ATBCB
type: EnsemblDatabaseReference

AT1G79700
type: EnsemblDatabaseReference

KING1 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1643769
p value: 0.0486527218257481
refers to: KING1
refers to: 252323_at
t statistic: 4.51619633173365

AT1G62480
type: EnsemblDatabaseReference

252870_at
type: EFO_0005072
part of: A-AFFY-2

253317_at
type: EFO_0005072
part of: A-AFFY-2

246028_at
type: EFO_0005072
part of: A-AFFY-2

AT1G05340 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.246399
p value: 0.0374776479817757
refers to: 264580_at
refers to: AT1G05340
t statistic: 5.04757560409293

AT3G14060
type: EnsemblDatabaseReference

B5 #1
type: EnsemblDatabaseReference

AGT3
type: EnsemblDatabaseReference

261825_at
type: EFO_0005072
part of: A-AFFY-2

UGT89C1
type: EnsemblDatabaseReference

ATSDI1
type: EnsemblDatabaseReference

253165_at
type: EFO_0005072
part of: A-AFFY-2

SEX1
type: EnsemblDatabaseReference

AGP9 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.29146366666667
p value: 0.0277128860147845
refers to: AGP9
refers to: 266588_at
t statistic: -5.57708595060336

AT5G12420 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.26614516666667
p value: 0.019746078247345
refers to: AT5G12420
refers to: 245181_at
t statistic: 6.4039233897401

AT1G04040
type: EnsemblDatabaseReference

ENODL19
type: EnsemblDatabaseReference

(Assay) GSM477887
type: Assay
has participant: A-AFFY-2

260986_at
type: EFO_0005072
part of: A-AFFY-2

ALDH7B4
type: EnsemblDatabaseReference

BGAL8
type: EnsemblDatabaseReference

BAT5 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.78678863333333
p value: 0.0431881093802582
refers to: BAT5
refers to: 254862_at
t statistic: -4.84156028217319

FLA8
type: EnsemblDatabaseReference

264529_at
type: EFO_0005072
part of: A-AFFY-2

258402_at
type: EFO_0005072
part of: A-AFFY-2

246215_at
type: EFO_0005072
part of: A-AFFY-2

ELP DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.26079846666667
p value: 0.0351838885748605
refers to: ELP
refers to: 264371_at
t statistic: -5.14961043277492

AT1G80160
type: EnsemblDatabaseReference

DYL1
type: EnsemblDatabaseReference

TAT3 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.08887966666667
p value: 0.0230408183761979
refers to: 263539_at
refers to: TAT3
t statistic: -6.03946401749087

SWEET17
type: EnsemblDatabaseReference

GST30
type: EnsemblDatabaseReference

AKN2
type: EnsemblDatabaseReference

AT1G25400 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.69114253333333
p value: 0.0449291668949051
refers to: AT1G25400
refers to: 255733_at
t statistic: 4.72201351950314

AT1G66760 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.4060767
p value: 0.00904928026608426
refers to: AT1G66760
refers to: 256324_at
t statistic: 8.68945440601211

CYP96A4
type: EnsemblDatabaseReference

AT2G33830 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.1252251
p value: 0.00406305213039784
refers to: 267461_at
refers to: AT2G33830
t statistic: 14.3974954314717

ERD5 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.39877526666667
p value: 0.0351838885748605
refers to: ERD5
refers to: 257315_at
t statistic: 5.2159316566154

AT4G35320
type: EnsemblDatabaseReference

SVL1
type: EnsemblDatabaseReference

Analysis of 'ptpkis2 mutation' vs 'wild type'
type: MicroarrayDifferentialExpressionAnalysis

264514_at
type: EFO_0005072
part of: A-AFFY-2

AT4G35320 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1578321
p value: 0.0465343817308
refers to: AT4G35320
refers to: 253165_at
t statistic: -4.64806192843608

BAT5
type: EnsemblDatabaseReference

AT2G30600 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.7554335
p value: 0.00904928026608426
refers to: 267524_at
refers to: AT2G30600
t statistic: 8.77369621046672

AKINBETA1
type: EnsemblDatabaseReference

BGL1
type: EnsemblDatabaseReference

STP1 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.49616383333333
p value: 0.0107083261704166
refers to: STP1
refers to: 262456_at
t statistic: 7.86553223211394

