HR4
type: EnsemblDatabaseReference

E-GEOD-18667
type: microarray 1colour mrna differential
RO_0002162: Arabidopsis thaliana
description: affy_meja_arabidopsis - We want to determine if the presence of C2 modifies the cell transcriptome and its response to methyl jasmonate. Comparison of control lines and transgenic lines expressing C2 in basal conditions and after treatment with 50uM MeJA for 10 hours. C2 lines are expressing geminivirus C2 under a 35S promoter. PR1-LUC have a luciferase transgene under the control of the promoter of PR1; since the plants are not induced, these are the control plants (resistant to kanamycin, but not expressing anything else) Keywords: gene knock in (transgenic),treated vs untreated comparison 12 arrays - ATH1

ATEXT4
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PNP-A
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252539_at
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AT2G41990
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258100_at
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CHI
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AtGolS4
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250296_at
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AT4G17470 DOWN in '35S::C2' vs 'control' in 'no compound'
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LAL5
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258957_at
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(Assay) GSM463700
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SHM7
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ATSDI1
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AT4G38860 DOWN in '35S::C2' vs 'control' in 'no compound'
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DTXL1 UP in '35S::C2' vs 'control' in 'methyl jasmonate'
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refers to: DTXL1
t statistic: 4.1209243485849

APR1
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AT1G73040
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AT4G07820 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
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PER47 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
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t statistic: -6.79744711921756

ACD6 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
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t statistic: -13.3307545272022

ALPHA-DOX1
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260116_at
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ATEXT4 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
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260203_at
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AIG1
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scpl30 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
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PER47
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(Factor value) COMPOUND/none
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AT2G16660
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CML41
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AT2G25510 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
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AT1G04770
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APS3 DOWN in '35S::C2' vs 'control' in 'no compound'
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AT3G58550 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
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t statistic: -11.0624518797686

ATEXPB3
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AT2G32020 UP in '35S::C2' vs 'control' in 'methyl jasmonate'
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refers to: AT2G32020
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LSU1 DOWN in '35S::C2' vs 'control' in 'no compound'
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p value: 0.0249988151137709
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(Assay) GSM463702
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ACD6
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ERF035 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
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t statistic: -7.96663729006961

AT5G53480 DOWN in '35S::C2' vs 'control' in 'no compound'
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252487_at
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BGL2 DOWN in '35S::C2' vs 'control' in 'no compound'
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t statistic: -9.31754473555486

256368_at
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UGT76E11
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XBAT34
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WRKY54 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
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LOX2
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AT1G04770 DOWN in '35S::C2' vs 'control' in 'no compound'
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260101_at
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PR1
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ALPHA-TIP UP in '35S::C2' vs 'control' in 'no compound'
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261459_at
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AT4G22610
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ATGSTF12 UP in '35S::C2' vs 'control' in 'no compound'
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ANAC019
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260088_at
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UGT76E12
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(Assay) GSM463691
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PAD3
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245393_at
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245265_at
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AT1G10585
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CML10
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AT1G67750
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ATGSTF12
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AT2G32020
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LURP1
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(Sample) ecotype/Col-0
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266070_at
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250942_at
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scpl30
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ATGSTU4 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
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t statistic: -4.74022818464616

ATPRB1
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AT5G53480
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AT4G17470
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AT3G60420
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AT2G41730
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WAK1
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251336_at
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ELI3-2 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
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t statistic: -5.32044096553954

MLP328
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AT1G64590
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263539_at
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AT3G45730
type: EnsemblDatabaseReference

ASN1
type: EnsemblDatabaseReference

263098_at
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251625_at
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HSP17.6C
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AT5G12050
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245196_at
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265334_at
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ATKTI1
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255877_at
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AT2G19970
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HSP17.6II
type: EnsemblDatabaseReference

266693_at
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AT4G29270
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WAXY UP in '35S::C2' vs 'control' in 'methyl jasmonate'
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p value: 0.0301076957587913
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ATGSTU4
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(Assay) GSM463698
type: Assay
has participant: A-AFFY-2

AT4G29270 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0201741884957
p value: 0.00595368269946181
refers to: 253720_at
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t statistic: -6.02910935477361

AT3G22570
type: EnsemblDatabaseReference

(Sample) organism/Arabidopsis thaliana
type: Arabidopsis thaliana
property type: organism
property value: Arabidopsis thaliana

DIN11
type: EnsemblDatabaseReference

CYP81F4 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.5636012730489
p value: 0.0301058569482674
refers to: 253073_at
refers to: CYP81F4
t statistic: -4.69449465637954

