of: A-AFFY-44

CD55 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.60323396667575
p value: 0.0368927354280889
refers to: CD55
refers to: 201926_s_at
t statistic: 5.62113046789986

TRIM36 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.10876348211293
p value: 0.0426934791770102
refers to: 219736_at
refers to: TRIM36
t statistic: -5.14295990084378

206336_at
type: EFO_0005072
part of: A-AFFY-44

FLT1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.02983061706277
p value: 0.0338673774253718
refers to: FLT1
refers to: 226497_s_at
t statistic: 5.94697331197184

200664_s_at
type: EFO_0005072
part of: A-AFFY-44

BTG2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.36814100967933
p value: 0.0368927354280889
refers to: 201235_s_at
refers to: BTG2
t statistic: 5.62991325904507

CDS1
type: EnsemblDatabaseReference

242963_at
type: EFO_0005072
part of: A-AFFY-44

PTGS2
type: EnsemblDatabaseReference

FAM49A UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.65204813400032
p value: 0.0331152268021923
refers to: FAM49A
refers to: 208092_s_at
t statistic: 5.98500473618481

PTGS2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 6.58120915624244
p value: 0.0444939871815538
refers to: PTGS2
refers to: 204748_at
t statistic: 5.02346875808005

GLS UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.89867989018467
p value: 0.0354824980878133
refers to: GLS
refers to: 223079_s_at
t statistic: 5.83299537704441

KCNE4 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.31010060280693
p value: 0.0253779154403032
refers to: KCNE4
refers to: 222379_at
t statistic: 6.8700122344847

HGF UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.76165885046724
p value: 0.0390581273412409
refers to: 209960_at
refers to: HGF
t statistic: 5.47744098126523

ANKRD37 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.5438330003609
p value: 0.0344988169950089
refers to: 227337_at
refers to: ANKRD37
t statistic: 5.88197290040874

(Assay) GSM579389
type: Assay
has participant: A-AFFY-44

204298_s_at
type: EFO_0005072
part of: A-AFFY-44

CCRN4L
type: EnsemblDatabaseReference

MEDAG
type: EnsemblDatabaseReference

222646_s_at
type: EFO_0005072
part of: A-AFFY-44

TMEM54 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -1.88428657435457
p value: 0.0330780959860094
refers to: 225536_at
refers to: TMEM54
t statistic: -6.04860115923082

202638_s_at
type: EFO_0005072
part of: A-AFFY-44

PLAU UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.5307166860433
p value: 0.0241578736832816
refers to: PLAU
refers to: 211668_s_at
t statistic: 6.95263803570576

CEMIP UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.57365979218446
p value: 0.0198114692978182
refers to: 212942_s_at
refers to: CEMIP
t statistic: 7.90729227390865

CXCL8
type: EnsemblDatabaseReference

XK
type: EnsemblDatabaseReference

LIF
type: EnsemblDatabaseReference

DDIT4 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.73283378404094
p value: 0.0368927354280889
refers to: 202887_s_at
refers to: DDIT4
t statistic: 5.66309994873123

IL6ST
type: EnsemblDatabaseReference

(Factor value) GROWTH_CONDITION/no co-culturing with probiotic bacteria
type: EFO_0000001
property type: GROWTH_CONDITION
property value: no co-culturing with probiotic bacteria

STAT4
type: EnsemblDatabaseReference

242727_at
type: EFO_0005072
part of: A-AFFY-44

(Assay) GSM579396
type: Assay
has participant: A-AFFY-44

KLHL29
type: EnsemblDatabaseReference

205572_at
type: EFO_0005072
part of: A-AFFY-44

DUSP2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.76334959930013
p value: 0.0483817189368975
refers to: DUSP2
refers to: 204794_at
t statistic: 4.86256366369308

GJC1
type: EnsemblDatabaseReference

211122_s_at
type: EFO_0005072
part of: A-AFFY-44

SELE
type: EnsemblDatabaseReference

SOD2
type: EnsemblDatabaseReference

CREM
type: EnsemblDatabaseReference

202887_s_at
type: EFO_0005072
part of: A-AFFY-44

IRAK2
type: EnsemblDatabaseReference

IL7R UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.94980313889074
p value: 0.0338673774253718
refers to: IL7R
refers to: 205798_at
t statistic: 5.91149567624087

