1427660_x_at
type: EFO_0005072
part of: A-AFFY-45

Klk1b5
type: EnsemblDatabaseReference

Col1a1
type: EnsemblDatabaseReference

Igha
type: EnsemblDatabaseReference

Analysis of 'ERRa knock out' vs 'wild type'
type: MicroarrayDifferentialExpressionAnalysis

Cyp2d9 UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.36181733333333
p value: 0.00124328202845227
refers to: Cyp2d9
refers to: 1419349_a_at
t statistic: 12.1459610225481

1452417_x_at
type: EFO_0005072
part of: A-AFFY-45

(Assay) GSM417402
type: Assay
has participant: A-AFFY-45

Cyp2d12
type: EnsemblDatabaseReference

Igkc UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.2908391
p value: 0.0154326039200704
refers to: Igkc
refers to: 1427660_x_at
t statistic: 5.62109585080392

Cyp2d9
type: EnsemblDatabaseReference

Azgp1
type: EnsemblDatabaseReference

Top2a
type: EnsemblDatabaseReference

(Assay) GSM417399
type: Assay
has participant: A-AFFY-45

Igj
type: EnsemblDatabaseReference

Cyp2f2
type: EnsemblDatabaseReference

Atp4a
type: EnsemblDatabaseReference

(Factor value) GENOTYPE/ERRa knock out
type: EFO_0000001
property type: GENOTYPE
property value: ERRa knock out

Igj UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.23456723333333
p value: 0.0267448434312209
refers to: Igj
refers to: 1424305_at
t statistic: 4.42863107853051

1426263_at
type: EFO_0005072
part of: A-AFFY-45

Unc13b
type: EnsemblDatabaseReference

Col1a1 DOWN in 'ERRa knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01133476666667
p value: 0.016199814783675
refers to: 1423669_at
refers to: Col1a1
t statistic: -5.44548136921716

(Assay) GSM417400
type: Assay
has participant: A-AFFY-45

1449218_at
type: EFO_0005072
part of: A-AFFY-45

Cadm4 UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2873481
p value: 6.13593575379468E-4
refers to: Cadm4
refers to: 1426263_at
t statistic: 14.8748047955946

Nefl
type: EnsemblDatabaseReference

Car3 UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.173702
p value: 0.001729258717763
refers to: 1449434_at
refers to: Car3
t statistic: 11.0929393048024

Scd1
type: EnsemblDatabaseReference

1425763_x_at
type: EFO_0005072
part of: A-AFFY-45

Unc13b
type: EnsemblDatabaseReference

(Sample) genotype/wild type genotype
type: EFO_0000001
property type: genotype
property value: wild type genotype

Neurog2 UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.30306993333333
p value: 6.13593575379468E-4
refers to: Neurog2
refers to: 1422839_at
t statistic: 15.1441464573286

1424305_at
type: EFO_0005072
part of: A-AFFY-45

1448314_at
type: EFO_0005072
part of: A-AFFY-45

Igkc UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.54561883333334
p value: 0.0104140995711609
refers to: 1452417_x_at
refers to: Igkc
t statistic: 6.34720149692427

(Sample) sex/male
type: EFO_0001266
property type: sex
property value: male

Cdk1
type: EnsemblDatabaseReference

Cadm4
type: EnsemblDatabaseReference

Igkc
type: EnsemblDatabaseReference

Col3a1
type: EnsemblDatabaseReference

Cyp2d12 UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4620278
p value: 0.00736204887189714
refers to: Cyp2d12
refers to: 1435853_at
t statistic: 7.23766767911636

Igkc UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.11152743333333
p value: 0.0241368013795508
refers to: 1452463_x_at
refers to: Igkc
t statistic: 4.61110294250155

(Assay) GSM417401
type: Assay
has participant: A-AFFY-45

1421653_a_at
type: EFO_0005072
part of: A-AFFY-45

1429381_x_at
type: EFO_0005072
part of: A-AFFY-45

1417757_at
type: EFO_0005072
part of: A-AFFY-45

Unc13b UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.34394563333333
p value: 8.06293938313739E-4
refers to: 1417757_at
refers to: Unc13b
t statistic: 13.4102324020458

Apoe
type: EnsemblDatabaseReference

Col1a1
type: EnsemblDatabaseReference

1417776_at
type: EFO_0005072
part of: A-AFFY-45

1460652_at
type: EFO_0005072
part of: A-AFFY-45

(Factor value) GENOTYPE/wild type genotype
type: EFO_0000001
property type: GENOTYPE
property value: wild type genotype

