Nsdhl DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.34374265093108
p value: 0.0105109764787565
refers to: Nsdhl
refers to: 98631_g_at
t statistic: -6.39144977987322

Vnn1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.44032372807981
p value: 0.0478025012377808
refers to: Vnn1
refers to: 104165_at
t statistic: -3.59268904175241

Fos
type: EnsemblDatabaseReference

103460_at
type: EFO_0005072
part of: A-AFFY-6

Ier3 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.83906323350464
p value: 0.00506034919558913
refers to: Ier3
refers to: 94384_at
t statistic: 7.35759563866748

101560_at
type: EFO_0005072
part of: A-AFFY-6

A-AFFY-6
type: EFO_0000269

Gadd45b
type: EnsemblDatabaseReference

93868_at
type: EFO_0005072
part of: A-AFFY-6

102371_at
type: EFO_0005072
part of: A-AFFY-6

Gadd45b
type: EnsemblDatabaseReference

92249_g_at
type: EFO_0005072
part of: A-AFFY-6

Atf3 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02360387645904
p value: 0.00275971445395752
refers to: Atf3
refers to: 104155_f_at
t statistic: 8.22308482144782

Junb UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 2.11205146917408
p value: 2.16435145258122E-5
refers to: 102363_r_at
refers to: Junb
t statistic: 21.4550343003703

Sqle
type: EnsemblDatabaseReference

103746_at
type: EFO_0005072
part of: A-AFFY-6

Dusp1 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.13952929334038
p value: 0.00988682623942118
refers to: 104598_at
refers to: Dusp1
t statistic: 6.47488471707884

Abca1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04616806809161
p value: 0.0229174470284298
refers to: Abca1
refers to: 97198_at
t statistic: -4.93450427727267

Suz12
type: EnsemblDatabaseReference

Hspa1b UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.57619771378354
p value: 0.0427328174341023
refers to: 100946_at
refers to: Hspa1b
t statistic: 3.8358398918824

Emb DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.58654004264632
p value: 0.00275971445395752
refers to: 101560_at
refers to: Emb
t statistic: -8.33813438152163

Ier3
type: EnsemblDatabaseReference

Nsdhl DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.62206727454939
p value: 0.00328522874826332
refers to: Nsdhl
refers to: 93868_at
t statistic: -7.9414657493113

Cxcr4 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.09956164211611
p value: 0.0273223674491558
refers to: Cxcr4
refers to: 102794_at
t statistic: 4.65239673185429

Cxcr4
type: EnsemblDatabaseReference

Btg2
type: EnsemblDatabaseReference

Pik3c2g
type: EnsemblDatabaseReference

160388_at
type: EFO_0005072
part of: A-AFFY-6

Sc5d DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.19244328748283
p value: 0.00154689548566283
refers to: 102768_i_at
refers to: Sc5d
t statistic: -9.32341684057669

Cst8 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.42634667682588
p value: 0.0358214509966507
refers to: Cst8
refers to: 103245_at
t statistic: -4.17053708355732

Klf4
type: EnsemblDatabaseReference

Sc5d
type: EnsemblDatabaseReference

Egr1
type: EnsemblDatabaseReference

(Factor value) GENOTYPE/wild type genotype
type: EFO_0000001
property type: GENOTYPE
property value: wild type genotype

104745_at
type: EFO_0005072
part of: A-AFFY-6

Rfk
type: EnsemblDatabaseReference

Hspa1a UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.55819456115852
p value: 0.0451482589361727
refers to: Hspa1a
refers to: 93875_at
t statistic: 3.72190908939408

Dusp1
type: EnsemblDatabaseReference

Nr4a1
type: EnsemblDatabaseReference

Rfk DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.19509345998734
p value: 0.0402664176720822
refers to: Rfk
refers to: 97104_g_at
t statistic: -3.97180587361169

(Sample) organism/Mus musculus
type: Mus musculus
property type: organism
property value: Mus musculus

Fosb
type: EnsemblDatabaseReference

102362_i_at
type: EFO_0005072
part of: A-AFFY-6

92422_at
type: EFO_0005072
part of: A-AFFY-6

93875_at
type: EFO_0005072
part of: A-AFFY-6

94108_at
type: EFO_0005072
part of: A-AFFY-6

Cyp51
type: EnsemblDatabaseReference

Nr4a2
type: EnsemblDatabaseReference

97519_at
type: EFO_0005072
part of: A-AFFY-6

Hspa1a
type: EnsemblDatabaseReference

C3
type: EnsemblDatabaseReference

Msmo1
type: EnsemblDatabaseReference

102779_at
type: EFO_0005072
part of: A-AFFY-6

Chl1
type: EnsemblDatabaseReference

(Assay) GSM457017
type: Assay
has participant: A-AFFY-6

Msmo1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.52410783811014
p value: 0.00117665587320935
refers to: Msmo1
refers to: 160388_at
t statistic: -10.1247994305452

Nr4a2 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.95724548597768
p value: 0.0272765668827838
refers to: Nr4a2
refers to: 92248_at
t statistic: 4.70023243668124