APS3
type: EnsemblDatabaseReference

AT3G16530
type: EnsemblDatabaseReference

NDB4
type: EnsemblDatabaseReference

ACC2
type: EnsemblDatabaseReference

257206_at
type: EFO_0005072
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AT5G03350 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05014632481473
p value: 0.0426765682333886
refers to: 250942_at
refers to: AT5G03350
t statistic: -3.61953806468721

AT4G16260
type: EnsemblDatabaseReference

265668_at
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261177_at
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WAXY
type: EnsemblDatabaseReference

251610_at
type: EFO_0005072
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ALPHA-DOX1 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.15233863955251
p value: 3.94771250386922E-4
refers to: ALPHA-DOX1
refers to: 258957_at
t statistic: -10.400946140013

(Factor value) GENOTYPE/control
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property type: GENOTYPE
property value: control

ATCSLA01
type: EnsemblDatabaseReference

ATPF
type: EnsemblDatabaseReference

251400_at
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LOX2 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10261498312096
p value: 0.0286440361484379
refers to: 252618_at
refers to: LOX2
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LTP8 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01423882958808
p value: 0.0366416257156286
refers to: LTP8
refers to: 265334_at
t statistic: -4.46227842615223

AT1G66800
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UGT73B1
type: EnsemblDatabaseReference

AtGH9B8
type: EnsemblDatabaseReference

IRT1 UP in '35S::C2' vs 'control' in 'no compound'
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refers to: IRT1
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AT3G52360 DOWN in '35S::C2' vs 'control' in 'no compound'
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AT2G41990 UP in '35S::C2' vs 'control' in 'no compound'
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t statistic: 4.26645060935954

AT3G52360
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AT1G21100
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SAG13
type: EnsemblDatabaseReference

ATEXPA15
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253281_at
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IRT1
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AT1G67865
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254396_at
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258277_at
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NRT1.8 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.13281048500909
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refers to: 254396_at
refers to: NRT1.8
t statistic: -6.07527056025405

GASA6
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TRI UP in '35S::C2' vs 'control' in 'methyl jasmonate'
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IRT1 UP in '35S::C2' vs 'control' in 'methyl jasmonate'
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t statistic: 6.46385032270629

AT4G07820
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UGT72E2
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HR4
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UGT78D1
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AT4G16260 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
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AT2G41990
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AT3G15650
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AT1G66800 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
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AT5G03350 DOWN in '35S::C2' vs 'control' in 'no compound'
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AT2G40460
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CHI
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UGT78D1 DOWN in '35S::C2' vs 'control' in 'no compound'
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LSU1
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SHM7 DOWN in '35S::C2' vs 'control' in 'no compound'
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refers to: SHM7
t statistic: -4.34421061454527

250083_at
type: EFO_0005072
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BGL2 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
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p value: 4.94603548095686E-4
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t statistic: -9.78219700927114

AT3G28220
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ZFP5
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UGT72E2 DOWN in '35S::C2' vs 'control' in 'no compound'
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t statistic: -5.58241189264054

PDF2.1 DOWN in '35S::C2' vs 'control' in 'no compound'
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MRN1
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AT4G38860
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AT3G57930 DOWN in '35S::C2' vs 'control' in 'no compound'
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t statistic: -7.77290307114569

CYP81F4
type: EnsemblDatabaseReference

ALPHA-DOX1
type: EnsemblDatabaseReference

CML41 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.23861488344693
p value: 0.00763173819595665
refers to: CML41
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t statistic: -5.62510390850282

266770_at
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252265_at
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AIG1
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252537_at
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263208_at
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(Assay) GSM463692
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256459_at
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AT2G16660
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PR5
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CML41
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AT1G04770
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AT3G58550
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ATEXPB3
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CML10 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
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t statistic: -9.75997043619416

WRKY54
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NRT1.8
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257382_at
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UGT73B1 DOWN in '35S::C2' vs 'control' in 'no compound'
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refers to: UGT73B1
t statistic: -5.60051906828372

253332_at
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HSP17.6C DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.32868702103209
p value: 0.0473691546842612
refers to: HSP17.6C
refers to: 260978_at
t statistic: -3.49149679704885

(Assay) GSM463701
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has participant: A-AFFY-2

AT1G21100 DOWN in '35S::C2' vs 'control' in 'no compound'
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t statistic: -5.43333991373999

SEN1 UP in '35S::C2' vs 'control' in 'no compound'
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fold change: 1.80722583379502
p value: 0.0177698276654328
refers to: SEN1
refers to: 253161_at
t statistic: 6.47637171389344

XBAT34
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PDF2.1
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264960_at
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Analysis of '35S::C2' vs 'control' in 'no compound'
type: MicroarrayDifferentialExpressionAnalysis

