ATEXLA1
type: EnsemblDatabaseReference

AT4G01910
type: EnsemblDatabaseReference

SULTR3;1
type: EnsemblDatabaseReference

RPS27AA
type: EnsemblDatabaseReference

AT3G44070
type: EnsemblDatabaseReference

AT1G50040 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.07465885
p value: 0.0458887370329782
refers to: AT1G50040
refers to: 261658_at
t statistic: -3.32123111045424

254247_at
type: EFO_0005072
part of: A-AFFY-2

259685_at
type: EFO_0005072
part of: A-AFFY-2

ATEXPA3
type: EnsemblDatabaseReference

254119_at
type: EFO_0005072
part of: A-AFFY-2

AT2G31730
type: EnsemblDatabaseReference

HSP15.4 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.25799711666667
p value: 0.0453773788546295
refers to: HSP15.4
refers to: 254384_at
t statistic: -3.33973392519404

263598_at
type: EFO_0005072
part of: A-AFFY-2

264261_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) GSM469862
type: Assay
has participant: A-AFFY-2

CYP81D1 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.12019258333334
p value: 3.63414347689715E-4
refers to: 256589_at
refers to: CYP81D1
t statistic: 9.23100122086964

AT3G06070 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.20983445
p value: 0.0382886515520468
refers to: 258468_at
refers to: AT3G06070
t statistic: -3.49823737095588

257912_at
type: EFO_0005072
part of: A-AFFY-2

262186_at
type: EFO_0005072
part of: A-AFFY-2

AT3G20340 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.34353271666667
p value: 0.0497214181959044
refers to: AT3G20340
refers to: 257670_at
t statistic: 3.23400697848017

AT2G16670
type: EnsemblDatabaseReference

LRX3
type: EnsemblDatabaseReference

COW1 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.14363061666667
p value: 4.04454889979135E-4
refers to: 253244_at
refers to: COW1
t statistic: 9.04069408203302

AT1G37160
type: EnsemblDatabaseReference

ATFER1 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.20354888333334
p value: 0.0421285911668349
refers to: ATFER1
refers to: 251109_at
t statistic: 3.41063654480864

AT1G15010
type: EnsemblDatabaseReference

AtGH9C2
type: EnsemblDatabaseReference

264166_at
type: EFO_0005072
part of: A-AFFY-2

AtRLP19 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18017593333333
p value: 0.00504542249493173
refers to: 265917_at
refers to: AtRLP19
t statistic: -5.8266074260164

AT2G39920
type: EnsemblDatabaseReference

AT5G25475
type: EnsemblDatabaseReference

Analysis of 'rts1-1' vs 'wild type'
type: MicroarrayDifferentialExpressionAnalysis

ATRE2 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00046996666667
p value: 0.017364349687503
refers to: ATRE2
refers to: 255463_at
t statistic: 4.38767114923082

ATHB-2 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.03109798333333
p value: 0.0246955253641363
refers to: ATHB-2
refers to: 245276_at
t statistic: 3.98274544206214

246310_at
type: EFO_0005072
part of: A-AFFY-2

AT1G77330
type: EnsemblDatabaseReference

AT3G43530 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0142082
p value: 0.00985269247382398
refers to: 252755_at
refers to: AT3G43530
t statistic: 5.06708604899018

(Assay) GSM469856
type: Assay
has participant: A-AFFY-2

ATEXPB3
type: EnsemblDatabaseReference

ATMRU1
type: EnsemblDatabaseReference

WRKY18
type: EnsemblDatabaseReference

265917_at
type: EFO_0005072
part of: A-AFFY-2

AT1G13750
type: EnsemblDatabaseReference

255822_at
type: EFO_0005072
part of: A-AFFY-2

sks5
type: EnsemblDatabaseReference

AT1G12845
type: EnsemblDatabaseReference

AT3G12710
type: EnsemblDatabaseReference

CAX3
type: EnsemblDatabaseReference

AT4G29370
type: EnsemblDatabaseReference

AT3G43530
type: EnsemblDatabaseReference

AT1G37160 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.87272155
p value: 1.61148673161588E-5
refers to: AT1G37160
refers to: 262031_x_at
t statistic: 13.7050981299663

253224_at
type: EFO_0005072
part of: A-AFFY-2

AT2G19970 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.54152896666667
p value: 0.00685133287116712
refers to: AT2G19970
refers to: 265588_at
t statistic: 5.51985938220281

HSP17.6B UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22275925
p value: 9.37107641221211E-4
refers to: HSP17.6B
refers to: 266294_at
t statistic: 7.93274912096453

AT3G05640
type: EnsemblDatabaseReference

266613_at
type: EFO_0005072
part of: A-AFFY-2

259736_at
type: EFO_0005072
part of: A-AFFY-2

AT4G16000
type: EnsemblDatabaseReference

ATCMPG1 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.42593643333333
p value: 0.0154225876212364
refers to: ATCMPG1
refers to: 256522_at
t statistic: -4.50527590933461

RPL30A UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4730937
p value: 3.64780211275847E-4
refers to: RPL30A
refers to: 256460_at
t statistic: 9.18654878771753

252607_at
type: EFO_0005072
part of: A-AFFY-2

G6PD4
type: EnsemblDatabaseReference

AT2G04770
type: EnsemblDatabaseReference

PAP85
type: EnsemblDatabaseReference

PYL4
type: EnsemblDatabaseReference

COR414-TM1
type: EnsemblDatabaseReference

AtRLP19
type: EnsemblDatabaseReference

262719_at
type: EFO_0005072
part of: A-AFFY-2

HSP17.6B
type: EnsemblDatabaseReference

COW1
type: EnsemblDatabaseReference

FLA9
type: EnsemblDatabaseReference

ATRE2
type: EnsemblDatabaseReference

264514_at
type: EFO_0005072
part of: A-AFFY-2

AT4G28085
type: EnsemblDatabaseReference

ATPS3
type: EnsemblDatabaseReference

252414_at
type: EFO_0005072
part of: A-AFFY-2

262910_at
type: EFO_0005072
part of: A-AFFY-2

ATEXPA11
type: EnsemblDatabaseReference

259502_at
type: EFO_0005072
part of: A-AFFY-2

AT1G11380
type: EnsemblDatabaseReference

RPS27AA UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0736367
p value: 0.00404298882159804
refers to: RPS27AA
refers to: 263016_at
t statistic: 6.08776383131551