Emb
type: EnsemblDatabaseReference

Chga
type: EnsemblDatabaseReference

Vnn1
type: EnsemblDatabaseReference

Pik3c2g DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -2.44609740640988
p value: 2.03967041805837E-4
refers to: 94108_at
refers to: Pik3c2g
t statistic: -14.239978446402

Ddit4 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17520649914744
p value: 0.019344079281219
refers to: Ddit4
refers to: 103460_at
t statistic: 5.22552042607255

98631_g_at
type: EFO_0005072
part of: A-AFFY-6

Ddit4
type: EnsemblDatabaseReference

99622_at
type: EFO_0005072
part of: A-AFFY-6

Nsdhl
type: EnsemblDatabaseReference

Suz12 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00388385149455
p value: 0.046010233943067
refers to: Suz12
refers to: 103746_at
t statistic: -3.69629734142531

(Assay) GSM457018
type: Assay
has participant: A-AFFY-6

(Sample) organism part/adrenal gland
type: CL_0000336
property type: organism part
property value: adrenal gland

Nr4a2 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.64614413941203
p value: 0.037325647044576
refers to: 92249_g_at
refers to: Nr4a2
t statistic: 4.10457382375453

100946_at
type: EFO_0005072
part of: A-AFFY-6

Junb
type: EnsemblDatabaseReference

97198_at
type: EFO_0005072
part of: A-AFFY-6

Hmgcs1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.76131942261785
p value: 6.72303530554865E-4
refers to: 94325_at
refers to: Hmgcs1
t statistic: -11.5506089541449

102768_i_at
type: EFO_0005072
part of: A-AFFY-6

Hsd17b7
type: EnsemblDatabaseReference

Spp1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21918022167979
p value: 0.0398394200022759
refers to: Spp1
refers to: 97519_at
t statistic: -3.983441749631

Hspa1b
type: EnsemblDatabaseReference

104165_at
type: EFO_0005072
part of: A-AFFY-6

Cst8
type: EnsemblDatabaseReference

Junb UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 2.78083606251132
p value: 1.65289646253354E-5
refers to: Junb
refers to: 102362_i_at
t statistic: 25.675775583127

103088_at
type: EFO_0005072
part of: A-AFFY-6

Atl2
type: EnsemblDatabaseReference

103990_at
type: EFO_0005072
part of: A-AFFY-6

Atl2
type: EnsemblDatabaseReference

Gadd45b UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 2.54318438171634
p value: 0.00215331304273203
refers to: Gadd45b
refers to: 161666_f_at
t statistic: 8.75915524437957

Hmgcs1
type: EnsemblDatabaseReference

Suz12
type: EnsemblDatabaseReference

(Sample) genotype/wild type genotype
type: EFO_0000001
property type: genotype
property value: wild type genotype

Nrep
type: EnsemblDatabaseReference

Atf3
type: EnsemblDatabaseReference

Nrep
type: EnsemblDatabaseReference

102363_r_at
type: EFO_0005072
part of: A-AFFY-6

Fos
type: EnsemblDatabaseReference

Klf4
type: EnsemblDatabaseReference

Cyp51 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.32469059214755
p value: 0.00128824744553241
refers to: Cyp51
refers to: 94916_at
t statistic: -9.85556364124695

Sc5d
type: EnsemblDatabaseReference

Egr1
type: EnsemblDatabaseReference

Gadd45b UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.70842125538074
p value: 0.00128824744553241
refers to: Gadd45b
refers to: 102779_at
t statistic: 9.81915913149196

Rfk
type: EnsemblDatabaseReference

(Assay) GSM457016
type: Assay
has participant: A-AFFY-6

Idi1
type: EnsemblDatabaseReference

Klf4 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.46022982256614
p value: 0.0139217026341282
refers to: Klf4
refers to: 99622_at
t statistic: 5.93971401675735

94325_at
type: EFO_0005072
part of: A-AFFY-6

Sqle
type: EnsemblDatabaseReference

Idi1
type: EnsemblDatabaseReference

Fosb
type: EnsemblDatabaseReference

(Sample) sex/male
type: EFO_0001266
property type: sex
property value: male

94322_at
type: EFO_0005072
part of: A-AFFY-6

Ier3
type: EnsemblDatabaseReference

94916_at
type: EFO_0005072
part of: A-AFFY-6

Atl2 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05488102972039
p value: 0.00154689548566283
refers to: Atl2
refers to: 104745_at
t statistic: -9.45345614047707

Chga DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -3.71063104947575
p value: 2.15214198593631E-5
refers to: Chga
refers to: 92422_at
t statistic: -22.6465804397585

Cxcr4
type: EnsemblDatabaseReference

Btg2
type: EnsemblDatabaseReference

Cyp51
type: EnsemblDatabaseReference

Nrep DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.50885851888621
p value: 0.0498854544893347
refers to: 160522_at
refers to: Nrep
t statistic: -3.53055383107633

C3 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.96473334191531
p value: 4.77821098945422E-5
refers to: C3
refers to: 93497_at
t statistic: -18.6078631053964

