DREB1A DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.01337943333334
p value: 0.0214641930020019
refers to: 254066_at
refers to: DREB1A
t statistic: -6.78986552504961

GH3.3
type: EnsemblDatabaseReference

AtMYB74
type: EnsemblDatabaseReference

MAPKKK14 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.29098415
p value: 0.0198415319695733
refers to: MAPKKK14
refers to: 266832_at
t statistic: 4.92694641762552

SAG21
type: EnsemblDatabaseReference

NCED5
type: EnsemblDatabaseReference

AT1G76600 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.65649248333333
p value: 0.0412231669241262
refers to: AT1G76600
refers to: 259979_at
t statistic: 4.09577739659808

(Assay) GV3101 3hpi 2
type: Assay
identifier: GV3101 3hpi 2
has participant: A-AFFY-2

ERF019 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.95272508333333
p value: 0.0349299958112219
refers to: 264202_at
refers to: ERF019
t statistic: 4.3042991334044

259846_at
type: EFO_0005072
part of: A-AFFY-2

PROPEP2 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.03187211666667
p value: 0.00705547293841596
refers to: PROPEP2
refers to: 247205_at
t statistic: 6.35274579350574

AT5G02760
type: EnsemblDatabaseReference

AT1G55450 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.27398876666667
p value: 0.0397789033296815
refers to: AT1G55450
refers to: 265075_at
t statistic: 4.15947655268723

AT2G27660
type: EnsemblDatabaseReference

AT3G23170
type: EnsemblDatabaseReference

ATSERAT2;1
type: EnsemblDatabaseReference

ATGA2OX4
type: EnsemblDatabaseReference

267262_at
type: EFO_0005072
part of: A-AFFY-2

SUFE2
type: EnsemblDatabaseReference

ACS8
type: EnsemblDatabaseReference

DREB1A
type: EnsemblDatabaseReference

267093_at
type: EFO_0005072
part of: A-AFFY-2

CYP81D8
type: EnsemblDatabaseReference

(Assay) C58 3hpi 6
type: Assay
identifier: C58 3hpi 6
has participant: A-AFFY-2

261892_at
type: EFO_0005072
part of: A-AFFY-2

(Sample) organism/Arabidopsis thaliana
type: Arabidopsis thaliana
property type: organism
property value: Arabidopsis thaliana

253046_at
type: EFO_0005072
part of: A-AFFY-2

AT4G37710
type: EnsemblDatabaseReference

IAA19
type: EnsemblDatabaseReference

WRKY53
type: EnsemblDatabaseReference

ATBZIP61
type: EnsemblDatabaseReference

AT1G26380
type: EnsemblDatabaseReference

PER4
type: EnsemblDatabaseReference

255479_at
type: EFO_0005072
part of: A-AFFY-2

251017_at
type: EFO_0005072
part of: A-AFFY-2

AT5G02760 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 2.04612041666667
p value: 0.00866535930378582
refers to: 251017_at
refers to: AT5G02760
t statistic: 5.95477991083336

(Assay) C58 3hpi 1
type: Assay
identifier: C58 3hpi 1
has participant: A-AFFY-2

PIP2D DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.8349695
p value: 0.0335709728498291
refers to: 251858_at
refers to: PIP2D
t statistic: -5.62596860228169

247776_at
type: EFO_0005072
part of: A-AFFY-2

ATSERAT2;1 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.438605
p value: 0.0159997275127741
refers to: 260602_at
refers to: ATSERAT2;1
t statistic: 5.11440568012365

SNG1
type: EnsemblDatabaseReference

AT3G28220 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -2.99252503333333
p value: 0.0163242716839838
refers to: 256577_at
refers to: AT3G28220
t statistic: -7.39887232788177

259979_at
type: EFO_0005072
part of: A-AFFY-2

AT3G15720 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.69800483333333
p value: 0.00531233158640922
refers to: AT3G15720
refers to: 258252_at
t statistic: -6.74887378630261

AFR
type: EnsemblDatabaseReference

AT1G26380 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0789674
p value: 0.0284420050505505
refers to: 261021_at
refers to: AT1G26380
t statistic: 4.55936637397219

266832_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) C58 3hpi 5
type: Assay
identifier: C58 3hpi 5
has participant: A-AFFY-2