201695_s_at
type: EFO_0005072
part of: A-AFFY-44

GCNT2
type: EnsemblDatabaseReference

PTGS2
type: EnsemblDatabaseReference

206149_at
type: EFO_0005072
part of: A-AFFY-44

ICOS
type: EnsemblDatabaseReference

IL7R
type: EnsemblDatabaseReference

C2CD4A
type: EnsemblDatabaseReference

MMP3 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 6.28228677464927
p value: 0.0233762007439188
refers to: 205828_at
refers to: MMP3
t statistic: 7.1138965782484

CCL4
type: EnsemblDatabaseReference

CCRN4L
type: EnsemblDatabaseReference

INHBA UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.42463311131903
p value: 0.0185143175155631
refers to: INHBA
refers to: 227140_at
t statistic: 8.67181227131139

208744_x_at
type: EFO_0005072
part of: A-AFFY-44

IFRD1
type: EnsemblDatabaseReference

(Assay) GSM579390
type: Assay
has participant: A-AFFY-44

(Assay) GSM579395
type: Assay
has participant: A-AFFY-44

CXCL11 DOWN in 'co-cultured with L. plantarum 299v' vs 'no co-culturing with probiotic bacteria' in 'fresh specimen; PMA/IO stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.37660872006127
p value: 0.0253128948269426
refers to: 211122_s_at
refers to: CXCL11
t statistic: -2.9006594296841

TM4SF1
type: EnsemblDatabaseReference

ZFAND5 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.80378006402796
p value: 0.0338673774253718
refers to: ZFAND5
refers to: 217741_s_at
t statistic: 5.92161383134859

STAT4
type: EnsemblDatabaseReference

235737_at
type: EFO_0005072
part of: A-AFFY-44

204264_at
type: EFO_0005072
part of: A-AFFY-44

209774_x_at
type: EFO_0005072
part of: A-AFFY-44

HOMER1
type: EnsemblDatabaseReference

SYTL3 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.26168843161048
p value: 0.0326248769639204
refers to: 238423_at
refers to: SYTL3
t statistic: 6.11509540625757

IRAK2
type: EnsemblDatabaseReference

HIVEP2
type: EnsemblDatabaseReference

IL13RA2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.21321348390181
p value: 0.0185143175155631
refers to: IL13RA2
refers to: 206172_at
t statistic: 8.75824031710876

ERO1L UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.69334202748731
p value: 0.0326248769639204
refers to: ERO1L
refers to: 222646_s_at
t statistic: 6.23976552165591

BAG3 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.49034944042621
p value: 0.0376606298048909
refers to: BAG3
refers to: 217911_s_at
t statistic: 5.54322414372917

229414_at
type: EFO_0005072
part of: A-AFFY-44

Analysis of 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: MicroarrayDifferentialExpressionAnalysis

LY9 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.00829660270739
p value: 0.0221128206114934
refers to: LY9
refers to: 231124_x_at
t statistic: 7.35536847136368

ICOS
type: EnsemblDatabaseReference

RIPK2
type: EnsemblDatabaseReference

210997_at
type: EFO_0005072
part of: A-AFFY-44

ZNF331
type: EnsemblDatabaseReference

202421_at
type: EFO_0005072
part of: A-AFFY-44

209967_s_at
type: EFO_0005072
part of: A-AFFY-44

226961_at
type: EFO_0005072
part of: A-AFFY-44

CORO2A DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -1.90178766535833
p value: 0.0368927354280889
refers to: CORO2A
refers to: 227177_at
t statistic: -5.64050147133312

CXCL11
type: EnsemblDatabaseReference

225009_at
type: EFO_0005072
part of: A-AFFY-44

204614_at
type: EFO_0005072
part of: A-AFFY-44

LDLR UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.82539798574675
p value: 0.0467643766917889
refers to: 202067_s_at
refers to: LDLR
t statistic: 4.92090222506991