LOX2
type: EnsemblDatabaseReference

PR1
type: EnsemblDatabaseReference

(Factor value) COMPOUND/methyl jasmonate
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property type: COMPOUND
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MLP329 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.60966342189035
p value: 2.60703767941216E-5
refers to: 266330_at
refers to: MLP329
t statistic: -17.3143013122324

260522_x_at
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ATEXPB3 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
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p value: 0.0221497252784836
refers to: ATEXPB3
refers to: 253815_at
t statistic: -5.60633882952831

ANAC019
type: EnsemblDatabaseReference

SEN1
type: EnsemblDatabaseReference

255160_at
type: EFO_0005072
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HR4 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.24903976767802
p value: 0.00240257646906049
refers to: HR4
refers to: 252170_at
t statistic: -7.59583422573266

UGT76E12
type: EnsemblDatabaseReference

(Assay) GSM463699
type: Assay
has participant: A-AFFY-2

MRN1 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.31381703599737
p value: 0.00340316598609768
refers to: 249205_at
refers to: MRN1
t statistic: -7.01194235592739

AT2G40460 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03490575407473
p value: 0.0115182562168515
refers to: 255877_at
refers to: AT2G40460
t statistic: -8.88466599988629

ATRLP40
type: EnsemblDatabaseReference

AT2G16005 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05114807248487
p value: 0.0212488377855504
refers to: AT2G16005
refers to: 263098_at
t statistic: -4.41275043756357

266276_at
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256935_at
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part of: A-AFFY-2

253815_at
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part of: A-AFFY-2

249205_at
type: EFO_0005072
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ATGSTF12
type: EnsemblDatabaseReference

AT4G14060
type: EnsemblDatabaseReference

DTXL1
type: EnsemblDatabaseReference

252984_at
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AT2G32020
type: EnsemblDatabaseReference

245254_at
type: EFO_0005072
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AT3G15650 UP in '35S::C2' vs 'control' in 'methyl jasmonate'
type: IncreasedDifferentialExpressionRatio
fold change: 1.67243254454476
p value: 0.00381426373700701
refers to: AT3G15650
refers to: 258270_at
t statistic: 6.78877328986472

260012_at
type: EFO_0005072
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RPS18
type: EnsemblDatabaseReference

AT2G33850 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.37502014883906
p value: 0.0266662971782427
refers to: 267459_at
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t statistic: -4.98276341386588

AT5G47950 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
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p value: 0.00534836470634015
refers to: AT5G47950
refers to: 248723_at
t statistic: -6.21447653485952

251531_at
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260568_at
type: EFO_0005072
part of: A-AFFY-2

255284_at
type: EFO_0005072
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PER21
type: EnsemblDatabaseReference

AT5G47950
type: EnsemblDatabaseReference

261956_at
type: EFO_0005072
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265837_at
type: EFO_0005072
part of: A-AFFY-2

ATPRB1
type: EnsemblDatabaseReference

ANAC019 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.82272230302905
p value: 0.0184513412926503
refers to: ANAC019
refers to: 260203_at
t statistic: -4.58788765468748

AT5G53480
type: EnsemblDatabaseReference

Arabidopsis thaliana
type: OBI_0100026

CHI DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.38772530206488
p value: 4.28842733812024E-4
refers to: CHI
refers to: 260568_at
t statistic: -10.1945147950198

BGL2
type: EnsemblDatabaseReference

AT1G67750 UP in '35S::C2' vs 'control' in 'methyl jasmonate'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00237664469711
p value: 0.00356564716824625
refers to: 245196_at
refers to: AT1G67750
t statistic: 6.89586060490892

AT5G23840
type: EnsemblDatabaseReference

256577_at
type: EFO_0005072
part of: A-AFFY-2

AT3G26460
type: EnsemblDatabaseReference

ATSDI1 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -2.15489849639021
p value: 0.0221497252784836
refers to: 248676_at
refers to: ATSDI1
t statistic: -5.68274668049107

245465_at
type: EFO_0005072
part of: A-AFFY-2

AT2G25510
type: EnsemblDatabaseReference

SAG13 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.7138881479954
p value: 0.00660082236704132
refers to: SAG13
refers to: 266292_at
t statistic: -5.8918363937175

ATKTI1
type: EnsemblDatabaseReference

253161_at
type: EFO_0005072
part of: A-AFFY-2

UGT76E11 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1522807992693
p value: 0.0403197140249332
refers to: 252482_at
refers to: UGT76E11
t statistic: -4.3161323466486

