Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07955523121392
p value: 0.00456952010486309
refers to: Rnf213
refers to: 10383212
t statistic: -6.00019011233843

Scd2
type: EnsemblDatabaseReference

Igkv8-30
type: EnsemblDatabaseReference

Igkv12-46 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.43415732430693
p value: 0.0341974368203547
refers to: 10545215
refers to: Igkv12-46
t statistic: -4.06648069295646

Gm12250 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08241228500016
p value: 0.00111700014046832
refers to: Gm12250
refers to: 10376324
t statistic: -8.81866246293751

Cyp2c55 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.18502670963234
p value: 3.80284054122495E-4
refers to: 10463005
refers to: Cyp2c55
t statistic: 11.1734978366391

Abhd1
type: EnsemblDatabaseReference

Cdv3 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.43091275162364
p value: 2.39816218498018E-4
refers to: Cdv3
refers to: 10341801
t statistic: -9.37634967158183

Ces2b
type: EnsemblDatabaseReference

Cfi DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03069894447915
p value: 0.0225769271980565
refers to: Cfi
refers to: 10496001
t statistic: -5.32867828086642

Ifit3
type: EnsemblDatabaseReference

Maob
type: EnsemblDatabaseReference

10585749
type: EFO_0005072
part of: A-AFFY-130

Cyp2c55 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.64845276820009
p value: 0.0433624466764013
refers to: Cyp2c55
refers to: 10463005
t statistic: 4.44307611776027

Cbr3
type: EnsemblDatabaseReference

10450154
type: EFO_0005072
part of: A-AFFY-130

Oas2
type: EnsemblDatabaseReference

Ces2a
type: EnsemblDatabaseReference

10492300
type: EFO_0005072
part of: A-AFFY-130

Slc15a1
type: EnsemblDatabaseReference

10463355
type: EFO_0005072
part of: A-AFFY-130

Sp100 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07442784601823
p value: 0.00305835803751981
refers to: Sp100
refers to: 10347948
t statistic: -6.40727440261161

H2-Q6 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.22032097575969
p value: 1.30281432326446E-4
refers to: H2-Q6
refers to: 10444824
t statistic: -10.1328838316605

Iigp1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.42549614171075
p value: 2.49846632459964E-5
refers to: Iigp1
refers to: 10455961
t statistic: -12.3960357963328

Trim30a
type: EnsemblDatabaseReference

Rps3a3 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.78423137361496
p value: 1.94997325292376E-4
refers to: Rps3a3
refers to: 10407120
t statistic: 10.9401615768531

10403079
type: EFO_0005072
part of: A-AFFY-130

Ces1g UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 2.07843285730312
p value: 0.00125193733103523
refers to: Ces1g
refers to: 10580678
t statistic: 8.27375732552906

Plb1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02607006948499
p value: 0.0325467469343305
refers to: Plb1
refers to: 10520869
t statistic: 4.1242979258892

10531051
type: EFO_0005072
part of: A-AFFY-130

Abhd1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 2.05002505733372
p value: 1.02176813150584E-4
refers to: Abhd1
refers to: 10520622
t statistic: 11.5239883987785

Igkv4-62 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.16624346212705
p value: 0.0033115952133023
refers to: 10545194
refers to: Igkv4-62
t statistic: -6.32173497096832

Igj
type: EnsemblDatabaseReference

Trim30d UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.07931629088832
p value: 0.0343218637218582
refers to: Trim30d
refers to: 10566366
t statistic: 4.72983560267136

10597648
type: EFO_0005072
part of: A-AFFY-130

10538126
type: EFO_0005072
part of: A-AFFY-130

H2-Eb1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.5457573325778
p value: 1.18597941579503E-4
refers to: H2-Eb1
refers to: 10444298
t statistic: -10.3788392021408

Ces3a DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21246026481386
p value: 0.048272971479659
refers to: Ces3a
refers to: 10574598
t statistic: -4.99148064548561

Trim30a UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22548442531389
p value: 0.0052224259434968
refers to: 10566358
refers to: Trim30a
t statistic: 6.8534879127756

10497265
type: EFO_0005072
part of: A-AFFY-130

Mtif2
type: EnsemblDatabaseReference

Psph DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03356682904018
p value: 0.045997931473525
refers to: Psph
refers to: 10342868
t statistic: -4.33404699112329

10574511
type: EFO_0005072
part of: A-AFFY-130

10389207
type: EFO_0005072
part of: A-AFFY-130

Ighv1-85
type: EnsemblDatabaseReference

10531415
type: EFO_0005072
part of: A-AFFY-130

Cyp4a31 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.70788005517854
p value: 0.0259214418728879
refers to: Cyp4a31
refers to: 10507171
t statistic: 4.55406856197697

Igj DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.89620714894501
p value: 0.0123397573303426
refers to: Igj
refers to: 10531126
t statistic: -5.04749857262017

10360684
type: EFO_0005072
part of: A-AFFY-130

Mgat4c
type: EnsemblDatabaseReference

Cyp1a1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.48000104951354
p value: 0.00703063429790341
refers to: 10585749
refers to: Cyp1a1
t statistic: 5.99108859355133

10502042
type: EFO_0005072
part of: A-AFFY-130

Herc6 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -2.01134124173879
p value: 7.1038653911489E-6
refers to: 10538590
refers to: Herc6
t statistic: -16.0775338522134

Zfp791
type: EnsemblDatabaseReference

(Sample) individual/Mouse 583
type: EFO_0000001
property type: individual
property value: Mouse 583

(Assay) GSM435007
type: Assay
has participant: A-AFFY-130

(Sample) environmental history/raised in conventional environment
type: EFO_0000001
property type: environmental history
property value: raised in conventional environment

(Sample) organism part/proximal colon
type: EFO_0000001
property type: organism part
property value: proximal colon

Rtp4
type: EnsemblDatabaseReference

10557300
type: EFO_0005072
part of: A-AFFY-130

10520946
type: EFO_0005072
part of: A-AFFY-130

Oasl2 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0415375612173
p value: 0.0193366372925373
refers to: 10524621
refers to: Oasl2
t statistic: 5.24114694165307

Mlh1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -1.13476603175342
p value: 1.28135547750147E-4
refers to: 10597288
refers to: Mlh1
t statistic: -13.3090907475187

Ocm DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.87533172235013
p value: 2.85375987438431E-4
refers to: Ocm
refers to: 10535524
t statistic: -9.89880714285403

Art2b DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00225325585088
p value: 0.00314223162960757
refers to: 10565994
refers to: Art2b
t statistic: -6.36613931944193

10507163
type: EFO_0005072
part of: A-AFFY-130

10383152
type: EFO_0005072
part of: A-AFFY-130

(Assay) GSM435005
type: Assay
has participant: A-AFFY-130

Ocm
type: EnsemblDatabaseReference

10463027
type: EFO_0005072
part of: A-AFFY-130

Ifit1
type: EnsemblDatabaseReference

Nlrc5 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.27812348632845
p value: 9.65257785214085E-4
refers to: 10574149
refers to: Nlrc5
t statistic: -7.7281157115822

Acer1
type: EnsemblDatabaseReference

(Assay) GSM434946
type: Assay
has participant: A-AFFY-130

Ssr3
type: EnsemblDatabaseReference

10444291
type: EFO_0005072
part of: A-AFFY-130

Cfi
type: EnsemblDatabaseReference

Plb1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.11983582458117
p value: 0.0235220094582051
refers to: Plb1
refers to: 10520942
t statistic: 4.47140363303675

Ces1g UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.41195773129217
p value: 0.00938972636050334
refers to: Ces1g
refers to: 10580678
t statistic: 6.56055241689491

Abhd1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.87915960188616
p value: 3.80284054122495E-4
refers to: Abhd1
refers to: 10520622
t statistic: 11.1496892376799

Plb1
type: EnsemblDatabaseReference

(Assay) GSM434953
type: Assay
has participant: A-AFFY-130

10420308
type: EFO_0005072
part of: A-AFFY-130

Ugt2b5
type: EnsemblDatabaseReference

10537690
type: EFO_0005072
part of: A-AFFY-130

Alpk1
type: EnsemblDatabaseReference

Myd88 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.44572203171305
p value: 7.27242077032993E-5
refers to: 10597648
refers to: Myd88
t statistic: -15.3554090229455

Irgm1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.54798798405845
p value: 4.75479854189131E-5
refers to: Irgm1
refers to: 10385500
t statistic: -11.5776277730204

Tmem116 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22208125103758
p value: 0.00174435278785492
refers to: 10525256
refers to: Tmem116
t statistic: 9.22179274638771

H2-Q6
type: EnsemblDatabaseReference

(Assay) GSM434955
type: Assay
has participant: A-AFFY-130

H2-Ab1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.90646097570394
p value: 1.83479103587896E-5
refers to: H2-Ab1
refers to: 10444291
t statistic: -13.0181503848179

Pla2g16 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09635431477656
p value: 1.43348659119668E-4
refers to: Pla2g16
refers to: 10461093
t statistic: -9.98808748389425

E-GEOD-17438
type: microarray 1colour mrna differential
RO_0002162: Mus musculus
description: Whole-transcriptome survey of gene expression differences between germ-free (GF) and conventionally raised (CONV-R) mice. To assess the role of toll-like receptor signalling, both wild-type and Myd88 -/- mice were used. Four different tissues were harvested from 20 mice (5 WT CONV-R, 5 Myd88 -/- CONV-R, 4 WT GF, 6 Myd88 -/- GF) and expression profiles were determines using the Affymetrix Mouse Gene 1.0ST platform. 77 samples remained after quality control.
uses data from: http://identifiers.org/pubmed/22115825

