Cyp17a1
type: EnsemblDatabaseReference

Rcn2 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.50919030212804
p value: 6.50128123174495E-4
refers to: Rcn2
refers to: 1422449_s_at
t statistic: -10.3585273367151

Tubb2a UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.14673828127533
p value: 0.0160895135501173
refers to: Tubb2a
refers to: 1427347_s_at
t statistic: 5.0467847651331

Sorl1
type: EnsemblDatabaseReference

L3hypdh
type: EnsemblDatabaseReference

Tubb2a
type: EnsemblDatabaseReference

1421363_at
type: EFO_0005072
part of: A-AFFY-36

Tubb2a
type: EnsemblDatabaseReference

Neu1
type: EnsemblDatabaseReference

1454971_x_at
type: EFO_0005072
part of: A-AFFY-36

Bid DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.12312016204816
p value: 0.00660455539410983
refers to: Bid
refers to: 1417045_at
t statistic: -6.34267796645534

1454758_a_at
type: EFO_0005072
part of: A-AFFY-36

Sqle
type: EnsemblDatabaseReference

Gstt3 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.10688385804772
p value: 0.00312610263385662
refers to: 1423891_at
refers to: Gstt3
t statistic: 7.54318475034087

Egr1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.53300031937376
p value: 0.00161896605022472
refers to: 1417065_at
refers to: Egr1
t statistic: -8.88471472455712

Neu1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.11735516645343
p value: 0.00216579473935295
refers to: Neu1
refers to: 1416831_at
t statistic: -8.19930313692664

1421425_a_at
type: EFO_0005072
part of: A-AFFY-36

Ugt2b38
type: EnsemblDatabaseReference

1425336_x_at
type: EFO_0005072
part of: A-AFFY-36

1419636_at
type: EFO_0005072
part of: A-AFFY-36

1423397_at
type: EFO_0005072
part of: A-AFFY-36

Gm21967 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.23014952566508
p value: 0.00407647881708705
refers to: Gm21967
refers to: 1426607_at
t statistic: -7.01469803811506

Cd36 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17925305509091
p value: 0.0204246433758608
refers to: 1423166_at
refers to: Cd36
t statistic: 4.57597129589549

1417045_at
type: EFO_0005072
part of: A-AFFY-36

1424692_at
type: EFO_0005072
part of: A-AFFY-36

Egr1
type: EnsemblDatabaseReference

Wdr83os
type: EnsemblDatabaseReference

Wdr83os
type: EnsemblDatabaseReference

1423828_at
type: EFO_0005072
part of: A-AFFY-36

1427422_at
type: EFO_0005072
part of: A-AFFY-36

Dusp1
type: EnsemblDatabaseReference

Fasn UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.34412714964687
p value: 0.00380569946151124
refers to: Fasn
refers to: 1423828_at
t statistic: 7.14933633139564

L3hypdh UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.08676136879132
p value: 3.29766800383791E-4
refers to: 1424692_at
refers to: L3hypdh
t statistic: 11.9875511190599

1460425_at
type: EFO_0005072
part of: A-AFFY-36

(Assay) GSM457027
type: Assay
has participant: A-AFFY-36

Cdh1
type: EnsemblDatabaseReference

1700001C19Rik
type: EnsemblDatabaseReference

Cdh1
type: EnsemblDatabaseReference

Bid
type: EnsemblDatabaseReference

1421907_at
type: EFO_0005072
part of: A-AFFY-36

Med1
type: EnsemblDatabaseReference

1422449_s_at
type: EFO_0005072
part of: A-AFFY-36

(Sample) organism part/liver
type: UBERON_0002107
property type: organism part
property value: liver

Sqle UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.24812584722979
p value: 0.020028698898637
refers to: 1415993_at
refers to: Sqle
t statistic: 4.62223839012432

Cd36
type: EnsemblDatabaseReference

Cyp2c39
type: EnsemblDatabaseReference

Gm6484
type: EnsemblDatabaseReference

1428942_at
type: EFO_0005072
part of: A-AFFY-36

1423891_at
type: EFO_0005072
part of: A-AFFY-36

1426906_at
type: EFO_0005072
part of: A-AFFY-36

(Sample) genotype/wild type genotype
type: EFO_0000001
property type: genotype
property value: wild type genotype

