(Sample) organism part/flag leaf
type: EFO_0005100
property type: organism part
property value: flag leaf

Os.19971.1.S1_at
type: EFO_0005072
part of: A-AFFY-126

OS04G0175900
type: EnsemblDatabaseReference

OS04G0175900 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.94530976666666
p value: 0.0296311494612928
refers to: OS04G0175900
refers to: Os.10277.1.S1_at
t statistic: 6.79258387097147

OS09G0129500
type: EnsemblDatabaseReference

OS03G0663500
type: EnsemblDatabaseReference

(Assay) GSM570989
type: Assay
has participant: A-AFFY-126

OS10G0490100 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.59626566666667
p value: 0.0296311494612928
refers to: Os.26933.1.S1_x_at
refers to: OS10G0490100
t statistic: 6.80608901152095

OS10G0567900 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.74492568333334
p value: 3.17807060824516E-4
refers to: OS10G0567900
refers to: Os.20614.1.S1_at
t statistic: 11.7431162830987

Os.7966.1.S1_at
type: EFO_0005072
part of: A-AFFY-126

OsAffx.4205.1.S1_x_at
type: EFO_0005072
part of: A-AFFY-126

Os.17912.2.S1_x_at
type: EFO_0005072
part of: A-AFFY-126

Os.459.1.S1_at
type: EFO_0005072
part of: A-AFFY-126

OS01G0692400
type: EnsemblDatabaseReference

OS11G0127000
type: EnsemblDatabaseReference

OS10G0567900
type: EnsemblDatabaseReference

OS12G0611900 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.73384905
p value: 0.0296311494612928
refers to: OS12G0611900
refers to: Os.33273.1.S1_at
t statistic: 6.80215944865088

(Assay) GSM570999
type: Assay
has participant: A-AFFY-126

(Sample) organism/Oryza sativa Japonica Group
type: Oryza sativa Japonica Group
property type: organism
property value: Oryza sativa Japonica Group

OS12G0528801
type: EnsemblDatabaseReference

Os.50213.1.S1_at
type: EFO_0005072
part of: A-AFFY-126

(Assay) GSM570992
type: Assay
has participant: A-AFFY-126

OS04G0677000 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.68670743333333
p value: 3.55312198720255E-4
refers to: OS04G0677000
refers to: Os.50627.1.S1_at
t statistic: 11.3089963297534

(Sample) genotype/wild type genotype
type: EFO_0000001
property type: genotype
property value: wild type genotype

OS04G0397800
type: EnsemblDatabaseReference

OS02G0202200
type: EnsemblDatabaseReference

OS12G0611900
type: EnsemblDatabaseReference

OS01G0339500
type: EnsemblDatabaseReference

OS04G0249600 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.29655793333333
p value: 2.89387920113977E-4
refers to: OS04G0249600
refers to: Os.34982.1.A1_at
t statistic: 12.3510135228004

OS01G0339500 DOWN in 'PSARK::IPT transformed' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.50021771666667
p value: 0.0430479920914084
refers to: OS01G0339500
refers to: Os.17912.2.S1_x_at
t statistic: -6.49960447368173

OS01G0692400 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.82875656666667
p value: 0.0488051555079501
refers to: OS01G0692400
refers to: Os.29043.1.S1_at
t statistic: 6.3957819087295

OS10G0490100
type: EnsemblDatabaseReference

OS10G0490100
type: EnsemblDatabaseReference

(Factor value) GENOTYPE/wild type genotype
type: EFO_0000001
property type: GENOTYPE
property value: wild type genotype

Os.48077.1.A1_at
type: EFO_0005072
part of: A-AFFY-126

OS06G0267900
type: EnsemblDatabaseReference

Os.10277.1.S1_at
type: EFO_0005072
part of: A-AFFY-126

Os.47329.1.A1_at
type: EFO_0005072
part of: A-AFFY-126

Oryza sativa Japonica Group
type: OBI_0100026

OS04G0175900
type: EnsemblDatabaseReference

Os.56966.1.S1_at
type: EFO_0005072
part of: A-AFFY-126

OS03G0663500
type: EnsemblDatabaseReference

OS12G0446900 DOWN in 'PSARK::IPT transformed' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14494828333333
p value: 0.0237598536592056
refers to: OS12G0446900
refers to: Os.48077.1.A1_at
t statistic: -7.05596491171938