TAT3
type: EnsemblDatabaseReference

ERF035
type: EnsemblDatabaseReference

260948_at
type: EFO_0005072
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AT4G22610 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.4294790286227
p value: 0.0232891362145205
refers to: AT4G22610
refers to: 254326_at
t statistic: -5.49554382503257

AT4G29270
type: EnsemblDatabaseReference

267595_at
type: EFO_0005072
part of: A-AFFY-2

AT3G57930
type: EnsemblDatabaseReference

ATGSTU4
type: EnsemblDatabaseReference

CYP89A5
type: EnsemblDatabaseReference

AT3G22570
type: EnsemblDatabaseReference

AIG1 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03698587387388
p value: 0.00334794385282277
refers to: AIG1
refers to: 260116_at
t statistic: -7.07725392084595

MLP34
type: EnsemblDatabaseReference

MLP329 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -2.22623212925695
p value: 0.0115736559164769
refers to: 266330_at
refers to: MLP329
t statistic: -8.17894851337065

AT3G26460 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -2.05569113657533
p value: 3.22895727768352E-4
refers to: AT3G26460
refers to: 256878_at
t statistic: -11.5344830557655

GASA6 UP in '35S::C2' vs 'control' in 'methyl jasmonate'
type: IncreasedDifferentialExpressionRatio
fold change: 2.06235703578464
p value: 0.0212488377855504
refers to: GASA6
refers to: 260221_at
t statistic: 4.41877273838792

ELI3-2
type: EnsemblDatabaseReference

APS3
type: EnsemblDatabaseReference

245329_at
type: EFO_0005072
part of: A-AFFY-2

AT3G16530
type: EnsemblDatabaseReference

AT2G16005
type: EnsemblDatabaseReference

ACC2
type: EnsemblDatabaseReference

MLP329
type: EnsemblDatabaseReference

AT4G16260
type: EnsemblDatabaseReference

266385_at
type: EFO_0005072
part of: A-AFFY-2

AT2G33850
type: EnsemblDatabaseReference

267459_at
type: EFO_0005072
part of: A-AFFY-2

WAXY
type: EnsemblDatabaseReference

AT4G22610
type: EnsemblDatabaseReference

AT3G45710
type: EnsemblDatabaseReference

ACC2 UP in '35S::C2' vs 'control' in 'methyl jasmonate'
type: IncreasedDifferentialExpressionRatio
fold change: 1.21476998553045
p value: 7.38633045698857E-4
refers to: 256459_at
refers to: ACC2
t statistic: 9.2295318575202

252965_at
type: EFO_0005072
part of: A-AFFY-2

AT3G45730 UP in '35S::C2' vs 'control' in 'no compound'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02063585624277
p value: 0.0485952325091614
refers to: AT3G45730
refers to: 252539_at
t statistic: 4.03182765959

LAL5 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.30839619717502
p value: 0.00826228898296438
refers to: 258100_at
refers to: LAL5
t statistic: -5.50041106492393

258270_at
type: EFO_0005072
part of: A-AFFY-2

MIOX2 UP in '35S::C2' vs 'control' in 'no compound'
type: IncreasedDifferentialExpressionRatio
fold change: 1.10462862683297
p value: 0.0174567815106965
refers to: MIOX2
refers to: 266693_at
t statistic: 6.71164528664076

ATPF
type: EnsemblDatabaseReference

AT1G06100 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.19487329417544
p value: 0.00615857622622003
refers to: 260948_at
refers to: AT1G06100
t statistic: -5.98775959708507

245025_at
type: EFO_0005072
part of: A-AFFY-2

267580_at
type: EFO_0005072
part of: A-AFFY-2

AT1G66800
type: EnsemblDatabaseReference

AT5G03350
type: EnsemblDatabaseReference

254550_at
type: EFO_0005072
part of: A-AFFY-2

ATCSLA01 UP in '35S::C2' vs 'control' in 'methyl jasmonate'
type: IncreasedDifferentialExpressionRatio
fold change: 1.69090616591059
p value: 0.0405450291305979
refers to: 245465_at
refers to: ATCSLA01
t statistic: 3.66604167450335

266353_at
type: EFO_0005072
part of: A-AFFY-2

ATEXPA15
type: EnsemblDatabaseReference

ASN1 UP in '35S::C2' vs 'control' in 'no compound'
type: IncreasedDifferentialExpressionRatio
fold change: 1.10868167015944
p value: 0.0221497252784836
refers to: 252415_at
refers to: ASN1
t statistic: 5.82578362393987

ATEXPA15 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.44506330499956
p value: 0.0115736559164769
refers to: ATEXPA15
refers to: 266770_at
t statistic: -8.23995851888018

