265656_at
type: EFO_0005072
part of: A-AFFY-2

UNE8 UP in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: IncreasedDifferentialExpressionRatio
fold change: 1.04491819962815
p value: 0.00147765048765348
refers to: UNE8
refers to: 258890_at
t statistic: 8.26626445188282

ATEXT4
type: EnsemblDatabaseReference

PNP-A
type: EnsemblDatabaseReference

GH3.3
type: EnsemblDatabaseReference

258100_at
type: EFO_0005072
part of: A-AFFY-2

AT4G16260 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -2.36960946914282
p value: 8.05608991301903E-4
refers to: 245393_at
refers to: AT4G16260
t statistic: -9.23842665804974

AT3G05730
type: EnsemblDatabaseReference

LAL5
type: EnsemblDatabaseReference

AT2G34810
type: EnsemblDatabaseReference

ATCSLA01 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.31359246106342
p value: 0.0352461436298608
refers to: 245465_at
refers to: ATCSLA01
t statistic: -4.16459518916272

ATSDI1
type: EnsemblDatabaseReference

(Factor value) GENOTYPE/wild type genotype
type: EFO_0000001
property type: GENOTYPE
property value: wild type genotype

AT4G11190 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05556876514706
p value: 0.015655595589111
refers to: 254907_at
refers to: AT4G11190
t statistic: -5.03053467210808

HSPRO2
type: EnsemblDatabaseReference

AT1G15010
type: EnsemblDatabaseReference

263549_at
type: EFO_0005072
part of: A-AFFY-2

(Sample) ecotype/Col-0
type: EFO_0005148
property type: ecotype
property value: Col-0

AT1G15010 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.37017445993325
p value: 0.0414259822141194
refers to: AT1G15010
refers to: 260744_at
t statistic: -4.34930554686974

261150_at
type: EFO_0005072
part of: A-AFFY-2

SUFE2
type: EnsemblDatabaseReference

LSU1 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.35776085536737
p value: 0.00246977914358701
refers to: 252269_at
refers to: LSU1
t statistic: -7.39906560997407

ATHCHIB DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -2.33590898649777
p value: 1.78306004510837E-5
refers to: ATHCHIB
refers to: 256243_at
t statistic: -17.2519697525506

261892_at
type: EFO_0005072
part of: A-AFFY-2

E-GEOD-15236
type: microarray 1colour mrna differential
RO_0002162: Arabidopsis thaliana
description: The Mediator complex is an evolutionary conserved multiprotein complex that plays an essential role in initiating and regulating transcription. Its function is to act as a universal adaptor between RNA Polymerase II and DNA-bound transcription factors to translate regulatory information from activators and repressors to the transcriptional machinery. We have found that the PFT1 gene (which encodes the MED25 subunit of the Mediator complex) is required for the uncompromised expression of both salicylic acid- and jasmonate-dependent defense genes as well as resistance to the leaf-infecting fungal pathogens, Alternaria brassicicola and Botrytis cinerea in Arabidopsis. Surprisingly, we found that the pft1/med25 mutant showed increased resistance to the root infecting pathogen Fusarium oxysporum and that this resistance was independent of classical defense genes. In addition, the over-expression of PFT1 led to increased susceptibility to F. oxysporum. Therefore, to explore this phenomenon further, we wished to use whole genome transcript profiling to identify which genes may be playing a role in pft1/med25-mediated resistance to F. oxysporum. Experiment Overall Design: We grew both WT and pft1/med25 plants for four weeks in soil. After four weeks we treated the plants by root-dipping in either water or a F. oxysporum spore suspension before replanting them back into soil. There were four independent replicates of each treatment and each replicate contained 20 plants each. The treatments were WT (mock): pft1 (mock): WT (infected): pft1 (infected). Each replicate (16 in total) was harvested after 48 hours and the resulting RNA was used for hybridization to an Affymetrix ATH1 chip.
uses data from: http://identifiers.org/pubmed/19671879

ATMRU1
type: EnsemblDatabaseReference

265917_at
type: EFO_0005072
part of: A-AFFY-2

ZIP5 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.1214115423855
p value: 0.00526278197400094
refers to: 264574_at
refers to: ZIP5
t statistic: -6.25995366782941

CYP86A7 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03195700822068
p value: 0.00246977914358701
refers to: 260241_at
refers to: CYP86A7
t statistic: -7.38847940840579