4833420G17Rik
type: EnsemblDatabaseReference

4833420G17Rik DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.11867997812313
p value: 3.29766800383791E-4
refers to: 1419635_at
refers to: 4833420G17Rik
t statistic: -12.0045995710198

Clta DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.22561001367791
p value: 0.0493753451343626
refers to: Clta
refers to: 1434540_a_at
t statistic: -3.4295218672774

Clta
type: EnsemblDatabaseReference

H2-K1
type: EnsemblDatabaseReference

Apcs
type: EnsemblDatabaseReference

Clta
type: EnsemblDatabaseReference

4833420G17Rik DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.53071376955793
p value: 4.67354322501811E-4
refers to: 1419637_s_at
refers to: 4833420G17Rik
t statistic: -11.138625399102

Fasn
type: EnsemblDatabaseReference

(Factor value) GENOTYPE/wild type genotype
type: EFO_0000001
property type: GENOTYPE
property value: wild type genotype

A-AFFY-36
type: EFO_0000269

E-GEOD-18305
type: microarray 1colour mrna differential
RO_0002162: Mus musculus
description: The objective of the experiment is to determine the genes differentially expressed in the liver of the chromogranin A knockout mouse (Mahapatra et al., 2005). Liver from chromogranin A knockout mice (n=3) and wild-type control mice (n=3).
uses data from: http://identifiers.org/pubmed/19952279

Rbp1
type: EnsemblDatabaseReference

Pi4k2b DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.47559206450247
p value: 0.00990154223603468
refers to: Pi4k2b
refers to: 1420411_a_at
t statistic: -5.72951091044274

Mt2 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -2.7266048882973
p value: 0.0216483286881691
refers to: Mt2
refers to: 1428942_at
t statistic: -4.47564893350099

1427746_x_at
type: EFO_0005072
part of: A-AFFY-36

Gm21967
type: EnsemblDatabaseReference

Rcan2
type: EnsemblDatabaseReference

1419059_at
type: EFO_0005072
part of: A-AFFY-36

(Sample) sex/male
type: EFO_0001266
property type: sex
property value: male

Mt2
type: EnsemblDatabaseReference

Tsc22d1
type: EnsemblDatabaseReference

Lpl
type: EnsemblDatabaseReference

Lpl
type: EnsemblDatabaseReference

1415904_at
type: EFO_0005072
part of: A-AFFY-36

Rcn2
type: EnsemblDatabaseReference

Rcan2 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.3049306951418
p value: 0.00122542249809992
refers to: 1421425_a_at
refers to: Rcan2
t statistic: 9.35913995648505

1700001C19Rik DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.57306829566836
p value: 0.00217673310395172
refers to: 1700001C19Rik
refers to: 1460425_at
t statistic: -8.1307716916797

Clec2h
type: EnsemblDatabaseReference

Gm6484 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.19900593851493
p value: 0.00516829367870637
refers to: Gm6484
refers to: 1427422_at
t statistic: 6.71869071011524

Mndal
type: EnsemblDatabaseReference

Ugt2b38 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05498864255423
p value: 0.0204246433758608
refers to: Ugt2b38
refers to: 1423397_at
t statistic: -4.58786696465289

(Assay) GSM457023
type: Assay
has participant: A-AFFY-36

1417065_at
type: EFO_0005072
part of: A-AFFY-36

H2-K1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.16231050243865
p value: 0.00216579473935295
refers to: H2-K1
refers to: 1427746_x_at
t statistic: -8.18243088987779

1452501_at
type: EFO_0005072
part of: A-AFFY-36

H2-Bl
type: EnsemblDatabaseReference

1450883_a_at
type: EFO_0005072
part of: A-AFFY-36

Cyp17a1
type: EnsemblDatabaseReference

H2-Bl
type: EnsemblDatabaseReference

1417017_at
type: EFO_0005072
part of: A-AFFY-36

1419635_at
type: EFO_0005072
part of: A-AFFY-36

Sorl1
type: EnsemblDatabaseReference

L3hypdh
type: EnsemblDatabaseReference

H2-K1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.12986692832633
p value: 0.00216579473935295
refers to: H2-K1
refers to: 1425336_x_at
t statistic: -8.1679727324014