AT5G60610
type: EnsemblDatabaseReference

258856_at
type: EFO_0005072
part of: A-AFFY-2

PYL4 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.33078225
p value: 0.0420033866865321
refers to: 267034_at
refers to: PYL4
t statistic: -3.41657516102415

NAS3 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.63717891666667
p value: 0.0324992835738168
refers to: NAS3
refers to: 264261_at
t statistic: 3.6731866822597

FLA9 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.05000163333333
p value: 0.0464409381842235
refers to: FLA9
refers to: 265066_at
t statistic: -3.30907051258705

GASA7 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.26205096666667
p value: 0.028362209917611
refers to: GASA7
refers to: 266613_at
t statistic: -3.8171890933474

ATMES10 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0100105
p value: 0.00245815869901772
refers to: 252168_at
refers to: ATMES10
t statistic: 6.67837936647546

256596_at
type: EFO_0005072
part of: A-AFFY-2

ATEXPA8
type: EnsemblDatabaseReference

RPL30A
type: EnsemblDatabaseReference

SCL7
type: EnsemblDatabaseReference

AT1G72790 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2149158
p value: 0.0260657774792727
refers to: AT1G72790
refers to: 259915_at
t statistic: -3.90292580973277

AT3G06070
type: EnsemblDatabaseReference

250942_at
type: EFO_0005072
part of: A-AFFY-2

AT1G15670 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18934805
p value: 0.0353368712394696
refers to: 259502_at
refers to: AT1G15670
t statistic: -3.57750244120251

253707_at
type: EFO_0005072
part of: A-AFFY-2

256299_at
type: EFO_0005072
part of: A-AFFY-2

AT1G62510 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0559575
p value: 8.80850780259992E-4
refers to: 265111_at
refers to: AT1G62510
t statistic: -8.02999247483506

AT1G15670
type: EnsemblDatabaseReference

GASA7
type: EnsemblDatabaseReference

260427_at
type: EFO_0005072
part of: A-AFFY-2

252563_at
type: EFO_0005072
part of: A-AFFY-2

251192_at
type: EFO_0005072
part of: A-AFFY-2

BETA-OHASE 1
type: EnsemblDatabaseReference

BXL2
type: EnsemblDatabaseReference

AT3G23750 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06935308333333
p value: 0.033750419762234
refers to: AT3G23750
refers to: 257202_at
t statistic: -3.62400956459466

AT3G23750
type: EnsemblDatabaseReference

(Assay) GSM469860
type: Assay
has participant: A-AFFY-2

AT2G38010 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0740501
p value: 0.0112431322765654
refers to: AT2G38010
refers to: 266089_at
t statistic: 4.85103695993268

AT3G14560 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.26763183333333
p value: 0.0426513325600259
refers to: AT3G14560
refers to: 258091_at
t statistic: 3.39626603509533

SAL3 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22801853333333
p value: 0.00169306898272509
refers to: SAL3
refers to: 247318_at
t statistic: 7.15719227860959

AT1G77960 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.392573
p value: 0.00118446970225469
refers to: AT1G77960
refers to: 262186_at
t statistic: 7.63778076789461

HSP15.4
type: EnsemblDatabaseReference

AT5G45570
type: EnsemblDatabaseReference

ATACP5
type: EnsemblDatabaseReference

251109_at
type: EFO_0005072
part of: A-AFFY-2

AT2G44500
type: EnsemblDatabaseReference

AT2G16670 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.28105511666667
p value: 9.26068784217886E-5
refers to: AT2G16670
refers to: 265380_at
t statistic: 11.1114040385053

AtPP2-A11
type: EnsemblDatabaseReference

254020_at
type: EFO_0005072
part of: A-AFFY-2

AT3G27960
type: EnsemblDatabaseReference

RSU1
type: EnsemblDatabaseReference

XTR8
type: EnsemblDatabaseReference

SRG3
type: EnsemblDatabaseReference

263016_at
type: EFO_0005072
part of: A-AFFY-2

COR15A
type: EnsemblDatabaseReference

AT1G59710
type: EnsemblDatabaseReference

AT1G67330
type: EnsemblDatabaseReference

LTI30
type: EnsemblDatabaseReference

AT2G19970
type: EnsemblDatabaseReference

AtMYB47
type: EnsemblDatabaseReference

LTI30 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.19724306666667
p value: 0.0231662829825831
refers to: 252102_at
refers to: LTI30
t statistic: 4.05133267196775

266693_at
type: EFO_0005072
part of: A-AFFY-2

AT3G54070 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.03585883333333
p value: 0.00458386980540356
refers to: AT3G54070
refers to: 251934_at
t statistic: 5.94614343300581

COR414-TM1 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.40611535
p value: 0.00399400177058798
refers to: COR414-TM1
refers to: 259789_at
t statistic: 6.12798904222035

252234_at
type: EFO_0005072
part of: A-AFFY-2

AT2G15555
type: EnsemblDatabaseReference

AT1G65370
type: EnsemblDatabaseReference

TIFY10A
type: EnsemblDatabaseReference

ATXT1
type: EnsemblDatabaseReference

SIB1
type: EnsemblDatabaseReference

NHL12 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02399763333333
p value: 0.00163401446907348
refers to: 263951_at
refers to: NHL12
t statistic: 7.2053522700017

ATCMPG1
type: EnsemblDatabaseReference

XTH33
type: EnsemblDatabaseReference

AT2G26630
type: EnsemblDatabaseReference

EIF-5A
type: EnsemblDatabaseReference

(Assay) GSM469857
type: Assay
has participant: A-AFFY-2

E-GEOD-18988
type: microarray 1colour mrna differential
RO_0002162: Arabidopsis thaliana
description: In addition to the canonical RNAi pathways that targets mRNAs in the cytoplasm, several RNA-dependent pathways operate in the nucleus to induce sequence-specific epigenetic modifications. One specialized type of RNAi-mediated pathway is RNA-directed DNA methylation (RdDM). During RdDM, nuclear DNA with sequence identity to the trigger dsRNA is de novo methylated at almost all cytosine residues, providing a mark for the formation of transcriptionally silent heterochromatin. Genetic forward screens identified the RPD3-like histone deacetylase HDA6 as the enzyme responsible for the histone deacetylation step of RdDM and suggest that HDA6 might have acquired specific functions for RNA-directed transcriptional silencing processes [Aufsatz et al., 2002a; Aufsatz et al., 2002b]. Complete loss-of-function mutants for AtHDA6 (rts1-1; RNA-mediated transcriptional gene silencing) exhibit reactivation of RdDM-silenced promoters, despite the continuous presence of the silencing-inducing RNA signal. One of the found mutant alleles, rts1-5, has an amino acid substitution located at a conserved position within the HDAC domain (Naumann et al., manuscript in preparation). This mutant is characterized by strong reactivation of an RdDM-silenced target promoter, despite maintaining wild-type levels of cytosine methylation. An evaluation of the transcription pattern among the mutants with opposite methylation phenotype and wild-type plants should show which genes are differentially regulated between the mutants in comparison to wild-type plants. Keywords: Expression profiling by array 9 samples were used in this experiment
uses data from: pubmed