Analysis of 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: MicroarrayDifferentialExpressionAnalysis

(Assay) GSM434963
type: Assay
has participant: A-AFFY-130

Acer1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1570469714793
p value: 6.55787525610312E-7
refers to: 10452202
refers to: Acer1
t statistic: 21.7166052474879

Zan
type: EnsemblDatabaseReference

Fabp4 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07525092431322
p value: 0.00769273317017006
refers to: 10497265
refers to: Fabp4
t statistic: -6.77308844969393

Gstm3 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.05483936862724
p value: 0.00279049264702526
refers to: Gstm3
refers to: 10501218
t statistic: 8.62353256890793

(Sample) individual/Mouse 595
type: EFO_0000001
property type: individual
property value: Mouse 595

Reg3b
type: EnsemblDatabaseReference

(Assay) GSM434942
type: Assay
has participant: A-AFFY-130

Emb DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03829102725802
p value: 0.00138634946920726
refers to: 10407327
refers to: Emb
t statistic: -7.21091081915473

10545220
type: EFO_0005072
part of: A-AFFY-130

Rps3a3
type: EnsemblDatabaseReference

Ifit3 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.12283135197425
p value: 0.0107006564762812
refers to: 10462618
refers to: Ifit3
t statistic: 5.86634425761016

Klrd1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.12618931143263
p value: 0.00115840284186372
refers to: Klrd1
refers to: 10542214
t statistic: -7.45128747698806

I830012O16Rik
type: EnsemblDatabaseReference

Cd8a
type: EnsemblDatabaseReference

(Assay) GSM435024
type: Assay
has participant: A-AFFY-130

10444258
type: EFO_0005072
part of: A-AFFY-130

Gzmb
type: EnsemblDatabaseReference

Ephx1
type: EnsemblDatabaseReference

Hsd17b2
type: EnsemblDatabaseReference

H2-DMb2
type: EnsemblDatabaseReference

10535524
type: EFO_0005072
part of: A-AFFY-130

Gm9078 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 2.09381684694714
p value: 9.20926760548336E-4
refers to: Gm9078
refers to: 10601088
t statistic: 9.08691756925322

(Sample) individual/Mouse 587
type: EFO_0000001
property type: individual
property value: Mouse 587

10376324
type: EFO_0005072
part of: A-AFFY-130

10412211
type: EFO_0005072
part of: A-AFFY-130

Gbf1
type: EnsemblDatabaseReference

Col6a5
type: EnsemblDatabaseReference

(Assay) GSM435012
type: Assay
has participant: A-AFFY-130

(Assay) GSM434931
type: Assay
has participant: A-AFFY-130

Slfn4
type: EnsemblDatabaseReference

10502050
type: EFO_0005072
part of: A-AFFY-130

Ifi44 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.55372648612214
p value: 0.0153819081347851
refers to: 10502791
refers to: Ifi44
t statistic: -5.82633630812193

Gpr133
type: EnsemblDatabaseReference

10383202
type: EFO_0005072
part of: A-AFFY-130

10538590
type: EFO_0005072
part of: A-AFFY-130

Zbp1
type: EnsemblDatabaseReference

Fabp4
type: EnsemblDatabaseReference

Gm9078 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.9386863492992
p value: 7.98620969649364E-6
refers to: Gm9078
refers to: 10601088
t statistic: 16.4077504390523

Ifit2
type: EnsemblDatabaseReference

Igkv12-41
type: EnsemblDatabaseReference

Slc6a19
type: EnsemblDatabaseReference

Nudt5 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14850617334847
p value: 0.00270907991968085
refers to: 10469070
refers to: Nudt5
t statistic: -6.55275681182151

(Assay) GSM435019
type: Assay
has participant: A-AFFY-130

H2-DMa
type: EnsemblDatabaseReference

Igkv6-15
type: EnsemblDatabaseReference

H2-DMa DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.60628060621504
p value: 1.55580868629908E-5
refers to: 10444229
refers to: H2-DMa
t statistic: -13.3816550952885

Copa
type: EnsemblDatabaseReference

(Assay) GSM435004
type: Assay
has participant: A-AFFY-130

10545233
type: EFO_0005072
part of: A-AFFY-130

Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.31953774330411
p value: 0.00484486516781382
refers to: Rnf213
refers to: 10383202
t statistic: -5.91615930309097

Ccl8
type: EnsemblDatabaseReference

10383192
type: EFO_0005072
part of: A-AFFY-130

(Assay) GSM434956
type: Assay
has participant: A-AFFY-130

Usp18 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.23259156314653
p value: 2.14321719991834E-4
refers to: Usp18
refers to: 10541307
t statistic: -9.51311771557775

10507171
type: EFO_0005072
part of: A-AFFY-130

Slfn4 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.10116672803919
p value: 0.0277107501035757
refers to: Slfn4
refers to: 10379636
t statistic: 4.95534469673163

10541307
type: EFO_0005072
part of: A-AFFY-130

Muc3
type: EnsemblDatabaseReference

Me1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.08104618610279
p value: 0.0353512132430084
refers to: Me1
refers to: 10595480
t statistic: 4.31366709492363

Gimap4
type: EnsemblDatabaseReference

Cyp4a10 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.30672677464451
p value: 0.0336698292653606
refers to: Cyp4a10
refers to: 10507163
t statistic: 4.36432487592068

(Sample) individual/Mouse 586
type: EFO_0000001
property type: individual
property value: Mouse 586

10338242
type: EFO_0005072
part of: A-AFFY-130

Ptprc DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02872162706197
p value: 0.00270907991968085
refers to: 10358224
refers to: Ptprc
t statistic: -6.55466726169624

Sp100
type: EnsemblDatabaseReference

10456005
type: EFO_0005072
part of: A-AFFY-130

(Assay) GSM434966
type: Assay
has participant: A-AFFY-130

Myd88 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -1.20021334935401
p value: 7.71975280129623E-4
refers to: Myd88
refers to: 10597648
t statistic: -9.81900814834145

Car3
type: EnsemblDatabaseReference

(Sample) individual/Mouse 590
type: EFO_0000001
property type: individual
property value: Mouse 590

(Factor value) ENVIRONMENTAL_HISTORY/raised in germ-free environment
type: EFO_0000001
property type: ENVIRONMENTAL_HISTORY
property value: raised in germ-free environment

Reg3b DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -2.646575321697
p value: 0.00806870787559329
refers to: Reg3b
refers to: 10539179
t statistic: -6.318535084157

Ocm DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -3.03437820588111
p value: 5.68946662563223E-7
refers to: 10535524
refers to: Ocm
t statistic: -23.8414574976586

Abhd1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.92721397578939
p value: 2.89714570752132E-4
refers to: 10520622
refers to: Abhd1
t statistic: 10.5561251845169

Rsad2
type: EnsemblDatabaseReference

10339059
type: EFO_0005072
part of: A-AFFY-130

Nlrc5
type: EnsemblDatabaseReference

Fkbp5
type: EnsemblDatabaseReference

10343889
type: EFO_0005072
part of: A-AFFY-130

Cd7
type: EnsemblDatabaseReference

Ugt2b35 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02706728003557
p value: 0.0046165757212317
refers to: 10522819
refers to: Ugt2b35
t statistic: 6.63258271341478

Ddx60
type: EnsemblDatabaseReference

Rtp4 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.11343399790714
p value: 0.0118129919566102
refers to: Rtp4
refers to: 10434778
t statistic: -6.24105779900726

Rsad2 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.72972770042283
p value: 2.3337237028238E-4
refers to: Rsad2
refers to: 10399710
t statistic: 10.6667494137649

Ces1b UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.07748039191426
p value: 2.68411402846553E-4
refers to: Ces1b
refers to: 10580622
t statistic: 9.25570560158988

Dscr3 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.30960730058499
p value: 0.0185192753779086
refers to: Dscr3
refers to: 10338242
t statistic: 5.28771393367765

Nkg7
type: EnsemblDatabaseReference

Ighv1-85 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.25343137183075
p value: 0.0021872637263368
refers to: Ighv1-85
refers to: 10403079
t statistic: -6.75709397119567

Cdv3
type: EnsemblDatabaseReference

(Sample) individual/Mouse 601
type: EFO_0000001
property type: individual
property value: Mouse 601

Igkv6-15 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -2.09378009927085
p value: 0.0341974368203547
refers to: Igkv6-15
refers to: 10545247
t statistic: -4.06733321438736

10444298
type: EFO_0005072
part of: A-AFFY-130

Cd96 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.24610507124325
p value: 0.00272463457921224
refers to: 10439744
refers to: Cd96
t statistic: -6.51489693944181

Igkv4-62
type: EnsemblDatabaseReference

10601088
type: EFO_0005072
part of: A-AFFY-130

Cyp1a1
type: EnsemblDatabaseReference

Ublcp1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.11060093505497
p value: 0.0079158795390859
refers to: Ublcp1
refers to: 10385361
t statistic: -7.00786144764002