1420411_a_at
type: EFO_0005072
part of: A-AFFY-36

Neu1
type: EnsemblDatabaseReference

(Assay) GSM457024
type: Assay
has participant: A-AFFY-36

1448261_at
type: EFO_0005072
part of: A-AFFY-36

Cyp2c38
type: EnsemblDatabaseReference

1419637_s_at
type: EFO_0005072
part of: A-AFFY-36

Gstt3
type: EnsemblDatabaseReference

1419523_at
type: EFO_0005072
part of: A-AFFY-36

1424117_at
type: EFO_0005072
part of: A-AFFY-36

As3mt
type: EnsemblDatabaseReference

Ugt2b38
type: EnsemblDatabaseReference

(Assay) GSM457025
type: Assay
has participant: A-AFFY-36

Cyp17a1 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.67146676489088
p value: 0.0174840441469628
refers to: Cyp17a1
refers to: 1417017_at
t statistic: 4.87721649060922

As3mt UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.29732705029671
p value: 0.0119191933291843
refers to: As3mt
refers to: 1431980_a_at
t statistic: 5.49117937098113

1431240_at
type: EFO_0005072
part of: A-AFFY-36

(Factor value) GENOTYPE/Chromogranin A knockout
type: EFO_0000001
property type: GENOTYPE
property value: Chromogranin A knockout

1425742_a_at
type: EFO_0005072
part of: A-AFFY-36

Cyp3a13
type: EnsemblDatabaseReference

Egr1
type: EnsemblDatabaseReference

(Sample) age/12
type: EFO_0000001
property type: age
property value: 12

Cyp3a13
type: EnsemblDatabaseReference

Rbp1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.22645037624278
p value: 0.0352480091707327
refers to: 1448754_at
refers to: Rbp1
t statistic: -3.80014098772178

(Assay) GSM457022
type: Assay
has participant: A-AFFY-36

Sqle
type: EnsemblDatabaseReference

Lpl DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18944973594612
p value: 0.0406006511926345
refers to: Lpl
refers to: 1415904_at
t statistic: -3.64168774726927

Bid
type: EnsemblDatabaseReference

Med1
type: EnsemblDatabaseReference

Cyp2c39
type: EnsemblDatabaseReference

Cd36
type: EnsemblDatabaseReference

1452231_x_at
type: EFO_0005072
part of: A-AFFY-36

Gm6484
type: EnsemblDatabaseReference

Cyp2c39 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.68698404082255
p value: 0.00168275333968836
refers to: 1421363_at
refers to: Cyp2c39
t statistic: 8.70088420435057

1416831_at
type: EFO_0005072
part of: A-AFFY-36

1415993_at
type: EFO_0005072
part of: A-AFFY-36

Cyp2c38 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.33614634747125
p value: 4.67354322501811E-4
refers to: Cyp2c38
refers to: 1452501_at
t statistic: 11.0475426206172

Dusp1
type: EnsemblDatabaseReference

Fasn
type: EnsemblDatabaseReference

1700001C19Rik
type: EnsemblDatabaseReference

H2-Bl DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.67227241665887
p value: 0.0026792382110793
refers to: H2-Bl
refers to: 1450531_at
t statistic: -7.77533477936074

Clec2h DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06752108674233
p value: 0.0159999642862811
refers to: 1431240_at
refers to: Clec2h
t statistic: -5.06598679311513

(Assay) GSM457026
type: Assay
has participant: A-AFFY-36

Sorl1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07090887832949
p value: 0.00641737905370554
refers to: Sorl1
refers to: 1426258_at
t statistic: -6.4127450233393

Mus musculus
type: OBI_0100026

Rcan2
type: EnsemblDatabaseReference

1448754_at
type: EFO_0005072
part of: A-AFFY-36

Apcs DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.37028750882143
p value: 3.29766800383791E-4
refers to: 1419059_at
refers to: Apcs
t statistic: -12.8430376323982