AZI1
type: EnsemblDatabaseReference

ATXTH19
type: EnsemblDatabaseReference

ATDR4
type: EnsemblDatabaseReference

AT2G13820
type: EnsemblDatabaseReference

261459_at
type: EFO_0005072
part of: A-AFFY-2

UNE8
type: EnsemblDatabaseReference

(Sample) organism/Arabidopsis thaliana
type: Arabidopsis thaliana
property type: organism
property value: Arabidopsis thaliana

PDF1.2b
type: EnsemblDatabaseReference

AtRLP19
type: EnsemblDatabaseReference

GLR5
type: EnsemblDatabaseReference

257365_x_at
type: EFO_0005072
part of: A-AFFY-2

AT4G29700 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.44719194950506
p value: 0.00407882130307531
refers to: AT4G29700
refers to: 253697_at
t statistic: -6.61691618302381

246195_at
type: EFO_0005072
part of: A-AFFY-2

LAL5 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -3.11542864277062
p value: 0.00581221429732187
refers to: LAL5
refers to: 258100_at
t statistic: -6.12895132147976

245393_at
type: EFO_0005072
part of: A-AFFY-2

PER39
type: EnsemblDatabaseReference

258897_at
type: EFO_0005072
part of: A-AFFY-2

MEE3 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.33181658734198
p value: 0.0121317050515056
refers to: 263549_at
refers to: MEE3
t statistic: -5.90001940017972

ATXTH19 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14274701028387
p value: 0.00580340210840648
refers to: ATXTH19
refers to: 253608_at
t statistic: -7.06810509223267

AtRLP19 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2949046859273
p value: 1.78503773622133E-4
refers to: 265917_at
refers to: AtRLP19
t statistic: -12.1294661109222

STZ DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00618480117716
p value: 0.0230916232813194
refers to: STZ
refers to: 261648_at
t statistic: -5.03753740702389

266070_at
type: EFO_0005072
part of: A-AFFY-2

250942_at
type: EFO_0005072
part of: A-AFFY-2

AT4G01390
type: EnsemblDatabaseReference

258890_at
type: EFO_0005072
part of: A-AFFY-2

AT3G16530 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -2.21444192845297
p value: 6.61554335016386E-5
refers to: AT3G16530
refers to: 257206_at
t statistic: -14.0237349149184

AT3G16450 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02867115185817
p value: 0.00147765048765348
refers to: AT3G16450
refers to: 259384_at
t statistic: -8.34072076451815

AT4G17470
type: EnsemblDatabaseReference

AT3G05730 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.14182958923699
p value: 2.80221107269959E-4
refers to: AT3G05730
refers to: 258897_at
t statistic: -13.3315622157802

GH3.3 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07846666505357
p value: 0.00849576601210895
refers to: GH3.3
refers to: 245076_at
t statistic: -5.69705004905138

(Assay) Infected pft1 leaf, rep1
type: Assay
identifier: Infected pft1 leaf, rep1
has participant: A-AFFY-2

AT2G39030/T7F6.20 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -2.91617573555521
p value: 0.00407882130307531
refers to: 266142_at
refers to: AT2G39030/T7F6.20
t statistic: -6.62564818914854

JMT DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.12396706422667
p value: 3.1057576150383E-4
refers to: JMT
refers to: 261150_at
t statistic: -11.0246255593793

PFT1
type: EnsemblDatabaseReference

PER39 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.41948519091277
p value: 0.00246977914358701
refers to: 254914_at
refers to: PER39
t statistic: -7.43430766926644

OMTF3
type: EnsemblDatabaseReference

263161_at
type: EFO_0005072
part of: A-AFFY-2

CYP86A7
type: EnsemblDatabaseReference

AT4G08300 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.18036252086494
p value: 0.00453757305640653
refers to: AT4G08300
refers to: 255127_at
t statistic: -6.47760835144499