AT4G29200 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.49685105
p value: 0.0017388716891634
refers to: AT4G29200
refers to: 253707_at
t statistic: 7.12596038389329

262031_x_at
type: EFO_0005072
part of: A-AFFY-2

DREB26
type: EnsemblDatabaseReference

AT3G50560
type: EnsemblDatabaseReference

AT1G62510
type: EnsemblDatabaseReference

AT3G28310
type: EnsemblDatabaseReference

AT1G73480 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.18432505
p value: 0.0249379336569612
refers to: AT1G73480
refers to: 245734_at
t statistic: 3.95731834534995

263495_at
type: EFO_0005072
part of: A-AFFY-2

PAP8
type: EnsemblDatabaseReference

AT1G21590
type: EnsemblDatabaseReference

AT1G72790
type: EnsemblDatabaseReference

AT1G77330 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.14198063333334
p value: 8.56542076488635E-4
refers to: AT1G77330
refers to: 246390_at
t statistic: 8.08440795601475

ATEXPA1 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.7421565
p value: 0.0109388740092249
refers to: ATEXPA1
refers to: 256299_at
t statistic: 4.9044111717901

AT4G16563 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.98804323333333
p value: 0.00560634321210416
refers to: AT4G16563
refers to: 245262_at
t statistic: -5.70069095015211

252173_at
type: EFO_0005072
part of: A-AFFY-2

QQS
type: EnsemblDatabaseReference

AT4G29190
type: EnsemblDatabaseReference

RALFL22
type: EnsemblDatabaseReference

266294_at
type: EFO_0005072
part of: A-AFFY-2

256100_at
type: EFO_0005072
part of: A-AFFY-2

AFH1
type: EnsemblDatabaseReference

BXL2 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03133103333334
p value: 0.0325178685856124
refers to: BXL2
refers to: 260914_at
t statistic: -3.66837951809088

AT5G39410
type: EnsemblDatabaseReference

AT1G11380 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2750116
p value: 0.0237489298308788
refers to: AT1G11380
refers to: 261822_at
t statistic: -4.02451779401762

NAS3
type: EnsemblDatabaseReference

254396_at
type: EFO_0005072
part of: A-AFFY-2

267158_at
type: EFO_0005072
part of: A-AFFY-2

AT3G60320
type: EnsemblDatabaseReference

M17
type: EnsemblDatabaseReference

245816_at
type: EFO_0005072
part of: A-AFFY-2

AT4G30650 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00394491666667
p value: 0.00954630122069653
refers to: AT4G30650
refers to: 253627_at
t statistic: 5.11616222486823

ATEXPA1
type: EnsemblDatabaseReference

AT1G52000 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.79815091666667
p value: 0.0426513325600259
refers to: AT1G52000
refers to: 265053_at
t statistic: 3.39322665302819

262236_at
type: EFO_0005072
part of: A-AFFY-2

AT4G01910
type: EnsemblDatabaseReference

APA2 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.01779791666667
p value: 0.00625052839617681
refers to: APA2
refers to: 264741_at
t statistic: 5.60746344424934

ATSOFL1
type: EnsemblDatabaseReference

IP5PII DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14209071666667
p value: 0.00519593143085046
refers to: IP5PII
refers to: 254707_at
t statistic: -5.78406244879714

RPS27AA
type: EnsemblDatabaseReference

264513_at
type: EFO_0005072
part of: A-AFFY-2

AT1G15010 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.62602673333334
p value: 5.12624976032945E-4
refers to: 260744_at
refers to: AT1G15010
t statistic: 8.71161667553626

245449_at
type: EFO_0005072
part of: A-AFFY-2

253627_at
type: EFO_0005072
part of: A-AFFY-2

AT1G67330 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17351785
p value: 0.0208794576659259
refers to: 264998_at
refers to: AT1G67330
t statistic: 4.17202827581853

TIFY10A UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.33527813333334
p value: 0.00987523917276138
refers to: 256017_at
refers to: TIFY10A
t statistic: 5.0617869953965

AT4G24780 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.07422795
p value: 0.0228776134881411
refers to: AT4G24780
refers to: 254119_at
t statistic: 4.06491738710174

ATEXPA3
type: EnsemblDatabaseReference

ATPSK4 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02117513333333
p value: 0.00824584684148933
refers to: 252234_at
refers to: ATPSK4
t statistic: -5.27447486928155

255463_at
type: EFO_0005072
part of: A-AFFY-2

AT2G31730
type: EnsemblDatabaseReference

ATMYB3
type: EnsemblDatabaseReference

SAL3
type: EnsemblDatabaseReference

251413_at
type: EFO_0005072
part of: A-AFFY-2

AT4G09420
type: EnsemblDatabaseReference

258158_at
type: EFO_0005072
part of: A-AFFY-2

258901_at
type: EFO_0005072
part of: A-AFFY-2

ATEXPB3 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.26096723333333
p value: 0.00420156735568641
refers to: 253815_at
refers to: ATEXPB3
t statistic: 6.04412806250261

ATXT1 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3959226
p value: 0.0446989177128324
refers to: ATXT1
refers to: 251192_at
t statistic: -3.35192670063904

LRX3
type: EnsemblDatabaseReference

ATMES10
type: EnsemblDatabaseReference

AT3G50560 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14299983333333
p value: 0.00918503748652084
refers to: AT3G50560
refers to: 252167_at
t statistic: -5.14992790095682

AT5G03350 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.07338223333333
p value: 4.99187326083294E-5
refers to: 250942_at
refers to: AT5G03350
t statistic: 12.03530523893

247318_at
type: EFO_0005072
part of: A-AFFY-2

AT2G15510
type: EnsemblDatabaseReference

ATFER1
type: EnsemblDatabaseReference

AT4G16870
type: EnsemblDatabaseReference

AT2G39920
type: EnsemblDatabaseReference

261059_at
type: EFO_0005072
part of: A-AFFY-2

LRX3 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.92677806666667
p value: 0.0462093750843326
refers to: LRX3
refers to: 254770_at
t statistic: -3.31394514541308