AT1G06100
type: EnsemblDatabaseReference

ATRLP40 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.55379100160598
p value: 1.21358891454221E-4
refers to: ATRLP40
refers to: 257592_at
t statistic: -13.8789475547457

248723_at
type: EFO_0005072
part of: A-AFFY-2

BAP1
type: EnsemblDatabaseReference

UGT72E2
type: EnsemblDatabaseReference

AT1G29660 UP in '35S::C2' vs 'control' in 'methyl jasmonate'
type: IncreasedDifferentialExpressionRatio
fold change: 1.11368018168648
p value: 3.86902907263906E-4
refers to: 259786_at
refers to: AT1G29660
t statistic: 10.6087656803046

UGT78D1
type: EnsemblDatabaseReference

257592_at
type: EFO_0005072
part of: A-AFFY-2

ALPHA-TIP
type: EnsemblDatabaseReference

AT4G22212
type: EnsemblDatabaseReference

249814_at
type: EFO_0005072
part of: A-AFFY-2

AT3G15650
type: EnsemblDatabaseReference

AT3G04210 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14841566326205
p value: 0.00736427888784954
refers to: 258537_at
refers to: AT3G04210
t statistic: -5.68603935807334

AT1G29660
type: EnsemblDatabaseReference

AT2G40460
type: EnsemblDatabaseReference

LTP8
type: EnsemblDatabaseReference

252269_at
type: EFO_0005072
part of: A-AFFY-2

254361_at
type: EFO_0005072
part of: A-AFFY-2

LSU1
type: EnsemblDatabaseReference

ATAGP30
type: EnsemblDatabaseReference

MLP34 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.24643009683434
p value: 3.62925581374818E-4
refers to: MLP34
refers to: 262260_at
t statistic: -10.7574690330806

AT3G51660
type: EnsemblDatabaseReference

266292_at
type: EFO_0005072
part of: A-AFFY-2

AtGH9B8 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.20299769538812
p value: 0.0119373833837593
refers to: AtGH9B8
refers to: 267595_at
t statistic: -8.00491548782979

265588_at
type: EFO_0005072
part of: A-AFFY-2

AT3G28220
type: EnsemblDatabaseReference

ZFP5
type: EnsemblDatabaseReference

(Sample) genotype/35S::C2
type: EFO_0000001
property type: genotype
property value: 35S::C2

250327_at
type: EFO_0005072
part of: A-AFFY-2

TRI
type: EnsemblDatabaseReference

UGT76E12 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00504964082872
p value: 0.0198757288092828
refers to: 252487_at
refers to: UGT76E12
t statistic: -4.4785573772573

MRN1
type: EnsemblDatabaseReference

252076_at
type: EFO_0005072
part of: A-AFFY-2

266267_at
type: EFO_0005072
part of: A-AFFY-2

CYP81F4
type: EnsemblDatabaseReference

(Assay) GSM463694
type: Assay
has participant: A-AFFY-2

XBAT34 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.28548473290238
p value: 0.00356564716824625
refers to: XBAT34
refers to: 245329_at
t statistic: -6.88536684420361

ZFP5 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21153272061975
p value: 0.00319124152726683
refers to: 263208_at
refers to: ZFP5
t statistic: -7.18651594648633

266330_at
type: EFO_0005072
part of: A-AFFY-2

PR5
type: EnsemblDatabaseReference

263210_at
type: EFO_0005072
part of: A-AFFY-2

WAK1 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -2.77828643147731
p value: 1.52507873182421E-5
refers to: WAK1
refers to: 259561_at
t statistic: -19.2134261663223

(Factor value) GENOTYPE/35S::C2
type: EFO_0000001
property type: GENOTYPE
property value: 35S::C2

MIOX2
type: EnsemblDatabaseReference

AT3G58550
type: EnsemblDatabaseReference

AT3G04210
type: EnsemblDatabaseReference

WRKY54
type: EnsemblDatabaseReference

ATEXT4
type: EnsemblDatabaseReference

NRT1.8
type: EnsemblDatabaseReference

PNP-A
type: EnsemblDatabaseReference

NDB4 UP in '35S::C2' vs 'control' in 'methyl jasmonate'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00062551970999
p value: 8.26444498313031E-4
refers to: 265422_at
refers to: NDB4
t statistic: 9.01942183060388

APR1 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.70346977347021
p value: 0.0286440361484379
refers to: APR1
refers to: 255284_at
t statistic: -4.76072206543999

AT1G73040 UP in '35S::C2' vs 'control' in 'no compound'
type: IncreasedDifferentialExpressionRatio
fold change: 1.33595858381703
p value: 0.0141439274639882
refers to: AT1G73040
refers to: 262357_at
t statistic: 7.50550816870063