266338_at
type: EFO_0005072
part of: A-AFFY-2

256243_at
type: EFO_0005072
part of: A-AFFY-2

MEE3
type: EnsemblDatabaseReference

AKR4C8
type: EnsemblDatabaseReference

PR4
type: EnsemblDatabaseReference

251304_at
type: EFO_0005072
part of: A-AFFY-2

ATEXLB1
type: EnsemblDatabaseReference

DIN11
type: EnsemblDatabaseReference

260783_at
type: EFO_0005072
part of: A-AFFY-2

AT3G16530
type: EnsemblDatabaseReference

AT4G17470 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.12478775062561
p value: 0.0413875677798641
refers to: AT4G17470
refers to: 245422_at
t statistic: -4.35720945385662

257206_at
type: EFO_0005072
part of: A-AFFY-2

AT4G16260
type: EnsemblDatabaseReference

253911_at
type: EFO_0005072
part of: A-AFFY-2

QQS UP in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 2.29543863743309
p value: 2.80221107269959E-4
refers to: 256940_at
refers to: QQS
t statistic: 13.4929915083759

ZIP5
type: EnsemblDatabaseReference

AT1G62510
type: EnsemblDatabaseReference

AT1G66100
type: EnsemblDatabaseReference

AT2G13820 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.07448838513041
p value: 0.00246977914358701
refers to: 265656_at
refers to: AT2G13820
t statistic: -7.47007829085715

AKR4C8 UP in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.02579693146378
p value: 0.0104674503875545
refers to: 267181_at
refers to: AKR4C8
t statistic: 6.10129226170038

(Assay) Infected Col-0 leaf, rep1
type: Assay
identifier: Infected Col-0 leaf, rep1
has participant: A-AFFY-2

AT1G31710
type: EnsemblDatabaseReference

ORA59 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -2.49070452622859
p value: 0.0015722942709642
refers to: ORA59
refers to: 260783_at
t statistic: -8.10796533980453

AT1G33340 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06455224719621
p value: 3.54571468716944E-4
refers to: AT1G33340
refers to: 256537_at
t statistic: -10.6485768218066

ATCSLA01
type: EnsemblDatabaseReference

259429_at
type: EFO_0005072
part of: A-AFFY-2

QQS
type: EnsemblDatabaseReference

AT1G33340
type: EnsemblDatabaseReference

ATHCHIB
type: EnsemblDatabaseReference

ATMPK3
type: EnsemblDatabaseReference

254907_at
type: EFO_0005072
part of: A-AFFY-2

QQS UP in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: IncreasedDifferentialExpressionRatio
fold change: 2.26248416371538
p value: 8.88178266998203E-7
refers to: 256940_at
refers to: QQS
t statistic: 29.477486451147

CYP81F4 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05697131967082
p value: 0.0254149344291265
refers to: 253073_at
refers to: CYP81F4
t statistic: -4.91347106283846

AT1G21100
type: EnsemblDatabaseReference

AT3G09020
type: EnsemblDatabaseReference

AT3G16450
type: EnsemblDatabaseReference

WRKY54 UP in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: IncreasedDifferentialExpressionRatio
fold change: 1.4660223173548
p value: 0.018132084799647
refers to: 257382_at
refers to: WRKY54
t statistic: 4.89320291670207

(Factor value) INFECT/Fusarium oxysporum
type: NCBITaxon 5507
property type: INFECT
property value: Fusarium oxysporum

AT4G01390 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.65169353056964
p value: 0.00321816800651248
refers to: AT4G01390
refers to: 255621_at
t statistic: -8.1082243946124

GH3.3
type: EnsemblDatabaseReference

257636_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) Infected Col-0 leaf, rep2
type: Assay
identifier: Infected Col-0 leaf, rep2
has participant: A-AFFY-2

LSU1
type: EnsemblDatabaseReference

256537_at
type: EFO_0005072
part of: A-AFFY-2

PR4 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -2.05228803173616
p value: 0.00274647575953986
refers to: PR4
refers to: 258791_at
t statistic: -8.56278776724808

AT3G28220
type: EnsemblDatabaseReference

MAM-L DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.76411185359642
p value: 0.00265390988979705
refers to: 249867_at
refers to: MAM-L
t statistic: -8.66296949771132

AT2G43590
type: EnsemblDatabaseReference

260241_at
type: EFO_0005072
part of: A-AFFY-2

HSPRO2
type: EnsemblDatabaseReference

246603_at
type: EFO_0005072
part of: A-AFFY-2

CYP81F4
type: EnsemblDatabaseReference

252265_at
type: EFO_0005072
part of: A-AFFY-2

PFT1 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.50592820218959
p value: 3.9798941859862E-4
refers to: PFT1
refers to: 255725_at
t statistic: -10.4425176311199