210479_s_at
type: EFO_0005072
part of: A-AFFY-44

220310_at
type: EFO_0005072
part of: A-AFFY-44

207526_s_at
type: EFO_0005072
part of: A-AFFY-44

DDIT4
type: EnsemblDatabaseReference

201626_at
type: EFO_0005072
part of: A-AFFY-44

231124_x_at
type: EFO_0005072
part of: A-AFFY-44

PNP UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.21844607948779
p value: 0.0462268829154002
refers to: 201695_s_at
refers to: PNP
t statistic: 4.94976227674134

209959_at
type: EFO_0005072
part of: A-AFFY-44

BCL2A1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.90645815623734
p value: 0.0422025914372596
refers to: BCL2A1
refers to: 205681_at
t statistic: 5.21994277716501

SLC2A3 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.19876099541539
p value: 0.0326248769639204
refers to: 202497_x_at
refers to: SLC2A3
t statistic: 6.15482944245394

(Sample) stimulus/none
type: EFO_0001461
property type: stimulus
property value: none

SLC2A3
type: EnsemblDatabaseReference

MSMO1
type: EnsemblDatabaseReference

IFRD1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.30621168315315
p value: 0.0368927354280889
refers to: IFRD1
refers to: 202147_s_at
t statistic: 5.67241696660658

EPHA2
type: EnsemblDatabaseReference

GGT6
type: EnsemblDatabaseReference

REL UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.99456838286602
p value: 0.0422245243122849
refers to: REL
refers to: 206036_s_at
t statistic: 5.18559823564992

CD44 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.41888836136875
p value: 0.0422025914372596
refers to: 212014_x_at
refers to: CD44
t statistic: 5.21904821186983

206157_at
type: EFO_0005072
part of: A-AFFY-44

XRN1
type: EnsemblDatabaseReference

FUCA1 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -1.68866050473693
p value: 0.0221128206114934
refers to: 202838_at
refers to: FUCA1
t statistic: -7.51848343587856

204285_s_at
type: EFO_0005072
part of: A-AFFY-44

TUBAL3
type: EnsemblDatabaseReference

STC1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.31839185733898
p value: 0.016164149761719
refers to: 204596_s_at
refers to: STC1
t statistic: 10.4538742498665

INSIG1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.32164313240246
p value: 0.0366632229059748
refers to: INSIG1
refers to: 201627_s_at
t statistic: 5.72469032715934

CLMP
type: EnsemblDatabaseReference

CFTR
type: EnsemblDatabaseReference

ICAM1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 4.57712707911037
p value: 0.039141104289956
refers to: 202638_s_at
refers to: ICAM1
t statistic: 5.46178284027235

205709_s_at
type: EFO_0005072
part of: A-AFFY-44

NKX3-1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.99923649696507
p value: 0.0263806073521423
refers to: NKX3-1
refers to: 209706_at
t statistic: 6.75524616039542

BAG3
type: EnsemblDatabaseReference

1554334_a_at
type: EFO_0005072
part of: A-AFFY-44

SLC35G1
type: EnsemblDatabaseReference

221962_s_at
type: EFO_0005072
part of: A-AFFY-44

205680_at
type: EFO_0005072
part of: A-AFFY-44

ICAM1
type: EnsemblDatabaseReference

PRR15
type: EnsemblDatabaseReference

203140_at
type: EFO_0005072
part of: A-AFFY-44

235745_at
type: EFO_0005072
part of: A-AFFY-44

TACSTD2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.78466184589315
p value: 0.0221128206114934
refers to: TACSTD2
refers to: 202286_s_at
t statistic: 7.35490985697727

(Assay) GSM579387
type: Assay
has participant: A-AFFY-44

PNP
type: EnsemblDatabaseReference

SLC2A3
type: EnsemblDatabaseReference

PDLIM4
type: EnsemblDatabaseReference

PTGS2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 5.39156550685879
p value: 0.016164149761719
refers to: 1554997_a_at
refers to: PTGS2
t statistic: 10.5475237439312