(Assay) GSM434945
type: Assay
has participant: A-AFFY-130

Igkv4-58
type: EnsemblDatabaseReference

Cxcl10 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02395132238613
p value: 3.56526353655659E-4
refers to: 10531415
refers to: Cxcl10
t statistic: -8.9525676096955

Analysis of 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: MicroarrayDifferentialExpressionAnalysis

(Sample) individual/Mouse 593
type: EFO_0000001
property type: individual
property value: Mouse 593

Psmb9
type: EnsemblDatabaseReference

10524621
type: EFO_0005072
part of: A-AFFY-130

Tifa
type: EnsemblDatabaseReference

(Sample) genotype/Myd88 -/-
type: EFO_0000001
property type: genotype
property value: Myd88 -/-

Ifit3 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02260431588959
p value: 0.0264763971436912
refers to: Ifit3
refers to: 10462618
t statistic: -5.46681670355445

Pla2g16
type: EnsemblDatabaseReference

Cd74 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -2.21230513693078
p value: 1.07326275850002E-5
refers to: Cd74
refers to: 10456005
t statistic: -14.0385876375927

Ifi47
type: EnsemblDatabaseReference

(Sample) individual/Mouse 596
type: EFO_0000001
property type: individual
property value: Mouse 596

Ssr3
type: EnsemblDatabaseReference

Myd88 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.35761604721425
p value: 8.89875865055384E-6
refers to: Myd88
refers to: 10597648
t statistic: -15.3035268826379

Nudt5
type: EnsemblDatabaseReference

10596671
type: EFO_0005072
part of: A-AFFY-130

Cfi
type: EnsemblDatabaseReference

Myd88 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -1.23916034816783
p value: 4.90202251694851E-5
refers to: Myd88
refers to: 10597648
t statistic: -12.6871791882672

10422412
type: EFO_0005072
part of: A-AFFY-130

10520948
type: EFO_0005072
part of: A-AFFY-130

10383210
type: EFO_0005072
part of: A-AFFY-130

Gbp7 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.22738052798678
p value: 9.9941619892499E-5
refers to: Gbp7
refers to: 10496569
t statistic: -10.6169049795897

Alpk1
type: EnsemblDatabaseReference

Zan DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -1.62949456392122
p value: 1.45502088049347E-6
refers to: Zan
refers to: 10534743
t statistic: -20.0136230652714

10378068
type: EFO_0005072
part of: A-AFFY-130

10385500
type: EFO_0005072
part of: A-AFFY-130

(Sample) individual/Mouse 585
type: EFO_0000001
property type: individual
property value: Mouse 585

10607705
type: EFO_0005072
part of: A-AFFY-130

Reg4
type: EnsemblDatabaseReference

Dscr3
type: EnsemblDatabaseReference

Gm5431 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.83346261889166
p value: 1.4119977348047E-4
refers to: Gm5431
refers to: 10385504
t statistic: -10.0292592267279

Abhd1
type: EnsemblDatabaseReference

10496001
type: EFO_0005072
part of: A-AFFY-130

Art2b
type: EnsemblDatabaseReference

Usp18
type: EnsemblDatabaseReference

Reg3b
type: EnsemblDatabaseReference

Ighv1-84
type: EnsemblDatabaseReference

Rps3a3
type: EnsemblDatabaseReference

Cyp2c55
type: EnsemblDatabaseReference

Ces2b
type: EnsemblDatabaseReference

Gzma DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.77457446501726
p value: 0.0232491085462834
refers to: 10412211
refers to: Gzma
t statistic: -4.95588205142841

Ifit3
type: EnsemblDatabaseReference

Col6a5 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.27592491634685
p value: 2.18198091230045E-4
refers to: Col6a5
refers to: 10596403
t statistic: 11.3533575575696

10572130
type: EFO_0005072
part of: A-AFFY-130

Maob
type: EnsemblDatabaseReference

(Sample) individual/Mouse 597
type: EFO_0000001
property type: individual
property value: Mouse 597

Myd88 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.28489293246927
p value: 6.55787525610312E-7
refers to: Myd88
refers to: 10597648
t statistic: -21.264890935624

Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.34153045948821
p value: 0.00754016060008158
refers to: Rnf213
refers to: 10383198
t statistic: -5.48716794978627

Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.13976778001199
p value: 0.0181243075950509
refers to: 10383196
refers to: Rnf213
t statistic: -4.71318631140749

Mgat4c UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.07691811194141
p value: 0.0157801820288571
refers to: 10366144
refers to: Mgat4c
t statistic: 4.84040140938179

Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.11626541733164
p value: 0.00603950932005298
refers to: Rnf213
refers to: 10383152
t statistic: -5.72271861895738

Ptprc
type: EnsemblDatabaseReference

Abca12
type: EnsemblDatabaseReference

Slc15a1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -1.24200367456335
p value: 0.0179097194317731
refers to: 10422412
refers to: Slc15a1
t statistic: -6.10104978485123

(Assay) GSM435023
type: Assay
has participant: A-AFFY-130

(Assay) GSM434939
type: Assay
has participant: A-AFFY-130

(Assay) GSM435006
type: Assay
has participant: A-AFFY-130

Trim30d
type: EnsemblDatabaseReference

Ugt2b36 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.26905115734861
p value: 0.00387081547588492
refers to: 10531051
refers to: Ugt2b36
t statistic: 7.01404478385413

Pfkfb3
type: EnsemblDatabaseReference

10531987
type: EFO_0005072
part of: A-AFFY-130

Bcmo1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.09090617576301
p value: 0.0183265732438631
refers to: 10575750
refers to: Bcmo1
t statistic: 4.70345613053573

(Assay) GSM434944
type: Assay
has participant: A-AFFY-130

Mtif2
type: EnsemblDatabaseReference

10376326
type: EFO_0005072
part of: A-AFFY-130

Ighv1-85
type: EnsemblDatabaseReference

H2-Aa DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14884814363343
p value: 0.0079158795390859
refers to: 10450154
refers to: H2-Aa
t statistic: -7.01813860725019

Ifit2 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.13860071209115
p value: 0.0183094487254921
refers to: Ifit2
refers to: 10462613
t statistic: 5.309921528377

Xaf1
type: EnsemblDatabaseReference

Gm9078 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.80241252429822
p value: 4.44778262932393E-4
refers to: Gm9078
refers to: 10601088
t statistic: 10.8514871859473

Ces1g UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.44699190293252
p value: 3.80284054122495E-4
refers to: 10580678
refers to: Ces1g
t statistic: 11.5671964531836

(Assay) GSM434968
type: Assay
has participant: A-AFFY-130

10452202
type: EFO_0005072
part of: A-AFFY-130

10344222
type: EFO_0005072
part of: A-AFFY-130

Ccr9
type: EnsemblDatabaseReference

10341801
type: EFO_0005072
part of: A-AFFY-130

(Assay) GSM435015
type: Assay
has participant: A-AFFY-130

10580324
type: EFO_0005072
part of: A-AFFY-130

Ddx60 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.7400036318926
p value: 0.00132555200537034
refers to: Ddx60
refers to: 10571984
t statistic: 8.61843783756165

Ido1
type: EnsemblDatabaseReference

10575750
type: EFO_0005072
part of: A-AFFY-130

10492355
type: EFO_0005072
part of: A-AFFY-130

10383204
type: EFO_0005072
part of: A-AFFY-130

Car2
type: EnsemblDatabaseReference

Cyp4a31
type: EnsemblDatabaseReference

(Assay) GSM434935
type: Assay
has participant: A-AFFY-130

10450145
type: EFO_0005072
part of: A-AFFY-130

Psmb8 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.20676550789329
p value: 6.91953101149747E-4
refers to: Psmb8
refers to: 10444258
t statistic: -8.1000591561175

10379535
type: EFO_0005072
part of: A-AFFY-130

Car3
type: EnsemblDatabaseReference

(Assay) GSM434941
type: Assay
has participant: A-AFFY-130

10347948
type: EFO_0005072
part of: A-AFFY-130

Cyp1a1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21187874161345
p value: 0.0472110422618713
refers to: Cyp1a1
refers to: 10585749
t statistic: -4.19180472825094

Phf11d
type: EnsemblDatabaseReference

10590620
type: EFO_0005072
part of: A-AFFY-130

10383194
type: EFO_0005072
part of: A-AFFY-130

10580678
type: EFO_0005072
part of: A-AFFY-130

Ifit1
type: EnsemblDatabaseReference

10574598
type: EFO_0005072
part of: A-AFFY-130

(Assay) GSM434943
type: Assay
has participant: A-AFFY-130

Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.30146690175124
p value: 0.00126713094153966
refers to: Rnf213
refers to: 10383214
t statistic: -7.33626663116265

Ces1g UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.23294570733397
p value: 0.00428430035308685
refers to: Ces1g
refers to: 10580678
t statistic: 7.869987087201

10463005
type: EFO_0005072
part of: A-AFFY-130

Tmem116 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.57686024187179
p value: 2.96748191143781E-5
refers to: Tmem116
refers to: 10525256
t statistic: 13.6644325998685

Gbp7
type: EnsemblDatabaseReference

10379636
type: EFO_0005072
part of: A-AFFY-130

H2-DMb2 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.79753811605725
p value: 2.49846632459964E-5
refers to: H2-DMb2
refers to: 10444236
t statistic: -12.3981762214625

Abca12 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.27136774793844
p value: 0.023641067052473
refers to: 10355343
refers to: Abca12
t statistic: 5.27546697736411