266415_at
type: EFO_0005072
part of: A-AFFY-2

AT4G24350
type: EnsemblDatabaseReference

GRXC11
type: EnsemblDatabaseReference

CYP71B22
type: EnsemblDatabaseReference

ATPRP2
type: EnsemblDatabaseReference

ATCLH1 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.47129478964388
p value: 0.00580340210840648
refers to: ATCLH1
refers to: 255786_at
t statistic: -7.06251873468352

(Assay) Mock pft1 leaf, rep4
type: Assay
identifier: Mock pft1 leaf, rep4
has participant: A-AFFY-2

WRKY54
type: EnsemblDatabaseReference

257382_at
type: EFO_0005072
part of: A-AFFY-2

CYP86A4
type: EnsemblDatabaseReference

GLR5 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02219649397375
p value: 0.00276632930610143
refers to: GLR5
refers to: 266338_at
t statistic: -7.22170839639101

ATEXT4 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.64535422485712
p value: 0.0280728146735784
refers to: 264960_at
refers to: ATEXT4
t statistic: -4.81171032944758

MAM-L DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -2.06635229885113
p value: 4.68136194557919E-4
refers to: MAM-L
refers to: 249867_at
t statistic: -10.0835874920564

GASA9 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06534319411954
p value: 0.0413875677798641
refers to: GASA9
refers to: 264195_at
t statistic: -4.35843556352363

AT1G54020 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -2.28101888309475
p value: 0.00147765048765348
refers to: AT1G54020
refers to: 263161_at
t statistic: -8.20384214665775

(Factor value) INFECT/none
type: EFO_0001461
property type: INFECT
property value: none

264960_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) Infected pft1 leaf, rep4
type: Assay
identifier: Infected pft1 leaf, rep4
has participant: A-AFFY-2

(Sample) organism part/leaf
type: EFO_0000993
property type: organism part
property value: leaf

AT2G13820
type: EnsemblDatabaseReference

UNE8
type: EnsemblDatabaseReference

AtRLP19
type: EnsemblDatabaseReference

245076_at
type: EFO_0005072
part of: A-AFFY-2

GLR5
type: EnsemblDatabaseReference

ATCLH1 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.88068246213921
p value: 0.0034797417225357
refers to: ATCLH1
refers to: 255786_at
t statistic: -6.83191077948245

(Assay) Infected pft1 leaf, rep2
type: Assay
identifier: Infected pft1 leaf, rep2
has participant: A-AFFY-2

ATCLH1
type: EnsemblDatabaseReference

254914_at
type: EFO_0005072
part of: A-AFFY-2

ATEXT4 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05792505740515
p value: 0.0443993656280023
refers to: 264960_at
refers to: ATEXT4
t statistic: -3.95999449446094

AT4G29700
type: EnsemblDatabaseReference

JMT
type: EnsemblDatabaseReference

PNP-A UP in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.64844924593886
p value: 0.0186650777556014
refers to: PNP-A
refers to: 266070_at
t statistic: 5.30449852574325

UBC17 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.28395308520518
p value: 0.00553785949881521
refers to: UBC17
refers to: 246195_at
t statistic: -6.20100502118593

PER39
type: EnsemblDatabaseReference

AT1G62510 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.45744345113212
p value: 6.41129918433768E-4
refers to: AT1G62510
refers to: 265111_at
t statistic: -11.53261059367

AT1G54020 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.79788318554888
p value: 0.0259109769375403
refers to: 263161_at
refers to: AT1G54020
t statistic: -4.89503052768945

AT3G16670
type: EnsemblDatabaseReference

254024_at
type: EFO_0005072
part of: A-AFFY-2

ATMPK3 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04204495781155
p value: 0.00360099870413819
refers to: 252592_at
refers to: ATMPK3
t statistic: -7.82879941607302

256527_at
type: EFO_0005072
part of: A-AFFY-2

255725_at
type: EFO_0005072
part of: A-AFFY-2

AtRLP19 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.42174903406193
p value: 0.00176899384515685
refers to: 265917_at
refers to: AtRLP19
t statistic: -9.39693596700387