(Assay) GSM579386
type: Assay
has participant: A-AFFY-44

IL1A UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.90343513891028
p value: 0.0185143175155631
refers to: IL1A
refers to: 210118_s_at
t statistic: 8.35484061152443

ADM
type: EnsemblDatabaseReference

AP3S2
type: EnsemblDatabaseReference

CXCL6 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.80724718134794
p value: 0.0185143175155631
refers to: CXCL6
refers to: 206336_at
t statistic: 8.74858747215612

PITPNC1
type: EnsemblDatabaseReference

NPC1
type: EnsemblDatabaseReference

GGT6
type: EnsemblDatabaseReference

PAQR8
type: EnsemblDatabaseReference

PNPLA8
type: EnsemblDatabaseReference

LRRC66
type: EnsemblDatabaseReference

211924_s_at
type: EFO_0005072
part of: A-AFFY-44

CD55 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.86668611548604
p value: 0.0376606298048909
refers to: 1555950_a_at
refers to: CD55
t statistic: 5.54774286974175

201625_s_at
type: EFO_0005072
part of: A-AFFY-44

(Sample) growth condition/no co-culturing with probiotic bacteria
type: EFO_0000001
property type: growth condition
property value: no co-culturing with probiotic bacteria

217741_s_at
type: EFO_0005072
part of: A-AFFY-44

SLC26A2 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.80306771515314
p value: 0.0422025914372596
refers to: SLC26A2
refers to: 224963_at
t statistic: -5.2512241693206

RORA UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.76628686416672
p value: 0.047861354964861
refers to: RORA
refers to: 210426_x_at
t statistic: 4.88929457446503

201109_s_at
type: EFO_0005072
part of: A-AFFY-44

EPHA2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.55482499408409
p value: 0.0440393513382343
refers to: 203499_at
refers to: EPHA2
t statistic: 5.07269450234719

FAM49A
type: EnsemblDatabaseReference

CLMP
type: EnsemblDatabaseReference

1555950_a_at
type: EFO_0005072
part of: A-AFFY-44

SERPINB2 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 5.52831974546016
p value: 0.0185143175155631
refers to: SERPINB2
refers to: 204614_at
t statistic: 8.42782328742963

205798_at
type: EFO_0005072
part of: A-AFFY-44

BAG3
type: EnsemblDatabaseReference

TACSTD2
type: EnsemblDatabaseReference

ICAM1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.88285323378762
p value: 0.0221128206114934
refers to: 202637_s_at
refers to: ICAM1
t statistic: 7.31626726736669

ITPRIP UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.10865545251801
p value: 0.0326248769639204
refers to: ITPRIP
refers to: 225582_at
t statistic: 6.1362141626612

CMTM4 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -1.88160306676877
p value: 0.0326248769639204
refers to: CMTM4
refers to: 225009_at
t statistic: -6.27197141033247

ZFAND5
type: EnsemblDatabaseReference

THAP2
type: EnsemblDatabaseReference

226423_at
type: EFO_0005072
part of: A-AFFY-44

206173_x_at
type: EFO_0005072
part of: A-AFFY-44

223079_s_at
type: EFO_0005072
part of: A-AFFY-44

TSLP UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.18883877640761
p value: 0.0220471361815175
refers to: TSLP
refers to: 235737_at
t statistic: 7.6602455662541

IL1RN
type: EnsemblDatabaseReference

PLAUR UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.00643952373027
p value: 0.0422025914372596
refers to: PLAUR
refers to: 211924_s_at
t statistic: 5.25915973232576

NHSL1 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.86086514578944
p value: 0.0198114692978182
refers to: NHSL1
refers to: 226490_at
t statistic: -7.94743974234215

209706_at
type: EFO_0005072
part of: A-AFFY-44

IDO1 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.45073790102452
p value: 0.0327139039337989
refers to: 210029_at
refers to: IDO1
t statistic: 6.07166358518555

PNPLA8
type: EnsemblDatabaseReference

BCL2L11
type: EnsemblDatabaseReference

LDLR
type: EnsemblDatabaseReference

PDPN UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.32983816731869
p value: 0.0185143175155631
refers to: PDPN
refers to: 221898_at
t statistic: 8.11859143451468

