NAPRT
type: EnsemblDatabaseReference

RP11-443P15.2
type: EnsemblDatabaseReference

CCL22 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.31986972895886
p value: 0.0481581533308371
refers to: CCL22
refers to: 207861_at
t statistic: 5.70142064616995

PITPNC1 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00828774716788
p value: 0.0445864069185176
refers to: 219155_at
refers to: PITPNC1
t statistic: -5.91392070073412

222396_at
type: EFO_0005072
part of: A-AFFY-44

FAM3C
type: EnsemblDatabaseReference

OTUD1
type: EnsemblDatabaseReference

241418_at
type: EFO_0005072
part of: A-AFFY-44

217388_s_at
type: EFO_0005072
part of: A-AFFY-44

CDC42EP3 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17730190838122
p value: 0.037339693177556
refers to: CDC42EP3
refers to: 225685_at
t statistic: 6.34560972691499

CDC42EP3
type: EnsemblDatabaseReference

HN1 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.12876692397716
p value: 0.031241558072323
refers to: 222396_at
refers to: HN1
t statistic: 6.9889316444722

201889_at
type: EFO_0005072
part of: A-AFFY-44

ATF1
type: EnsemblDatabaseReference

208868_s_at
type: EFO_0005072
part of: A-AFFY-44

213491_x_at
type: EFO_0005072
part of: A-AFFY-44

RAB2A
type: EnsemblDatabaseReference

225394_s_at
type: EFO_0005072
part of: A-AFFY-44

FAM3C DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.89250189220691
p value: 0.0181500187352977
refers to: 201889_at
refers to: FAM3C
t statistic: -11.4709152807801

238222_at
type: EFO_0005072
part of: A-AFFY-44

227551_at
type: EFO_0005072
part of: A-AFFY-44

DUSP4
type: EnsemblDatabaseReference

TPR
type: EnsemblDatabaseReference

ARL8B
type: EnsemblDatabaseReference

SLC7A11
type: EnsemblDatabaseReference

202307_s_at
type: EFO_0005072
part of: A-AFFY-44

VANGL1 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.34153199552303
p value: 0.0329406676620822
refers to: VANGL1
refers to: 229134_at
t statistic: 6.6421808050012

232341_x_at
type: EFO_0005072
part of: A-AFFY-44

ATF7
type: EnsemblDatabaseReference

BAMBI
type: EnsemblDatabaseReference

RPN2 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1072240856859
p value: 0.0284164648321099
refers to: 213491_x_at
refers to: RPN2
t statistic: -8.13658635139997

PLEKHA3
type: EnsemblDatabaseReference

TNFAIP3
type: EnsemblDatabaseReference

NLK
type: EnsemblDatabaseReference

230300_at
type: EFO_0005072
part of: A-AFFY-44

IL1A UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.47533103283805
p value: 0.0181500187352977
refers to: IL1A
refers to: 210118_s_at
t statistic: 10.9112167372171

230369_at
type: EFO_0005072
part of: A-AFFY-44

CMPK1 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09289771835789
p value: 0.0318002613342011
refers to: CMPK1
refers to: 222448_s_at
t statistic: -6.85889046817837

RRN3
type: EnsemblDatabaseReference

SNAI2 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.31722092407161
p value: 0.0327473942081146
refers to: 213139_at
refers to: SNAI2
t statistic: 6.75327339087202

SORCS1
type: EnsemblDatabaseReference

FGFR1OP2
type: EnsemblDatabaseReference

205207_at
type: EFO_0005072
part of: A-AFFY-44

217678_at
type: EFO_0005072
part of: A-AFFY-44

SSR2
type: EnsemblDatabaseReference

209104_s_at
type: EFO_0005072
part of: A-AFFY-44

LIMS1
type: EnsemblDatabaseReference

TAP1
type: EnsemblDatabaseReference

DUSP4
type: EnsemblDatabaseReference

TIMP3
type: EnsemblDatabaseReference

ARL8B
type: EnsemblDatabaseReference

203665_at
type: EFO_0005072
part of: A-AFFY-44

PAPSS2
type: EnsemblDatabaseReference

ATF1 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.46791914248069
p value: 0.0284164648321099
refers to: ATF1
refers to: 222103_at
t statistic: -8.38456043738226