PER21
type: EnsemblDatabaseReference

AT4G25780
type: EnsemblDatabaseReference

ATSDI1 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.24492624594616
p value: 0.009972697455753
refers to: ATSDI1
refers to: 248676_at
t statistic: -5.52401985929369

WRKY40
type: EnsemblDatabaseReference

SD11 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.36250433321993
p value: 0.00321816800651248
refers to: SD11
refers to: 253911_at
t statistic: -7.98567132616233

259211_at
type: EFO_0005072
part of: A-AFFY-2

Arabidopsis thaliana
type: OBI_0100026

AT3G28220 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.25698210849307
p value: 0.0147405441565712
refers to: 256577_at
refers to: AT3G28220
t statistic: -5.07915272253192

Analysis of 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: MicroarrayDifferentialExpressionAnalysis

259384_at
type: EFO_0005072
part of: A-AFFY-2

256577_at
type: EFO_0005072
part of: A-AFFY-2

AT1G66100 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.41005843368652
p value: 1.15047757386929E-4
refers to: AT1G66100
refers to: 256527_at
t statistic: -13.0164810538277

SD11
type: EnsemblDatabaseReference

AT1G54020
type: EnsemblDatabaseReference

245465_at
type: EFO_0005072
part of: A-AFFY-2

PFT1
type: EnsemblDatabaseReference

OMTF3
type: EnsemblDatabaseReference

PNP-A UP in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: IncreasedDifferentialExpressionRatio
fold change: 1.5392370458491
p value: 0.00133857496294791
refers to: PNP-A
refers to: 266070_at
t statistic: 8.55114379906366

(Assay) Infected Col-0 leaf, rep3
type: Assay
identifier: Infected Col-0 leaf, rep3
has participant: A-AFFY-2

246602_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) Mock Col-0 leaf, rep2
type: Assay
identifier: Mock Col-0 leaf, rep2
has participant: A-AFFY-2

257017_at
type: EFO_0005072
part of: A-AFFY-2

PR4
type: EnsemblDatabaseReference

UBC17
type: EnsemblDatabaseReference

AT2G39030/T7F6.20
type: EnsemblDatabaseReference

266142_at
type: EFO_0005072
part of: A-AFFY-2

AT3G16530
type: EnsemblDatabaseReference

CYP86A4 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.25589756955257
p value: 2.80221107269959E-4
refers to: 259429_at
refers to: CYP86A4
t statistic: -14.2325913493543

264195_at
type: EFO_0005072
part of: A-AFFY-2

AT4G16260
type: EnsemblDatabaseReference

AT1G66100
type: EnsemblDatabaseReference

OMTF3 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.46748503308346
p value: 0.00168625801302023
refers to: OMTF3
refers to: 251304_at
t statistic: -7.97830959277225

AT4G11190
type: EnsemblDatabaseReference

STZ
type: EnsemblDatabaseReference

ATMRU1 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0233933806792
p value: 0.00276613476379358
refers to: ATMRU1
refers to: 249727_at
t statistic: -8.43290837154155

MAM-L
type: EnsemblDatabaseReference

AT5G03350
type: EnsemblDatabaseReference

QQS
type: EnsemblDatabaseReference

AT1G33340
type: EnsemblDatabaseReference

ORA59
type: EnsemblDatabaseReference

AT1G66100 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.98312915296368
p value: 2.80221107269959E-4
refers to: 256527_at
refers to: AT1G66100
t statistic: -13.2816781183443

LTP2
type: EnsemblDatabaseReference

HSPRO2 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.03277655393724
p value: 0.00492669145690722
refers to: HSPRO2
refers to: 267357_at
t statistic: -7.32892048843708

BXL5
type: EnsemblDatabaseReference

AT3G09020
type: EnsemblDatabaseReference

LTP2 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02784749552099
p value: 0.00246977914358701
refers to: LTP2
refers to: 266415_at
t statistic: -7.43289282962515

267357_at
type: EFO_0005072
part of: A-AFFY-2

ATDR4 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.2095259796927
p value: 0.0015722942709642
refers to: ATDR4
refers to: 245736_at
t statistic: -8.09221334997895

AT4G08300
type: EnsemblDatabaseReference

249727_at
type: EFO_0005072
part of: A-AFFY-2

SUFE2 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05962172647462
p value: 0.0339453812672951
refers to: SUFE2
refers to: 245193_at
t statistic: -4.21365899864237