AT2G27660 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.05963568333333
p value: 0.00994292791173222
refers to: AT2G27660
refers to: 266247_at
t statistic: 5.72217918726431

ACS6 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.08329276666667
p value: 0.0364808479491413
refers to: 254926_at
refers to: ACS6
t statistic: 5.46392454886347

AT3G28420 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.32528921666667
p value: 0.0404505606066593
refers to: AT3G28420
refers to: 257900_at
t statistic: 4.13309830394775

WRKY15
type: EnsemblDatabaseReference

PIP2D
type: EnsemblDatabaseReference

ATGSTF12
type: EnsemblDatabaseReference

CYP71B7 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.05675071666666
p value: 0.0426315840976673
refers to: CYP71B7
refers to: 262793_at
t statistic: 5.04801589378528

PUB23 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.6359631
p value: 0.0375534288865567
refers to: PUB23
refers to: 263935_at
t statistic: 5.33111257328306

MAPKKK14
type: EnsemblDatabaseReference

IAA19 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.07096266666667
p value: 0.0243201608333409
refers to: IAA19
refers to: 258399_at
t statistic: 4.69550676727921

AT3G22600
type: EnsemblDatabaseReference

AT3G06070
type: EnsemblDatabaseReference

BGLU40 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.5533195
p value: 0.0214641930020019
refers to: 261016_at
refers to: BGLU40
t statistic: -6.77004350700347

HOS3-1
type: EnsemblDatabaseReference

ACS6 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.5466756
p value: 0.00406444223021339
refers to: ACS6
refers to: 254926_at
t statistic: 7.42697260359621

AT3G18560
type: EnsemblDatabaseReference

AT1G55450
type: EnsemblDatabaseReference

SAG21 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2500065
p value: 0.0362688075657613
refers to: SAG21
refers to: 255479_at
t statistic: 4.2641067324286

TT8
type: EnsemblDatabaseReference

264202_at
type: EFO_0005072
part of: A-AFFY-2

PUB22
type: EnsemblDatabaseReference

AT2G27830
type: EnsemblDatabaseReference

AT3G15720
type: EnsemblDatabaseReference

SNG1 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.75944185
p value: 0.0426315840976673
refers to: 267262_at
refers to: SNG1
t statistic: 5.07249463407012

(Assay) GV3101 3hpi 1
type: Assay
identifier: GV3101 3hpi 1
has participant: A-AFFY-2

AFR DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.12813708333334
p value: 0.0247692533899316
refers to: 263796_at
refers to: AFR
t statistic: -6.27327170080599

GH3.5
type: EnsemblDatabaseReference

260783_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) Reference 3hpi 1
type: Assay
identifier: Reference 3hpi 1
has participant: A-AFFY-2

261021_at
type: EFO_0005072
part of: A-AFFY-2

GH3.3 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 3.3720705
p value: 0.00640352707754754
refers to: GH3.3
refers to: 245076_at
t statistic: 6.53172584873746

254231_at
type: EFO_0005072
part of: A-AFFY-2

(Factor value) INFECT/Agrobacterium tumefaciens GV3101
type: EFO_0000001
property type: INFECT
property value: Agrobacterium tumefaciens GV3101

IAA5
type: EnsemblDatabaseReference

CAX1
type: EnsemblDatabaseReference

CAX1 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.25247066666667
p value: 0.0364138371275178
refers to: CAX1
refers to: 267093_at
t statistic: -4.25253185903791

ATPP2-A5 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.61922705
p value: 0.00743189094621492
refers to: 264213_at
refers to: ATPP2-A5
t statistic: 6.16337366487397

246272_at
type: EFO_0005072
part of: A-AFFY-2

254066_at
type: EFO_0005072
part of: A-AFFY-2

CYP81D8 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.72748448333333
p value: 0.0214641930020019
refers to: CYP81D8
refers to: 253046_at
t statistic: 6.54471128285912

ATMES9
type: EnsemblDatabaseReference

AT1G76600
type: EnsemblDatabaseReference

AT2G19780 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.08912843333333
p value: 0.0364808479491413
refers to: AT2G19780
refers to: 266682_at
t statistic: -5.45637077342132