PDF2.1
type: EnsemblDatabaseReference

AtGolS4
type: EnsemblDatabaseReference

Analysis of '35S::C2' vs 'control' in 'methyl jasmonate'
type: MicroarrayDifferentialExpressionAnalysis

LAL5
type: EnsemblDatabaseReference

266141_at
type: EFO_0005072
part of: A-AFFY-2

262260_at
type: EFO_0005072
part of: A-AFFY-2

SHM7
type: EnsemblDatabaseReference

(Assay) GSM463697
type: Assay
has participant: A-AFFY-2

ATSDI1
type: EnsemblDatabaseReference

(Assay) GSM463696
type: Assay
has participant: A-AFFY-2

AT1G73040
type: EnsemblDatabaseReference

APR1
type: EnsemblDatabaseReference

AT4G14060 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.57037934542374
p value: 0.00429512963957068
refers to: 245267_at
refers to: AT4G14060
t statistic: -6.58444378614371

265611_at
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part of: A-AFFY-2

251420_at
type: EFO_0005072
part of: A-AFFY-2

AT3G52360
type: EnsemblDatabaseReference

SEN1
type: EnsemblDatabaseReference

AT3G45710 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03037836536037
p value: 0.0485952325091614
refers to: AT3G45710
refers to: 252537_at
t statistic: -4.03174553387372

ATRLP40
type: EnsemblDatabaseReference

PNP-A DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -2.85476899045791
p value: 3.77983717801403E-6
refers to: 266070_at
refers to: PNP-A
t statistic: -25.1162989919649

261804_at
type: EFO_0005072
part of: A-AFFY-2

PER47
type: EnsemblDatabaseReference

252482_at
type: EFO_0005072
part of: A-AFFY-2

248272_at
type: EFO_0005072
part of: A-AFFY-2

MLP328 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -2.61820824002979
p value: 3.94771250386922E-4
refers to: 266353_at
refers to: MLP328
t statistic: -10.4877806504692

DTXL1
type: EnsemblDatabaseReference

AT4G14060
type: EnsemblDatabaseReference

(Assay) GSM463695
type: Assay
has participant: A-AFFY-2

245267_at
type: EFO_0005072
part of: A-AFFY-2

256878_at
type: EFO_0005072
part of: A-AFFY-2

AT5G23840 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.13982036744037
p value: 4.80798761433015E-4
refers to: AT5G23840
refers to: 249814_at
t statistic: -9.91689616459799

ACD6
type: EnsemblDatabaseReference

RPS18
type: EnsemblDatabaseReference

LTP8 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.11636715293852
p value: 0.00340617090037567
refers to: LTP8
refers to: 265334_at
t statistic: -6.96519034840297

265422_at
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part of: A-AFFY-2

248676_at
type: EFO_0005072
part of: A-AFFY-2

UGT76E11
type: EnsemblDatabaseReference

PER21
type: EnsemblDatabaseReference

252618_at
type: EFO_0005072
part of: A-AFFY-2

ATPF DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.92265696010056
p value: 0.0329558552653438
refers to: 245025_at
refers to: ATPF
t statistic: -4.60207443492012

AT5G47950
type: EnsemblDatabaseReference

AT4G38860
type: EnsemblDatabaseReference

252136_at
type: EFO_0005072
part of: A-AFFY-2

254326_at
type: EFO_0005072
part of: A-AFFY-2

BGL2
type: EnsemblDatabaseReference

261191_at
type: EFO_0005072
part of: A-AFFY-2

TAT3 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -2.66215601953513
p value: 3.94771250386922E-4
refers to: TAT3
refers to: 263539_at
t statistic: -10.3471506924723

265414_at
type: EFO_0005072
part of: A-AFFY-2

267076_at
type: EFO_0005072
part of: A-AFFY-2

258537_at
type: EFO_0005072
part of: A-AFFY-2

AT5G23840
type: EnsemblDatabaseReference

252170_at
type: EFO_0005072
part of: A-AFFY-2

AT3G26460
type: EnsemblDatabaseReference

PAD3
type: EnsemblDatabaseReference

259925_at
type: EFO_0005072
part of: A-AFFY-2

MLP34 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.53216489818058
p value: 0.0174567815106965
refers to: MLP34
refers to: 262260_at
t statistic: -6.52757043777951

AT1G67865 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01348086366626
p value: 0.0479551461052013
refers to: AT1G67865
refers to: 260012_at
t statistic: -4.05693780712337