SLC7A11
type: EnsemblDatabaseReference

FHL1 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.90789469832706
p value: 0.0347441704111359
refers to: 201540_at
refers to: FHL1
t statistic: 6.50182766207251

RIOK2 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.15499779483813
p value: 0.0284164648321099
refers to: RIOK2
refers to: 222663_at
t statistic: 7.67501735037177

NAPRT
type: EnsemblDatabaseReference

DDX58 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 2.55733929595019
p value: 0.0432283515165261
refers to: 222793_at
refers to: DDX58
t statistic: 5.96335776480121

AIM1
type: EnsemblDatabaseReference

ZC3HAV1
type: EnsemblDatabaseReference

MBTPS2 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.25521818284079
p value: 0.0308195998875523
refers to: 226760_at
refers to: MBTPS2
t statistic: -7.05540845415333

NLK
type: EnsemblDatabaseReference

TDRD7 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 2.26930388582827
p value: 0.0386970517220236
refers to: TDRD7
refers to: 213361_at
t statistic: 6.28039377931152

RPN2 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05513897793167
p value: 0.0284164648321099
refers to: RPN2
refers to: 213399_x_at
t statistic: -8.31201442526062

GRAMD3
type: EnsemblDatabaseReference

HABP4
type: EnsemblDatabaseReference

CXCL11 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 2.58668920934835
p value: 0.0284164648321099
refers to: 211122_s_at
refers to: CXCL11
t statistic: 7.62736654296233

RRN3
type: EnsemblDatabaseReference

SORCS1
type: EnsemblDatabaseReference

204748_at
type: EFO_0005072
part of: A-AFFY-44

ZC3HAV1 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 2.05948570750552
p value: 0.0386970517220236
refers to: 220104_at
refers to: ZC3HAV1
t statistic: 6.22134120837612

222448_s_at
type: EFO_0005072
part of: A-AFFY-44

212572_at
type: EFO_0005072
part of: A-AFFY-44

GPR161 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1017091637387
p value: 0.0481032693421761
refers to: 230369_at
refers to: GPR161
t statistic: 5.71631511743232

SORCS1 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2529642917053
p value: 0.0284164648321099
refers to: SORCS1
refers to: 228194_s_at
t statistic: 8.00685917479593

PARP12 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.10855476154217
p value: 0.0480507271800017
refers to: PARP12
refers to: 218543_s_at
t statistic: 5.76589297316043

FGFR1OP2 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.856356989708
p value: 0.0290878240070478
refers to: FGFR1OP2
refers to: 1556283_s_at
t statistic: -7.49737121270567

BTBD1 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04813102762802
p value: 0.0284164648321099
refers to: BTBD1
refers to: 217945_at
t statistic: -7.75755827317363

SSR2
type: EnsemblDatabaseReference

GPR87 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 2.20592886010568
p value: 0.0092111274803954
refers to: 219936_s_at
refers to: GPR87
t statistic: 17.0617391408309

BAMBI UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.31286108344439
p value: 0.0328599045080356
refers to: BAMBI
refers to: 203304_at
t statistic: 6.68287084095639

212687_at
type: EFO_0005072
part of: A-AFFY-44

IL6
type: EnsemblDatabaseReference

222103_at
type: EFO_0005072
part of: A-AFFY-44

218706_s_at
type: EFO_0005072
part of: A-AFFY-44

RAB2A
type: EnsemblDatabaseReference

ZCRB1
type: EnsemblDatabaseReference

222589_at
type: EFO_0005072
part of: A-AFFY-44

225685_at
type: EFO_0005072
part of: A-AFFY-44

PTPRR UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.16933181866854
p value: 0.0284164648321099
refers to: PTPRR
refers to: 210675_s_at
t statistic: 7.65272205821671

226034_at
type: EFO_0005072
part of: A-AFFY-44

ABHD17B
type: EnsemblDatabaseReference

PRKACB
type: EnsemblDatabaseReference

TPR
type: EnsemblDatabaseReference

PRSS23 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.98226861376617
p value: 0.0347441704111359
refers to: PRSS23
refers to: 229441_at
t statistic: 6.47406714238114

