DREB1A DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
MAPKKK14 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT1G76600 UP in 'Agrobacterium tumefaciens C58' vs 'none'
ERF019 UP in 'Agrobacterium tumefaciens C58' vs 'none'
PROPEP2 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT1G55450 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT5G02760 UP in 'Agrobacterium tumefaciens C58' vs 'none'
PIP2D DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
ATSERAT2;1 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT3G28220 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
AT3G15720 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
AT1G26380 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT2G27660 UP in 'Agrobacterium tumefaciens C58' vs 'none'
ACS6 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
AT3G28420 UP in 'Agrobacterium tumefaciens C58' vs 'none'
CYP71B7 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
PUB23 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
IAA19 UP in 'Agrobacterium tumefaciens C58' vs 'none'
BGLU40 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
ACS6 UP in 'Agrobacterium tumefaciens C58' vs 'none'
SAG21 UP in 'Agrobacterium tumefaciens C58' vs 'none'
SNG1 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
AFR DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
GH3.3 UP in 'Agrobacterium tumefaciens C58' vs 'none'
(Factor value) INFECT/Agrobacterium tumefaciens GV3101
CAX1 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
ATPP2-A5 UP in 'Agrobacterium tumefaciens C58' vs 'none'
CYP81D8 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
AT2G19780 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
IAMT1 UP in 'Agrobacterium tumefaciens C58' vs 'none'
GH3.5 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT1G05575 UP in 'Agrobacterium tumefaciens C58' vs 'none'
(Factor value) INFECT/Agrobacterium tumefaciens C58
BGLU6 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
AT4G37710 UP in 'Agrobacterium tumefaciens C58' vs 'none'
CYP71B7 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT2G25735 UP in 'Agrobacterium tumefaciens C58' vs 'none'
This study focuses on responses of the host plant to infection with Agrobacterium tumefaciens. Genome wide changes in gene expression were integrated with the alterations in metabolite levels three hours after inoculation of agrobacteria. Plants were infected with the virulent strain C58, harboring a T-DNA, or with strain GV3101, containing a disarmed Ti-plasmid. This allows discrimination between signals which derive from the bacterial pathogen and the T-DNA encoded genes. Experiment Overall Design: The bases of Arabidopsis thaliana (WS-2) inflorescence stalks were wounded and immediately infected with Agrobacterium tumefaciens or mock-infected for three hours. Stalks of intact plants were inoculated with the oncogenic strain C58 (C58 3 hpi 1 to 6) or the non-virulent strain GV3101 (GV3101 3 hpi 1 to 3) to provide conditions close to nature. The gene expression data of three independent experiments of infected material were compared with six non-infected samples (reference 3 hpi 1 to 6). Differential gene expression was determined by applying the LIMMA package (Linear Models for Microarray Data; Smyth, G.K. (2004) Applic. Genet. Mol. Biol. 3, Article 3; http://www.bepress.com/sagmb/vol3/iss1/art3/).
AtMYB74 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
PUB22 UP in 'Agrobacterium tumefaciens C58' vs 'none'
HOS3-1 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
WRKY22 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
AT1G72140 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
TT8 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
PER4 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT3G48460 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
ATBZIP61 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT1G51800 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT1G26380 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
ATMES9 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
IAA1 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT4G20860 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT2G27830 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT3G18560 UP in 'Agrobacterium tumefaciens C58' vs 'none'
Analysis of 'Agrobacterium tumefaciens GV3101' vs 'none'
AT2G28400 UP in 'Agrobacterium tumefaciens C58' vs 'none'
ATGA2OX4 UP in 'Agrobacterium tumefaciens C58' vs 'none'
IAA30 UP in 'Agrobacterium tumefaciens C58' vs 'none'
SUFE2 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT3G23170 UP in 'Agrobacterium tumefaciens C58' vs 'none'
CYP710A1 UP in 'Agrobacterium tumefaciens C58' vs 'none'
WRKY15 UP in 'Agrobacterium tumefaciens C58' vs 'none'
RD20 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
ORA59 UP in 'Agrobacterium tumefaciens GV3101' vs 'none'
DAD1 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
AT4G22530 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT3G06070 UP in 'Agrobacterium tumefaciens C58' vs 'none'
ATPLC4 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
AT1G76790 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
WRKY53 UP in 'Agrobacterium tumefaciens C58' vs 'none'
ATMES9 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
AT3G22600 DOWN in 'Agrobacterium tumefaciens C58' vs 'none'
PUB23 UP in 'Agrobacterium tumefaciens C58' vs 'none'
WRKY22 UP in 'Agrobacterium tumefaciens C58' vs 'none'
WRKY40 UP in 'Agrobacterium tumefaciens C58' vs 'none'
ACS8 UP in 'Agrobacterium tumefaciens C58' vs 'none'
NCED5 UP in 'Agrobacterium tumefaciens C58' vs 'none'
(Sample) organism part/inflorescence stalk
HOS3-1 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
CYP81D8 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AtGolS3 UP in 'Agrobacterium tumefaciens C58' vs 'none'
UGT75C1 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
IAA5 UP in 'Agrobacterium tumefaciens C58' vs 'none'
AT1G76790 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
ATGSTF12 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
AT1G48100 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'
Analysis of 'Agrobacterium tumefaciens C58' vs 'none'
DAD1 DOWN in 'Agrobacterium tumefaciens GV3101' vs 'none'