AT3G45730 UP in '35S::C2' vs 'control' in 'methyl jasmonate'
type: IncreasedDifferentialExpressionRatio
fold change: 1.09201198564221
p value: 0.0313563190217133
refers to: AT3G45730
refers to: 252539_at
t statistic: 3.92791064475565

AT5G12050 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.16748019788949
p value: 0.0278008341962462
refers to: AT5G12050
refers to: 250327_at
t statistic: -4.9162777010469

LURP1 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -2.30962042580965
p value: 1.57248941089222E-4
refers to: LURP1
refers to: 265837_at
t statistic: -12.857124930031

DIN11 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.78900827407852
p value: 0.0497312761368517
refers to: 252265_at
refers to: DIN11
t statistic: -3.44159936798827

TAT3
type: EnsemblDatabaseReference

ERF035
type: EnsemblDatabaseReference

AT1G10585
type: EnsemblDatabaseReference

AT1G67750
type: EnsemblDatabaseReference

CML10
type: EnsemblDatabaseReference

ATKTI1 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08739913220722
p value: 0.00686516653665138
refers to: ATKTI1
refers to: 260101_at
t statistic: -5.78666146791999

HSP17.6II DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.88354567778088
p value: 0.028917851312121
refers to: HSP17.6II
refers to: 250296_at
t statistic: -4.04377147380428

263402_at
type: EFO_0005072
part of: A-AFFY-2

AT3G57930
type: EnsemblDatabaseReference

CYP89A5
type: EnsemblDatabaseReference

260978_at
type: EFO_0005072
part of: A-AFFY-2

MLP34
type: EnsemblDatabaseReference

ELI3-2
type: EnsemblDatabaseReference

LURP1
type: EnsemblDatabaseReference

AT2G16005
type: EnsemblDatabaseReference

266155_at
type: EFO_0005072
part of: A-AFFY-2

MLP329
type: EnsemblDatabaseReference

AT3G16530 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02376700785544
p value: 0.0192849166304686
refers to: 257206_at
refers to: AT3G16530
t statistic: -4.5303951365687

AT2G33850
type: EnsemblDatabaseReference

RPS18 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.17263258749757
p value: 0.0155571382659149
refers to: 244969_at
refers to: RPS18
t statistic: -7.17680883465407

scpl30
type: EnsemblDatabaseReference

AT3G45710
type: EnsemblDatabaseReference

AT2G41730
type: EnsemblDatabaseReference

AT4G17470
type: EnsemblDatabaseReference

AT3G60420
type: EnsemblDatabaseReference

PER21 UP in '35S::C2' vs 'control' in 'methyl jasmonate'
type: IncreasedDifferentialExpressionRatio
fold change: 1.57739788135102
p value: 0.00170015455571561
refers to: PER21
refers to: 265471_at
t statistic: 8.13353722173568

WAK1
type: EnsemblDatabaseReference

AT3G28220 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.84404731721855
p value: 0.0198270831645836
refers to: AT3G28220
refers to: 256577_at
t statistic: -6.14396426625728

ATPRB1 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01180950704125
p value: 0.0068037607759059
refers to: ATPRB1
refers to: 266383_at
t statistic: -5.8267006800217

245422_at
type: EFO_0005072
part of: A-AFFY-2

260221_at
type: EFO_0005072
part of: A-AFFY-2

MLP328
type: EnsemblDatabaseReference

AT1G64590
type: EnsemblDatabaseReference

AT3G45730
type: EnsemblDatabaseReference

ASN1
type: EnsemblDatabaseReference

AT2G16660 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.22770280662709
p value: 0.0288206895418269
refers to: 265414_at
refers to: AT2G16660
t statistic: -4.74296640811024

AT5G03350
type: EnsemblDatabaseReference

PR1 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -4.61353627668385
p value: 1.52507873182421E-5
refers to: PR1
refers to: 266385_at
t statistic: -18.9998207678823

HSP17.6C
type: EnsemblDatabaseReference

AT5G12050
type: EnsemblDatabaseReference

259786_at
type: EFO_0005072
part of: A-AFFY-2

AT3G22570 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04058208763923
p value: 0.0194448323263318
refers to: AT3G22570
refers to: 256935_at
t statistic: -4.51667442932523

247059_at
type: EFO_0005072
part of: A-AFFY-2

AT3G51660 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.36648135005269
p value: 0.0221497252784836
refers to: AT3G51660
refers to: 252076_at
t statistic: -5.62992987696396

AT2G19970
type: EnsemblDatabaseReference

AT4G22212 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.11490232334482
p value: 0.0221497252784836
refers to: AT4G22212
refers to: 254361_at
t statistic: -5.65771320935785