203304_at
type: EFO_0005072
part of: A-AFFY-44

NHP2P2
type: EnsemblDatabaseReference

217870_s_at
type: EFO_0005072
part of: A-AFFY-44

ATF7
type: EnsemblDatabaseReference

223784_at
type: EFO_0005072
part of: A-AFFY-44

SSR2 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.6366593959456
p value: 0.0125373462273391
refers to: SSR2
refers to: 200652_at
t statistic: -13.8086444949484

TNFAIP3
type: EnsemblDatabaseReference

PRSS23
type: EnsemblDatabaseReference

GRAMD3 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.15257965668752
p value: 0.0284164648321099
refers to: GRAMD3
refers to: 218706_s_at
t statistic: 8.70704142292122

204952_at
type: EFO_0005072
part of: A-AFFY-44

210118_s_at
type: EFO_0005072
part of: A-AFFY-44

219962_at
type: EFO_0005072
part of: A-AFFY-44

219936_s_at
type: EFO_0005072
part of: A-AFFY-44

SCML1
type: EnsemblDatabaseReference

ACE2 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.43015993578313
p value: 0.0329406676620822
refers to: ACE2
refers to: 219962_at
t statistic: 6.64988417141352

IL6
type: EnsemblDatabaseReference

GPR87
type: EnsemblDatabaseReference

IL6 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 2.52881507235325
p value: 0.0480507271800017
refers to: IL6
refers to: 205207_at
t statistic: 5.75297456386483

PDE3A
type: EnsemblDatabaseReference

TAP1
type: EnsemblDatabaseReference

222793_at
type: EFO_0005072
part of: A-AFFY-44

GDA
type: EnsemblDatabaseReference

KRT34 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 3.14267062767533
p value: 0.0125373462273391
refers to: KRT34
refers to: 206969_at
t statistic: 13.6711298237543

FSTL3 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.41016409323907
p value: 0.0284164648321099
refers to: 203592_s_at
refers to: FSTL3
t statistic: 8.63525954091009

PAPSS2 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.03376434073823
p value: 0.0480647984037531
refers to: PAPSS2
refers to: 203058_s_at
t statistic: 5.7381189143134

TIMP3
type: EnsemblDatabaseReference

ABHD17B
type: EnsemblDatabaseReference

ARL8B UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.03278656374626
p value: 0.0284164648321099
refers to: ARL8B
refers to: 217852_s_at
t statistic: 7.67597391808902

PAPSS2
type: EnsemblDatabaseReference

NHP2P2
type: EnsemblDatabaseReference

223843_at
type: EFO_0005072
part of: A-AFFY-44

222204_s_at
type: EFO_0005072
part of: A-AFFY-44

UBE2Q1
type: EnsemblDatabaseReference

206969_at
type: EFO_0005072
part of: A-AFFY-44

E-GEOD-22259
type: microarray 1colour mrna differential
RO_0002162: Homo sapiens
description: Analysis of HeLa cells following depletion of BRCA1 tumor supressor using RNAi against BRCA1. Results provide insight into the molecular mechanisms underlying loss of the BRCA1 function. Six samples (three control samples and three BRCA1 depleted samples) have been analysed. For the control, the samples derived from the HeLa cells treated with RNAi against GFP were used.
uses data from: http://identifiers.org/pubmed/20103632

AIM1
type: EnsemblDatabaseReference

ZC3HAV1
type: EnsemblDatabaseReference

PRSS23
type: EnsemblDatabaseReference

RP11-443P15.2 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.7008775373121
p value: 0.0290878240070478
refers to: RP11-443P15.2
refers to: 241418_at
t statistic: 7.44371168048071

(Assay) GSM554071
type: Assay
has participant: A-AFFY-44

GRAMD3
type: EnsemblDatabaseReference

HABP4
type: EnsemblDatabaseReference

PARP12
type: EnsemblDatabaseReference

TNFAIP3 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.90003150007928
p value: 0.0284164648321099
refers to: TNFAIP3
refers to: 202644_s_at
t statistic: 7.98357642414036

GPR87
type: EnsemblDatabaseReference

CHD2
type: EnsemblDatabaseReference

ABHD17B UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.04156693700448
p value: 0.037339693177556
refers to: 227551_at
refers to: ABHD17B
t statistic: 6.34167041880541

223370_at
type: EFO_0005072
part of: A-AFFY-44

204434_at
type: EFO_0005072
part of: A-AFFY-44

ZCRB1 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.28065051038847
p value: 0.0254826960355965
refers to: 225394_s_at
refers to: ZCRB1
t statistic: -9.52667369323048