AT4G01910 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22448528333333
p value: 0.00206154682031982
refers to: AT4G01910
refers to: 255546_at
t statistic: 6.96929816130863

AT1G09500
type: EnsemblDatabaseReference

ATACP5 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.57772805
p value: 0.00872190152568911
refers to: 258158_at
refers to: ATACP5
t statistic: 5.19077515979955

AT1G59710 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.49533336666667
p value: 0.0337501059450249
refers to: 262910_at
refers to: AT1G59710
t statistic: -3.62600063274559

PAP8 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1774715
p value: 0.00206154682031982
refers to: PAP8
refers to: 263595_at
t statistic: 6.95911774766126

AT4G16870 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.46111175
p value: 3.52602804888072E-6
refers to: AT4G16870
refers to: 245449_at
t statistic: -16.5092906100263

AT1G77330
type: EnsemblDatabaseReference

253925_at
type: EFO_0005072
part of: A-AFFY-2

GRXC11
type: EnsemblDatabaseReference

ATEXPB3
type: EnsemblDatabaseReference

264741_at
type: EFO_0005072
part of: A-AFFY-2

AT1G13750 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.06323541666667
p value: 0.00791936890625941
refers to: AT1G13750
refers to: 256100_at
t statistic: 5.3455373976985

255546_at
type: EFO_0005072
part of: A-AFFY-2

266089_at
type: EFO_0005072
part of: A-AFFY-2

249059_at
type: EFO_0005072
part of: A-AFFY-2

256522_at
type: EFO_0005072
part of: A-AFFY-2

NRT1.8
type: EnsemblDatabaseReference

SHV3
type: EnsemblDatabaseReference

AT3G28540
type: EnsemblDatabaseReference

WRKY18
type: EnsemblDatabaseReference

AT2G38010
type: EnsemblDatabaseReference

sks5
type: EnsemblDatabaseReference

ALDH2B7 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.04700088333333
p value: 6.12972882729595E-4
refers to: ALDH2B7
refers to: 265188_at
t statistic: 8.48861395232968

AT5G44530
type: EnsemblDatabaseReference

NAP
type: EnsemblDatabaseReference

ERF023
type: EnsemblDatabaseReference

XTR6
type: EnsemblDatabaseReference

AT3G43530
type: EnsemblDatabaseReference

265053_at
type: EFO_0005072
part of: A-AFFY-2

IP5PII
type: EnsemblDatabaseReference

AtMYB47 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.5919839
p value: 0.0320626673902188
refers to: AtMYB47
refers to: 261431_at
t statistic: 3.69018856265472

264210_at
type: EFO_0005072
part of: A-AFFY-2

261728_at
type: EFO_0005072
part of: A-AFFY-2

(Sample) genotype/wild type genotype
type: EFO_0000001
property type: genotype
property value: wild type genotype

AT4G16000
type: EnsemblDatabaseReference

246390_at
type: EFO_0005072
part of: A-AFFY-2

AT1G22550
type: EnsemblDatabaseReference

AT2G04460
type: EnsemblDatabaseReference

G6PD4
type: EnsemblDatabaseReference

AT2G25510 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.06607166666667
p value: 0.0466685101529005
refers to: AT2G25510
refers to: 265611_at
t statistic: 3.30298103928532

PYL4
type: EnsemblDatabaseReference

AT1G43590 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.21998425
p value: 1.29603731571103E-6
refers to: AT1G43590
refers to: 262719_at
t statistic: 18.6293304240086

260856_at
type: EFO_0005072
part of: A-AFFY-2

AtRLP19
type: EnsemblDatabaseReference

COW1
type: EnsemblDatabaseReference

254770_at
type: EFO_0005072
part of: A-AFFY-2

NHL12
type: EnsemblDatabaseReference

ATEXPA3 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1110991
p value: 0.0233086275155089
refers to: ATEXPA3
refers to: 267158_at
t statistic: 4.0461334033329

AT4G30650
type: EnsemblDatabaseReference

TMAC2 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04098158333333
p value: 0.0109503292104323
refers to: TMAC2
refers to: 259076_at
t statistic: -4.89278751206662

CAX3 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.12674506666667
p value: 0.00488555650053085
refers to: CAX3
refers to: 246302_at
t statistic: -5.88103386333962

ATRE2
type: EnsemblDatabaseReference

ATEXPA11
type: EnsemblDatabaseReference

ATPS3
type: EnsemblDatabaseReference

ATHB-2
type: EnsemblDatabaseReference

IBM1
type: EnsemblDatabaseReference

(Factor value) GENOTYPE/wild type genotype
type: EFO_0000001
property type: GENOTYPE
property value: wild type genotype

265503_at
type: EFO_0005072
part of: A-AFFY-2

256848_at
type: EFO_0005072
part of: A-AFFY-2

AT3G20340
type: EnsemblDatabaseReference

253815_at
type: EFO_0005072
part of: A-AFFY-2

AT2G15510 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.35612523333333
p value: 2.40353745791166E-5
refers to: AT2G15510
refers to: 265503_at
t statistic: 13.093466459263

AT3G52500
type: EnsemblDatabaseReference

ATEXPA8
type: EnsemblDatabaseReference

(Sample) ecotype/Col-0
type: EFO_0005148
property type: ecotype
property value: Col-0

RPL30A
type: EnsemblDatabaseReference

AtPP2-A11 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.20311115
p value: 0.0136267659958632
refers to: AtPP2-A11
refers to: 259685_at
t statistic: -4.62057123462759

WRKY18 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.02124141666667
p value: 9.0761725932791E-4
refers to: WRKY18
refers to: 253485_at
t statistic: -7.98229428554378

SCL7
type: EnsemblDatabaseReference

AT3G06070
type: EnsemblDatabaseReference

AT3G60170
type: EnsemblDatabaseReference

TMAC2
type: EnsemblDatabaseReference

AT1G15670
type: EnsemblDatabaseReference

265066_at
type: EFO_0005072
part of: A-AFFY-2

AT4G16000 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.80566855
p value: 0.00206965928902136
refers to: 245353_at
refers to: AT4G16000
t statistic: 6.89848950049321