Fosb UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.09050562683357
p value: 0.0273223674491558
refers to: Fosb
refers to: 103990_at
t statistic: 4.64703333341564

Pik3c2g
type: EnsemblDatabaseReference

Nr4a1 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.03305730560363
p value: 0.0348889139595519
refers to: Nr4a1
refers to: 102371_at
t statistic: 4.2899587199597

Hsd17b7 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08926632510984
p value: 0.00154689548566283
refers to: Hsd17b7
refers to: 94177_at
t statistic: -9.40161217132045

94177_at
type: EFO_0005072
part of: A-AFFY-6

104155_f_at
type: EFO_0005072
part of: A-AFFY-6

Msmo1
type: EnsemblDatabaseReference

Dusp1
type: EnsemblDatabaseReference

Chl1
type: EnsemblDatabaseReference

Emb
type: EnsemblDatabaseReference

Chga
type: EnsemblDatabaseReference

Nr4a1
type: EnsemblDatabaseReference

Spp1
type: EnsemblDatabaseReference

160522_at
type: EFO_0005072
part of: A-AFFY-6

Spp1
type: EnsemblDatabaseReference

97104_g_at
type: EFO_0005072
part of: A-AFFY-6

Fos UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 3.20895720954033
p value: 0.0155273931286358
refers to: 160901_at
refers to: Fos
t statistic: 5.75396126031556

(Sample) genotype/Chromogranin A knockout
type: EFO_0000001
property type: genotype
property value: Chromogranin A knockout

(Assay) GSM457021
type: Assay
has participant: A-AFFY-6

Btg2 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.31776104960589
p value: 0.00117665587320935
refers to: Btg2
refers to: 101583_at
t statistic: 10.1760775875467

93497_at
type: EFO_0005072
part of: A-AFFY-6

Nsdhl
type: EnsemblDatabaseReference

Mus musculus
type: OBI_0100026

Sqle DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.35677146254567
p value: 1.09111633848384E-4
refers to: Sqle
refers to: 94322_at
t statistic: -16.191736821333

Abca1
type: EnsemblDatabaseReference

96269_at
type: EFO_0005072
part of: A-AFFY-6

101583_at
type: EFO_0005072
part of: A-AFFY-6

Abca1
type: EnsemblDatabaseReference

Nr4a2
type: EnsemblDatabaseReference

Junb
type: EnsemblDatabaseReference

160901_at
type: EFO_0005072
part of: A-AFFY-6

Hspa1a
type: EnsemblDatabaseReference

C3
type: EnsemblDatabaseReference

(Factor value) GENOTYPE/Chromogranin A knockout
type: EFO_0000001
property type: GENOTYPE
property value: Chromogranin A knockout

(Sample) age/12
type: EFO_0000001
property type: age
property value: 12

102794_at
type: EFO_0005072
part of: A-AFFY-6

Vnn1
type: EnsemblDatabaseReference

Hsd17b7
type: EnsemblDatabaseReference

Chl1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.63038275131967
p value: 0.0213283260275375
refers to: 103088_at
refers to: Chl1
t statistic: -5.04608237623349

Hspa1b
type: EnsemblDatabaseReference

104598_at
type: EFO_0005072
part of: A-AFFY-6

Ddit4
type: EnsemblDatabaseReference

Idi1 DOWN in 'Chromogranin A knockout' vs 'wild type genotype'
type: DecreasedDifferentialExpressionRatio
fold change: -1.95681926248003
p value: 0.018099639875561
refers to: 96269_at
refers to: Idi1
t statistic: -5.37038944878724

92248_at
type: EFO_0005072
part of: A-AFFY-6

103245_at
type: EFO_0005072
part of: A-AFFY-6

Cst8
type: EnsemblDatabaseReference

161666_f_at
type: EFO_0005072
part of: A-AFFY-6

94384_at
type: EFO_0005072
part of: A-AFFY-6

(Assay) GSM457019
type: Assay
has participant: A-AFFY-6

E-GEOD-18304
type: microarray 1colour mrna differential
RO_0002162: Mus musculus
description: The objective of the experiment is to determine the genes differentially expressed in the adrenal gland of the chromogranin A knockout mouse (Mahapatra et al., 2005). Adrenal glands from chromogranin A knockout mice (n=3) and wild-type control mice (n=3).
uses data from: http://identifiers.org/pubmed/19952279

Hmgcs1
type: EnsemblDatabaseReference

(Assay) GSM457020
type: Assay
has participant: A-AFFY-6

Analysis of 'Chromogranin A knockout' vs 'wild type genotype'
type: MicroarrayDifferentialExpressionAnalysis

Atf3
type: EnsemblDatabaseReference

Egr1 UP in 'Chromogranin A knockout' vs 'wild type genotype'
type: IncreasedDifferentialExpressionRatio
fold change: 1.55897824224894
p value: 1.52870587230158E-4
refers to: Egr1
refers to: 98579_at
t statistic: 15.1084567550341

98579_at
type: EFO_0005072
part of: A-AFFY-6