(Assay) GSM434996
type: Assay
has participant: A-AFFY-130

10434747
type: EFO_0005072
part of: A-AFFY-130

Ces2a UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00801166153409
p value: 0.0172788917479636
refers to: Ces2a
refers to: 10574498
t statistic: 4.98567205818546

Oasl2 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.43346486818154
p value: 1.02176813150584E-4
refers to: Oasl2
refers to: 10524621
t statistic: -11.5383463342396

(Sample) individual/Mouse 600
type: EFO_0000001
property type: individual
property value: Mouse 600

Mme
type: EnsemblDatabaseReference

Scd2 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.23719096627333
p value: 0.00101373341293202
refers to: 10463355
refers to: Scd2
t statistic: -7.6317258881722

Rtp4 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.34034721527926
p value: 0.0100931094292975
refers to: 10434778
refers to: Rtp4
t statistic: -6.76737372087364

Fkbp5 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.28588226159573
p value: 0.0221004590978116
refers to: Fkbp5
refers to: 10449452
t statistic: -4.76145878826811

Maob UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.09410094126255
p value: 2.36695930308538E-4
refers to: Maob
refers to: 10603746
t statistic: 10.1685548348701

Zan
type: EnsemblDatabaseReference

(Assay) GSM435021
type: Assay
has participant: A-AFFY-130

10525989
type: EFO_0005072
part of: A-AFFY-130

(Assay) GSM435008
type: Assay
has participant: A-AFFY-130

Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.20469503509165
p value: 0.00394472581841641
refers to: Rnf213
refers to: 10383233
t statistic: -6.15408239387203

10394054
type: EFO_0005072
part of: A-AFFY-130

(Factor value) ENVIRONMENTAL_HISTORY/raised in conventional environment
type: EFO_0000001
property type: ENVIRONMENTAL_HISTORY
property value: raised in conventional environment

Sval1
type: EnsemblDatabaseReference

I830012O16Rik
type: EnsemblDatabaseReference

10597288
type: EFO_0005072
part of: A-AFFY-130

Ublcp1
type: EnsemblDatabaseReference

H2-Eb1
type: EnsemblDatabaseReference

Ephx1
type: EnsemblDatabaseReference

Hsd17b2
type: EnsemblDatabaseReference

H2-DMb2
type: EnsemblDatabaseReference

Zfp791 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.31640554672516
p value: 2.08179154456224E-4
refers to: 10580324
refers to: Zfp791
t statistic: 9.57073119559361

(Factor value) ORGANISM_PART/proximal colon
type: EFO_0000001
property type: ORGANISM_PART
property value: proximal colon

Rnf213
type: EnsemblDatabaseReference

Col6a5
type: EnsemblDatabaseReference

Ces1g
type: EnsemblDatabaseReference

10444236
type: EFO_0005072
part of: A-AFFY-130

(Assay) GSM435001
type: Assay
has participant: A-AFFY-130

(Assay) GSM435009
type: Assay
has participant: A-AFFY-130

(Factor value) ORGANISM_PART/ileum
type: UBERON_0002116
property type: ORGANISM_PART
property value: ileum

Gbp4 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10004058641639
p value: 4.99371057755529E-4
refers to: Gbp4
refers to: 10531987
t statistic: -8.52911261128808

10410530
type: EFO_0005072
part of: A-AFFY-130

Oasl2 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -2.07142800990544
p value: 3.80284054122495E-4
refers to: Oasl2
refers to: 10524621
t statistic: -12.0629475219305

Gstm3
type: EnsemblDatabaseReference

(Assay) GSM435020
type: Assay
has participant: A-AFFY-130

Ighv1-84 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07820433308062
p value: 0.00110566318908861
refers to: Ighv1-84
refers to: 10403073
t statistic: -7.49467612336113

(Assay) GSM435002
type: Assay
has participant: A-AFFY-130

Ces1b
type: EnsemblDatabaseReference

Ifit2
type: EnsemblDatabaseReference

H2-DMa
type: EnsemblDatabaseReference

(Assay) GSM434929
type: Assay
has participant: A-AFFY-130

Reg4
type: EnsemblDatabaseReference

Me1
type: EnsemblDatabaseReference

Irgm1
type: EnsemblDatabaseReference

(Assay) GSM435016
type: Assay
has participant: A-AFFY-130

10383212
type: EFO_0005072
part of: A-AFFY-130

10480035
type: EFO_0005072
part of: A-AFFY-130

Ifit1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.60932005675845
p value: 0.0016165520066602
refers to: Ifit1
refers to: 10462623
t statistic: 8.40652324887601

(Assay) GSM434949
type: Assay
has participant: A-AFFY-130

Abhd1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.77837661359948
p value: 2.34767905560082E-4
refers to: Abhd1
refers to: 10520622
t statistic: 10.9489076927057

Ccl5 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18881324685916
p value: 0.00632501359657552
refers to: Ccl5
refers to: 10389207
t statistic: -6.2311903200096

Myo9a
type: EnsemblDatabaseReference

Ccl5
type: EnsemblDatabaseReference

Emb
type: EnsemblDatabaseReference

(Sample) individual/Mouse 598
type: EFO_0000001
property type: individual
property value: Mouse 598

10399710
type: EFO_0005072
part of: A-AFFY-130

(Sample) individual/Mouse 599
type: EFO_0000001
property type: individual
property value: Mouse 599

Psmb8
type: EnsemblDatabaseReference

(Assay) GSM434950
type: Assay
has participant: A-AFFY-130

Rps3a3 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.60400162617594
p value: 4.86388078119852E-4
refers to: 10407120
refers to: Rps3a3
t statistic: 9.8626527113451

Ugt2b5 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.9384085262023
p value: 1.35704310266577E-4
refers to: 10531057
refers to: Ugt2b5
t statistic: 11.0705435460977

(Sample) individual/Mouse 584
type: EFO_0000001
property type: individual
property value: Mouse 584

Herc6 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.57112796899643
p value: 0.0159731814616917
refers to: Herc6
refers to: 10538590
t statistic: -6.12039546528366

(Assay) GSM434964
type: Assay
has participant: A-AFFY-130

Sp100
type: EnsemblDatabaseReference

10355343
type: EFO_0005072
part of: A-AFFY-130

Akr1c14
type: EnsemblDatabaseReference

10580622
type: EFO_0005072
part of: A-AFFY-130

Reg4 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.65675309744032
p value: 0.0137021766610384
refers to: 10494636
refers to: Reg4
t statistic: 5.94965648464448

Cyp1a1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.92222595271247
p value: 0.0226307443227737
refers to: Cyp1a1
refers to: 10585749
t statistic: 5.68046569444135

Ugt2b38
type: EnsemblDatabaseReference

Abhd1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.91833751340041
p value: 1.05057491443036E-5
refers to: Abhd1
refers to: 10520622
t statistic: 14.3178156144004

Car2 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04114100465696
p value: 4.76933327365176E-4
refers to: Car2
refers to: 10490923
t statistic: -8.61570625669748

(Assay) GSM434990
type: Assay
has participant: A-AFFY-130

Trim30d
type: EnsemblDatabaseReference

Cyp2c55 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17791205915004
p value: 0.0046165757212317
refers to: Cyp2c55
refers to: 10463005
t statistic: 6.61170623012446

Ifi47 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.50087802870424
p value: 7.1038653911489E-6
refers to: Ifi47
refers to: 10375515
t statistic: -16.1055707099431

Bcl2l15 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04330776940525
p value: 0.0163409807958698
refers to: Bcl2l15
refers to: 10494972
t statistic: -5.04483189321495

Fkbp5
type: EnsemblDatabaseReference

10534743
type: EFO_0005072
part of: A-AFFY-130

Car3 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09034171512663
p value: 0.0313958081849019
refers to: 10490913
refers to: Car3
t statistic: -4.90070568707492

Cxcl10
type: EnsemblDatabaseReference

Ddx60
type: EnsemblDatabaseReference

Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.30336700847646
p value: 0.00309285846554479
refers to: 10383208
refers to: Rnf213
t statistic: -6.38137657599528

Gm5431
type: EnsemblDatabaseReference

Gm9917 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -1.20047406694662
p value: 1.28135547750147E-4
refers to: 10596671
refers to: Gm9917
t statistic: -12.2832133389517

Xaf1
type: EnsemblDatabaseReference

10452854
type: EFO_0005072
part of: A-AFFY-130

Acer1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.14494541648606
p value: 5.59208649766147E-5
refers to: 10452202
refers to: Acer1
t statistic: 12.6034168563466

Ccr9
type: EnsemblDatabaseReference

10439744
type: EFO_0005072
part of: A-AFFY-130

Analysis of 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: MicroarrayDifferentialExpressionAnalysis

Cd3g
type: EnsemblDatabaseReference

Iigp1
type: EnsemblDatabaseReference

Cyp1a1
type: EnsemblDatabaseReference

Cyp4a31
type: EnsemblDatabaseReference

10496592
type: EFO_0005072
part of: A-AFFY-130

Car2
type: EnsemblDatabaseReference

Aqp8 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.67587833420657
p value: 3.01743109028991E-4
refers to: Aqp8
refers to: 10557300
t statistic: 9.76729592758492

Gzmb DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.85231189460708
p value: 8.42442598834526E-4
refers to: Gzmb
refers to: 10420308
t statistic: -7.89808336656532