GASA7
type: EnsemblDatabaseReference

258091_at
type: EFO_0005072
part of: A-AFFY-2

ATPSK4
type: EnsemblDatabaseReference

BETA-OHASE 1
type: EnsemblDatabaseReference

252663_at
type: EFO_0005072
part of: A-AFFY-2

259252_at
type: EFO_0005072
part of: A-AFFY-2

AT1G48330 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.20176065
p value: 0.0340449031065381
refers to: 262236_at
refers to: AT1G48330
t statistic: 3.61287472444355

ATACP5
type: EnsemblDatabaseReference

Arabidopsis thaliana
type: OBI_0100026

AT2G44500
type: EnsemblDatabaseReference

246906_at
type: EFO_0005072
part of: A-AFFY-2

AtPP2-A11
type: EnsemblDatabaseReference

263367_at
type: EFO_0005072
part of: A-AFFY-2

253713_at
type: EFO_0005072
part of: A-AFFY-2

AT1G77960
type: EnsemblDatabaseReference

AT3G27960
type: EnsemblDatabaseReference

XTR8
type: EnsemblDatabaseReference

SHV3 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07786473333333
p value: 0.0249379336569612
refers to: SHV3
refers to: 253925_at
t statistic: -3.94985310893723

AT4G16563
type: EnsemblDatabaseReference

267393_at
type: EFO_0005072
part of: A-AFFY-2

254305_at
type: EFO_0005072
part of: A-AFFY-2

AT2G25510
type: EnsemblDatabaseReference

COR15A
type: EnsemblDatabaseReference

AT1G59710
type: EnsemblDatabaseReference

264998_at
type: EFO_0005072
part of: A-AFFY-2

AT1G67330
type: EnsemblDatabaseReference

LTI30
type: EnsemblDatabaseReference

AT4G34860
type: EnsemblDatabaseReference

AtMYB47
type: EnsemblDatabaseReference

261924_at
type: EFO_0005072
part of: A-AFFY-2

APA2
type: EnsemblDatabaseReference

ATSOFL1 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.11671556666666
p value: 0.0420332197055535
refers to: ATSOFL1
refers to: 245816_at
t statistic: -3.41421478045152

(Sample) organism/Arabidopsis thaliana
type: Arabidopsis thaliana
property type: organism
property value: Arabidopsis thaliana

AT1G65370
type: EnsemblDatabaseReference

TIFY10A
type: EnsemblDatabaseReference

ATXT1
type: EnsemblDatabaseReference

CRK18 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.13118368333333
p value: 8.77536183066239E-4
refers to: CRK18
refers to: 254247_at
t statistic: -8.04781912077109

CYP81D1
type: EnsemblDatabaseReference

ATCMPG1
type: EnsemblDatabaseReference

253722_at
type: EFO_0005072
part of: A-AFFY-2

SIB1
type: EnsemblDatabaseReference

COR15B
type: EnsemblDatabaseReference

AT2G04770 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 5.18199096666667
p value: 9.40309367751292E-5
refers to: 263675_x_at
refers to: AT2G04770
t statistic: 11.0551963628126

254042_at
type: EFO_0005072
part of: A-AFFY-2

AT1G52000
type: EnsemblDatabaseReference

263207_at
type: EFO_0005072
part of: A-AFFY-2

AT1G72430
type: EnsemblDatabaseReference

PAP8
type: EnsemblDatabaseReference

DREB26
type: EnsemblDatabaseReference

(Sample) genotype/rts1-1
type: EFO_0000001
property type: genotype
property value: rts1-1

PAP85 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.05133411666667
p value: 0.0178845131915083
refers to: PAP85
refers to: 258327_at
t statistic: 4.33990106452496

267361_at
type: EFO_0005072
part of: A-AFFY-2

AT3G50560
type: EnsemblDatabaseReference

263595_at
type: EFO_0005072
part of: A-AFFY-2

AT3G54070
type: EnsemblDatabaseReference

246293_at
type: EFO_0005072
part of: A-AFFY-2

AT3G28310
type: EnsemblDatabaseReference

263851_at
type: EFO_0005072
part of: A-AFFY-2

AT1G21590
type: EnsemblDatabaseReference

AT1G65370 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0573425
p value: 0.00270136078111436
refers to: 264166_at
refers to: AT1G65370
t statistic: 6.5308168712804

AT1G48330
type: EnsemblDatabaseReference

RSU1 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.23037803333333
p value: 0.00287603802299299
refers to: RSU1
refers to: 252347_at
t statistic: 6.46625931057567

AT1G72790
type: EnsemblDatabaseReference

AT1G21590 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.12776741666667
p value: 0.00868750082325021
refers to: AT1G21590
refers to: 260924_at
t statistic: 5.20205070762888

AT1G50040
type: EnsemblDatabaseReference

263467_at
type: EFO_0005072
part of: A-AFFY-2

AT4G29200
type: EnsemblDatabaseReference

RALFL22 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.55003433333333
p value: 0.0427062452377614
refers to: RALFL22
refers to: 259106_at
t statistic: -3.3901355575141

AT2G31730 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.31835886666667
p value: 0.00368726686148774
refers to: AT2G31730
refers to: 263467_at
t statistic: -6.21518244166944

252755_at
type: EFO_0005072
part of: A-AFFY-2

261822_at
type: EFO_0005072
part of: A-AFFY-2

258327_at
type: EFO_0005072
part of: A-AFFY-2

PHO1-H8
type: EnsemblDatabaseReference

(Assay) GSM469859
type: Assay
has participant: A-AFFY-2

(Factor value) GENOTYPE/rts1-1
type: EFO_0000001
property type: GENOTYPE
property value: rts1-1

AT5G03350
type: EnsemblDatabaseReference

QQS
type: EnsemblDatabaseReference

SRG3 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.21282095
p value: 0.0108586580517146
refers to: SRG3
refers to: 258856_at
t statistic: 4.92066346347465

257670_at
type: EFO_0005072
part of: A-AFFY-2

AFH1
type: EnsemblDatabaseReference

259546_at
type: EFO_0005072
part of: A-AFFY-2

AT3G14560
type: EnsemblDatabaseReference

AT4G29370 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.64607383333333
p value: 0.0294058787150454
refers to: AT4G29370
refers to: 253713_at
t statistic: 3.78349517611957

EXGT-A3
type: EnsemblDatabaseReference

263320_at
type: EFO_0005072
part of: A-AFFY-2

AKT2/3
type: EnsemblDatabaseReference

252347_at
type: EFO_0005072
part of: A-AFFY-2

251458_at
type: EFO_0005072
part of: A-AFFY-2

NAS3
type: EnsemblDatabaseReference

259789_at
type: EFO_0005072
part of: A-AFFY-2

AT1G43590
type: EnsemblDatabaseReference

BETA-OHASE 1 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01647008333333
p value: 0.00601796149975708
refers to: BETA-OHASE 1
refers to: 254020_at
t statistic: -5.6383162552182