IAMT1 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.22100766666667
p value: 0.00492262527687163
refers to: 248104_at
refers to: IAMT1
t statistic: 6.85223936617014

GH3.5 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.62805071666666
p value: 0.00866535930378582
refers to: GH3.5
refers to: 253908_at
t statistic: 5.88272733522317

AT1G05575 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.79923848333333
p value: 0.00743189094621492
refers to: AT1G05575
refers to: 263182_at
t statistic: 6.12930260220222

(Factor value) INFECT/Agrobacterium tumefaciens C58
type: NCBITaxon_176299
property type: INFECT
property value: Agrobacterium tumefaciens C58

AT4G22530
type: EnsemblDatabaseReference

GH3.3
type: EnsemblDatabaseReference

BGLU6 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.5447102
p value: 0.0364808479491413
refers to: BGLU6
refers to: 264271_at
t statistic: -5.499271700183

AtMYB74
type: EnsemblDatabaseReference

AT4G37710 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.61632696666667
p value: 0.0329163180126388
refers to: AT4G37710
refers to: 253060_at
t statistic: 4.38892516340877

SAG21
type: EnsemblDatabaseReference

CYP71B7 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.01667045
p value: 0.00492262527687163
refers to: CYP71B7
refers to: 262793_at
t statistic: 6.87618534546187

AT1G51800
type: EnsemblDatabaseReference

NCED5
type: EnsemblDatabaseReference

IAA1
type: EnsemblDatabaseReference

250083_at
type: EFO_0005072
part of: A-AFFY-2

CYP710A1
type: EnsemblDatabaseReference

257925_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) C58 3hpi 4
type: Assay
identifier: C58 3hpi 4
has participant: A-AFFY-2

(Assay) Reference 3hpi 6
type: Assay
identifier: Reference 3hpi 6
has participant: A-AFFY-2

AT3G28220
type: EnsemblDatabaseReference

AT2G25735 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.50080491666667
p value: 0.0217563074440934
refers to: AT2G25735
refers to: 266658_at
t statistic: 4.80345954950248

E-GEOD-13929
type: microarray 1colour mrna differential
RO_0002162: Arabidopsis thaliana
description: This study focuses on responses of the host plant to infection with Agrobacterium tumefaciens. Genome wide changes in gene expression were integrated with the alterations in metabolite levels three hours after inoculation of agrobacteria. Plants were infected with the virulent strain C58, harboring a T-DNA, or with strain GV3101, containing a disarmed Ti-plasmid. This allows discrimination between signals which derive from the bacterial pathogen and the T-DNA encoded genes. Experiment Overall Design: The bases of Arabidopsis thaliana (WS-2) inflorescence stalks were wounded and immediately infected with Agrobacterium tumefaciens or mock-infected for three hours. Stalks of intact plants were inoculated with the oncogenic strain C58 (C58 3 hpi 1 to 6) or the non-virulent strain GV3101 (GV3101 3 hpi 1 to 3) to provide conditions close to nature. The gene expression data of three independent experiments of infected material were compared with six non-infected samples (reference 3 hpi 1 to 6). Differential gene expression was determined by applying the LIMMA package (Linear Models for Microarray Data; Smyth, G.K. (2004) Applic. Genet. Mol. Biol. 3, Article 3; http://www.bepress.com/sagmb/vol3/iss1/art3/).
uses data from: http://identifiers.org/pubmed/17172353
uses data from: http://identifiers.org/pubmed/19794116

AT2G25735
type: EnsemblDatabaseReference

AtMYB74 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.20495051666667
p value: 0.0340728319755362
refers to: AtMYB74
refers to: 255250_at
t statistic: -4.3330808471805

BGLU40
type: EnsemblDatabaseReference

251858_at
type: EFO_0005072
part of: A-AFFY-2

253908_at
type: EFO_0005072
part of: A-AFFY-2

ATGA2OX4
type: EnsemblDatabaseReference

ACS8
type: EnsemblDatabaseReference

266658_at
type: EFO_0005072
part of: A-AFFY-2

AT4G37710
type: EnsemblDatabaseReference

IAA19
type: EnsemblDatabaseReference

AT4G20860
type: EnsemblDatabaseReference

254447_at
type: EFO_0005072
part of: A-AFFY-2

ATBZIP61
type: EnsemblDatabaseReference

PUB22 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.8568444
p value: 0.0138403394998253
refers to: PUB22
refers to: 252045_at
t statistic: 5.2940882462312