260015_at
type: EFO_0005072
part of: A-AFFY-2

264436_at
type: EFO_0005072
part of: A-AFFY-2

AT3G15450
type: EnsemblDatabaseReference

BGAL3 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.5663646
p value: 0.0351838885748605
refers to: BGAL3
refers to: 253090_at
t statistic: -5.15069941124942

248353_at
type: EFO_0005072
part of: A-AFFY-2

GRP3S UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.81419243333334
p value: 0.0476089315626077
refers to: GRP3S
refers to: 263046_at
t statistic: 4.57973319002073

ALDH7B4 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.3001676
p value: 0.0379690576246403
refers to: 263157_at
refers to: ALDH7B4
t statistic: 5.01187062435975

B5 #1 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.2596884
p value: 0.0351838885748605
refers to: B5 #1
refers to: 266326_at
t statistic: -5.19501993166841

AT1G80160 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.09515513333333
p value: 0.0459625289490695
refers to: AT1G80160
refers to: 262047_at
t statistic: 4.69028443556711

ATRL5
type: EnsemblDatabaseReference

KING1
type: EnsemblDatabaseReference

AT1G75900
type: EnsemblDatabaseReference

263539_at
type: EFO_0005072
part of: A-AFFY-2

ASN1
type: EnsemblDatabaseReference

AT1G13650 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.6999028
p value: 0.0479247899008124
refers to: AT1G13650
refers to: 256096_at
t statistic: -4.54440637925539

AT1G13650
type: EnsemblDatabaseReference

AT5G12420
type: EnsemblDatabaseReference

AT3G54400
type: EnsemblDatabaseReference

267524_at
type: EFO_0005072
part of: A-AFFY-2

251642_at
type: EFO_0005072
part of: A-AFFY-2

CCL
type: EnsemblDatabaseReference

(Sample) genotype/wild type genotype
type: EFO_0000001
property type: genotype
property value: wild type genotype

AGT3 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.70666453333333
p value: 0.0328187788910963
refers to: AGT3
refers to: 267035_at
t statistic: 5.35291491555043

252234_at
type: EFO_0005072
part of: A-AFFY-2

264078_at
type: EFO_0005072
part of: A-AFFY-2

AKR4C8
type: EnsemblDatabaseReference

AT2G33830
type: EnsemblDatabaseReference

STP1
type: EnsemblDatabaseReference

AT5G20700 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.47173273333333
p value: 0.0386713503253687
refers to: AT5G20700
refers to: 245993_at
t statistic: -4.97268597841491

XTH8
type: EnsemblDatabaseReference

AT1G72060
type: EnsemblDatabaseReference

E-GEOD-19260
type: microarray 1colour mrna differential
RO_0002162: Arabidopsis thaliana
description: In starchless mutants of Arabidopsis, pgm, and wild type, Col0, there are small differences in transcript levels at the end of the day, but large differences at the end of the night. Many of the transcripts of genes involved in biosynthesis and growth are repressed in the pgm mutant (Thimm et al., 2004). It is hypothesized that a transient depletion in sugars at the end of the night inhibits carbon utilization at the beginning of the day (Gibon et al., 2004). In order to test if the same inhibition of transcripts involved in biosynthesis and growth also occurs in starch excess mutants of Arabidopsis, Affymetrix arrays will be generated for WT (Col0), and the following mutants: sex4-3 (Salk 102567), ptpkis2 (Salk 053285), and sex1-3 (Yu et al., 2001). WT, sex4-3, and ptpkis2 plants were grown for 30 days and sex1-3 plants were grown for 36 days. All plants were grown in a growth chamber with a 12 hour photoperiod, quantum flux 100 mol m-2s-1, relative humidity was at least 75%, and a constant temperature of 20oC. Three leaves from 8 different plants of each genotype were harvested using a green safe lamp 0.5 hours before the lights came on in the morning and immediately frozen in LN2. Leaf material was powered using a mortar and pestle and RNA was extracted using a Purescript RNA isolation kit (Gentra Systems, MN, USA). Samples were then treated with DNaseI (Invitrogen, CA, USA). 12 samples were used in this experiment.
uses data from: pubmed

257264_at
type: EFO_0005072
part of: A-AFFY-2

AT1G75900 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0248548
p value: 0.0449291668949051
refers to: AT1G75900
refers to: 262682_at
t statistic: -4.73634313865506