252269_at
type: EFO_0005072
part of: A-AFFY-2

LSU1
type: EnsemblDatabaseReference

LTP2 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.38791197244158
p value: 2.80221107269959E-4
refers to: LTP2
refers to: 266415_at
t statistic: -13.8888041017718

267181_at
type: EFO_0005072
part of: A-AFFY-2

AT3G28220
type: EnsemblDatabaseReference

AT1G62510 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.24546536146141
p value: 0.00441143714407298
refers to: AT1G62510
refers to: 265111_at
t statistic: -6.52865479122091

JAZ9
type: EnsemblDatabaseReference

254818_at
type: EFO_0005072
part of: A-AFFY-2

GASA9
type: EnsemblDatabaseReference

AT5G03350 UP in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: IncreasedDifferentialExpressionRatio
fold change: 1.63321495484713
p value: 0.0017721721848972
refers to: AT5G03350
refers to: 250942_at
t statistic: 7.90806512002172

AT2G43590
type: EnsemblDatabaseReference

SD11 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.73733054083325
p value: 4.43133408044698E-4
refers to: SD11
refers to: 253911_at
t statistic: -10.2014464926751

265111_at
type: EFO_0005072
part of: A-AFFY-2

CYP81F4
type: EnsemblDatabaseReference

GRXC11 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0464275682155
p value: 0.00265390988979705
refers to: GRXC11
refers to: 251196_at
t statistic: -8.74063408879053

PDF1.2b DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -6.3388735290226
p value: 4.47680641707949E-6
refers to: PDF1.2b
refers to: 257365_x_at
t statistic: -21.0926876182948

258419_at
type: EFO_0005072
part of: A-AFFY-2

253608_at
type: EFO_0005072
part of: A-AFFY-2

252592_at
type: EFO_0005072
part of: A-AFFY-2

AT4G24350
type: EnsemblDatabaseReference

GRXC11
type: EnsemblDatabaseReference

AT1G31690
type: EnsemblDatabaseReference

CYP71B22
type: EnsemblDatabaseReference

260560_at
type: EFO_0005072
part of: A-AFFY-2

ATPRP2
type: EnsemblDatabaseReference

260205_at
type: EFO_0005072
part of: A-AFFY-2

Analysis of 'Fusarium oxysporum' vs 'none' in 'wild type'
type: MicroarrayDifferentialExpressionAnalysis

WRKY54
type: EnsemblDatabaseReference

251196_at
type: EFO_0005072
part of: A-AFFY-2

ATEXT4
type: EnsemblDatabaseReference

PNP-A
type: EnsemblDatabaseReference

CYP86A4
type: EnsemblDatabaseReference

245736_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) Infected pft1 leaf, rep3
type: Assay
identifier: Infected pft1 leaf, rep3
has participant: A-AFFY-2

AZI1 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.35286585893295
p value: 0.0186650777556014
refers to: AZI1
refers to: 254818_at
t statistic: -5.29837239318629

AT3G05730
type: EnsemblDatabaseReference

AT2G13820 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.27357648113139
p value: 6.00266686923913E-4
refers to: AT2G13820
refers to: 265656_at
t statistic: -11.8256085446748

LAL5
type: EnsemblDatabaseReference

AT2G34810
type: EnsemblDatabaseReference

ATSDI1
type: EnsemblDatabaseReference

AT2G43590 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06327952154148
p value: 0.0191500104934183
refers to: AT2G43590
refers to: 260560_at
t statistic: -4.83292042910673

AT1G15010
type: EnsemblDatabaseReference

(Assay) Mock Col-0 leaf, rep4
type: Assay
identifier: Mock Col-0 leaf, rep4
has participant: A-AFFY-2

CYP71B22 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.37453118945791
p value: 0.0249499688971257
refers to: CYP71B22
refers to: 257636_at
t statistic: -4.52688670513075

BXL5 UP in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.08747920391833
p value: 0.00321816800651248
refers to: 257017_at
refers to: BXL5
t statistic: 8.02887627128724

ATCLH1
type: EnsemblDatabaseReference

AT4G29700
type: EnsemblDatabaseReference

245193_at
type: EFO_0005072
part of: A-AFFY-2

SUFE2
type: EnsemblDatabaseReference

JAZ9 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.00481381971803
p value: 1.78503773622133E-4
refers to: JAZ9
refers to: 260205_at
t statistic: -12.1784885619907