245397_at
type: EFO_0005072
part of: A-AFFY-2

HOS3-1 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.05301033333333
p value: 0.0119942957632717
refers to: HOS3-1
refers to: 246235_at
t statistic: -5.51076363368858

WRKY22 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.19939283333333
p value: 0.0487556103991621
refers to: 255568_at
refers to: WRKY22
t statistic: 4.8585666997466

AT1G72140 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04359273333333
p value: 0.0159997275127741
refers to: AT1G72140
refers to: 259846_at
t statistic: -5.10694606180525

TT8 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.17452278333333
p value: 0.0163242716839838
refers to: TT8
refers to: 255056_at
t statistic: -7.50542122383081

255056_at
type: EFO_0005072
part of: A-AFFY-2

AT2G19780
type: EnsemblDatabaseReference

SNG1
type: EnsemblDatabaseReference

AT1G48100
type: EnsemblDatabaseReference

AT2G28400
type: EnsemblDatabaseReference

PER4 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.82591356666667
p value: 0.0284420050505505
refers to: 261474_at
refers to: PER4
t statistic: 4.5642254792411

AT3G48460 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.06205121666667
p value: 0.008963329256093
refers to: AT3G48460
refers to: 252363_at
t statistic: -5.82307968510208

245076_at
type: EFO_0005072
part of: A-AFFY-2

ATBZIP61 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.13169886666666
p value: 0.0338312589705147
refers to: ATBZIP61
refers to: 251575_at
t statistic: 4.35408778305865

AT1G51800 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 2.53466153333333
p value: 0.0251054672771409
refers to: AT1G51800
refers to: 256169_at
t statistic: 4.65911432561831

266259_at
type: EFO_0005072
part of: A-AFFY-2

AFR
type: EnsemblDatabaseReference

PUB23
type: EnsemblDatabaseReference

UGT75C1
type: EnsemblDatabaseReference

ATGSTF12
type: EnsemblDatabaseReference

AT1G26380 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.1540783
p value: 0.0250883931240404
refers to: AT1G26380
refers to: 261021_at
t statistic: 6.19724980724415

ATMES9 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.43576868333333
p value: 0.00743189094621492
refers to: 246272_at
refers to: ATMES9
t statistic: -6.10311874792491

IAA1 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.04041983333333
p value: 0.0243201608333409
refers to: IAA1
refers to: 245397_at
t statistic: 4.70042457556516

IAA30
type: EnsemblDatabaseReference

259445_at
type: EFO_0005072
part of: A-AFFY-2

AT3G22600
type: EnsemblDatabaseReference

AT4G20860 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.38997153333333
p value: 0.0412231669241262
refers to: 254447_at
refers to: AT4G20860
t statistic: 4.09285146210928

AT3G06070
type: EnsemblDatabaseReference

HOS3-1
type: EnsemblDatabaseReference

ACS6
type: EnsemblDatabaseReference

WRKY40
type: EnsemblDatabaseReference

261474_at
type: EFO_0005072
part of: A-AFFY-2

AT3G28420
type: EnsemblDatabaseReference

ERF019
type: EnsemblDatabaseReference

AT1G72140
type: EnsemblDatabaseReference

256190_at
type: EFO_0005072
part of: A-AFFY-2

Arabidopsis thaliana
type: OBI_0100026

263182_at
type: EFO_0005072
part of: A-AFFY-2

256577_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) Reference 3hpi 5
type: Assay
identifier: Reference 3hpi 5
has participant: A-AFFY-2

265075_at
type: EFO_0005072
part of: A-AFFY-2

252045_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) Reference 3hpi 4
type: Assay
identifier: Reference 3hpi 4
has participant: A-AFFY-2

AT2G27830 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.36719458333333
p value: 0.0117212865811956
refers to: AT2G27830
refers to: 266259_at
t statistic: 5.53968784415685

AT3G18560 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.26791098333333
p value: 0.0225837955510202
refers to: AT3G18560
refers to: 256799_at
t statistic: 4.75954470727214