253720_at
type: EFO_0005072
part of: A-AFFY-2

262357_at
type: EFO_0005072
part of: A-AFFY-2

HSP17.6II
type: EnsemblDatabaseReference

260126_at
type: EFO_0005072
part of: A-AFFY-2

(Sample) genotype/PR1::luciferase
type: EFO_0000001
property type: genotype
property value: PR1::luciferase

CYP89A5 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.54576484968844
p value: 0.0219788157587938
refers to: 266155_at
refers to: CYP89A5
t statistic: -5.98328554248956

AT1G06100
type: EnsemblDatabaseReference

AT2G19970 UP in '35S::C2' vs 'control' in 'methyl jasmonate'
type: IncreasedDifferentialExpressionRatio
fold change: 1.35525689016264
p value: 0.00340316598609768
refers to: 265588_at
refers to: AT2G19970
t statistic: 7.00706799295408

266383_at
type: EFO_0005072
part of: A-AFFY-2

DIN11
type: EnsemblDatabaseReference

AtGolS4 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.57044668857888
p value: 3.60384767925319E-4
refers to: AtGolS4
refers to: 264940_at
t statistic: -10.8561593871612

267457_at
type: EFO_0005072
part of: A-AFFY-2

BAP1
type: EnsemblDatabaseReference

AT2G41730 UP in '35S::C2' vs 'control' in 'methyl jasmonate'
type: IncreasedDifferentialExpressionRatio
fold change: 1.64228598761847
p value: 0.0358726521569787
refers to: AT2G41730
refers to: 260522_x_at
t statistic: 3.7958570623514

NDB4
type: EnsemblDatabaseReference

AT3G60420 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.30922415575045
p value: 3.43363932834706E-4
refers to: AT3G60420
refers to: 251400_at
t statistic: -11.1474710438266

ALPHA-TIP
type: EnsemblDatabaseReference

AT4G22212
type: EnsemblDatabaseReference

AT1G29660
type: EnsemblDatabaseReference

264940_at
type: EFO_0005072
part of: A-AFFY-2

LTP8
type: EnsemblDatabaseReference

253073_at
type: EFO_0005072
part of: A-AFFY-2

ATAGP30
type: EnsemblDatabaseReference

PR5 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0864906668812
p value: 0.0252924792862112
refers to: PR5
refers to: 259925_at
t statistic: -4.18680856106071

AT3G51660
type: EnsemblDatabaseReference

252415_at
type: EFO_0005072
part of: A-AFFY-2

ATCSLA01
type: EnsemblDatabaseReference

AT2G25510
type: EnsemblDatabaseReference

TRI
type: EnsemblDatabaseReference

A-AFFY-2
type: EFO_0000269

AT1G10585 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -2.11553118570616
p value: 8.26444498313031E-4
refers to: AT1G10585
refers to: 263210_at
t statistic: -9.05702636500512

259561_at
type: EFO_0005072
part of: A-AFFY-2

PAD3 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -2.25643243781738
p value: 0.00451307327806609
refers to: 258277_at
refers to: PAD3
t statistic: -6.53157951431355

UGT73B1
type: EnsemblDatabaseReference

AtGH9B8
type: EnsemblDatabaseReference

ATAGP30 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.46247115064311
p value: 0.0317837186966935
refers to: 267457_at
refers to: ATAGP30
t statistic: -4.64406240221068

(Assay) GSM463693
type: Assay
has participant: A-AFFY-2

AT1G21100
type: EnsemblDatabaseReference

SAG13
type: EnsemblDatabaseReference

245531_at
type: EFO_0005072
part of: A-AFFY-2

AT1G21100 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00457210240657
p value: 0.00752190431913619
refers to: 261459_at
refers to: AT1G21100
t statistic: -5.65197323987696

IRT1
type: EnsemblDatabaseReference

AT1G67865
type: EnsemblDatabaseReference

AT1G64590 DOWN in '35S::C2' vs 'control' in 'methyl jasmonate'
type: DecreasedDifferentialExpressionRatio
fold change: -1.27705834560198
p value: 2.29949401734481E-4
refers to: AT1G64590
refers to: 261956_at
t statistic: -12.1544154758381

GASA6
type: EnsemblDatabaseReference

MIOX2
type: EnsemblDatabaseReference

BAP1 DOWN in '35S::C2' vs 'control' in 'no compound'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10095786135376
p value: 0.0385465793406841
refers to: BAP1
refers to: 251336_at
t statistic: -4.37723950702856

265471_at
type: EFO_0005072
part of: A-AFFY-2

AT4G07820
type: EnsemblDatabaseReference

AT3G04210
type: EnsemblDatabaseReference