JMT
type: EnsemblDatabaseReference

(Sample) genotype/wild type genotype
type: EFO_0000001
property type: genotype
property value: wild type genotype

(Assay) Mock pft1 leaf, rep2
type: Assay
identifier: Mock pft1 leaf, rep2
has participant: A-AFFY-2

ATMRU1
type: EnsemblDatabaseReference

AT3G16670
type: EnsemblDatabaseReference

264574_at
type: EFO_0005072
part of: A-AFFY-2

AZI1
type: EnsemblDatabaseReference

(Assay) Mock pft1 leaf, rep3
type: Assay
identifier: Mock pft1 leaf, rep3
has participant: A-AFFY-2

248676_at
type: EFO_0005072
part of: A-AFFY-2

PER21
type: EnsemblDatabaseReference

ATXTH19
type: EnsemblDatabaseReference

AT4G25780
type: EnsemblDatabaseReference

ATDR4
type: EnsemblDatabaseReference

WRKY40
type: EnsemblDatabaseReference

AT1G31710 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.13374020032664
p value: 0.00281163651800418
refers to: AT1G31710
refers to: 246602_at
t statistic: -7.17773331919455

AT3G16670 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.38229817427087
p value: 0.00509657455931364
refers to: 258419_at
refers to: AT3G16670
t statistic: -6.33040830277051

ATMRU1 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.02678042711751
p value: 8.23257253758793E-4
refers to: 249727_at
refers to: ATMRU1
t statistic: -9.17672623433753

PDF1.2b
type: EnsemblDatabaseReference

253697_at
type: EFO_0005072
part of: A-AFFY-2

SD11
type: EnsemblDatabaseReference

AT1G54020
type: EnsemblDatabaseReference

261648_at
type: EFO_0005072
part of: A-AFFY-2

DIN11 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -2.56757234005356
p value: 0.00372973564493461
refers to: DIN11
refers to: 252265_at
t statistic: -6.75943194313638

PFT1 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.47358484379138
p value: 1.49122167180133E-4
refers to: PFT1
refers to: 255725_at
t statistic: -17.9622851934655

AT4G01390 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.7568568143632
p value: 3.54571468716944E-4
refers to: AT4G01390
refers to: 255621_at
t statistic: -10.7233275937072

254150_at
type: EFO_0005072
part of: A-AFFY-2

AT1G31690 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04089615088221
p value: 9.76808979597073E-4
refers to: AT1G31690
refers to: 246603_at
t statistic: -10.6195478446985

AT3G09020 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05675340536321
p value: 0.0435904706099105
refers to: 259211_at
refers to: AT3G09020
t statistic: -3.98201571065757

UBC17
type: EnsemblDatabaseReference

AT2G39030/T7F6.20
type: EnsemblDatabaseReference

AT1G21100 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.82777079952943
p value: 0.0250260917761628
refers to: AT1G21100
refers to: 261459_at
t statistic: -4.51467682088298

CYP86A4 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.48163215915072
p value: 0.00114492801970312
refers to: CYP86A4
refers to: 259429_at
t statistic: -8.77480085114339

PER21 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.61067739563463
p value: 0.0491294708815084
refers to: PER21
refers to: 265471_at
t statistic: -4.17053158035632

AT4G01390
type: EnsemblDatabaseReference

AT2G34810 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.47503536701307
p value: 0.00581221429732187
refers to: AT2G34810
refers to: 267425_at
t statistic: -6.13230386196098

249867_at
type: EFO_0005072
part of: A-AFFY-2

260744_at
type: EFO_0005072
part of: A-AFFY-2

AT4G17470
type: EnsemblDatabaseReference

245463_at
type: EFO_0005072
part of: A-AFFY-2

AT4G11190
type: EnsemblDatabaseReference

245422_at
type: EFO_0005072
part of: A-AFFY-2

STZ
type: EnsemblDatabaseReference

ZIP5 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.38296447503503
p value: 0.00626933147399442
refers to: 264574_at
refers to: ZIP5
t statistic: -6.88895685599399