AT3G60320
type: EnsemblDatabaseReference

256460_at
type: EFO_0005072
part of: A-AFFY-2

GRXC11 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.46727938333333
p value: 0.0249379336569612
refers to: GRXC11
refers to: 251196_at
t statistic: 3.95072962323814

248949_at
type: EFO_0005072
part of: A-AFFY-2

AT2G20460
type: EnsemblDatabaseReference

263675_x_at
type: EFO_0005072
part of: A-AFFY-2

249727_at
type: EFO_0005072
part of: A-AFFY-2

ATMYB3
type: EnsemblDatabaseReference

SAL3
type: EnsemblDatabaseReference

M17 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.78791446666667
p value: 1.27814597870837E-4
refers to: M17
refers to: 266393_at
t statistic: 10.5974141233275

AT5G25475 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.194258
p value: 0.00287877546779703
refers to: 246906_at
refers to: AT5G25475
t statistic: 6.45660494409086

ALDH2B7
type: EnsemblDatabaseReference

XTR8 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.10041218333334
p value: 0.0456117127901704
refers to: XTR8
refers to: 252607_at
t statistic: 3.33145629222033

CRK18
type: EnsemblDatabaseReference

AT4G09420
type: EnsemblDatabaseReference

265588_at
type: EFO_0005072
part of: A-AFFY-2

(Sample) organism part/whole organism
type: EFO_0002906
property type: organism part
property value: whole organism

AtGolS1
type: EnsemblDatabaseReference

ATMES10
type: EnsemblDatabaseReference

AT2G15510
type: EnsemblDatabaseReference

AT3G60170 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4203725
p value: 0.00300545357553238
refers to: AT3G60170
refers to: 251458_at
t statistic: 6.41007626058772

259106_at
type: EFO_0005072
part of: A-AFFY-2

256300_at
type: EFO_0005072
part of: A-AFFY-2

ATFER1
type: EnsemblDatabaseReference

AT4G16870
type: EnsemblDatabaseReference

265111_at
type: EFO_0005072
part of: A-AFFY-2

AT4G24780
type: EnsemblDatabaseReference

AT1G09500
type: EnsemblDatabaseReference

IBM1 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21635323333333
p value: 9.42014342151454E-4
refers to: IBM1
refers to: 259252_at
t statistic: -7.91467723045811

261658_at
type: EFO_0005072
part of: A-AFFY-2

AT3G60320 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08855605
p value: 0.0393670928251271
refers to: AT3G60320
refers to: 251413_at
t statistic: -3.47082059317545

245262_at
type: EFO_0005072
part of: A-AFFY-2

249456_at
type: EFO_0005072
part of: A-AFFY-2

251934_at
type: EFO_0005072
part of: A-AFFY-2

MIOX2
type: EnsemblDatabaseReference

GRXC11
type: EnsemblDatabaseReference

ERF023 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.11152398333333
p value: 0.0307730016464252
refers to: ERF023
refers to: 261059_at
t statistic: 3.7328342303323

AT1G73480
type: EnsemblDatabaseReference

EXGT-A1
type: EnsemblDatabaseReference

ATEXLA1
type: EnsemblDatabaseReference

NRT1.8
type: EnsemblDatabaseReference

SHV3
type: EnsemblDatabaseReference

SULTR3;1
type: EnsemblDatabaseReference

251196_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) GSM469855
type: Assay
has participant: A-AFFY-2

253827_at
type: EFO_0005072
part of: A-AFFY-2

AT3G28540
type: EnsemblDatabaseReference

DREB26 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3367146
p value: 0.0458887370329782
refers to: 260856_at
refers to: DREB26
t statistic: -3.32118978770797

AT3G44070
type: EnsemblDatabaseReference

AT2G38010
type: EnsemblDatabaseReference

(Assay) GSM469858
type: Assay
has participant: A-AFFY-2

AT5G44530
type: EnsemblDatabaseReference

NAP
type: EnsemblDatabaseReference

261226_at
type: EFO_0005072
part of: A-AFFY-2

ERF023
type: EnsemblDatabaseReference

XTR6
type: EnsemblDatabaseReference

G6PD4 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22168695
p value: 7.01692617514484E-5
refers to: G6PD4
refers to: 264513_at
t statistic: 11.5240185666638

IP5PII
type: EnsemblDatabaseReference

AKT2/3 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.27234073333333
p value: 0.0108586580517146
refers to: 254305_at
refers to: AKT2/3
t statistic: 4.92518949711549

265380_at
type: EFO_0005072
part of: A-AFFY-2

ATMYB3 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.23270513333333
p value: 0.0364960374096408
refers to: ATMYB3
refers to: 264210_at
t statistic: 3.55017412098003

AT2G16670
type: EnsemblDatabaseReference

AT1G22550
type: EnsemblDatabaseReference

AT2G04460
type: EnsemblDatabaseReference

AT1G37160
type: EnsemblDatabaseReference

265611_at
type: EFO_0005072
part of: A-AFFY-2

ATEXLA1 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.24634476666667
p value: 0.0391060673935118
refers to: ATEXLA1
refers to: 252563_at
t statistic: -3.4791248825373

AT1G15010
type: EnsemblDatabaseReference

AtGH9C2
type: EnsemblDatabaseReference

NHL12
type: EnsemblDatabaseReference

AT4G30650
type: EnsemblDatabaseReference

SCL7 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0298597
p value: 0.00300545357553238
refers to: SCL7
refers to: 252173_at
t statistic: -6.40537979707209

AT5G25475
type: EnsemblDatabaseReference

256589_at
type: EFO_0005072
part of: A-AFFY-2

252168_at
type: EFO_0005072
part of: A-AFFY-2

ATHB-2
type: EnsemblDatabaseReference

IBM1
type: EnsemblDatabaseReference

AT3G20340
type: EnsemblDatabaseReference

sks5 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10835463333333
p value: 0.0178845131915083
refers to: sks5
refers to: 261728_at
t statistic: -4.34056261684077

ATMRU1
type: EnsemblDatabaseReference

266393_at
type: EFO_0005072
part of: A-AFFY-2

QQS UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 5.46953943333333
p value: 1.22978545239314E-7
refers to: QQS
refers to: 256940_at
t statistic: 25.2753440829631