226140_s_at
type: EFO_0005072
part of: A-AFFY-44

230321_at
type: EFO_0005072
part of: A-AFFY-44

208732_at
type: EFO_0005072
part of: A-AFFY-44

ADM UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.21226905964383
p value: 0.0284164648321099
refers to: ADM
refers to: 202912_at
t statistic: 7.64567271653032

ZCRB1
type: EnsemblDatabaseReference

202149_at
type: EFO_0005072
part of: A-AFFY-44

KYNU DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1888394510726
p value: 0.0308195998875523
refers to: KYNU
refers to: 210663_s_at
t statistic: -7.03044526969351

1556283_s_at
type: EFO_0005072
part of: A-AFFY-44

216184_s_at
type: EFO_0005072
part of: A-AFFY-44

PLEKHA3 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.11763014769195
p value: 0.0465592848464165
refers to: 223370_at
refers to: PLEKHA3
t statistic: -5.85269817041955

210663_s_at
type: EFO_0005072
part of: A-AFFY-44

KPNA5
type: EnsemblDatabaseReference

201323_at
type: EFO_0005072
part of: A-AFFY-44

GPR161
type: EnsemblDatabaseReference

PRKACB
type: EnsemblDatabaseReference

LYPLA1
type: EnsemblDatabaseReference

229194_at
type: EFO_0005072
part of: A-AFFY-44

KATNAL1
type: EnsemblDatabaseReference

C1QTNF6
type: EnsemblDatabaseReference

PTGS2 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.72234072292878
p value: 0.0210342351655139
refers to: 1554997_a_at
refers to: PTGS2
t statistic: 10.3809634471328

CCL22
type: EnsemblDatabaseReference

218793_s_at
type: EFO_0005072
part of: A-AFFY-44

PCMTD1
type: EnsemblDatabaseReference

219015_s_at
type: EFO_0005072
part of: A-AFFY-44

PARP12
type: EnsemblDatabaseReference

205011_at
type: EFO_0005072
part of: A-AFFY-44

203058_s_at
type: EFO_0005072
part of: A-AFFY-44

227095_at
type: EFO_0005072
part of: A-AFFY-44

ALG13
type: EnsemblDatabaseReference

PTPRR
type: EnsemblDatabaseReference

SCML1
type: EnsemblDatabaseReference

CMPK1 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.27161101222898
p value: 0.0347441704111359
refers to: CMPK1
refers to: 217870_s_at
t statistic: -6.49417274357524

SPATA2
type: EnsemblDatabaseReference

PDE3A
type: EnsemblDatabaseReference

ACE2
type: EnsemblDatabaseReference

207861_at
type: EFO_0005072
part of: A-AFFY-44

EBNA1BP2
type: EnsemblDatabaseReference

228829_at
type: EFO_0005072
part of: A-AFFY-44

GDA
type: EnsemblDatabaseReference

216583_x_at
type: EFO_0005072
part of: A-AFFY-44

PCMTD1 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02805541368074
p value: 0.0327978407237529
refers to: PCMTD1
refers to: 226119_at
t statistic: -6.70961335459419

LIMS1 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.57725652017839
p value: 0.0181500187352977
refers to: LIMS1
refers to: 212687_at
t statistic: -11.0833323897483

228194_s_at
type: EFO_0005072
part of: A-AFFY-44

226760_at
type: EFO_0005072
part of: A-AFFY-44

VWA5A
type: EnsemblDatabaseReference

LYPD3 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2649304192713
p value: 0.0422493840133291
refers to: LYPD3
refers to: 204952_at
t statistic: 6.01177713612142

LYPLA1
type: EnsemblDatabaseReference

VANGL1
type: EnsemblDatabaseReference

UBE2Q1
type: EnsemblDatabaseReference

GKN2 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 4.06273197413268
p value: 0.0181500187352977
refers to: GKN2
refers to: 238222_at
t statistic: 11.552031341192

DDX58
type: EnsemblDatabaseReference

RIMS1
type: EnsemblDatabaseReference

NEDD9
type: EnsemblDatabaseReference

LEPROT
type: EnsemblDatabaseReference

ALG13 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1156367643095
p value: 0.0480690336169341
refers to: 222808_at
refers to: ALG13
t statistic: -5.73098115235127