MAM-L
type: EnsemblDatabaseReference

255621_at
type: EFO_0005072
part of: A-AFFY-2

AT5G03350
type: EnsemblDatabaseReference

ORA59
type: EnsemblDatabaseReference

LTP2
type: EnsemblDatabaseReference

PR4 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -4.22927905645016
p value: 1.06523673562276E-6
refers to: 258791_at
refers to: PR4
t statistic: -26.7471770207163

CYP86A7
type: EnsemblDatabaseReference

BXL5
type: EnsemblDatabaseReference

264007_at
type: EFO_0005072
part of: A-AFFY-2

MEE3
type: EnsemblDatabaseReference

ATPRP2 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21473876383789
p value: 9.75713442242244E-4
refers to: ATPRP2
refers to: 264007_at
t statistic: -10.7245601109153

AKR4C8
type: EnsemblDatabaseReference

CYP81F4 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.56439171915234
p value: 1.78306004510837E-5
refers to: CYP81F4
refers to: 253073_at
t statistic: -17.5475273446649

ATEXLB1
type: EnsemblDatabaseReference

DIN11
type: EnsemblDatabaseReference

AT4G08300
type: EnsemblDatabaseReference

258791_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) Mock Col-0 leaf, rep1
type: Assay
identifier: Mock Col-0 leaf, rep1
has participant: A-AFFY-2

(Assay) Infected Col-0 leaf, rep4
type: Assay
identifier: Infected Col-0 leaf, rep4
has participant: A-AFFY-2

255786_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) Mock Col-0 leaf, rep3
type: Assay
identifier: Mock Col-0 leaf, rep3
has participant: A-AFFY-2

ZIP5
type: EnsemblDatabaseReference

AT1G62510
type: EnsemblDatabaseReference

(Assay) Mock pft1 leaf, rep1
type: Assay
identifier: Mock pft1 leaf, rep1
has participant: A-AFFY-2

253073_at
type: EFO_0005072
part of: A-AFFY-2

AT1G31710
type: EnsemblDatabaseReference

JAZ9
type: EnsemblDatabaseReference

GASA9
type: EnsemblDatabaseReference

ATCSLA01
type: EnsemblDatabaseReference

(Sample) genotype/pft1 mutant
type: EFO_0000001
property type: genotype
property value: pft1 mutant

A-AFFY-2
type: EFO_0000269

267425_at
type: EFO_0005072
part of: A-AFFY-2

256940_at
type: EFO_0005072
part of: A-AFFY-2

ATHCHIB
type: EnsemblDatabaseReference

AT1G31690 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04383529256278
p value: 3.54571468716944E-4
refers to: AT1G31690
refers to: 246603_at
t statistic: -10.6851995684021

AT4G25780 UP in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0661237004753
p value: 0.0038186577915196
refers to: 254024_at
refers to: AT4G25780
t statistic: 7.74620591518181

ATMPK3
type: EnsemblDatabaseReference

255127_at
type: EFO_0005072
part of: A-AFFY-2

AT1G21100
type: EnsemblDatabaseReference

WRKY40 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.26676180121478
p value: 0.0170357278757543
refers to: WRKY40
refers to: 261892_at
t statistic: -5.44941379802782

AT4G24350 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -2.22934337590838
p value: 4.54417630634019E-5
refers to: AT4G24350
refers to: 254150_at
t statistic: -15.0165556706146

AT3G16450
type: EnsemblDatabaseReference

(Factor value) GENOTYPE/pft1 mutant
type: EFO_0000001
property type: GENOTYPE
property value: pft1 mutant

AT1G31690
type: EnsemblDatabaseReference

265471_at
type: EFO_0005072
part of: A-AFFY-2

AT1G21100 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.61053845076727
p value: 0.0199807465197184
refers to: AT1G21100
refers to: 261459_at
t statistic: -5.19441989296969

AT4G24350 DOWN in 'Fusarium oxysporum' vs 'none' in 'wild type'
type: DecreasedDifferentialExpressionRatio
fold change: -1.0583033733185
p value: 0.00321816800651248
refers to: 254150_at
refers to: AT4G24350
t statistic: -8.07479022015398

ATEXLB1 DOWN in 'Fusarium oxysporum' vs 'none' in 'pft1 mutant'
type: DecreasedDifferentialExpressionRatio
fold change: -1.29177093308976
p value: 1.78503773622133E-4
refers to: 245463_at
refers to: ATEXLB1
t statistic: -12.0308271370397