AT1G76790
type: EnsemblDatabaseReference

AtGolS3
type: EnsemblDatabaseReference

256169_at
type: EFO_0005072
part of: A-AFFY-2

AT1G26380
type: EnsemblDatabaseReference

257900_at
type: EFO_0005072
part of: A-AFFY-2

253066_at
type: EFO_0005072
part of: A-AFFY-2

Analysis of 'Agrobacterium tumefaciens GV3101' vs 'none'
type: MicroarrayDifferentialExpressionAnalysis

266995_at
type: EFO_0005072
part of: A-AFFY-2

246235_at
type: EFO_0005072
part of: A-AFFY-2

ATPP2-A5
type: EnsemblDatabaseReference

BGLU6
type: EnsemblDatabaseReference

IAA5
type: EnsemblDatabaseReference

AT2G28400 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.05929348333333
p value: 0.0189844807796215
refers to: AT2G28400
refers to: 265276_at
t statistic: 4.97386219717943

262793_at
type: EFO_0005072
part of: A-AFFY-2

PROPEP2
type: EnsemblDatabaseReference

DAD1
type: EnsemblDatabaseReference

254318_at
type: EFO_0005072
part of: A-AFFY-2

ATGA2OX4 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.00031166666667
p value: 0.014163615851202
refers to: 259445_at
refers to: ATGA2OX4
t statistic: 5.24129420046669

IAA30 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.5806558
p value: 0.00406444223021339
refers to: IAA30
refers to: 251246_at
t statistic: 7.65819050834675

ORA59
type: EnsemblDatabaseReference

ATMES9
type: EnsemblDatabaseReference

SUFE2 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.19177936666667
p value: 0.0430760145764413
refers to: SUFE2
refers to: 245193_at
t statistic: 4.03270363172519

(Factor value) INFECT/none
type: EFO_0001461
property type: INFECT
property value: none

AT3G23170 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.08329886666667
p value: 0.0471505978466071
refers to: AT3G23170
refers to: 257925_at
t statistic: 3.9222398431723

AT3G48460
type: EnsemblDatabaseReference

CYP710A1 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.12051471666667
p value: 0.0496884807674391
refers to: CYP710A1
refers to: 266995_at
t statistic: 3.87351693793094

AT1G55450
type: EnsemblDatabaseReference

AT4G22530
type: EnsemblDatabaseReference

245051_at
type: EFO_0005072
part of: A-AFFY-2

WRKY15 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.0703395
p value: 0.0457688571131533
refers to: WRKY15
refers to: 245051_at
t statistic: 3.96978004892355

WRKY22
type: EnsemblDatabaseReference

TT8
type: EnsemblDatabaseReference

253060_at
type: EFO_0005072
part of: A-AFFY-2

AT1G51800
type: EnsemblDatabaseReference

255250_at
type: EFO_0005072
part of: A-AFFY-2

IAA1
type: EnsemblDatabaseReference

CYP710A1
type: EnsemblDatabaseReference

PUB22
type: EnsemblDatabaseReference

AT3G28220
type: EnsemblDatabaseReference

AT1G05575
type: EnsemblDatabaseReference

RD20 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -2.93669911666667
p value: 0.0450400946006903
refers to: RD20
refers to: 255795_at
t statistic: -4.93341590845688

ORA59 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 2.08318135
p value: 0.0214641930020019
refers to: ORA59
refers to: 260783_at
t statistic: 6.6137121827905

CYP71B7
type: EnsemblDatabaseReference

RD20
type: EnsemblDatabaseReference

IAMT1
type: EnsemblDatabaseReference

264511_at
type: EFO_0005072
part of: A-AFFY-2

263935_at
type: EFO_0005072
part of: A-AFFY-2

ATPLC4
type: EnsemblDatabaseReference

DAD1 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.53454566666667
p value: 0.00352564549377051
refers to: 266883_at
refers to: DAD1
t statistic: -8.38291260543953

AT4G20860
type: EnsemblDatabaseReference

(Sample) ecotype/Ws-2
type: EFO_0005158
property type: ecotype
property value: Ws-2

AT4G22530 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.34792225
p value: 0.0436245504941302
refers to: AT4G22530
refers to: 254318_at
t statistic: 4.02213507354222