Cd74
type: EnsemblDatabaseReference

(Assay) GSM434938
type: Assay
has participant: A-AFFY-130

(Sample) organism part/jejunum
type: UBERON_0002115
property type: organism part
property value: jejunum

10403073
type: EFO_0005072
part of: A-AFFY-130

10444244
type: EFO_0005072
part of: A-AFFY-130

Srd5a2
type: EnsemblDatabaseReference

Gm9078
type: EnsemblDatabaseReference

Gm9917
type: EnsemblDatabaseReference

Tifa
type: EnsemblDatabaseReference

Gimap4 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04874414414658
p value: 5.22555975783418E-4
refers to: 10538126
refers to: Gimap4
t statistic: -8.46157780186677

10467979
type: EFO_0005072
part of: A-AFFY-130

Igkv4-69
type: EnsemblDatabaseReference

Mlh1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.17540316706637
p value: 9.72146271672547E-6
refers to: Mlh1
refers to: 10597288
t statistic: -14.5676237251519

Pfkfb3 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10683550880055
p value: 0.00475109935155851
refers to: Pfkfb3
refers to: 10480035
t statistic: -5.93871478106219

10383206
type: EFO_0005072
part of: A-AFFY-130

Igkv6-13
type: EnsemblDatabaseReference

Ifi44 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -2.04538558484957
p value: 0.0118825573045749
refers to: 10502791
refers to: Ifi44
t statistic: -6.45946677046035

Ugt2b35
type: EnsemblDatabaseReference

Psmb9 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.13920094603366
p value: 6.6921817674169E-5
refers to: Psmb9
refers to: 10450145
t statistic: -11.0555820886357

Gzma DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -2.00091236360744
p value: 0.00160237287021784
refers to: Gzma
refers to: 10412211
t statistic: -7.07784857266477

Cyp2c29
type: EnsemblDatabaseReference

Cd3g DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.57464159145737
p value: 0.00179883874020127
refers to: Cd3g
refers to: 10593015
t statistic: -6.97368936000293

10462618
type: EFO_0005072
part of: A-AFFY-130

10383196
type: EFO_0005072
part of: A-AFFY-130

Nlrc5 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.36680597668028
p value: 0.0182721462734001
refers to: Nlrc5
refers to: 10574149
t statistic: -4.90891081595243

Mme
type: EnsemblDatabaseReference

Igkv6-13 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10488536112971
p value: 0.00499863006023252
refers to: 10545249
refers to: Igkv6-13
t statistic: -5.88257206156544

Oas3
type: EnsemblDatabaseReference

10340722
type: EFO_0005072
part of: A-AFFY-130

10520940
type: EFO_0005072
part of: A-AFFY-130

Mus musculus
type: OBI_0100026

10490150
type: EFO_0005072
part of: A-AFFY-130

Phf11d UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.25433874822039
p value: 0.0061836162918179
refers to: Phf11d
refers to: 10420488
t statistic: 6.62719238371746

(Assay) GSM434998
type: Assay
has participant: A-AFFY-130

Dscr3
type: EnsemblDatabaseReference

(Assay) GSM434936
type: Assay
has participant: A-AFFY-130

10358224
type: EFO_0005072
part of: A-AFFY-130

Art2b
type: EnsemblDatabaseReference

Ifit1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -2.0009720201448
p value: 1.83479103587896E-5
refers to: Ifit1
refers to: 10462623
t statistic: -13.0906000711477

Ccr9 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.11461166191732
p value: 2.05851792494674E-4
refers to: Ccr9
refers to: 10590620
t statistic: -9.62534354928805

Herc6
type: EnsemblDatabaseReference

Cyp4a10
type: EnsemblDatabaseReference

Usp18
type: EnsemblDatabaseReference

Cyp2c55
type: EnsemblDatabaseReference

Ighv1-84
type: EnsemblDatabaseReference

Analysis of 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: MicroarrayDifferentialExpressionAnalysis

Sval1
type: EnsemblDatabaseReference

Gzma
type: EnsemblDatabaseReference

Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.43227919216035
p value: 0.0044646886772485
refers to: 10383192
refers to: Rnf213
t statistic: -6.02398621901453

Col6a5 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.32249105534019
p value: 9.27435985920867E-6
refers to: 10596403
refers to: Col6a5
t statistic: 15.8781753651254

(Assay) GSM434960
type: Assay
has participant: A-AFFY-130

(Sample) individual/Mouse 589
type: EFO_0000001
property type: individual
property value: Mouse 589

Ublcp1
type: EnsemblDatabaseReference

Cyp2c29 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.99967629209567
p value: 0.0119744093871441
refers to: 10463027
refers to: Cyp2c29
t statistic: 5.36832040630119

Gbf1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.65434008575203
p value: 0.00410176479549096
refers to: 10342570
refers to: Gbf1
t statistic: 6.11233505232677

Igkv10-96
type: EnsemblDatabaseReference

Ptprc
type: EnsemblDatabaseReference

Rnf213
type: EnsemblDatabaseReference

Abca12
type: EnsemblDatabaseReference

Ces1g
type: EnsemblDatabaseReference

10383233
type: EFO_0005072
part of: A-AFFY-130

Oas1e DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.63614272907257
p value: 0.00258757076619477
refers to: Oas1e
refers to: 10533229
t statistic: -6.61202966867952

(Sample) individual/Mouse 594
type: EFO_0000001
property type: individual
property value: Mouse 594

Cyp2c29 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.94036293985649
p value: 0.00675690529002788
refers to: Cyp2c29
refers to: 10463027
t statistic: 7.21571638795936

Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01255151971687
p value: 0.00969357246887113
refers to: Rnf213
refers to: 10383194
t statistic: -5.26386734769628

Igkv8-30 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0221664581785
p value: 0.045997931473525
refers to: Igkv8-30
refers to: 10545233
t statistic: 4.30249886042983

10595480
type: EFO_0005072
part of: A-AFFY-130

10444824
type: EFO_0005072
part of: A-AFFY-130

Cyp2c66 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.07096161490322
p value: 0.00763306707404921
refers to: Cyp2c66
refers to: 10463023
t statistic: 5.82050948505706

Myd88 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.31007740239504
p value: 8.60196643817486E-6
refers to: Myd88
refers to: 10597648
t statistic: -17.4371117240024

Myd88 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.17379442196318
p value: 3.3197441810413E-6
refers to: Myd88
refers to: 10597648
t statistic: -18.1781217749623

10522819
type: EFO_0005072
part of: A-AFFY-130

(Assay) GSM435022
type: Assay
has participant: A-AFFY-130

Ces3a
type: EnsemblDatabaseReference

Aqp8
type: EnsemblDatabaseReference

10565994
type: EFO_0005072
part of: A-AFFY-130

Dlg1
type: EnsemblDatabaseReference

10462613
type: EFO_0005072
part of: A-AFFY-130

Pfkfb3
type: EnsemblDatabaseReference

10342868
type: EFO_0005072
part of: A-AFFY-130

10531057
type: EFO_0005072
part of: A-AFFY-130

Oasl2 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.49764230245398
p value: 0.0011522701737857
refers to: Oasl2
refers to: 10524621
t statistic: -8.85353703814495

Ssr3 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.31411046659702
p value: 0.0306571863620886
refers to: 10344222
refers to: Ssr3
t statistic: 4.83139903293809

10552406
type: EFO_0005072
part of: A-AFFY-130

Analysis of 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; proximal colon'
type: MicroarrayDifferentialExpressionAnalysis

(Assay) GSM434989
type: Assay
has participant: A-AFFY-130

Myd88
type: EnsemblDatabaseReference

Plb1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.08666997924
p value: 0.0250019427560168
refers to: Plb1
refers to: 10520923
t statistic: 4.413687093993

10545190
type: EFO_0005072
part of: A-AFFY-130

Tap1
type: EnsemblDatabaseReference

(Assay) GSM434932
type: Assay
has participant: A-AFFY-130

Ido1
type: EnsemblDatabaseReference

Herc6 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.277388802463
p value: 0.00350863611762689
refers to: Herc6
refers to: 10538590
t statistic: 7.45598907473916

Srd5a2 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -2.43170551098763
p value: 0.0307927158229601
refers to: Srd5a2
refers to: 10452854
t statistic: -5.44168578125122

Mlh1
type: EnsemblDatabaseReference

(Assay) GSM434952
type: Assay
has participant: A-AFFY-130

10338826
type: EFO_0005072
part of: A-AFFY-130

10383214
type: EFO_0005072
part of: A-AFFY-130

10531126
type: EFO_0005072
part of: A-AFFY-130

Gm9078 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.49721366493264
p value: 0.0319946020332841
refers to: 10601088
refers to: Gm9078
t statistic: 4.15349664230467

Tmem116
type: EnsemblDatabaseReference

Igkv12-41 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.57582055673821
p value: 1.24789034654535E-4
refers to: Igkv12-41
refers to: 10545220
t statistic: -10.2798629102787

Plb1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.14950022450195
p value: 0.0444472484332433
refers to: 10520948
refers to: Plb1
t statistic: 3.81829926905929

Bcl2l15
type: EnsemblDatabaseReference

(Assay) GSM434993
type: Assay
has participant: A-AFFY-130

Phf11d
type: EnsemblDatabaseReference

Gbp2
type: EnsemblDatabaseReference

10385361
type: EFO_0005072
part of: A-AFFY-130

Aadac
type: EnsemblDatabaseReference

Oas2 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.10961699476155
p value: 0.013479204628717
refers to: Oas2
refers to: 10533198
t statistic: 5.61180682284