Wdr83os DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.36669532334793
p value: 3.29766800383791E-4
refers to: Wdr83os
refers to: 1424117_at
t statistic: -11.9236141119325

1426258_at
type: EFO_0005072
part of: A-AFFY-36

4833420G17Rik
type: EnsemblDatabaseReference

Mt2
type: EnsemblDatabaseReference

Cd36 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.47394281819929
p value: 0.0221565468240435
refers to: 1450883_a_at
refers to: Cd36
t statistic: 4.43637157410679

H2-K1
type: EnsemblDatabaseReference

Apcs
type: EnsemblDatabaseReference

Clec2h
type: EnsemblDatabaseReference

Mndal
type: EnsemblDatabaseReference

Tsc22d1 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02232580149048
p value: 0.00225394582769137
refers to: 1454971_x_at
refers to: Tsc22d1
t statistic: 7.97713781750955

1431980_a_at
type: EFO_0005072
part of: A-AFFY-36

Mndal DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -2.63215681769416
p value: 2.61873447835962E-5
refers to: 1452231_x_at
refers to: Mndal
t statistic: -19.3938161753882

Rbp1
type: EnsemblDatabaseReference

1427347_s_at
type: EFO_0005072
part of: A-AFFY-36

4833420G17Rik DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.47210966747004
p value: 3.29766800383791E-4
refers to: 4833420G17Rik
refers to: 1419636_at
t statistic: -11.9863535733755

Analysis of 'Chromogranin A knockout' vs 'wild type genotype'
type: MicroarrayDifferentialExpressionAnalysis

(Sample) organism/Mus musculus
type: Mus musculus
property type: organism
property value: Mus musculus

1426607_at
type: EFO_0005072
part of: A-AFFY-36

Pi4k2b
type: EnsemblDatabaseReference

Clec2h DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.62639708730165
p value: 0.00573815231003822
refers to: Clec2h
refers to: 1424673_at
t statistic: -6.56790209800832

Dusp1 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.21164868008089
p value: 0.0207512467279358
refers to: 1448830_at
refers to: Dusp1
t statistic: 4.54184243844686

Tsc22d1 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02230760447116
p value: 0.00322561149512753
refers to: Tsc22d1
refers to: 1454758_a_at
t statistic: 7.4050957100601

Gm21967
type: EnsemblDatabaseReference

Pi4k2b
type: EnsemblDatabaseReference

Med1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18422042751857
p value: 0.02851943010845
refers to: Med1
refers to: 1421907_at
t statistic: -4.09145023658601

1434540_a_at
type: EFO_0005072
part of: A-AFFY-36

Cyp3a13 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.67918794774599
p value: 4.98896988242801E-4
refers to: Cyp3a13
refers to: 1419523_at
t statistic: -10.8620198485747

Tsc22d1 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.01847515085775
p value: 0.00397640708268022
refers to: 1425742_a_at
refers to: Tsc22d1
t statistic: 7.05867335690444

1448830_at
type: EFO_0005072
part of: A-AFFY-36

Cyp2c38
type: EnsemblDatabaseReference

1450531_at
type: EFO_0005072
part of: A-AFFY-36

1424673_at
type: EFO_0005072
part of: A-AFFY-36

(Sample) genotype/Chromogranin A knockout
type: EFO_0000001
property type: genotype
property value: Chromogranin A knockout

Tsc22d1
type: EnsemblDatabaseReference

1423166_at
type: EFO_0005072
part of: A-AFFY-36

Cdh1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.19255462373872
p value: 6.50128123174495E-4
refers to: Cdh1
refers to: 1448261_at
t statistic: -10.2034609121475

Gstt3
type: EnsemblDatabaseReference

As3mt
type: EnsemblDatabaseReference

Rcn2
type: EnsemblDatabaseReference

Mndal DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -2.46027788417757
p value: 6.50128123174495E-4
refers to: Mndal
refers to: 1426906_at
t statistic: -10.2107422209918