AT1G62480 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.46885756666667
p value: 0.0328187788910963
refers to: AT1G62480
refers to: 265116_at
t statistic: 5.3729524208332

251395_at
type: EFO_0005072
part of: A-AFFY-2

UGE1
type: EnsemblDatabaseReference

245181_at
type: EFO_0005072
part of: A-AFFY-2

GA4
type: EnsemblDatabaseReference

245993_at
type: EFO_0005072
part of: A-AFFY-2

AtSIP2 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.1174008
p value: 0.0431881093802582
refers to: 251642_at
refers to: AtSIP2
t statistic: 4.83341869970926

263157_at
type: EFO_0005072
part of: A-AFFY-2

260664_at
type: EFO_0005072
part of: A-AFFY-2

AT1G10140
type: EnsemblDatabaseReference

ATSDI1 UP in 'ptpkis2 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.31584936666667
p value: 0.0163128127094569
refers to: ATSDI1
refers to: 248676_at
t statistic: 9.06995961060817

AT4G33960
type: EnsemblDatabaseReference

QQS
type: EnsemblDatabaseReference

AT4G37180
type: EnsemblDatabaseReference

BGAL3
type: EnsemblDatabaseReference

CRRSP38 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.41138386666667
p value: 0.00904928026608426
refers to: CRRSP38
refers to: 257264_at
t statistic: 8.85671307468905

CCOAMT
type: EnsemblDatabaseReference

AT1G25400
type: EnsemblDatabaseReference

GRP3S
type: EnsemblDatabaseReference

AT3G15630
type: EnsemblDatabaseReference

261957_at
type: EFO_0005072
part of: A-AFFY-2

AT2G20670 DOWN in 'ptpkis2 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.87045156666666
p value: 0.0238278937009737
refers to: AT2G20670
refers to: 265387_at
t statistic: -7.74739391161446

AT4G30020
type: EnsemblDatabaseReference

264467_at
type: EFO_0005072
part of: A-AFFY-2

AT1G79700
type: EnsemblDatabaseReference

251524_at
type: EFO_0005072
part of: A-AFFY-2

AT1G62480
type: EnsemblDatabaseReference

CYP83A1
type: EnsemblDatabaseReference

IPMI1
type: EnsemblDatabaseReference

256096_at
type: EFO_0005072
part of: A-AFFY-2

246099_at
type: EFO_0005072
part of: A-AFFY-2

AGT3
type: EnsemblDatabaseReference

ATMYBL2 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1899715
p value: 0.0465029799176507
refers to: ATMYBL2
refers to: 259751_at
t statistic: 4.65880382964474

AT4G35320 UP in 'ptpkis2 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.18485936666667
p value: 0.0407811726187345
refers to: AT4G35320
refers to: 253165_at
t statistic: 6.57444419909436

UGT89C1
type: EnsemblDatabaseReference

PLP2
type: EnsemblDatabaseReference

257315_at
type: EFO_0005072
part of: A-AFFY-2

245668_at
type: EFO_0005072
part of: A-AFFY-2

UGT89C1 UP in 'ptpkis2 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.72466003333333
p value: 0.0238278937009737
refers to: UGT89C1
refers to: 260955_at
t statistic: 7.52483786417836

(Assay) GSM477884
type: Assay
has participant: A-AFFY-2

251899_at
type: EFO_0005072
part of: A-AFFY-2

264580_at
type: EFO_0005072
part of: A-AFFY-2

AT1G04040
type: EnsemblDatabaseReference

AT1G09500
type: EnsemblDatabaseReference

AT1G30820
type: EnsemblDatabaseReference

BGAL8
type: EnsemblDatabaseReference

AT5G44530 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.50873973333333
p value: 0.0100593737751923
refers to: 249059_at
refers to: AT5G44530
t statistic: -8.20934084631579

AT1G76590
type: EnsemblDatabaseReference

CCOAMT UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.85792513333333
p value: 0.0145792083902862
refers to: CCOAMT
refers to: 260015_at
t statistic: 7.19293920270809

ATBCAT-2
type: EnsemblDatabaseReference

249059_at
type: EFO_0005072
part of: A-AFFY-2

AT2G05540 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.05954003333333
p value: 0.00904928026608426
refers to: AT2G05540
refers to: 265511_at
t statistic: 9.40393122072468