OS05G0580200 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.84776016666667
p value: 0.00737480838036783
refers to: Os.56966.1.S1_at
refers to: OS05G0580200
t statistic: 8.07188641320507

OS04G0397800 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.5439778
p value: 0.00416439456297918
refers to: OS04G0397800
refers to: Os.54747.1.S2_at
t statistic: 8.66027543965878

(Sample) age/10
type: EFO_0000001
property type: age
property value: 10

OS10G0567900
type: EnsemblDatabaseReference

OS04G0677000
type: EnsemblDatabaseReference

OS12G0528801
type: EnsemblDatabaseReference

OS05G0209500
type: EnsemblDatabaseReference

OS02G0202200
type: EnsemblDatabaseReference

(Assay) GSM570993
type: Assay
has participant: A-AFFY-126

Os.34982.1.A1_at
type: EFO_0005072
part of: A-AFFY-126

OS11G0127000 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 4.85479556666667
p value: 2.71247974468009E-4
refers to: Os.25164.1.A1_at
refers to: OS11G0127000
t statistic: 12.8422313555451

OS12G0611900
type: EnsemblDatabaseReference

OS03G0663500 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.02951838333333
p value: 0.0296311494612928
refers to: OS03G0663500
refers to: Os.459.1.S1_at
t statistic: 6.8037364393015

OS12G0446900
type: EnsemblDatabaseReference

OS03G0629800
type: EnsemblDatabaseReference

OS03G0629800
type: EnsemblDatabaseReference

OS03G0629800 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 4.02347176666667
p value: 0.00134919908703441
refers to: Os.10266.1.S1_at
refers to: OS03G0629800
t statistic: 9.63306054146243

A-AFFY-126
type: EFO_0000269

OS05G0580200
type: EnsemblDatabaseReference

OS11G0422000
type: EnsemblDatabaseReference

OS02G0202200 DOWN in 'PSARK::IPT transformed' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -3.68347025
p value: 0.00114219197119181
refers to: OS02G0202200
refers to: Os.15304.1.A1_at
t statistic: -9.84755928182024

Os.34982.1.A1_x_at
type: EFO_0005072
part of: A-AFFY-126

(Assay) GSM570994
type: Assay
has participant: A-AFFY-126

OS06G0267900 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.570508
p value: 0.0237598536592056
refers to: OS06G0267900
refers to: Os.50213.1.S1_at
t statistic: 7.06416529060037

Os.14045.1.S1_s_at
type: EFO_0005072
part of: A-AFFY-126

OS05G0209500 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22270185
p value: 0.0237598536592056
refers to: OS05G0209500
refers to: Os.47329.1.A1_at
t statistic: 7.07940618539603

(Assay) GSM570998
type: Assay
has participant: A-AFFY-126

OS04G0677000
type: EnsemblDatabaseReference

OS04G0249600
type: EnsemblDatabaseReference

OS12G0447000
type: EnsemblDatabaseReference

OS09G0129500 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.86732468333333
p value: 0.0237598536592056
refers to: Os.14045.1.S1_s_at
refers to: OS09G0129500
t statistic: 7.15765591532693

OS05G0209500
type: EnsemblDatabaseReference

OS06G0586000 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.65118061666667
p value: 0.0488051555079501
refers to: OS06G0586000
refers to: Os.7966.1.S1_at
t statistic: 6.37380830632593

Os.51375.1.S1_at
type: EFO_0005072
part of: A-AFFY-126

(Assay) GSM570997
type: Assay
has participant: A-AFFY-126

Os.33273.1.S1_at
type: EFO_0005072
part of: A-AFFY-126

Os.50627.1.S1_at
type: EFO_0005072
part of: A-AFFY-126

Os.29043.1.S1_at
type: EFO_0005072
part of: A-AFFY-126

OS12G0446900
type: EnsemblDatabaseReference

OS06G0586000
type: EnsemblDatabaseReference

(Assay) GSM570995
type: Assay
has participant: A-AFFY-126

OS12G0528801 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.96955996666667
p value: 0.0047453479876355
refers to: Os.19971.1.S1_at
refers to: OS12G0528801
t statistic: 8.45022296061304