C5orf30
type: EnsemblDatabaseReference

1568634_a_at
type: EFO_0005072
part of: A-AFFY-44

GLS
type: EnsemblDatabaseReference

206036_s_at
type: EFO_0005072
part of: A-AFFY-44

CEMIP
type: EnsemblDatabaseReference

202498_s_at
type: EFO_0005072
part of: A-AFFY-44

VAV3
type: EnsemblDatabaseReference

MMP1
type: EnsemblDatabaseReference

202497_x_at
type: EFO_0005072
part of: A-AFFY-44

DUSP2
type: EnsemblDatabaseReference

204472_at
type: EFO_0005072
part of: A-AFFY-44

SERPINB2
type: EnsemblDatabaseReference

CCL4 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.70784203629414
p value: 0.0487006092663132
refers to: 204103_at
refers to: CCL4
t statistic: 4.85209414296774

RORA UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 1.91882014526976
p value: 0.0440393513382343
refers to: RORA
refers to: 236266_at
t statistic: 5.04771394776712

SLC26A2
type: EnsemblDatabaseReference

NFIL3
type: EnsemblDatabaseReference

IL1A
type: EnsemblDatabaseReference

WSCD1 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.24542539286455
p value: 0.0253779154403032
refers to: WSCD1
refers to: 213155_at
t statistic: -6.8551906337779

GEM
type: EnsemblDatabaseReference

TRIM36
type: EnsemblDatabaseReference

BRI3BP
type: EnsemblDatabaseReference

SGMS2
type: EnsemblDatabaseReference

ZFAND5
type: EnsemblDatabaseReference

222379_at
type: EFO_0005072
part of: A-AFFY-44

204470_at
type: EFO_0005072
part of: A-AFFY-44

221009_s_at
type: EFO_0005072
part of: A-AFFY-44

ARL5B UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 3.02580062713414
p value: 0.0331152268021923
refers to: ARL5B
refers to: 242727_at
t statistic: 5.9865938099866

227058_at
type: EFO_0005072
part of: A-AFFY-44

IL1RN
type: EnsemblDatabaseReference

215034_s_at
type: EFO_0005072
part of: A-AFFY-44

202499_s_at
type: EFO_0005072
part of: A-AFFY-44

CD83
type: EnsemblDatabaseReference

MOGAT2
type: EnsemblDatabaseReference

CDS1 DOWN in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: DecreasedDifferentialExpressionRatio
fold change: -2.1337216060157
p value: 0.0234463298435966
refers to: 205709_s_at
refers to: CDS1
t statistic: -7.08909081399636

A-AFFY-44
type: EFO_0000269

226185_at
type: EFO_0005072
part of: A-AFFY-44

NAPEPLD
type: EnsemblDatabaseReference

Homo sapiens
type: OBI_0100026

VAV3
type: EnsemblDatabaseReference

AGPAT3
type: EnsemblDatabaseReference

BCL6
type: EnsemblDatabaseReference

CYP3A5
type: EnsemblDatabaseReference

205193_at
type: EFO_0005072
part of: A-AFFY-44

UBE2H
type: EnsemblDatabaseReference

PTX3
type: EnsemblDatabaseReference

CD44 UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.54682097419924
p value: 0.039141104289956
refers to: CD44
refers to: 209835_x_at
t statistic: 5.45199854360381

204121_at
type: EFO_0005072
part of: A-AFFY-44

Analysis of 'co-cultured with L. plantarum 299v' vs 'no co-culturing with probiotic bacteria' in 'fresh specimen; PMA/IO stimulation'
type: MicroarrayDifferentialExpressionAnalysis

PBX4
type: EnsemblDatabaseReference

C2CD4A UP in 'frozen specimen' vs 'fresh specimen' in 'no probiotics; no stimulation'
type: IncreasedDifferentialExpressionRatio
fold change: 2.23160635771391
p value: 0.0185143175155631
refers to: 241031_at
refers to: C2CD4A
t statistic: 8.70148044371828

201169_s_at
type: EFO_0005072
part of: A-AFFY-44