FLA8 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.20673713333333
p value: 0.0486527218257481
refers to: FLA8
refers to: 251395_at
t statistic: -4.51264718313453

266588_at
type: EFO_0005072
part of: A-AFFY-2

FLA8
type: EnsemblDatabaseReference

267523_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) GSM477894
type: Assay
has participant: A-AFFY-2

262456_at
type: EFO_0005072
part of: A-AFFY-2

AT5G44530
type: EnsemblDatabaseReference

DYL1
type: EnsemblDatabaseReference

CYP83A1 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -3.25561053333333
p value: 0.0107083261704166
refers to: 254687_at
refers to: CYP83A1
t statistic: -7.8571822882821

GST30
type: EnsemblDatabaseReference

AKN2
type: EnsemblDatabaseReference

265511_at
type: EFO_0005072
part of: A-AFFY-2

AKINBETA1 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.48014
p value: 0.00904928026608426
refers to: 246028_at
refers to: AKINBETA1
t statistic: 8.6102971515248

AT2G20670
type: EnsemblDatabaseReference

257832_at
type: EFO_0005072
part of: A-AFFY-2

QQS DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.09974316666667
p value: 0.0142085428815127
refers to: QQS
refers to: 256940_at
t statistic: -7.29350369194143

ATMYBL2
type: EnsemblDatabaseReference

AT3G21190
type: EnsemblDatabaseReference

(Assay) GSM477895
type: Assay
has participant: A-AFFY-2

GRXS11 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.3568464
p value: 0.0198941732186248
refers to: GRXS11
refers to: 260831_at
t statistic: -6.35728808936245

AT1G10140 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.73943316666667
p value: 0.0177623773464175
refers to: AT1G10140
refers to: 264467_at
t statistic: 6.71015051885478

GA4 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.64049503333333
p value: 0.010535037891077
refers to: GA4
refers to: 261768_at
t statistic: -8.05418388968355

265387_at
type: EFO_0005072
part of: A-AFFY-2

IPMI1 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.68906876666667
p value: 0.0230408183761979
refers to: IPMI1
refers to: 251524_at
t statistic: -6.03774835572324

PCNA2
type: EnsemblDatabaseReference

ATMGL
type: EnsemblDatabaseReference

TBL26
type: EnsemblDatabaseReference

AT3G15450
type: EnsemblDatabaseReference

TBL26 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.26609133333333
p value: 0.0142085428815127
refers to: TBL26
refers to: 255604_at
t statistic: -7.27202075118948

ATPSK4
type: EnsemblDatabaseReference

ATSDI1 UP in 'sex4-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.9312012
p value: 0.0293016899964612
refers to: ATSDI1
refers to: 248676_at
t statistic: 9.45144466405468

AT2G05540
type: EnsemblDatabaseReference

259977_at
type: EFO_0005072
part of: A-AFFY-2

259751_at
type: EFO_0005072
part of: A-AFFY-2

CCL UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.99808076666667
p value: 0.0234546226567651
refers to: CCL
refers to: 257832_at
t statistic: 5.92849809004242

(Factor value) GENOTYPE/wild type genotype
type: EFO_0000001
property type: GENOTYPE
property value: wild type genotype

Arabidopsis thaliana
type: OBI_0100026

KING1
type: EnsemblDatabaseReference

AT1G07040
type: EnsemblDatabaseReference

ATMYBL2 DOWN in 'ptpkis2 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.2099836
p value: 0.0152047003276529
refers to: 259751_at
refers to: ATMYBL2
t statistic: -9.98499527122261

(Sample) ecotype/Col-0
type: EFO_0005148
property type: ecotype
property value: Col-0

ERD5
type: EnsemblDatabaseReference

AT1G13650
type: EnsemblDatabaseReference

AT5G12420
type: EnsemblDatabaseReference

DYL1 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.32462133333334
p value: 0.0386713503253687
refers to: DYL1
refers to: 245668_at
t statistic: 4.96678742236903

AT3G54400
type: EnsemblDatabaseReference

TAT3
type: EnsemblDatabaseReference

AKN2 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.11657513333333
p value: 0.0476089315626077
refers to: 252870_at
refers to: AKN2
t statistic: -4.6150229731989