Igha
type: EnsemblDatabaseReference

Esrra DOWN in 'ERRa knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.92765953333333
p value: 1.64983284242881E-6
refers to: Esrra
refers to: 1460652_at
t statistic: -37.3817278141095

Cdk1 DOWN in 'ERRa knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00701176666667
p value: 0.0125675661775974
refers to: Cdk1
refers to: 1448314_at
t statistic: -5.98294141705858

Esrra
type: EnsemblDatabaseReference

Mus musculus
type: OBI_0100026

(Assay) GSM417403
type: Assay
has participant: A-AFFY-45

Cyp2f2 UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.5367893
p value: 0.0164942606140751
refers to: Cyp2f2
refers to: 1448792_a_at
t statistic: 5.40473361449745

Apoe UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.10490033333334
p value: 0.00945049137989442
refers to: 1432466_a_at
refers to: Apoe
t statistic: 6.64960636429761

Dbp UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.11935733333333
p value: 0.00253771630898322
refers to: Dbp
refers to: 1438211_s_at
t statistic: 10.2904537207488

1418174_at
type: EFO_0005072
part of: A-AFFY-45

1452463_x_at
type: EFO_0005072
part of: A-AFFY-45

Igj
type: EnsemblDatabaseReference

Klk1b5 DOWN in 'ERRa knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01314313333333
p value: 0.00295944769353348
refers to: Klk1b5
refers to: 1449313_at
t statistic: -9.52689800571716

Col5a2
type: EnsemblDatabaseReference

1435853_at
type: EFO_0005072
part of: A-AFFY-45

Egr1
type: EnsemblDatabaseReference

1427455_x_at
type: EFO_0005072
part of: A-AFFY-45

Neurog2
type: EnsemblDatabaseReference

(Assay) GSM417404
type: Assay
has participant: A-AFFY-45

(Sample) organism part/kidney
type: UBERON_0002113
property type: organism part
property value: kidney

(Sample) organism/Mus musculus
type: Mus musculus
property type: organism
property value: Mus musculus

1427883_a_at
type: EFO_0005072
part of: A-AFFY-45

1422437_at
type: EFO_0005072
part of: A-AFFY-45

Col3a1 DOWN in 'ERRa knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.187233
p value: 0.00295944769353348
refers to: Col3a1
refers to: 1427883_a_at
t statistic: -9.55389379577192

(Sample) age/2 to 3
type: EFO_0000001
property type: age
property value: 2 to 3

Scd1
type: EnsemblDatabaseReference

Neurog2
type: EnsemblDatabaseReference

E-GEOD-16623
type: microarray 1colour mrna differential
RO_0002162: Mus musculus
description: Estrogen-related receptor (ERR) alpha is an orphan nuclear receptor highly expressed in the kidneys. ERRalpha is implicated in renal sodium and potassium homeostasis and blood pressure regulation. We used microarray analysis to identify differentially expressed genes in ERR alpha knockout mice kidneys versus wild-type. The results provide insight on the roles of ERRalpha in the kidney. Three biological replicates of WT and ERRaKO were performed, for a total of 6 samples. 2-3 month old males of each genotype were used.
uses data from: http://identifiers.org/pubmed/19901197

Car3 UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.37764733333333
p value: 0.00141766575713402
refers to: 1460256_at
refers to: Car3
t statistic: 11.5748359304927

Cox8b
type: EnsemblDatabaseReference

1460256_at
type: EFO_0005072
part of: A-AFFY-45

1421286_a_at
type: EFO_0005072
part of: A-AFFY-45

Col3a1
type: EnsemblDatabaseReference

1432466_a_at
type: EFO_0005072
part of: A-AFFY-45

Apoe
type: EnsemblDatabaseReference

1422839_at
type: EFO_0005072
part of: A-AFFY-45

Dbp
type: EnsemblDatabaseReference

Egr1 UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00462076666667
p value: 0.00726993081502499
refers to: Egr1
refers to: 1417065_at
t statistic: 7.29727303449194

Per2
type: EnsemblDatabaseReference

1454672_at
type: EFO_0005072
part of: A-AFFY-45

Igha UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.89602976666667
p value: 0.0290840183018871
refers to: 1429381_x_at
refers to: Igha
t statistic: 4.25858333604324