AT3G60170
type: EnsemblDatabaseReference

AT1G13750
type: EnsemblDatabaseReference

TMAC2
type: EnsemblDatabaseReference

COR15B UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.50035466666667
p value: 0.00678170605783617
refers to: COR15B
refers to: 263495_at
t statistic: 5.53172701250114

NRT1.8 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03452643333333
p value: 0.0165954294677186
refers to: NRT1.8
refers to: 254396_at
t statistic: -4.42635955290746

AT1G12845
type: EnsemblDatabaseReference

262615_at
type: EFO_0005072
part of: A-AFFY-2

260924_at
type: EFO_0005072
part of: A-AFFY-2

AT3G12710
type: EnsemblDatabaseReference

ATPSK4
type: EnsemblDatabaseReference

CAX3
type: EnsemblDatabaseReference

AT3G28540 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.06688886666667
p value: 0.00233980895113411
refers to: AT3G28540
refers to: 256596_at
t statistic: 6.75377523820794

SIB1 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.71854595
p value: 0.00837842562455778
refers to: 246293_at
refers to: SIB1
t statistic: 5.24733446965725

AT4G29370
type: EnsemblDatabaseReference

261203_at
type: EFO_0005072
part of: A-AFFY-2

256017_at
type: EFO_0005072
part of: A-AFFY-2

AT3G05640
type: EnsemblDatabaseReference

AT1G12845 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.04574731666667
p value: 0.0109503292104323
refers to: 261203_at
refers to: AT1G12845
t statistic: 4.89279362861033

254384_at
type: EFO_0005072
part of: A-AFFY-2

AT2G04770
type: EnsemblDatabaseReference

245276_at
type: EFO_0005072
part of: A-AFFY-2

AT1G77960
type: EnsemblDatabaseReference

PAP85
type: EnsemblDatabaseReference

COR414-TM1
type: EnsemblDatabaseReference

AT3G27960 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.34928185
p value: 0.033750419762234
refers to: AT3G27960
refers to: 256848_at
t statistic: -3.62372548584081

SULTR3;1 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09460415
p value: 4.31373210471307E-4
refers to: SULTR3;1
refers to: 246310_at
t statistic: -8.9393375047279

HSP17.6B
type: EnsemblDatabaseReference

247640_at
type: EFO_0005072
part of: A-AFFY-2

245734_at
type: EFO_0005072
part of: A-AFFY-2

253244_at
type: EFO_0005072
part of: A-AFFY-2

AT5G45570 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 4.02403301666667
p value: 1.94283370406959E-8
refers to: 248949_at
refers to: AT5G45570
t statistic: 31.3881367314251

AT4G16563
type: EnsemblDatabaseReference

FLA9
type: EnsemblDatabaseReference

AT4G28085
type: EnsemblDatabaseReference

AT2G26630 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.07032056666667
p value: 3.52602804888072E-6
refers to: AT2G26630
refers to: 245032_at
t statistic: 16.5227464340627

AT4G34860
type: EnsemblDatabaseReference

ATEXPA8 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4823885
p value: 0.00238781277824064
refers to: 255822_at
refers to: ATEXPA8
t statistic: 6.73021761778318

MIOX2 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.0508154
p value: 0.0112239614979239
refers to: MIOX2
refers to: 266693_at
t statistic: -4.86133685182085

AT1G11380
type: EnsemblDatabaseReference

APA2
type: EnsemblDatabaseReference

AT2G20460 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.39742735
p value: 0.0149667564846592
refers to: AT2G20460
refers to: 263367_at
t statistic: 4.52894214120511

AT5G60610
type: EnsemblDatabaseReference

259076_at
type: EFO_0005072
part of: A-AFFY-2

246302_at
type: EFO_0005072
part of: A-AFFY-2

CYP81D1
type: EnsemblDatabaseReference

COR15B
type: EnsemblDatabaseReference

AT1G09500 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.6027188
p value: 0.0013709782090168
refers to: AT1G09500
refers to: 264514_at
t statistic: -7.42278994720857

AT1G52000
type: EnsemblDatabaseReference

AT1G72430
type: EnsemblDatabaseReference

261431_at
type: EFO_0005072
part of: A-AFFY-2

ATSOFL1
type: EnsemblDatabaseReference

AT5G39410 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.01032698333333
p value: 0.0370995824552058
refers to: AT5G39410
refers to: 249456_at
t statistic: 3.5350020020267

AT2G44500 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.66522916666667
p value: 0.0380994244650919
refers to: AT2G44500
refers to: 267393_at
t statistic: -3.5048946786818

BXL2
type: EnsemblDatabaseReference

AT3G54070
type: EnsemblDatabaseReference

ATEXPA11 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.07796226666667
p value: 0.00504542249493173
refers to: 261226_at
refers to: ATEXPA11
t statistic: 5.82823422662266

AT3G23750
type: EnsemblDatabaseReference

(Assay) GSM469854
type: Assay
has participant: A-AFFY-2

AT1G48330
type: EnsemblDatabaseReference

255059_at
type: EFO_0005072
part of: A-AFFY-2

XTH33 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.61741063333333
p value: 0.0114961283716016
refers to: 263207_at
refers to: XTH33
t statistic: -4.82547648920956

260744_at
type: EFO_0005072
part of: A-AFFY-2

263951_at
type: EFO_0005072
part of: A-AFFY-2

HSP15.4
type: EnsemblDatabaseReference

AT1G50040
type: EnsemblDatabaseReference

AT5G45570
type: EnsemblDatabaseReference

AT4G29200
type: EnsemblDatabaseReference

EXGT-A1 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.067414
p value: 0.0197202878203587
refers to: EXGT-A1
refers to: 266215_at
t statistic: -4.23404410171949

AT4G09420 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.42262143333333
p value: 0.00398500395750199
refers to: 255059_at
refers to: AT4G09420
t statistic: -6.13500529218805

AT4G34860 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.31879535
p value: 3.98094285783468E-4
refers to: AT4G34860
refers to: 253224_at
t statistic: 9.07765157411494

AT4G29190 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.3393573
p value: 0.0129229953320503
refers to: AT4G29190
refers to: 253722_at
t statistic: 4.68981349959999

AT3G28310 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0164129
p value: 0.00261532024760251
refers to: AT3G28310
refers to: 256602_at
t statistic: 6.58853022154777