254862_at
type: EFO_0005072
part of: A-AFFY-2

SWEET17 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.00296183333333
p value: 0.0349781700875637
refers to: SWEET17
refers to: 245524_at
t statistic: -5.25718655787761

(Assay) GSM477893
type: Assay
has participant: A-AFFY-2

263046_at
type: EFO_0005072
part of: A-AFFY-2

262784_at
type: EFO_0005072
part of: A-AFFY-2

Analysis of 'sex1-3 mutation' vs 'wild type'
type: MicroarrayDifferentialExpressionAnalysis

DIN4
type: EnsemblDatabaseReference

ATGSTU20
type: EnsemblDatabaseReference

AT2G33830
type: EnsemblDatabaseReference

GST30 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.4744564
p value: 0.0208134727061777
refers to: 264436_at
refers to: GST30
t statistic: -6.22523115718401

ATCSLA09
type: EnsemblDatabaseReference

ATCSLA09 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.38116556666667
p value: 0.00904928026608426
refers to: 250892_at
refers to: ATCSLA09
t statistic: -8.9639849678745

GLX2-3
type: EnsemblDatabaseReference

AT1G72060
type: EnsemblDatabaseReference

XTH8
type: EnsemblDatabaseReference

ATBCAT-2 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.93778646666667
p value: 0.00429718531945564
refers to: 264524_at
refers to: ATBCAT-2
t statistic: 12.9098826011988

MCCA
type: EnsemblDatabaseReference

AT3G21190 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21196
p value: 0.0432728476990699
refers to: AT3G21190
refers to: 258040_at
t statistic: -4.78980044013941

ATGSTU20 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.6640511
p value: 0.026975255284085
refers to: 260745_at
refers to: ATGSTU20
t statistic: -5.63703498545844

AGP9
type: EnsemblDatabaseReference

AtSIP2
type: EnsemblDatabaseReference

AT2G30600 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.6477768
p value: 0.00904928026608426
refers to: AT2G30600
refers to: 267523_at
t statistic: 9.56616306923302

AKR4C8 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.16580566666667
p value: 0.0351838885748605
refers to: AKR4C8
refers to: 267181_at
t statistic: 5.16352304768669

GA4
type: EnsemblDatabaseReference

252570_at
type: EFO_0005072
part of: A-AFFY-2

AT5G20700
type: EnsemblDatabaseReference

(Sample) organism/Arabidopsis thaliana
type: Arabidopsis thaliana
property type: organism
property value: Arabidopsis thaliana

262682_at
type: EFO_0005072
part of: A-AFFY-2

AT1G04040 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.50832176666667
p value: 0.0465029799176507
refers to: AT1G04040
refers to: 265042_at
t statistic: -4.66101545907776

AT4G33960
type: EnsemblDatabaseReference

QQS
type: EnsemblDatabaseReference

AT4G37180
type: EnsemblDatabaseReference

AKINBETA1
type: EnsemblDatabaseReference

BGAL3
type: EnsemblDatabaseReference

ELP
type: EnsemblDatabaseReference

AT1G05340
type: EnsemblDatabaseReference

261768_at
type: EFO_0005072
part of: A-AFFY-2

IVD
type: EnsemblDatabaseReference

(Assay) GSM477892
type: Assay
has participant: A-AFFY-2

262047_at
type: EFO_0005072
part of: A-AFFY-2

ATBCB UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.71692416666667
p value: 0.0431881093802582
refers to: ATBCB
refers to: 246099_at
t statistic: 4.80751371958116

267461_at
type: EFO_0005072
part of: A-AFFY-2

GRXS11
type: EnsemblDatabaseReference

UGE1 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.496666
p value: 0.0266303328900194
refers to: 261211_at
refers to: UGE1
t statistic: 5.6915050677033

AT2G21220
type: EnsemblDatabaseReference

CYP83A1
type: EnsemblDatabaseReference

AT2G30600
type: EnsemblDatabaseReference

IPMI1
type: EnsemblDatabaseReference

267181_at
type: EFO_0005072
part of: A-AFFY-2

256324_at
type: EFO_0005072
part of: A-AFFY-2

AT1G76590 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.54270193333333
p value: 0.0178590561049727
refers to: 259977_at
refers to: AT1G76590
t statistic: 6.65496326112094

PLP2
type: EnsemblDatabaseReference

AT2G21220 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.894633
p value: 0.0476089315626077
refers to: AT2G21220
refers to: 264016_at
t statistic: -4.56788062293411