Rps3a3 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.35886119131786
p value: 0.0041633089948281
refers to: Rps3a3
refers to: 10407120
t statistic: 8.03277923795516

H2-Aa DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -2.07205189614132
p value: 1.07326275850002E-5
refers to: H2-Aa
refers to: 10450154
t statistic: -14.1381065300926

Abhd1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.62542798835558
p value: 5.8683966443812E-4
refers to: Abhd1
refers to: 10520622
t statistic: 9.61968634118611

Dscr3 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.34790871022672
p value: 0.0221002375437628
refers to: 10338826
refers to: Dscr3
t statistic: -4.53217615940311

Nudt5 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06272726486703
p value: 0.0264763971436912
refers to: 10469070
refers to: Nudt5
t statistic: -5.48953153257764

10385504
type: EFO_0005072
part of: A-AFFY-130

Rtp4 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.31839995340881
p value: 6.50387610986414E-4
refers to: Rtp4
refers to: 10434778
t statistic: 9.46050374587464

(Assay) GSM434991
type: Assay
has participant: A-AFFY-130

Gm5431
type: EnsemblDatabaseReference

(Assay) GSM434937
type: Assay
has participant: A-AFFY-130

(Sample) organism part/ileum
type: UBERON_0002116
property type: organism part
property value: ileum

10436978
type: EFO_0005072
part of: A-AFFY-130

Gbp7
type: EnsemblDatabaseReference

Gm9917 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.68571881216492
p value: 2.15072395427144E-6
refers to: Gm9917
refers to: 10596671
t statistic: -19.9287797054062

Ighv1-85 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.14545099254551
p value: 0.019695336838644
refers to: Ighv1-85
refers to: 10403079
t statistic: 5.22486812310295

Nkg7 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.28925149023903
p value: 0.00208093453083457
refers to: Nkg7
refers to: 10552406
t statistic: -6.80368841497618

(Assay) GSM434997
type: Assay
has participant: A-AFFY-130

Ccl5 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.70455849709928
p value: 0.00445027034085725
refers to: Ccl5
refers to: 10389207
t statistic: -6.03181475493871

(Assay) GSM435000
type: Assay
has participant: A-AFFY-130

H2-Aa
type: EnsemblDatabaseReference

Ido1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.52610297258816
p value: 2.49846632459964E-5
refers to: Ido1
refers to: 10577655
t statistic: -12.4725981190537

Scd1
type: EnsemblDatabaseReference

(Factor value) GENOTYPE/wild type genotype
type: EFO_0000001
property type: GENOTYPE
property value: wild type genotype

10596403
type: EFO_0005072
part of: A-AFFY-130

Sval1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.01896778836154
p value: 0.0375684943351389
refers to: Sval1
refers to: 10537690
t statistic: 4.63184820423249

10461093
type: EFO_0005072
part of: A-AFFY-130

Cyp2c66 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.3472779572255
p value: 0.0363087996663077
refers to: 10463023
refers to: Cyp2c66
t statistic: 5.07841342697057

Sval1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.27076958365384
p value: 0.00744546431678683
refers to: Sval1
refers to: 10537690
t statistic: 6.04222634453103

Xaf1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05980999672921
p value: 5.60274562917117E-4
refers to: Xaf1
refers to: 10378068
t statistic: -8.37447477755291

(Sample) organism part/duodenum
type: UBERON_0002114
property type: organism part
property value: duodenum

10538993
type: EFO_0005072
part of: A-AFFY-130

H2-Eb1
type: EnsemblDatabaseReference

10539179
type: EFO_0005072
part of: A-AFFY-130

10494636
type: EFO_0005072
part of: A-AFFY-130

10462621
type: EFO_0005072
part of: A-AFFY-130

Analysis of 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: MicroarrayDifferentialExpressionAnalysis

Cyp2c66
type: EnsemblDatabaseReference

(Assay) GSM434992
type: Assay
has participant: A-AFFY-130

Zbp1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18412542662478
p value: 5.51006020255947E-5
refers to: Zbp1
refers to: 10490150
t statistic: -11.2960403422101

Cd7 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14674438827164
p value: 0.0104317716423278
refers to: Cd7
refers to: 10394054
t statistic: -5.19006874696017

Cdv3 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.25770093603617
p value: 0.00425911005360578
refers to: Cdv3
refers to: 10341801
t statistic: -6.64648389992501

10533198
type: EFO_0005072
part of: A-AFFY-130

Irgm2
type: EnsemblDatabaseReference

(Sample) individual/Mouse 592
type: EFO_0000001
property type: individual
property value: Mouse 592

Muc3 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.38526793027231
p value: 3.80284054122495E-4
refers to: Muc3
refers to: 10534684
t statistic: -11.657284023279

Gstm3
type: EnsemblDatabaseReference

Rtp4 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.63616083499529
p value: 0.00110566318908861
refers to: Rtp4
refers to: 10434778
t statistic: -7.50095029441791

Ifi44 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.85430982747306
p value: 1.89820139028634E-4
refers to: Ifi44
refers to: 10502791
t statistic: 11.0674217829114

Ces1b
type: EnsemblDatabaseReference

Cdv3 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -1.52239455852673
p value: 0.00428972203177853
refers to: Cdv3
refers to: 10341801
t statistic: -7.75488834474114

10469070
type: EFO_0005072
part of: A-AFFY-130

Ces1g UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.39448892532687
p value: 4.19589420059119E-5
refers to: Ces1g
refers to: 10580678
t statistic: 11.7735680665141

10383208
type: EFO_0005072
part of: A-AFFY-130

Me1
type: EnsemblDatabaseReference

Irgm1
type: EnsemblDatabaseReference

(Sample) individual/Mouse 602
type: EFO_0000001
property type: individual
property value: Mouse 602

A-AFFY-130
type: EFO_0000269

(Assay) GSM434961
type: Assay
has participant: A-AFFY-130

10490913
type: EFO_0005072
part of: A-AFFY-130

Herc6
type: EnsemblDatabaseReference

Apol10a DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07841193059483
p value: 3.56526353655659E-4
refers to: Apol10a
refers to: 10425037
t statistic: -8.96102598433534

Psph
type: EnsemblDatabaseReference

Igkv12-46
type: EnsemblDatabaseReference

Oas1e
type: EnsemblDatabaseReference

Adipoq DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.40845974161575
p value: 0.0108955658692355
refers to: Adipoq
refers to: 10434747
t statistic: -6.38955923325651

Myo9a
type: EnsemblDatabaseReference

10494972
type: EFO_0005072
part of: A-AFFY-130

Ccl5
type: EnsemblDatabaseReference

10383198
type: EFO_0005072
part of: A-AFFY-130

Emb
type: EnsemblDatabaseReference

10420488
type: EFO_0005072
part of: A-AFFY-130

Psmb8
type: EnsemblDatabaseReference

10534684
type: EFO_0005072
part of: A-AFFY-130

Apol10a
type: EnsemblDatabaseReference

Gbp4
type: EnsemblDatabaseReference

10520942
type: EFO_0005072
part of: A-AFFY-130

Gm12250
type: EnsemblDatabaseReference

Ddx60 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.40642902562163
p value: 8.97718392982078E-6
refers to: Ddx60
refers to: 10571984
t statistic: -15.0187239982241

S100g DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21802183254006
p value: 0.0102475656387636
refers to: 10607705
refers to: S100g
t statistic: -5.97412133603078

10344064
type: EFO_0005072
part of: A-AFFY-130

Akr1c14
type: EnsemblDatabaseReference

Ugt2b38
type: EnsemblDatabaseReference

Scd1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.75214126734129
p value: 0.00769273317017006
refers to: Scd1
refers to: 10467979
t statistic: -6.75381850528824

Cd96
type: EnsemblDatabaseReference

Bcmo1
type: EnsemblDatabaseReference

10566358
type: EFO_0005072
part of: A-AFFY-130

Adipoq
type: EnsemblDatabaseReference

Aadac DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -2.36347945969387
p value: 2.0515771589126E-6
refers to: 10492300
refers to: Aadac
t statistic: -18.7159592639035

(Assay) GSM434988
type: Assay
has participant: A-AFFY-130

10463023
type: EFO_0005072
part of: A-AFFY-130

Oasl2
type: EnsemblDatabaseReference

Klrd1
type: EnsemblDatabaseReference

10403291
type: EFO_0005072
part of: A-AFFY-130

10501218
type: EFO_0005072
part of: A-AFFY-130

10542214
type: EFO_0005072
part of: A-AFFY-130

Hsd17b2 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00572248641406
p value: 0.0170097779212886
refers to: 10575833
refers to: Hsd17b2
t statistic: 5.0138793890181

Cxcl10
type: EnsemblDatabaseReference

Analysis of 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: MicroarrayDifferentialExpressionAnalysis

Ephx1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.18541088011427
p value: 0.00599656336411037
refers to: 10360684
refers to: Ephx1
t statistic: 6.26509293973596

10366144
type: EFO_0005072
part of: A-AFFY-130

Scd2
type: EnsemblDatabaseReference

Igkv8-30
type: EnsemblDatabaseReference

Mtif2 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.13272265779073
p value: 0.00647813477412736
refers to: Mtif2
refers to: 10340722
t statistic: -5.64263264210145