265276_at
type: EFO_0005072
part of: A-AFFY-2

258399_at
type: EFO_0005072
part of: A-AFFY-2

AT2G19780
type: EnsemblDatabaseReference

261016_at
type: EFO_0005072
part of: A-AFFY-2

255568_at
type: EFO_0005072
part of: A-AFFY-2

AT1G48100
type: EnsemblDatabaseReference

AT5G02760
type: EnsemblDatabaseReference

AT2G28400
type: EnsemblDatabaseReference

AT3G06070 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.2823779
p value: 0.0320268315826496
refers to: AT3G06070
refers to: 258468_at
t statistic: 4.41527531220039

ATPLC4 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.04287991666667
p value: 0.0231042623156901
refers to: ATPLC4
refers to: 247776_at
t statistic: -6.4028842509224

AT2G27660
type: EnsemblDatabaseReference

258252_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) Reference 3hpi 2
type: Assay
identifier: Reference 3hpi 2
has participant: A-AFFY-2

AT3G23170
type: EnsemblDatabaseReference

PUB23
type: EnsemblDatabaseReference

ATSERAT2;1
type: EnsemblDatabaseReference

245193_at
type: EFO_0005072
part of: A-AFFY-2

SUFE2
type: EnsemblDatabaseReference

UGT75C1
type: EnsemblDatabaseReference

DREB1A
type: EnsemblDatabaseReference

263796_at
type: EFO_0005072
part of: A-AFFY-2

(Assay) C58 3hpi 3
type: Assay
identifier: C58 3hpi 3
has participant: A-AFFY-2

CYP81D8
type: EnsemblDatabaseReference

IAA30
type: EnsemblDatabaseReference

AT1G76790 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.56340976666667
p value: 0.0198841864749583
refers to: AT1G76790
refers to: 259878_at
t statistic: -4.87902735984049

WRKY53
type: EnsemblDatabaseReference

PER4
type: EnsemblDatabaseReference

WRKY53 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 2.10726103333333
p value: 0.00406444223021339
refers to: WRKY53
refers to: 254231_at
t statistic: 7.51472742749297

ATMES9 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.6120858
p value: 0.0128074134458714
refers to: ATMES9
refers to: 246272_at
t statistic: -9.26651547313809

ACS6
type: EnsemblDatabaseReference

AT3G22600 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.84435433333333
p value: 0.0140392920092691
refers to: AT3G22600
refers to: 256933_at
t statistic: -5.26282531894218

PUB23 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.69206338333333
p value: 0.00492262527687163
refers to: 263935_at
refers to: PUB23
t statistic: 6.85339598644199

266682_at
type: EFO_0005072
part of: A-AFFY-2

252363_at
type: EFO_0005072
part of: A-AFFY-2

WRKY40
type: EnsemblDatabaseReference

AT3G28420
type: EnsemblDatabaseReference

ERF019
type: EnsemblDatabaseReference

AT1G72140
type: EnsemblDatabaseReference

WRKY22 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.39201311666667
p value: 0.00556018802263525
refers to: WRKY22
refers to: 255568_at
t statistic: 6.67070625962706

(Assay) C58 3hpi 2
type: Assay
identifier: C58 3hpi 2
has participant: A-AFFY-2

WRKY40 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.31485083333333
p value: 0.00866535930378582
refers to: 261892_at
refers to: WRKY40
t statistic: 5.8967799999514

256933_at
type: EFO_0005072
part of: A-AFFY-2

ACS8 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.80851771666666
p value: 0.0124684522239384
refers to: ACS8
refers to: 253066_at
t statistic: 5.39308916481053

(Assay) GV3101 3hpi 3
type: Assay
identifier: GV3101 3hpi 3
has participant: A-AFFY-2

248104_at
type: EFO_0005072
part of: A-AFFY-2

AT1G76790
type: EnsemblDatabaseReference

WRKY15
type: EnsemblDatabaseReference

PIP2D
type: EnsemblDatabaseReference

AtGolS3
type: EnsemblDatabaseReference

MAPKKK14
type: EnsemblDatabaseReference

260727_at
type: EFO_0005072
part of: A-AFFY-2

AT3G18560
type: EnsemblDatabaseReference

NCED5 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.24959555
p value: 0.0457688571131533
refers to: NCED5
refers to: 256190_at
t statistic: 3.96094526673776