254789_at
type: EFO_0005072
part of: A-AFFY-2

AT1G09500
type: EnsemblDatabaseReference

256061_at
type: EFO_0005072
part of: A-AFFY-2

AT1G30820
type: EnsemblDatabaseReference

AT1G66760
type: EnsemblDatabaseReference

258209_at
type: EFO_0005072
part of: A-AFFY-2

STP1
type: EnsemblDatabaseReference

ATBCAT-2
type: EnsemblDatabaseReference

248085_at
type: EFO_0005072
part of: A-AFFY-2

AT1G76590
type: EnsemblDatabaseReference

(Sample) genotype/sex4-3 mutation
type: EFO_0000001
property type: genotype
property value: sex4-3 mutation

CRRSP38
type: EnsemblDatabaseReference

260745_at
type: EFO_0005072
part of: A-AFFY-2

SEX1 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.77194466666667
p value: 0.00954329812408216
refers to: SEX1
refers to: 262784_at
t statistic: -8.44401493083067

ATBCB
type: EnsemblDatabaseReference

255733_at
type: EFO_0005072
part of: A-AFFY-2

AT3G54400 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08586656666667
p value: 0.0150080880712127
refers to: 251899_at
refers to: AT3G54400
t statistic: -6.99408338266876

261395_at
type: EFO_0005072
part of: A-AFFY-2

AT5G44530
type: EnsemblDatabaseReference

(Sample) genotype/sex1-3 mutation
type: EFO_0000001
property type: genotype
property value: sex1-3 mutation

AT3G14060
type: EnsemblDatabaseReference

(Factor value) GENOTYPE/sex4-3 mutation
type: EFO_0000001
property type: GENOTYPE
property value: sex4-3 mutation

B5 #1
type: EnsemblDatabaseReference

ATSDI1
type: EnsemblDatabaseReference

266326_at
type: EFO_0005072
part of: A-AFFY-2

MCCA UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.89553056666667
p value: 0.01837797325371
refers to: MCCA
refers to: 263118_at
t statistic: 6.55440143516639

AT2G20670
type: EnsemblDatabaseReference

265042_at
type: EFO_0005072
part of: A-AFFY-2

PCNA2 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.8206095
p value: 0.0351838885748605
refers to: 266297_at
refers to: PCNA2
t statistic: 5.21612847431579

(Factor value) GENOTYPE/sex1-3 mutation
type: EFO_0000001
property type: GENOTYPE
property value: sex1-3 mutation

SEX1
type: EnsemblDatabaseReference

ATMYBL2
type: EnsemblDatabaseReference

AT3G21190
type: EnsemblDatabaseReference

AKINBETA1 DOWN in 'ptpkis2 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.17511943333333
p value: 0.0238278937009737
refers to: AKINBETA1
refers to: 246028_at
t statistic: -7.48482799567439

(Assay) GSM477888
type: Assay
has participant: A-AFFY-2

DIN4 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.14515923333333
p value: 0.0100593737751923
refers to: 256965_at
refers to: DIN4
t statistic: 8.23691730653399

259640_at
type: EFO_0005072
part of: A-AFFY-2

AT1G79700 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.0225402
p value: 0.00904928026608426
refers to: AT1G79700
refers to: 261395_at
t statistic: 9.07965882467808

ENODL19
type: EnsemblDatabaseReference

IVD UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.00236433333333
p value: 0.015507344508961
refers to: 252570_at
refers to: IVD
t statistic: 6.91105085839972

AT2G20670 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.53367266666667
p value: 0.024520011575689
refers to: 265387_at
refers to: AT2G20670
t statistic: 5.83858674495861

265116_at
type: EFO_0005072
part of: A-AFFY-2

ENODL19 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.95941066666667
p value: 0.0379690576246403
refers to: ENODL19
refers to: 254789_at
t statistic: -5.00931800394133

ALDH7B4
type: EnsemblDatabaseReference

CYP96A4 UP in 'ptpkis2 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.62197393333333
p value: 0.0391071548553516
refers to: 248353_at
refers to: CYP96A4
t statistic: 6.73063263535738