(Sample) individual/Mouse 588
type: EFO_0000001
property type: individual
property value: Mouse 588

10525256
type: EFO_0005072
part of: A-AFFY-130

Cd3g
type: EnsemblDatabaseReference

Iigp1
type: EnsemblDatabaseReference

Cyp1a1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.81252683008535
p value: 0.0258814363520914
refers to: Cyp1a1
refers to: 10585749
t statistic: -4.37729549810828

Oas2
type: EnsemblDatabaseReference

Cd74
type: EnsemblDatabaseReference

Cbr3
type: EnsemblDatabaseReference

(Assay) GSM434999
type: Assay
has participant: A-AFFY-130

10520923
type: EFO_0005072
part of: A-AFFY-130

10545202
type: EFO_0005072
part of: A-AFFY-130

Ces2a
type: EnsemblDatabaseReference

Igkv4-58 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.40867651248468
p value: 0.0337137250531137
refers to: Igkv4-58
refers to: 10545202
t statistic: -4.08405657160788

Slc15a1
type: EnsemblDatabaseReference

(Assay) GSM435013
type: Assay
has participant: A-AFFY-130

Trim30a DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.37312073351176
p value: 0.0349246065424056
refers to: 10566358
refers to: Trim30a
t statistic: -5.12715300510414

Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.34299949856724
p value: 0.00463734363258033
refers to: Rnf213
refers to: 10383206
t statistic: -5.9821733322913

10407327
type: EFO_0005072
part of: A-AFFY-130

(Assay) GSM434951
type: Assay
has participant: A-AFFY-130

10531073
type: EFO_0005072
part of: A-AFFY-130

(Assay) GSM434930
type: Assay
has participant: A-AFFY-130

Tmem116
type: EnsemblDatabaseReference

Trim30a
type: EnsemblDatabaseReference

Srd5a2
type: EnsemblDatabaseReference

Gm9078
type: EnsemblDatabaseReference

Gm9917
type: EnsemblDatabaseReference

Bcl2l15
type: EnsemblDatabaseReference

Alpk1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05939517550643
p value: 0.0155170167767754
refers to: Alpk1
refers to: 10502042
t statistic: -5.12372768119687

10407120
type: EFO_0005072
part of: A-AFFY-130

Gbp2
type: EnsemblDatabaseReference

Aadac
type: EnsemblDatabaseReference

Mgat4c DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01698920747305
p value: 0.0046165757212317
refers to: Mgat4c
refers to: 10366144
t statistic: -6.61664729357799

H2-Ab1
type: EnsemblDatabaseReference

Igkv4-69
type: EnsemblDatabaseReference

10434778
type: EFO_0005072
part of: A-AFFY-130

Igj
type: EnsemblDatabaseReference

Igkv6-13
type: EnsemblDatabaseReference

Ugt2b35
type: EnsemblDatabaseReference

Ifi44
type: EnsemblDatabaseReference

Ces2b UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.19292201879312
p value: 0.0103060033820874
refers to: Ces2b
refers to: 10574511
t statistic: 5.48996610016266

Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.16975764174711
p value: 0.00819948298161273
refers to: Rnf213
refers to: 10383168
t statistic: -5.40242666727821

Mgat4c
type: EnsemblDatabaseReference

Cyp2c29
type: EnsemblDatabaseReference

Zfp791
type: EnsemblDatabaseReference

10545247
type: EFO_0005072
part of: A-AFFY-130

10533229
type: EFO_0005072
part of: A-AFFY-130

Oas3
type: EnsemblDatabaseReference

Gm12250 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -2.16002602766729
p value: 1.05385777668867E-4
refers to: Gm12250
refers to: 10376324
t statistic: -10.5282696594369

10545215
type: EFO_0005072
part of: A-AFFY-130

10496569
type: EFO_0005072
part of: A-AFFY-130

Cd8a DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.20985369562597
p value: 6.39985839307921E-4
refers to: Cd8a
refers to: 10538993
t statistic: -8.18110605999288

Rtp4
type: EnsemblDatabaseReference

(Assay) GSM434967
type: Assay
has participant: A-AFFY-130

Gm5431 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.19845400557463
p value: 0.00425911005360578
refers to: Gm5431
refers to: 10385504
t statistic: -6.70713924549133

Cyp4a10
type: EnsemblDatabaseReference

(Assay) GSM435011
type: Assay
has participant: A-AFFY-130

Gzma
type: EnsemblDatabaseReference

10545173
type: EFO_0005072
part of: A-AFFY-130

Lpl
type: EnsemblDatabaseReference

10566366
type: EFO_0005072
part of: A-AFFY-130

Acer1
type: EnsemblDatabaseReference

(Assay) GSM434948
type: Assay
has participant: A-AFFY-130

Oas3 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.09512948666523
p value: 0.00368432082909651
refers to: 10533213
refers to: Oas3
t statistic: -8.24696754547128

(Assay) GSM434933
type: Assay
has participant: A-AFFY-130

Igkv10-96
type: EnsemblDatabaseReference

Irgm2 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -2.22170218426975
p value: 8.97718392982078E-6
refers to: 10376326
refers to: Irgm2
t statistic: -14.8446856963295

Mlh1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07446405164814
p value: 2.54828205529099E-4
refers to: 10597288
refers to: Mlh1
t statistic: -10.6145410543762

10577655
type: EFO_0005072
part of: A-AFFY-130

10342570
type: EFO_0005072
part of: A-AFFY-130

S100g
type: EnsemblDatabaseReference

Ugt2b5
type: EnsemblDatabaseReference

10375515
type: EFO_0005072
part of: A-AFFY-130

(Assay) GSM434965
type: Assay
has participant: A-AFFY-130

Ugt2b36
type: EnsemblDatabaseReference

Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3160824224391
p value: 0.0044646886772485
refers to: 10383200
refers to: Rnf213
t statistic: -6.02229530642421

Ces3a
type: EnsemblDatabaseReference

Aqp8
type: EnsemblDatabaseReference

Fkbp5 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.26236964486643
p value: 0.0159731814616917
refers to: 10449452
refers to: Fkbp5
t statistic: -6.10985992804867

10574149
type: EFO_0005072
part of: A-AFFY-130

Dlg1
type: EnsemblDatabaseReference

Ccl8 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.21020358378499
p value: 0.00315035267329846
refers to: Ccl8
refers to: 10379535
t statistic: 7.58424354606901

Gbp2 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04536552625462
p value: 0.00127818134587062
refers to: Gbp2
refers to: 10496592
t statistic: -7.3199383082194

10462623
type: EFO_0005072
part of: A-AFFY-130

Ocm DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -3.22412809093449
p value: 2.73094534007935E-4
refers to: Ocm
refers to: 10535524
t statistic: -12.9054782468927

Psph
type: EnsemblDatabaseReference

(Assay) GSM435003
type: Assay
has participant: A-AFFY-130

Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3472078999861
p value: 0.00463734363258033
refers to: Rnf213
refers to: 10383204
t statistic: -5.97931478221557

Dscr3 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.26259727344245
p value: 0.00138634946920726
refers to: Dscr3
refers to: 10343889
t statistic: -7.22850909077035

Trim30a DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02200510172053
p value: 1.24789034654535E-4
refers to: 10566358
refers to: Trim30a
t statistic: -10.2031282295715

Myd88
type: EnsemblDatabaseReference

(Assay) GSM435018
type: Assay
has participant: A-AFFY-130

(Assay) GSM435017
type: Assay
has participant: A-AFFY-130

Rps3a3 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.60381627458156
p value: 0.00387081547588492
refers to: 10407120
refers to: Rps3a3
t statistic: 6.98669228318395

Tap1
type: EnsemblDatabaseReference

Gm9078 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.98578628080494
p value: 1.57421516525541E-5
refers to: Gm9078
refers to: 10601088
t statistic: 15.466746356531

Cd8a
type: EnsemblDatabaseReference

Gpr133 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17016050601439
p value: 1.67129712929832E-4
refers to: Gpr133
refers to: 10525989
t statistic: 10.7268234264672

10520622
type: EFO_0005072
part of: A-AFFY-130

(Sample) individual/Mouse 591
type: EFO_0000001
property type: individual
property value: Mouse 591

Igkv4-69 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.55067089907946
p value: 0.0438989299850131
refers to: Igkv4-69
refers to: 10545190
t statistic: -3.82829920124122

Muc3 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3269890647736
p value: 1.70054296025709E-4
refers to: Muc3
refers to: 10534684
t statistic: -10.5998139621166

Plb1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02502805631263
p value: 0.0319946020332841
refers to: Plb1
refers to: 10520946
t statistic: 4.15830389318893

Reg3b DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.79618208769286
p value: 0.00125193733103523
refers to: 10539179
refers to: Reg3b
t statistic: -8.24189774194183

Mlh1
type: EnsemblDatabaseReference

Igkv10-96 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -2.37536826176551
p value: 0.0135116940002694
refers to: Igkv10-96
refers to: 10545173
t statistic: -4.97045094411506

10495967
type: EFO_0005072
part of: A-AFFY-130

Lpl DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03274873127851
p value: 0.0375684943351389
refers to: Lpl
refers to: 10572130
t statistic: -4.68728158009234