ATPP2-A5
type: EnsemblDatabaseReference

(Sample) organism part/inflorescence stalk
type: EFO_0000001
property type: organism part
property value: inflorescence stalk

BGLU6
type: EnsemblDatabaseReference

264213_at
type: EFO_0005072
part of: A-AFFY-2

264271_at
type: EFO_0005072
part of: A-AFFY-2

PROPEP2
type: EnsemblDatabaseReference

DAD1
type: EnsemblDatabaseReference

258468_at
type: EFO_0005072
part of: A-AFFY-2

AT2G27830
type: EnsemblDatabaseReference

245624_at
type: EFO_0005072
part of: A-AFFY-2

ORA59
type: EnsemblDatabaseReference

AT3G15720
type: EnsemblDatabaseReference

AT2G25735
type: EnsemblDatabaseReference

HOS3-1 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.3700375
p value: 0.0281694060847343
refers to: HOS3-1
refers to: 246235_at
t statistic: -6.04359599891156

BGLU40
type: EnsemblDatabaseReference

GH3.5
type: EnsemblDatabaseReference

AT3G48460
type: EnsemblDatabaseReference

251575_at
type: EFO_0005072
part of: A-AFFY-2

CYP81D8 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 2.08075433333333
p value: 0.00161805318198044
refers to: CYP81D8
refers to: 253046_at
t statistic: 9.72929976211807

254926_at
type: EFO_0005072
part of: A-AFFY-2

AtGolS3 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.30211083333333
p value: 0.0496884807674391
refers to: 264511_at
refers to: AtGolS3
t statistic: 3.86927626873037

WRKY22
type: EnsemblDatabaseReference

266247_at
type: EFO_0005072
part of: A-AFFY-2

UGT75C1 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.30780463333334
p value: 0.0375534288865567
refers to: UGT75C1
refers to: 245624_at
t statistic: -5.24737374717346

IAA5 UP in 'Agrobacterium tumefaciens C58' vs 'none'
type: IncreasedDifferentialExpressionRatio
fold change: 1.39686883333333
p value: 0.0120097384933639
refers to: IAA5
refers to: 261766_at
t statistic: 5.48605369437964

CAX1
type: EnsemblDatabaseReference

(Assay) Reference 3hpi 3
type: Assay
identifier: Reference 3hpi 3
has participant: A-AFFY-2

AT1G05575
type: EnsemblDatabaseReference

261766_at
type: EFO_0005072
part of: A-AFFY-2

A-AFFY-2
type: EFO_0000269

AT1G76790 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.85891658333334
p value: 0.0335709728498291
refers to: AT1G76790
refers to: 259878_at
t statistic: -5.64546684552195

247205_at
type: EFO_0005072
part of: A-AFFY-2

255795_at
type: EFO_0005072
part of: A-AFFY-2

251246_at
type: EFO_0005072
part of: A-AFFY-2

AT1G76600
type: EnsemblDatabaseReference

CYP71B7
type: EnsemblDatabaseReference

RD20
type: EnsemblDatabaseReference

ATGSTF12 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.21375883333334
p value: 0.0214641930020019
refers to: ATGSTF12
refers to: 250083_at
t statistic: -6.7142210127719

266883_at
type: EFO_0005072
part of: A-AFFY-2

IAMT1
type: EnsemblDatabaseReference

256799_at
type: EFO_0005072
part of: A-AFFY-2

AT1G48100 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.28968151666667
p value: 0.032996389443836
refers to: AT1G48100
refers to: 260727_at
t statistic: -5.7797222058639

Analysis of 'Agrobacterium tumefaciens C58' vs 'none'
type: MicroarrayDifferentialExpressionAnalysis

259878_at
type: EFO_0005072
part of: A-AFFY-2

260602_at
type: EFO_0005072
part of: A-AFFY-2

ATPLC4
type: EnsemblDatabaseReference

DAD1 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
type: DecreasedDifferentialExpressionRatio
fold change: -1.91495803333333
p value: 0.0163242716839838
refers to: DAD1
refers to: 266883_at
t statistic: -7.89173674104551