KYNU DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.79793468133166
p value: 0.0249241903165497
refers to: 210662_at
refers to: KYNU
t statistic: -9.67751155704642

LEPROT UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.32922873687469
p value: 0.0471756284718392
refers to: LEPROT
refers to: 227095_at
t statistic: 5.82415362139972

PTGS2
type: EnsemblDatabaseReference

HABP4 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14671266977651
p value: 0.0394508427436977
refers to: HABP4
refers to: 232341_x_at
t statistic: -6.15131731593737

NHP2 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.31113539034587
p value: 0.0284164648321099
refers to: 209104_s_at
refers to: NHP2
t statistic: -7.75065105103983

HN1
type: EnsemblDatabaseReference

210675_s_at
type: EFO_0005072
part of: A-AFFY-44

RIMS1 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.29969324821803
p value: 0.049067986253953
refers to: RIMS1
refers to: 216184_s_at
t statistic: -5.67543407872573

SLC31A2
type: EnsemblDatabaseReference

CHD2
type: EnsemblDatabaseReference

GABARAPL1 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.32757075743741
p value: 0.0340663813224069
refers to: 208868_s_at
refers to: GABARAPL1
t statistic: 6.57518933341387

Homo sapiens
type: OBI_0100026

STK38L
type: EnsemblDatabaseReference

TOR1AIP2 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.07642018676763
p value: 0.0480507271800017
refers to: TOR1AIP2
refers to: 230321_at
t statistic: 5.76111099935293

236300_at
type: EFO_0005072
part of: A-AFFY-44

220104_at
type: EFO_0005072
part of: A-AFFY-44

(Assay) GSM554070
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has participant: A-AFFY-44

222480_at
type: EFO_0005072
part of: A-AFFY-44

IFI44
type: EnsemblDatabaseReference

212449_s_at
type: EFO_0005072
part of: A-AFFY-44

AIM1 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 2.01928145650139
p value: 0.0181500187352977
refers to: AIM1
refers to: 212543_at
t statistic: 10.8136080368504

223571_at
type: EFO_0005072
part of: A-AFFY-44

BTBD1
type: EnsemblDatabaseReference

RAB2A DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00230167210025
p value: 0.0308195998875523
refers to: RAB2A
refers to: 208732_at
t statistic: -7.05291066593147

PSMA5
type: EnsemblDatabaseReference

EBNA1BP2 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0269436827868
p value: 0.0327978407237529
refers to: 201323_at
refers to: EBNA1BP2
t statistic: -6.71279710557832

MBTPS2
type: EnsemblDatabaseReference

226707_at
type: EFO_0005072
part of: A-AFFY-44

DDX58
type: EnsemblDatabaseReference

KPNA5
type: EnsemblDatabaseReference

GPR161
type: EnsemblDatabaseReference

211122_s_at
type: EFO_0005072
part of: A-AFFY-44

LEPROT
type: EnsemblDatabaseReference

ADM
type: EnsemblDatabaseReference

KATNAL1
type: EnsemblDatabaseReference

C1QTNF6
type: EnsemblDatabaseReference

(Assay) GSM554075
type: Assay
has participant: A-AFFY-44

PTGS2
type: EnsemblDatabaseReference

SNAI2
type: EnsemblDatabaseReference

CCL22
type: EnsemblDatabaseReference

PCMTD1
type: EnsemblDatabaseReference

A-AFFY-44
type: EFO_0000269

RPN2 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.12079607884426
p value: 0.0284164648321099
refers to: 208689_s_at
refers to: RPN2
t statistic: -7.82915733865734

SLC31A2
type: EnsemblDatabaseReference

RPN2
type: EnsemblDatabaseReference

219155_at
type: EFO_0005072
part of: A-AFFY-44

TOR1AIP2
type: EnsemblDatabaseReference

202912_at
type: EFO_0005072
part of: A-AFFY-44

(Factor value) RNA_INTERFERENCE/BRCA1 RNAi
type: EFO_0000001
property type: RNA_INTERFERENCE
property value: BRCA1 RNAi