NAP UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.74919228333333
p value: 0.0398954992183307
refers to: NAP
refers to: 256300_at
t statistic: 3.45783348611038

258468_at
type: EFO_0005072
part of: A-AFFY-2

265188_at
type: EFO_0005072
part of: A-AFFY-2

PHO1-H8
type: EnsemblDatabaseReference

COR15A UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.8928501
p value: 0.0382847787454256
refers to: 263497_at
refers to: COR15A
t statistic: 3.49968743113078

263497_at
type: EFO_0005072
part of: A-AFFY-2

AT5G03350
type: EnsemblDatabaseReference

RSU1
type: EnsemblDatabaseReference

SRG3
type: EnsemblDatabaseReference

AT3G14560
type: EnsemblDatabaseReference

AT5G60610 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22351795
p value: 7.7427578999646E-4
refers to: AT5G60610
refers to: 247640_at
t statistic: 8.23522804098641

AT3G52500
type: EnsemblDatabaseReference

AT2G19970
type: EnsemblDatabaseReference

AKT2/3
type: EnsemblDatabaseReference

254707_at
type: EFO_0005072
part of: A-AFFY-2

EXGT-A3
type: EnsemblDatabaseReference

AT1G43590
type: EnsemblDatabaseReference

AT3G52500 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01700558333333
p value: 0.03603725187198
refers to: AT3G52500
refers to: 252048_at
t statistic: -3.56001899995378

AT2G15555
type: EnsemblDatabaseReference

AT2G20460
type: EnsemblDatabaseReference

EXGT-A3 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08520633333333
p value: 0.0129229953320503
refers to: 263598_at
refers to: EXGT-A3
t statistic: -4.68275152388143

AT4G28085 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.54728641666667
p value: 0.00206154682031982
refers to: AT4G28085
refers to: 253827_at
t statistic: -6.93272351145514

AT5G44530 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0899173
p value: 0.00444812061296998
refers to: AT5G44530
refers to: 249059_at
t statistic: 5.99212061082248

XTH33
type: EnsemblDatabaseReference

AT2G26630
type: EnsemblDatabaseReference

EIF-5A
type: EnsemblDatabaseReference

260914_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) GSM469861
type: Assay
has participant: A-AFFY-2

252167_at
type: EFO_0005072
part of: A-AFFY-2

AT3G12710 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.12381818333333
p value: 0.028362209917611
refers to: AT3G12710
refers to: 257701_at
t statistic: 3.81725265161703

AT2G39920 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.19978111666667
p value: 0.00971077846496734
refers to: 267361_at
refers to: AT2G39920
t statistic: 5.08217346153789

AT2G15555 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 5.47214293333333
p value: 1.0843973382211E-10
refers to: AT2G15555
refers to: 265486_at
t statistic: 61.3664408014223

AT1G62510
type: EnsemblDatabaseReference

265486_at
type: EFO_0005072
part of: A-AFFY-2

253485_at
type: EFO_0005072
part of: A-AFFY-2

PHO1-H8 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.4490639
p value: 0.0123467671057392
refers to: PHO1-H8
refers to: 259546_at
t statistic: -4.74243727939794

XTR6 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.66300111666667
p value: 0.00755215086266871
refers to: 254042_at
refers to: XTR6
t statistic: -5.39799487119487

ALDH2B7
type: EnsemblDatabaseReference

AT1G22550 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.12093228333333
p value: 0.00109260734616236
refers to: AT1G22550
refers to: 261924_at
t statistic: -7.74325704269133

CRK18
type: EnsemblDatabaseReference

252102_at
type: EFO_0005072
part of: A-AFFY-2

245353_at
type: EFO_0005072
part of: A-AFFY-2

EIF-5A UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.94850006666667
p value: 6.54822940701982E-6
refers to: EIF-5A
refers to: 262615_at
t statistic: 15.3972850393106

AT2G25510
type: EnsemblDatabaseReference

AtGolS1
type: EnsemblDatabaseReference

259915_at
type: EFO_0005072
part of: A-AFFY-2

A-AFFY-2
type: EFO_0000269

AT2G04460 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.73013088333333
p value: 0.00150490557376138
refers to: AT2G04460
refers to: 263851_at
t statistic: 7.32326705598968

AFH1 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.16297161666667
p value: 0.0371178304114622
refers to: AFH1
refers to: 257912_at
t statistic: -3.53130955489294

256940_at
type: EFO_0005072
part of: A-AFFY-2

ATMRU1 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 3.5248921
p value: 3.59497668426229E-7
refers to: ATMRU1
refers to: 249727_at
t statistic: 21.9159598728919

RALFL22
type: EnsemblDatabaseReference

257202_at
type: EFO_0005072
part of: A-AFFY-2

AT4G29190
type: EnsemblDatabaseReference

AT4G24780
type: EnsemblDatabaseReference

257701_at
type: EFO_0005072
part of: A-AFFY-2

252048_at
type: EFO_0005072
part of: A-AFFY-2

245032_at
type: EFO_0005072
part of: A-AFFY-2

AT5G39410
type: EnsemblDatabaseReference

ATPS3 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.46979013333334
p value: 0.0226585875002689
refers to: 252414_at
refers to: ATPS3
t statistic: 4.07909059906478

AT1G72430 DOWN in 'rts1-1' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.09578641666666
p value: 0.0456275857914578
refers to: AT1G72430
refers to: 260427_at
t statistic: -3.32850383911386

256602_at
type: EFO_0005072
part of: A-AFFY-2

AT3G05640 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.36060825
p value: 0.0266094804380356
refers to: AT3G05640
refers to: 258901_at
t statistic: 3.8822344684386

AT3G44070 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.24225233333333
p value: 3.63414347689715E-4
refers to: AT3G44070
refers to: 252663_at
t statistic: 9.212814150054

AtGH9C2 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.29481113333333
p value: 0.0381706953821847
refers to: AtGH9C2
refers to: 259736_at
t statistic: 3.50304102854419

266215_at
type: EFO_0005072
part of: A-AFFY-2

MIOX2
type: EnsemblDatabaseReference

M17
type: EnsemblDatabaseReference

AT1G73480
type: EnsemblDatabaseReference

ATEXPA1
type: EnsemblDatabaseReference

267034_at
type: EFO_0005072
part of: A-AFFY-2

EXGT-A1
type: EnsemblDatabaseReference

AtGolS1 UP in 'rts1-1' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4187429
p value: 0.0106778879686782
refers to: AtGolS1
refers to: 263320_at
t statistic: 4.95056724282292