261211_at
type: EFO_0005072
part of: A-AFFY-2

PCNA2
type: EnsemblDatabaseReference

256965_at
type: EFO_0005072
part of: A-AFFY-2

AT1G09500 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.12241446666667
p value: 0.0230408183761979
refers to: 264514_at
refers to: AT1G09500
t statistic: 6.04632953035869

SVL1 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3157413
p value: 0.0328187788910963
refers to: 248085_at
refers to: SVL1
t statistic: -5.357237028648

ATMGL
type: EnsemblDatabaseReference

TBL26
type: EnsemblDatabaseReference

248676_at
type: EFO_0005072
part of: A-AFFY-2

ATPSK4
type: EnsemblDatabaseReference

AT3G15450 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.390024
p value: 0.00631497804542543
refers to: AT3G15450
refers to: 258402_at
t statistic: 11.5515077872058

AT1G80160
type: EnsemblDatabaseReference

AT2G05540
type: EnsemblDatabaseReference

SWEET17
type: EnsemblDatabaseReference

AT4G37180 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.43019596666667
p value: 0.0476089315626077
refers to: AT4G37180
refers to: 246215_at
t statistic: 4.59416135791101

GLX2-3 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.5295715
p value: 0.0250058084333806
refers to: GLX2-3
refers to: 260986_at
t statistic: 5.79736884045141

TBL26 UP in 'ptpkis2 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.3041795
p value: 0.0152047003276529
refers to: 255604_at
refers to: TBL26
t statistic: 10.3871605355013

AT1G72060 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.74611266666667
p value: 0.00904928026608426
refers to: 256337_at
refers to: AT1G72060
t statistic: 9.80258335969603

AT3G15630 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.3896419
p value: 0.0431881093802582
refers to: AT3G15630
refers to: 258225_at
t statistic: 4.80476486632263

CYP96A4
type: EnsemblDatabaseReference

AT4G35320
type: EnsemblDatabaseReference

(Assay) GSM477889
type: Assay
has participant: A-AFFY-2

AT1G07040
type: EnsemblDatabaseReference

267035_at
type: EFO_0005072
part of: A-AFFY-2

ERD5
type: EnsemblDatabaseReference

(Assay) GSM477891
type: Assay
has participant: A-AFFY-2

SVL1
type: EnsemblDatabaseReference

(Sample) developmental stage/Boyes key 3.7
type: EFO_0000001
property type: developmental stage
property value: Boyes key 3.7

TAT3
type: EnsemblDatabaseReference

BAT5
type: EnsemblDatabaseReference

245524_at
type: EFO_0005072
part of: A-AFFY-2

ATRL5 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.41665926666667
p value: 0.010535037891077
refers to: 260664_at
refers to: ATRL5
t statistic: 8.00459036837549

DIN4
type: EnsemblDatabaseReference

BGL1
type: EnsemblDatabaseReference

AT3G54400 UP in 'ptpkis2 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.39418826666667
p value: 0.0238278937009737
refers to: AT3G54400
refers to: 251899_at
t statistic: 7.59631474671626

ATGSTU20
type: EnsemblDatabaseReference

ATMGL UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.65013933333333
p value: 0.0150080880712127
refers to: ATMGL
refers to: 261957_at
t statistic: 6.9893288769733

XTH8 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.7177364
p value: 0.0367387481190751
refers to: XTH8
refers to: 261825_at
t statistic: -5.09347176428524

ATCSLA09
type: EnsemblDatabaseReference

PLP2 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.76080876666667
p value: 0.0344480872618392
refers to: 245038_at
refers to: PLP2
t statistic: 5.28807595086138

GLX2-3
type: EnsemblDatabaseReference

MCCA
type: EnsemblDatabaseReference

(Sample) genotype/ptpkis2 mutation
type: EFO_0000001
property type: genotype
property value: ptpkis2 mutation

252323_at
type: EFO_0005072
part of: A-AFFY-2

(Sample) organism part/leaf
type: EFO_0000993
property type: organism part
property value: leaf

Analysis of 'sex4-3 mutation' vs 'wild type'
type: MicroarrayDifferentialExpressionAnalysis

AT4G33960 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.8292211
p value: 0.0234546226567651
refers to: 253317_at
refers to: AT4G33960
t statistic: -5.93586897479764