ALG13
type: EnsemblDatabaseReference

200652_at
type: EFO_0005072
part of: A-AFFY-44

HMOX1 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.98069582144846
p value: 0.0394508427436977
refers to: HMOX1
refers to: 203665_at
t statistic: 6.14615575888847

PTPRR
type: EnsemblDatabaseReference

229441_at
type: EFO_0005072
part of: A-AFFY-44

SPATA2
type: EnsemblDatabaseReference

LYPLA1 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.13090217168853
p value: 0.0284164648321099
refers to: 212449_s_at
refers to: LYPLA1
t statistic: -8.13130214325749

SCARA3
type: EnsemblDatabaseReference

LYPD3
type: EnsemblDatabaseReference

ACE2
type: EnsemblDatabaseReference

IFI44
type: EnsemblDatabaseReference

PRSS23 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 2.22971368978657
p value: 0.0235404613132434
refers to: PRSS23
refers to: 226279_at
t statistic: 9.8960770880385

EBNA1BP2
type: EnsemblDatabaseReference

ZC3HAV1 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.26686311718045
p value: 0.0480507271800017
refers to: ZC3HAV1
refers to: 225634_at
t statistic: 5.75268035675516

225634_at
type: EFO_0005072
part of: A-AFFY-44

C1QTNF6 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17075295830755
p value: 0.0318002613342011
refers to: 223571_at
refers to: C1QTNF6
t statistic: 6.86641956601438

TMEM27 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 2.34201188853405
p value: 0.0284164648321099
refers to: TMEM27
refers to: 223784_at
t statistic: 8.13905359545985

STK38L UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4456613685935
p value: 0.0308195998875523
refers to: STK38L
refers to: 212565_at
t statistic: 7.07730353620367

MBTPS2
type: EnsemblDatabaseReference

SPATA2 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.53861965737774
p value: 0.0347441704111359
refers to: 204434_at
refers to: SPATA2
t statistic: 6.5155610465176

FSTL3
type: EnsemblDatabaseReference

VWA5A
type: EnsemblDatabaseReference

ACE2 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.52707328410274
p value: 0.0290878240070478
refers to: 222257_s_at
refers to: ACE2
t statistic: 7.37227615250432

PITPNC1
type: EnsemblDatabaseReference

VANGL1
type: EnsemblDatabaseReference

204204_at
type: EFO_0005072
part of: A-AFFY-44

RIMS1
type: EnsemblDatabaseReference

NEDD9
type: EnsemblDatabaseReference

1554997_a_at
type: EFO_0005072
part of: A-AFFY-44

208689_s_at
type: EFO_0005072
part of: A-AFFY-44

OTUD1 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.43060898115032
p value: 0.0284164648321099
refers to: OTUD1
refers to: 226140_s_at
t statistic: 8.12502498736383

IL1A
type: EnsemblDatabaseReference

KYNU DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.19253684152137
p value: 0.0290878240070478
refers to: KYNU
refers to: 217388_s_at
t statistic: -7.37624331990437

TIMP3 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.42879973197999
p value: 0.0284164648321099
refers to: TIMP3
refers to: 201150_s_at
t statistic: 8.50943453556715

1554014_at
type: EFO_0005072
part of: A-AFFY-44

212543_at
type: EFO_0005072
part of: A-AFFY-44

NAPRT DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.20727070943973
p value: 0.0305762439894803
refers to: 226707_at
refers to: NAPRT
t statistic: -7.17438906215126

HN1
type: EnsemblDatabaseReference

KYNU
type: EnsemblDatabaseReference

RIOK2
type: EnsemblDatabaseReference

KRT34
type: EnsemblDatabaseReference

UBE2Q1 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.03960270212839
p value: 0.0432283515165261
refers to: UBE2Q1
refers to: 222480_at
t statistic: 5.96270783809722

STK38L
type: EnsemblDatabaseReference

CMPK1
type: EnsemblDatabaseReference

FHL1
type: EnsemblDatabaseReference

KATNAL1 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.75854482365853
p value: 0.0224965511030045
refers to: KATNAL1
refers to: 227713_at
t statistic: 10.1111654674613