Per2 UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.04769713333333
p value: 0.00498130937385592
refers to: Per2
refers to: 1417602_at
t statistic: 8.27387103585545

Esrra
type: EnsemblDatabaseReference

Dbp
type: EnsemblDatabaseReference

Col5a2 DOWN in 'ERRa knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.23045546666667
p value: 8.06293938313739E-4
refers to: Col5a2
refers to: 1450625_at
t statistic: -13.4724183445037

Nefl UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.35615116666667
p value: 0.00753997525970087
refers to: 1454672_at
refers to: Nefl
t statistic: 7.11332924815976

Igkc UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.27397596666667
p value: 0.0185348413176437
refers to: Igkc
refers to: 1427455_x_at
t statistic: 5.11508623986501

Klk1b5
type: EnsemblDatabaseReference

1449313_at
type: EFO_0005072
part of: A-AFFY-45

1449434_at
type: EFO_0005072
part of: A-AFFY-45

1448792_a_at
type: EFO_0005072
part of: A-AFFY-45

Car3
type: EnsemblDatabaseReference

1454694_a_at
type: EFO_0005072
part of: A-AFFY-45

Col5a2
type: EnsemblDatabaseReference

1417602_at
type: EFO_0005072
part of: A-AFFY-45

Cyp2d12
type: EnsemblDatabaseReference

Igha UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.39092453333334
p value: 0.0246566075953737
refers to: 1425763_x_at
refers to: Igha
t statistic: 4.56642951269656

Egr1
type: EnsemblDatabaseReference

Cyp2d9
type: EnsemblDatabaseReference

Car3
type: EnsemblDatabaseReference

Scd1 UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0825756
p value: 0.015219922670212
refers to: Scd1
refers to: 1415965_at
t statistic: 5.67359035122425

1450625_at
type: EFO_0005072
part of: A-AFFY-45

Azgp1
type: EnsemblDatabaseReference

Top2a
type: EnsemblDatabaseReference

1423669_at
type: EFO_0005072
part of: A-AFFY-45

1418100_at
type: EFO_0005072
part of: A-AFFY-45

(Sample) genotype/ERRa knock out
type: EFO_0000001
property type: genotype
property value: ERRa knock out

Igha UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.38074476666667
p value: 0.0221721169069328
refers to: 1421653_a_at
refers to: Igha
t statistic: 4.75130317470124

1415965_at
type: EFO_0005072
part of: A-AFFY-45

1419349_a_at
type: EFO_0005072
part of: A-AFFY-45

Cyp2f2
type: EnsemblDatabaseReference

Atp4a
type: EnsemblDatabaseReference

Cox8b
type: EnsemblDatabaseReference

Top2a DOWN in 'ERRa knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.261834
p value: 0.00712969078500947
refers to: Top2a
refers to: 1454694_a_at
t statistic: -7.58663870691342

Atp4a UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.52811843333333
p value: 8.85435833256505E-5
refers to: 1421286_a_at
refers to: Atp4a
t statistic: 20.7849792927527

Dbp UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.20800933333333
p value: 0.00440190805401801
refers to: Dbp
refers to: 1418174_at
t statistic: 8.4717101704575

Nefl
type: EnsemblDatabaseReference

1438211_s_at
type: EFO_0005072
part of: A-AFFY-45

1417065_at
type: EFO_0005072
part of: A-AFFY-45

Chd3os
type: EnsemblDatabaseReference

Chd3os UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.07109926666667
p value: 0.00802158204862578
refers to: Chd3os
refers to: 1418100_at
t statistic: 6.96928800779845

Col5a2 DOWN in 'ERRa knock out' vs 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1506751
p value: 0.00124328202845227
refers to: Col5a2
refers to: 1422437_at
t statistic: -12.0134962344684

Azgp1 UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.131382
p value: 8.68437780924983E-4
refers to: 1417776_at
refers to: Azgp1
t statistic: 13.0070689484274

Per2
type: EnsemblDatabaseReference

Igkc
type: EnsemblDatabaseReference

Cadm4
type: EnsemblDatabaseReference

Cdk1
type: EnsemblDatabaseReference

Chd3os
type: EnsemblDatabaseReference

A-AFFY-45
type: EFO_0000269

Cox8b UP in 'ERRa knock out' vs 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.06007976666667
p value: 0.00672152700791043
refers to: Cox8b
refers to: 1449218_at
t statistic: 7.77104142961272