258040_at
type: EFO_0005072
part of: A-AFFY-2

AGP9
type: EnsemblDatabaseReference

260831_at
type: EFO_0005072
part of: A-AFFY-2

AtSIP2
type: EnsemblDatabaseReference

258225_at
type: EFO_0005072
part of: A-AFFY-2

ATRL5
type: EnsemblDatabaseReference

255604_at
type: EFO_0005072
part of: A-AFFY-2

AT5G20700
type: EnsemblDatabaseReference

AT1G07040 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.81766416666667
p value: 0.0150080880712127
refers to: AT1G07040
refers to: 256061_at
t statistic: 7.04543518236766

250892_at
type: EFO_0005072
part of: A-AFFY-2

AT1G75900
type: EnsemblDatabaseReference

245038_at
type: EFO_0005072
part of: A-AFFY-2

ASN1
type: EnsemblDatabaseReference

(Factor value) GENOTYPE/ptpkis2 mutation
type: EFO_0000001
property type: GENOTYPE
property value: ptpkis2 mutation

ELP
type: EnsemblDatabaseReference

AT4G30020 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.55482303333333
p value: 0.0178590561049727
refers to: 253650_at
refers to: AT4G30020
t statistic: -6.63544441148156

AT1G05340
type: EnsemblDatabaseReference

CCL
type: EnsemblDatabaseReference

IVD
type: EnsemblDatabaseReference

263118_at
type: EFO_0005072
part of: A-AFFY-2

253650_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) GSM477890
type: Assay
has participant: A-AFFY-2

AKR4C8
type: EnsemblDatabaseReference

260955_at
type: EFO_0005072
part of: A-AFFY-2

STP1 DOWN in 'ptpkis2 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.481223
p value: 0.0230061752764755
refers to: STP1
refers to: 262456_at
t statistic: -8.24258712581655

BGL1 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.31079056666667
p value: 0.0476089315626077
refers to: BGL1
refers to: 259640_at
t statistic: -4.55962649648213

GRXS11
type: EnsemblDatabaseReference

AT2G21220
type: EnsemblDatabaseReference

ATPSK4 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.19051683333334
p value: 0.026975255284085
refers to: 252234_at
refers to: ATPSK4
t statistic: 5.62291594911768

BGAL8 DOWN in 'sex1-3 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.55710166666667
p value: 0.020057089098329
refers to: BGAL8
refers to: 264078_at
t statistic: -6.32029137008524

AT2G30600
type: EnsemblDatabaseReference

264371_at
type: EFO_0005072
part of: A-AFFY-2

264016_at
type: EFO_0005072
part of: A-AFFY-2

254687_at
type: EFO_0005072
part of: A-AFFY-2

UGE1
type: EnsemblDatabaseReference

(Assay) GSM477886
type: Assay
has participant: A-AFFY-2

256337_at
type: EFO_0005072
part of: A-AFFY-2

253090_at
type: EFO_0005072
part of: A-AFFY-2

252415_at
type: EFO_0005072
part of: A-AFFY-2

A-AFFY-2
type: EFO_0000269

AT1G10140
type: EnsemblDatabaseReference

256940_at
type: EFO_0005072
part of: A-AFFY-2

AT1G30820 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.56016596666667
p value: 0.019746078247345
refers to: AT1G30820
refers to: 264529_at
t statistic: 6.39434807199343

CCOAMT
type: EnsemblDatabaseReference

AT1G25400
type: EnsemblDatabaseReference

AT3G15450 DOWN in 'ptpkis2 mutation' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.529165
p value: 0.0127629541278619
refers to: 258402_at
refers to: AT3G15450
t statistic: -12.3934016172315

ASN1 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 5.18498886666667
p value: 0.00406305213039784
refers to: 252415_at
refers to: ASN1
t statistic: 13.9266762120069

266297_at
type: EFO_0005072
part of: A-AFFY-2

AT3G14060 UP in 'sex1-3 mutation' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.48611076666667
p value: 0.01837797325371
refers to: 258209_at
refers to: AT3G14060
t statistic: 6.53771886840258

264524_at
type: EFO_0005072
part of: A-AFFY-2

AT1G66760
type: EnsemblDatabaseReference

GRP3S
type: EnsemblDatabaseReference

AT3G15630
type: EnsemblDatabaseReference

AT4G30020
type: EnsemblDatabaseReference

(Assay) GSM477885
type: Assay
has participant: A-AFFY-2

CRRSP38
type: EnsemblDatabaseReference