222257_s_at
type: EFO_0005072
part of: A-AFFY-44

TMEM27
type: EnsemblDatabaseReference

TDRD7
type: EnsemblDatabaseReference

213139_at
type: EFO_0005072
part of: A-AFFY-44

FSTL3
type: EnsemblDatabaseReference

(Assay) GSM554074
type: Assay
has participant: A-AFFY-44

202741_at
type: EFO_0005072
part of: A-AFFY-44

CHD2 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06859390999251
p value: 0.0396179879300374
refers to: CHD2
refers to: 1554014_at
t statistic: -6.12956166892584

BTBD1
type: EnsemblDatabaseReference

(Assay) GSM554073
type: Assay
has participant: A-AFFY-44

NHP2
type: EnsemblDatabaseReference

IFI44 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.99533813062835
p value: 0.0422493840133291
refers to: IFI44
refers to: 214059_at
t statistic: 6.01756285789353

PSMA5
type: EnsemblDatabaseReference

PDE3A UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.32621929332014
p value: 0.0306883550560817
refers to: PDE3A
refers to: 236300_at
t statistic: 7.13234192549937

222808_at
type: EFO_0005072
part of: A-AFFY-44

TNFAIP3 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.77587174292782
p value: 0.0284164648321099
refers to: 202643_s_at
refers to: TNFAIP3
t statistic: 7.69493019311997

(Factor value) RNA_INTERFERENCE/control
type: EFO_0000001
property type: RNA_INTERFERENCE
property value: control

HMOX1
type: EnsemblDatabaseReference

ADM
type: EnsemblDatabaseReference

PSMA5 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 2.30900639979607
p value: 0.0181500187352977
refers to: PSMA5
refers to: 230300_at
t statistic: 10.9289333511872

203592_s_at
type: EFO_0005072
part of: A-AFFY-44

PRKACB DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.51961928178341
p value: 0.0284164648321099
refers to: PRKACB
refers to: 202741_at
t statistic: -8.86415848738612

SNAI2
type: EnsemblDatabaseReference

ATF7 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10488889210012
p value: 0.0284164648321099
refers to: ATF7
refers to: 228829_at
t statistic: -7.76892706104736

SLC31A2 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.83165691527747
p value: 0.0305762439894803
refers to: SLC31A2
refers to: 204204_at
t statistic: 7.19381681783134

229134_at
type: EFO_0005072
part of: A-AFFY-44

RIOK2
type: EnsemblDatabaseReference

(Sample) organism/Homo sapiens
type: Homo sapiens
property type: organism
property value: Homo sapiens

RPN2
type: EnsemblDatabaseReference

TOR1AIP2
type: EnsemblDatabaseReference

PCGF5
type: EnsemblDatabaseReference

217945_at
type: EFO_0005072
part of: A-AFFY-44

CXCL11
type: EnsemblDatabaseReference

212565_at
type: EFO_0005072
part of: A-AFFY-44

RRN3 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.05338773074026
p value: 0.0386970517220236
refers to: RRN3
refers to: 222204_s_at
t statistic: 6.26615109248076

201540_at
type: EFO_0005072
part of: A-AFFY-44

SCARA3
type: EnsemblDatabaseReference

NEDD9 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.45714112093629
p value: 0.0318002613342011
refers to: NEDD9
refers to: 202149_at
t statistic: 6.88234943798438

LYPD3
type: EnsemblDatabaseReference

GABARAPL1
type: EnsemblDatabaseReference

GKN2
type: EnsemblDatabaseReference

TPR UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.07176200220586
p value: 0.0480507271800017
refers to: 228709_at
refers to: TPR
t statistic: 5.76276304346155

RP11-443P15.2
type: EnsemblDatabaseReference

VWA5A UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.34183236884272
p value: 0.0284164648321099
refers to: VWA5A
refers to: 205011_at
t statistic: 8.75762089711651

PTGS2 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 2.47421662216815
p value: 0.0284164648321099
refers to: PTGS2
refers to: 204748_at
t statistic: 8.98259005464872

NHP2P2 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.20523668746499
p value: 0.0308195998875523
refers to: 216583_x_at
refers to: NHP2P2
t statistic: -7.02182777583725

218543_s_at
type: EFO_0005072
part of: A-AFFY-44

(Sample) cell line/HeLa
type: EFO_0001185
property type: cell line
property value: HeLa

FAM3C
type: EnsemblDatabaseReference

PITPNC1
type: EnsemblDatabaseReference

ALG13 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.52748046503581
p value: 0.0304400352707542
refers to: ALG13
refers to: 219015_s_at
t statistic: -7.25292598628848