(Assay) GSM570990
type: Assay
has participant: A-AFFY-126

Os.50256.1.S1_at
type: EFO_0005072
part of: A-AFFY-126

Os.54747.1.S2_at
type: EFO_0005072
part of: A-AFFY-126

OS05G0580200
type: EnsemblDatabaseReference

OS09G0129500
type: EnsemblDatabaseReference

OS11G0422000
type: EnsemblDatabaseReference

(Sample) genotype/PSARK::IPT transformed
type: EFO_0000001
property type: genotype
property value: PSARK::IPT transformed

OS04G0249600 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.98058748333334
p value: 3.17807060824516E-4
refers to: OS04G0249600
refers to: Os.34982.1.A1_x_at
t statistic: 11.7627737937715

OS12G0447000 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 4.58119265
p value: 0.00105935986617393
refers to: Os.50256.1.S1_at
refers to: OS12G0447000
t statistic: 10.0725948231747

OS01G0692400
type: EnsemblDatabaseReference

OS11G0127000
type: EnsemblDatabaseReference

OS11G0422000 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.22950471666667
p value: 0.00102155040823603
refers to: Os.51375.1.S1_at
refers to: OS11G0422000
t statistic: 10.219902648168

(Factor value) GENOTYPE/PSARK::IPT transformed
type: EFO_0000001
property type: GENOTYPE
property value: PSARK::IPT transformed

Os.54747.1.S1_at
type: EFO_0005072
part of: A-AFFY-126

(Assay) GSM570991
type: Assay
has participant: A-AFFY-126

OS04G0677000 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.09933235
p value: 0.0378841571568672
refers to: OS04G0677000
refers to: OsAffx.4205.1.S1_x_at
t statistic: 6.60639126183008

Os.26933.1.S1_x_at
type: EFO_0005072
part of: A-AFFY-126

Os.20614.1.S1_at
type: EFO_0005072
part of: A-AFFY-126

Analysis of 'PSARK::IPT transformed' vs 'wild type'
type: MicroarrayDifferentialExpressionAnalysis

OS04G0397800
type: EnsemblDatabaseReference

OS04G0249600
type: EnsemblDatabaseReference

(Assay) GSM570988
type: Assay
has participant: A-AFFY-126

OS12G0447000
type: EnsemblDatabaseReference

E-GEOD-23211
type: microarray 1colour mrna differential
RO_0002162: Oryza sativa Japonica Group
description: Transgenic rice plants expressing isopentenyltransferase (IPT), an enzyme that catalyzes the rate-limiting step in CK synthesis under the control of SARK, a maturation- and stress-inducible promoter. Increased CK production resulted in sink source alteration and enhanced drought tolerance of the transgenic plants. Flag leaf samples from well-watered (control) and water-stressed (3 days of withholding water) plants were collected for RNA extraction and hybridization on Affymetrix rice microarrays chip.
uses data from: http://identifiers.org/pubmed/21284800

OS01G0339500
type: EnsemblDatabaseReference

Os.25164.1.A1_at
type: EFO_0005072
part of: A-AFFY-126

OS06G0586000
type: EnsemblDatabaseReference

OS04G0397800 UP in 'PSARK::IPT transformed' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 4.44365016666667
p value: 3.52891579532246E-4
refers to: Os.54747.1.S1_at
refers to: OS04G0397800
t statistic: 11.4634184080184

(Assay) GSM570996
type: Assay
has participant: A-AFFY-126

Os.10266.1.S1_at
type: EFO_0005072
part of: A-AFFY-126

Os.15304.1.A1_at
type: EFO_0005072
part of: A-AFFY-126

OS06G0267900
type: EnsemblDatabaseReference