10502791
type: EFO_0005072
part of: A-AFFY-130

Gbf1
type: EnsemblDatabaseReference

Abhd1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4019787391931
p value: 0.00428972203177853
refers to: Abhd1
refers to: 10520622
t statistic: 7.68758125067126

Myo9a UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.06222500828209
p value: 0.045997931473525
refers to: 10585976
refers to: Myo9a
t statistic: 4.36295259907133

Gzmb DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.19740024861307
p value: 0.0266351611183442
refers to: Gzmb
refers to: 10420308
t statistic: -4.83016555058153

Gm9078 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.60165579406963
p value: 0.017563177177067
refers to: Gm9078
refers to: 10601088
t statistic: 5.24604251550638

Plb1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.15488253208815
p value: 0.0089624266182536
refers to: 10520940
refers to: Plb1
t statistic: 5.32361691916059

Oasl2
type: EnsemblDatabaseReference

10455961
type: EFO_0005072
part of: A-AFFY-130

10593015
type: EFO_0005072
part of: A-AFFY-130

Scd1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.42910168822478
p value: 0.00279049264702526
refers to: Scd1
refers to: 10467979
t statistic: -8.60848312947414

Oas3 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.16277755711673
p value: 8.36511047320751E-4
refers to: Oas3
refers to: 10533213
t statistic: -7.92658710623996

Zbp1
type: EnsemblDatabaseReference

Igkv12-41
type: EnsemblDatabaseReference

Fabp4
type: EnsemblDatabaseReference

Slc6a19
type: EnsemblDatabaseReference

10383168
type: EFO_0005072
part of: A-AFFY-130

Mme UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 2.9654426742392
p value: 4.29032531598781E-6
refers to: 10492355
refers to: Mme
t statistic: 17.0673512986722

10425037
type: EFO_0005072
part of: A-AFFY-130

Igkv6-15
type: EnsemblDatabaseReference

Copa
type: EnsemblDatabaseReference

(Assay) GSM434934
type: Assay
has participant: A-AFFY-130

I830012O16Rik UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.14681825369637
p value: 0.0349969276749249
refers to: I830012O16Rik
refers to: 10462621
t statistic: 4.70736367872318

Ccl8
type: EnsemblDatabaseReference

Tap1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.33660309845914
p value: 2.05851792494674E-4
refers to: Tap1
refers to: 10444244
t statistic: -9.6049404600454

10444229
type: EFO_0005072
part of: A-AFFY-130

Ugt2b38 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.17553487608941
p value: 0.0158279035256012
refers to: Ugt2b38
refers to: 10531073
t statistic: 5.09497038444667

Tmem116 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.46652866164957
p value: 4.12799409909879E-4
refers to: 10525256
refers to: Tmem116
t statistic: 10.1052654807329

Gimap4
type: EnsemblDatabaseReference

Muc3
type: EnsemblDatabaseReference

H2-Aa
type: EnsemblDatabaseReference

Rnf213 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02837844062366
p value: 0.0108557652470785
refers to: 10383210
refers to: Rnf213
t statistic: -5.15962290392956

Scd1
type: EnsemblDatabaseReference

10574498
type: EFO_0005072
part of: A-AFFY-130

(Assay) GSM434947
type: Assay
has participant: A-AFFY-130

(Factor value) GENOTYPE/Myd88 -/-
type: EFO_0000001
property type: GENOTYPE
property value: Myd88 -/-

Tifa DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1750649513609
p value: 0.00696839942388213
refers to: 10495967
refers to: Tifa
t statistic: -6.0534204325461

10449452
type: EFO_0005072
part of: A-AFFY-130

(Assay) GSM434995
type: Assay
has participant: A-AFFY-130

(Assay) GSM435010
type: Assay
has participant: A-AFFY-130

(Sample) organism/Mus musculus
type: Mus musculus
property type: organism
property value: Mus musculus

Oasl2 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -2.17531313045323
p value: 5.92882368515635E-4
refers to: Oasl2
refers to: 10524621
t statistic: -8.28797765584363

Ocm
type: EnsemblDatabaseReference

Slc6a19 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -1.77402165313348
p value: 0.00104621751607599
refers to: 10410530
refers to: Slc6a19
t statistic: -9.3557203250738

H2-Ab1
type: EnsemblDatabaseReference

Rsad2
type: EnsemblDatabaseReference

(Assay) GSM434957
type: Assay
has participant: A-AFFY-130

Nlrc5
type: EnsemblDatabaseReference

Rnf213 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1497183681328
p value: 0.0061836162918179
refers to: Rnf213
refers to: 10383208
t statistic: 6.67765004852064

Cd7
type: EnsemblDatabaseReference

10585976
type: EFO_0005072
part of: A-AFFY-130

Cyp2c66
type: EnsemblDatabaseReference

Copa DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; proximal colon'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10307286331097
p value: 0.045997931473525
refers to: Copa
refers to: 10339059
t statistic: -4.3526447041792

Ifi44
type: EnsemblDatabaseReference

Cbr3 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.67450947582785
p value: 0.00703063429790341
refers to: 10436978
refers to: Cbr3
t statistic: 5.96871895587094

(Factor value) ORGANISM_PART/duodenum
type: UBERON_0002114
property type: ORGANISM_PART
property value: duodenum

Plb1
type: EnsemblDatabaseReference

(Assay) GSM435014
type: Assay
has participant: A-AFFY-130

Irgm2
type: EnsemblDatabaseReference

(Assay) GSM434940
type: Assay
has participant: A-AFFY-130

Nkg7
type: EnsemblDatabaseReference

(Assay) GSM434994
type: Assay
has participant: A-AFFY-130

10520869
type: EFO_0005072
part of: A-AFFY-130

Cdv3
type: EnsemblDatabaseReference

H2-Q6
type: EnsemblDatabaseReference

(Assay) GSM434959
type: Assay
has participant: A-AFFY-130

10545194
type: EFO_0005072
part of: A-AFFY-130

Igkv4-62
type: EnsemblDatabaseReference

Gm9917 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.86714528009208
p value: 2.10668998174577E-6
refers to: 10596671
refers to: Gm9917
t statistic: -20.2428247534398

Igkv4-58
type: EnsemblDatabaseReference

Akr1c14 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2923490588012
p value: 5.77633448989596E-4
refers to: Akr1c14
refers to: 10403291
t statistic: 8.32265605672719

(Assay) GSM434958
type: Assay
has participant: A-AFFY-130

Zfp791 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.79082863702844
p value: 3.27489161382451E-4
refers to: Zfp791
refers to: 10580324
t statistic: 10.2155696787079

Igkv12-46
type: EnsemblDatabaseReference

Oas1e
type: EnsemblDatabaseReference

10490923
type: EFO_0005072
part of: A-AFFY-130

(Sample) genotype/wild type genotype
type: EFO_0000001
property type: genotype
property value: wild type genotype

Psmb9
type: EnsemblDatabaseReference

Lpl
type: EnsemblDatabaseReference

10545249
type: EFO_0005072
part of: A-AFFY-130

Alpk1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.23969171017789
p value: 0.0046165757212317
refers to: 10502050
refers to: Alpk1
t statistic: -6.6935646935078

Pla2g16
type: EnsemblDatabaseReference

Ifi47
type: EnsemblDatabaseReference

Gzmb
type: EnsemblDatabaseReference

10383200
type: EFO_0005072
part of: A-AFFY-130

Apol10a
type: EnsemblDatabaseReference

Gbp4
type: EnsemblDatabaseReference

Nudt5
type: EnsemblDatabaseReference

Gm12250
type: EnsemblDatabaseReference

10405753
type: EFO_0005072
part of: A-AFFY-130

(Factor value) ORGANISM_PART/jejunum
type: UBERON_0002115
property type: ORGANISM_PART
property value: jejunum

10603746
type: EFO_0005072
part of: A-AFFY-130

(Assay) GSM434954
type: Assay
has participant: A-AFFY-130

S100g
type: EnsemblDatabaseReference

10533213
type: EFO_0005072
part of: A-AFFY-130

Cyp1a1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; ileum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.52977473025883
p value: 0.0135570231848627
refers to: Cyp1a1
refers to: 10585749
t statistic: 5.97607845288613

Ugt2b36
type: EnsemblDatabaseReference

Cd96
type: EnsemblDatabaseReference

Bcmo1
type: EnsemblDatabaseReference

(Assay) GSM434962
type: Assay
has participant: A-AFFY-130

10571984
type: EFO_0005072
part of: A-AFFY-130

10575833
type: EFO_0005072
part of: A-AFFY-130

Slfn4
type: EnsemblDatabaseReference

Adipoq
type: EnsemblDatabaseReference

Klrd1
type: EnsemblDatabaseReference

Gpr133
type: EnsemblDatabaseReference

Me1 UP in 'Myd88 -/-' vs 'wild type genotype' in 'raised in conventional environment; duodenum'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22202647820425
p value: 0.025318336000249
refers to: 10405753
refers to: Me1
t statistic: 4.62660089052269

Dlg1 DOWN in 'Myd88 -/-' vs 'wild type genotype' in 'raised in germ-free environment; jejunum'
type: DecreasedDifferentialExpressionRatio
fold change: -1.10163505079236
p value: 0.0378160677991135
refers to: Dlg1
refers to: 10344064
t statistic: -3.96345656987558

(Sample) environmental history/raised in germ-free environment
type: EFO_0000001
property type: environmental history
property value: raised in germ-free environment