IL1A
type: EnsemblDatabaseReference

KPNA5 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.26015982357644
p value: 0.0305762439894803
refers to: KPNA5
refers to: 229317_at
t statistic: -7.18617122563112

TAP1 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4071510161023
p value: 0.0315569858396336
refers to: TAP1
refers to: 202307_s_at
t statistic: 6.96062597380608

213399_x_at
type: EFO_0005072
part of: A-AFFY-44

PCGF5
type: EnsemblDatabaseReference

214059_at
type: EFO_0005072
part of: A-AFFY-44

KYNU
type: EnsemblDatabaseReference

202458_at
type: EFO_0005072
part of: A-AFFY-44

KRT34
type: EnsemblDatabaseReference

202643_s_at
type: EFO_0005072
part of: A-AFFY-44

213361_at
type: EFO_0005072
part of: A-AFFY-44

CMPK1
type: EnsemblDatabaseReference

FHL1
type: EnsemblDatabaseReference

226279_at
type: EFO_0005072
part of: A-AFFY-44

Analysis of 'BRCA1 RNAi' vs 'control'
type: MicroarrayDifferentialExpressionAnalysis

TMEM27
type: EnsemblDatabaseReference

TDRD7
type: EnsemblDatabaseReference

229317_at
type: EFO_0005072
part of: A-AFFY-44

GDA UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.18937531428335
p value: 0.0284164648321099
refers to: GDA
refers to: 1569555_at
t statistic: 8.16282552317621

227713_at
type: EFO_0005072
part of: A-AFFY-44

217852_s_at
type: EFO_0005072
part of: A-AFFY-44

1569555_at
type: EFO_0005072
part of: A-AFFY-44

(Assay) GSM554072
type: Assay
has participant: A-AFFY-44

NLK DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09380061880933
p value: 0.0329406676620822
refers to: 222589_at
refers to: NLK
t statistic: -6.64732864098803

NHP2
type: EnsemblDatabaseReference

SCARA3 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.181835609518
p value: 0.0290878240070478
refers to: SCARA3
refers to: 223843_at
t statistic: -7.52734368423417

DUSP4 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2664820939226
p value: 0.0284164648321099
refers to: 226034_at
refers to: DUSP4
t statistic: 8.16329818406749

BAMBI
type: EnsemblDatabaseReference

222663_at
type: EFO_0005072
part of: A-AFFY-44

210662_at
type: EFO_0005072
part of: A-AFFY-44

PLEKHA3
type: EnsemblDatabaseReference

STK38L UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.46897649435858
p value: 0.0304400352707542
refers to: 212572_at
refers to: STK38L
t statistic: 7.23885224441645

OTUD1
type: EnsemblDatabaseReference

HMOX1
type: EnsemblDatabaseReference

226119_at
type: EFO_0005072
part of: A-AFFY-44

CDC42EP3
type: EnsemblDatabaseReference

FGFR1OP2
type: EnsemblDatabaseReference

228709_at
type: EFO_0005072
part of: A-AFFY-44

202644_s_at
type: EFO_0005072
part of: A-AFFY-44

SLC7A11 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 2.83440731760164
p value: 0.0318002613342011
refers to: 217678_at
refers to: SLC7A11
t statistic: 6.91916928577633

ATF1
type: EnsemblDatabaseReference

PRSS23 UP in 'BRCA1 RNAi' vs 'control'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17405507508697
p value: 0.0290878240070478
refers to: 202458_at
refers to: PRSS23
t statistic: 7.37067311684093

CXCL11
type: EnsemblDatabaseReference

PCGF5 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.37376984228011
p value: 0.0284164648321099
refers to: PCGF5
refers to: 229194_at
t statistic: -8.26649665473994

LIMS1
type: EnsemblDatabaseReference

SCML1 DOWN in 'BRCA1 RNAi' vs 'control'
type: DecreasedDifferentialExpressionRatio
fold change: -1.55281167658548
p value: 0.0369437601425648
refers to: 218793_s_at
refers to: SCML1
t statistic: -6.37455954636845

201150_s_at
type: EFO_0005072
part of: A-AFFY-44

GABARAPL1
type: EnsemblDatabaseReference

GKN2
type: EnsemblDatabaseReference